AlfalfaGEDB | Msa0000320

M. sativa cultivar zhongmu-4 / Msa0000320

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0000320	XP_013457458.1	94.472	796	24	4	1	796	1	776	0.0	1518

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0000320	sp\|C0LGS3\|Y4372_ARATH	56.692	792	281	14	23	796	21	768	0.0	834

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000320	Msa0017950	0.802816	4.688448e-49	-8.615850e-47
Msa0000320	Msa0077340	0.800159	1.642658e-48	-8.615850e-47
Msa0000320	Msa0225480	0.812014	5.246362e-51	-8.615850e-47
Msa0000320	Msa0241610	0.821029	5.015455e-53	-8.615850e-47
Msa0000320	Msa0419540	0.829907	3.959007e-55	-8.615850e-47
Msa0000320	Msa0465530	0.816030	6.821649e-52	-8.615850e-47
Msa0000320	Msa0519840	0.802979	4.337328e-49	-8.615850e-47
Msa0000320	Msa0529030	0.806147	9.471302e-50	-8.615850e-47
Msa0000320	Msa0580370	0.801221	9.976034e-49	-8.615850e-47
Msa0000320	Msa0706760	0.806156	9.431899e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0000320	MtrunA17_Chr4g0053411	94.472	796	24	4	1	796	1	776	0.0	1518
Msa0000320	MtrunA17_Chr1g0208121	50.260	770	327	15	36	788	4	734	0.0	718
Msa0000320	MtrunA17_Chr1g0209211	36.985	776	378	24	23	783	24	703	2.43e-132	410
Msa0000320	MtrunA17_Chr4g0005411	35.641	780	397	18	27	783	23	720	3.68e-130	405
Msa0000320	MtrunA17_Chr7g0243401	35.914	788	391	22	23	783	20	720	2.27e-128	400
Msa0000320	MtrunA17_Chr5g0437741	30.760	816	389	26	31	791	79	773	1.14e-80	275
Msa0000320	MtrunA17_Chr1g0209521	29.625	773	354	24	31	783	34	636	1.28e-73	253
Msa0000320	MtrunA17_Chr3g0128551	27.764	796	370	24	3	783	8	613	6.28e-69	239
Msa0000320	MtrunA17_Chr5g0434551	29.057	795	366	26	1	783	1	609	7.91e-67	233
Msa0000320	MtrunA17_Chr3g0134221	29.376	657	342	22	138	783	102	647	1.37e-64	228

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0000320	AT4G37250.1	56.692	792	281	14	23	796	21	768	0.0	834
Msa0000320	AT2G23300.1	58.616	795	256	15	23	796	30	772	0.0	767
Msa0000320	AT5G67280.1	52.859	787	308	14	7	785	14	745	0.0	741
Msa0000320	AT4G34220.1	45.568	801	364	17	2	783	5	752	0.0	620
Msa0000320	AT2G15300.1	47.006	785	326	22	23	783	23	741	0.0	604
Msa0000320	AT2G01210.1	35.652	805	400	21	5	785	2	712	6.02e-141	433
Msa0000320	AT1G25320.1	34.793	799	395	23	6	783	5	698	9.83e-130	403
Msa0000320	AT1G67510.1	33.629	788	407	20	22	783	21	718	7.88e-120	378
Msa0000320	AT1G66830.1	33.333	795	399	21	11	788	5	685	8.28e-114	361
Msa0000320	AT2G42290.1	31.047	802	376	23	1	783	1	644	2.00e-99	322

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Find 195 sgRNAs with CRISPR-Local

Find 582 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTGGTTCAGGGTTA+GGG	0.426670	1_1:-1368329	None:intergenic
AAAACTATACTACTATATGA+GGG	0.624521	1_1:-1368094	None:intergenic
AAACAGAGTGGTTTGAGAAA+AGG	0.451410	1_1:+1369279	Msa0000320:CDS
AAACTAAAGGGTTTACAAGG+TGG	0.626988	1_1:+1369460	Msa0000320:CDS
AAAGAATGATACACCGTTTA+GGG	0.277291	1_1:+1368498	Msa0000320:CDS
AAAGAGTAAACATCCCATTT+TGG	0.177830	1_1:-1371474	None:intergenic
AAATGGGATGTTTACTCTTT+TGG	0.163879	1_1:+1371477	Msa0000320:CDS
AAATGGTGTTGAAAGGTTCA+AGG	0.480271	1_1:+1369788	Msa0000320:CDS
AACAGAAGATGAAGAATCCT+CGG	0.505245	1_1:+1369500	Msa0000320:CDS
AACATTGTTTGAAGAGAGAA+CGG	0.519601	1_1:-1368230	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATTTGCAACAAGAGGTTT+GGG	+	chr1_1:1368024-1368043	Msa0000320:five_prime_UTR	30.0%
ACAATATAATTCCTTCCACA+TGG	+	chr1_1:1368152-1368171	Msa0000320:five_prime_UTR	30.0%
AACATTGTTTGAAGAGAGAA+CGG	-	chr1_1:1368233-1368252	None:intergenic	30.0%
AAAGAATGATACACCGTTTA+GGG	+	chr1_1:1368498-1368517	Msa0000320:CDS	30.0%
AGAAAACTAAGCTCAGAATT+TGG	-	chr1_1:1368658-1368677	None:intergenic	30.0%
ATTGTTCTTAAACGAAGCTA+CGG	-	chr1_1:1368818-1368837	None:intergenic	30.0%
GCTAAAGAGAAAAAAAGATG+CGG	+	chr1_1:1369377-1369396	Msa0000320:CDS	30.0%
TCTTCAACCTTAGAAACTAA+AGG	+	chr1_1:1369447-1369466	Msa0000320:CDS	30.0%
CTTCAACCTTAGAAACTAAA+GGG	+	chr1_1:1369448-1369467	Msa0000320:CDS	30.0%
TAGAAACTAAAGGGTTTACA+AGG	+	chr1_1:1369457-1369476	Msa0000320:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	1367878	1371991	1367878	ID=Msa0000320;Name=Msa0000320
chr1_1	mRNA	1367878	1371991	1367878	ID=Msa0000320-mRNA-1;Parent=Msa0000320;Name=Msa0000320-mRNA-1;_AED=0.01;_eAED=0.01;_QI=408\|0\|0.66\|0.66\|1\|1\|3\|209\|796
chr1_1	exon	1367878	1369951	1367878	ID=Msa0000320-mRNA-1:exon:139;Parent=Msa0000320-mRNA-1
chr1_1	exon	1370054	1370095	1370054	ID=Msa0000320-mRNA-1:exon:140;Parent=Msa0000320-mRNA-1
chr1_1	exon	1371100	1371991	1371100	ID=Msa0000320-mRNA-1:exon:141;Parent=Msa0000320-mRNA-1
chr1_1	five_prime_UTR	1367878	1368285	1367878	ID=Msa0000320-mRNA-1:five_prime_utr;Parent=Msa0000320-mRNA-1
chr1_1	CDS	1368286	1369951	1368286	ID=Msa0000320-mRNA-1:cds;Parent=Msa0000320-mRNA-1
chr1_1	CDS	1370054	1370095	1370054	ID=Msa0000320-mRNA-1:cds;Parent=Msa0000320-mRNA-1
chr1_1	CDS	1371100	1371782	1371100	ID=Msa0000320-mRNA-1:cds;Parent=Msa0000320-mRNA-1
chr1_1	three_prime_UTR	1371783	1371991	1371783	ID=Msa0000320-mRNA-1:three_prime_utr;Parent=Msa0000320-mRNA-1

Gene Sequence

>Msa0000320

ATGAAAACAACACTTTCTCTTCTTCTCACATTCCTATCTTTAACCCTAACCCTGAACCAATGTTTTTCACTCACTAACGATGGTGTTTTGTTACTTTCTTTCAAATATGCTGTTCTTAACGACCCTTTATTGGTGCTTTCAAATTGGAATTATAGCGACCAAACACCATGTTCATGGAACGGTGTTTCTTGTTCCATAATAACACCAAACACAAAGAATGATACACCGTTTAGGGTTACTGGTTTATCACTACCGAATTCTCAGCTTGTTAGTTCAATTCCTTCTGATCTTGGTTCCATTGAGCACCTTCAAATTCTTGATCTTTCTAACAATTCCATTAATGGGTCTCTTCCTACAAACCTTTTTCAGCCAAATTCTGAGCTTAGTTTTCTAAATTTTTCGAATAATTTGTTAACAGGGGAAGTTCCAGAGTCTTTAACAGAGCTTAGAAATCTTCAGTTTCTTAACTTTTCAGACAATTCTTTCACTGGAAAACTACCAAACAATCTCTCAAACATGCAAAACTTAACCGTAGCTTCGTTTAAGAACAATTACTTCACTGGTTTTCTTCCTAAAGATTTGCGAAATTTACAAGTTTTGGATCTGTCTTCCAATTTGTTAAACGGGTCGTTAACTCAAGATTTTGGTGGTGATTCCTTGCGTTACTTGAATGTTTCTTACAATAGATTTTCCGGTGAAATTCCACCGGAATTCGCCGAGAAAATTCCGAGTAACGCAACCGTTGATCTATCATTCAACAATCTCACTGGAGAAATACCAGAGTCCCCTGTTTTGTTGAACCAGGAAACAAAAGTGTTTTCTGGTAATAGTGATCTATGTGGTGAACCAATGAAAAATCCTTGTTCTATTCCTTCTTCTCCTTCTTCTGATCCTCAAGGTTCTTCTCCAACTTCTCCTCCTGCAATCGCCGCAATGCCGAAGACTTTTGATAATGATTCTCCTCAATCACCAACAACAGAGTCTTCAGAGAAGAAACAGAGTGGTTTGAGAAAAGGAACTATTATAGGAATTGTTATTGGTGATTTCGTTGGAATTGGAATCTTAGCTATGGTTTTTGTTTATGTTTATAAGCTAAAGAGAAAAAAAGATGCGGAAAATGCAATAAAAGATGAAGCTGCTACTGCAAGAAGTGAGAATTCTTCTTCAACCTTAGAAACTAAAGGGTTTACAAGGTGGTCTTGTTTAAGAAAAAGAACAGAAGATGAAGAATCCTCGGAGACACAAAGTTCTTCAGATAGTGACGTGGAAACATCACAAAAAAATGTTGATGGTGTTGAGAATCAAAAGCAAGGTGAGAATAAAACTGGTACTGGTACGGGTTCAGGTACGGGTACTCTGGTTATAGTAGACGGTGAAAGAGAGCTTGAAGTGGAAACACTTTTGAAAGCTTCTGCATATATTTTAGGAGCTACTGGTTCAAGTATAATGTATAAAGCTGTTCTTGAAGATGGAACTTCTTTAGCAGTTCGGAGAATTGGTGAAAATGGTGTTGAAAGGTTCAAGGATTTTGAGAATCAAGTTCGGGTTATAGCTAAATTAGTTCATCCAAATTTGGTTAGAGTTCGTGGTTTTTACTGGGGACATGATGAAAAGCTCATTATCTATGATTATGTTCCTAATGGTTGTCTTGCCAACGTTCGTTACAGATATGATATTGTTATGAGTCATGACGTTGATGGAGAAGTAGGGAAAGTGGGGTCCTCACCTAGCCACTTACCGTGGGAAATACGGCTCAAGATAGCAAAAGGTGTGGCACGTGGGCTGACTTATCTCCACGAGAAGAAGCACGTGCATGGAAACTTGAAGCCTACCAATATTCTATTGGGCAATGATATGGAGCCCAAAATTGGAGACTTTGGGCTTGAAAGAATAGTAACAGGTGACACAAGTTATAGTAAAGCTGGAGGTTCAGCACGTATTTTTGGAAGTAAAAGATCATCAGCCTCACGTGATAGTTTTCAAGATGTTACTTGTGGGCCTAGCCCAAGCCCAAGCCCAAGTTCCATAGGTGGTGTGTCACCTTATCATGCTCCTGAATCACTTAGGAATTTGAAACCTCACCCAAAATGGGATGTTTACTCTTTTGGGGTAATGTTTCTAGAACTATTAACGGGGAAGATTGTGGTTTTGGATGATATGGGCCTAGGCCCAGCGGTTTTGGTTGAGGATAAGAATCGAGCTTTGAGGATGGTTGACGTGGCGATTCGTGCTGATATGGAAGGTAAGGAGGATGCCTTGTTGGCTTATTTTAAGTTAGGGTATAGTTGTGTGACTAATGTACCTCAAAAAAGGCCACAAATGAAAGAGGTGTTGCAAGTACTTGAAAAAACACCATCTACGATTTCTTCATCGTATTATTATAGTCACTGA

Protein sequence

>Msa0000320

MKTTLSLLLTFLSLTLTLNQCFSLTNDGVLLLSFKYAVLNDPLLVLSNWNYSDQTPCSWNGVSCSIITPNTKNDTPFRVTGLSLPNSQLVSSIPSDLGSIEHLQILDLSNNSINGSLPTNLFQPNSELSFLNFSNNLLTGEVPESLTELRNLQFLNFSDNSFTGKLPNNLSNMQNLTVASFKNNYFTGFLPKDLRNLQVLDLSSNLLNGSLTQDFGGDSLRYLNVSYNRFSGEIPPEFAEKIPSNATVDLSFNNLTGEIPESPVLLNQETKVFSGNSDLCGEPMKNPCSIPSSPSSDPQGSSPTSPPAIAAMPKTFDNDSPQSPTTESSEKKQSGLRKGTIIGIVIGDFVGIGILAMVFVYVYKLKRKKDAENAIKDEAATARSENSSSTLETKGFTRWSCLRKRTEDEESSETQSSSDSDVETSQKNVDGVENQKQGENKTGTGTGSGTGTLVIVDGERELEVETLLKASAYILGATGSSIMYKAVLEDGTSLAVRRIGENGVERFKDFENQVRVIAKLVHPNLVRVRGFYWGHDEKLIIYDYVPNGCLANVRYRYDIVMSHDVDGEVGKVGSSPSHLPWEIRLKIAKGVARGLTYLHEKKHVHGNLKPTNILLGNDMEPKIGDFGLERIVTGDTSYSKAGGSARIFGSKRSSASRDSFQDVTCGPSPSPSPSSIGGVSPYHAPESLRNLKPHPKWDVYSFGVMFLELLTGKIVVLDDMGLGPAVLVEDKNRALRMVDVAIRADMEGKEDALLAYFKLGYSCVTNVPQKRPQMKEVLQVLEKTPSTISSSYYYSH*