Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330430 | XP_039689723.1 | 94.805 | 308 | 16 | 0 | 1 | 308 | 1 | 308 | 0.0 | 598 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330430 | sp|Q93VK9|SPC25_ARATH | 41.472 | 299 | 156 | 8 | 10 | 299 | 24 | 312 | 6.42e-61 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330430 | A0A072UQ27 | 93.709 | 302 | 16 | 1 | 1 | 299 | 1 | 302 | 0.0 | 572 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1258030 | Msa1330430 | -0.818815 | 1.610146e-52 | -8.615850e-47 |
| Msa1330430 | Msa1364350 | -0.832386 | 9.735093e-56 | -8.615850e-47 |
| Msa1209440 | Msa1330430 | 0.816699 | 4.832285e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330430 | MtrunA17_Chr4g0058741 | 93.709 | 302 | 16 | 1 | 1 | 299 | 1 | 302 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330430 | AT3G48210.1 | 41.472 | 299 | 156 | 8 | 10 | 299 | 24 | 312 | 6.53e-62 | 199 |
Find 88 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTGACGGTTACATGATTT+TGG | 0.111879 | 8_4:+49568920 | None:intergenic |
| AGGCCATCTCTTGGTATAAC+AGG | 0.291680 | 8_4:-49571609 | Msa1330430:CDS |
| TCATGTAACCGTCAGTCATT+AGG | 0.299423 | 8_4:-49568914 | Msa1330430:three_prime_UTR |
| CATCTGTCTTGTTTAATTCA+TGG | 0.302544 | 8_4:+49571250 | None:intergenic |
| TTTGATGGATTGGAAGGATT+TGG | 0.310983 | 8_4:+49573482 | None:intergenic |
| CGAACAGATAAAGCAGAATT+AGG | 0.320831 | 8_4:+49570551 | None:intergenic |
| GCATAGTTTAATTGAGAAAC+TGG | 0.323527 | 8_4:-49573672 | Msa1330430:five_prime_UTR |
| AAAGCAGAATTAGGAGATAA+AGG | 0.332141 | 8_4:+49570560 | None:intergenic |
| TTCTGCTTCGCAGCGGGTTA+AGG | 0.342230 | 8_4:+49573551 | None:intergenic |
| GCTCCCCGAGGTTCTCTTGC+AGG | 0.343043 | 8_4:-49569101 | Msa1330430:three_prime_UTR |
| GTAAAAGAGTACTCCTCATT+TGG | 0.343740 | 8_4:+49571431 | None:intergenic |
| GAAGGAAGTGGAAGATGAAT+TGG | 0.348717 | 8_4:-49573317 | Msa1330430:CDS |
| TCGCCAGTCTCCACGTTTGA+AGG | 0.380013 | 8_4:-49570531 | Msa1330430:intron |
| CCATGATGTCAATGTAGTTC+TGG | 0.380893 | 8_4:-49568993 | Msa1330430:three_prime_UTR |
| TATTGACAATGTATTTGAAA+TGG | 0.388190 | 8_4:-49568878 | Msa1330430:three_prime_UTR |
| TCTTGGTATAACAGGGTACT+TGG | 0.397967 | 8_4:-49571601 | Msa1330430:CDS |
| GGCTAAGCGAATGGCTTTGT+TGG | 0.400276 | 8_4:-49573175 | Msa1330430:CDS |
| GAATTGGTTAAAGTACTTGC+AGG | 0.417371 | 8_4:-49573301 | Msa1330430:intron |
| AGTTCGCAGAAGGAAAAGTT+TGG | 0.432380 | 8_4:-49570585 | Msa1330430:CDS |
| TAAAGACAAATTGAAGGAAG+TGG | 0.439442 | 8_4:-49573329 | Msa1330430:CDS |
| TTGTGACAATGTATTTGAAA+TGG | 0.447665 | 8_4:-49568834 | Msa1330430:three_prime_UTR |
| AGGAGCGGATGAAGATATAA+AGG | 0.452608 | 8_4:+49570697 | None:intergenic |
| TTCCAGACGTATCTATGTTC+CGG | 0.455046 | 8_4:-49569036 | Msa1330430:three_prime_UTR |
| GTTCTAACAACAGTTAATCC+TGG | 0.455209 | 8_4:-49570728 | Msa1330430:CDS |
| TGTGATTTCTGCTTCGCAGC+GGG | 0.455421 | 8_4:+49573545 | None:intergenic |
| CATGTAACCGTCAGTCATTA+GGG | 0.458423 | 8_4:-49568913 | Msa1330430:three_prime_UTR |
| TTTATATCTTCATCCGCTCC+TGG | 0.466324 | 8_4:-49570695 | Msa1330430:CDS |
| TTCAGAAAAGACGCGTAAAG+AGG | 0.467634 | 8_4:-49573196 | Msa1330430:intron |
| CGTTGTGAACCTTCCTTCGA+TGG | 0.489675 | 8_4:-49571288 | Msa1330430:CDS |
| ATTGCCTGCAAGAGAACCTC+GGG | 0.494961 | 8_4:+49569097 | None:intergenic |
| TGAGGTTAAAGACAAATTGA+AGG | 0.495061 | 8_4:-49573335 | Msa1330430:CDS |
| GCTTCTGCTAAGGCTAGAGT+TGG | 0.508997 | 8_4:-49573144 | Msa1330430:CDS |
| CTTCGATGGTATTGAAGAGC+TGG | 0.509662 | 8_4:-49571274 | Msa1330430:CDS |
| ATACCTTCAAACGTGGAGAC+TGG | 0.510056 | 8_4:+49570528 | None:intergenic |
| GGATGCTATTGCTTCTGCTA+AGG | 0.514115 | 8_4:-49573154 | Msa1330430:CDS |
| GGATTGGAAGGATTTGGAAA+AGG | 0.514441 | 8_4:+49573488 | None:intergenic |
| CAACAAACCGCGAAAACTCA+AGG | 0.515409 | 8_4:-49573450 | Msa1330430:intron |
| TTAAGTTTGTCAGAGTAATG+AGG | 0.518116 | 8_4:-49571221 | Msa1330430:CDS |
| GAAACTCTGGCAGCATCTGA+AGG | 0.522058 | 8_4:-49571673 | Msa1330430:intron |
| TTTCTATCGCAGCAATCACT+CGG | 0.528626 | 8_4:-49573066 | Msa1330430:intron |
| CCAGAACTACATTGACATCA+TGG | 0.529645 | 8_4:+49568993 | None:intergenic |
| AAAGCTCCAACGTGTTGTGG+TGG | 0.532390 | 8_4:+49573647 | None:intergenic |
| GAGCATGAAGTGGAACGCTC+TGG | 0.532714 | 8_4:-49570635 | Msa1330430:CDS |
| ATCTGAAGGGAGGTTGAATG+AGG | 0.533325 | 8_4:-49571659 | Msa1330430:CDS |
| GATATAAAGGCAGATTCTCC+AGG | 0.534729 | 8_4:+49570710 | None:intergenic |
| TGAGGAGGAGAACAGAAAGA+TGG | 0.536033 | 8_4:-49573586 | Msa1330430:exon |
| GAAGGATTTGGAAAAGGAAG+CGG | 0.548779 | 8_4:+49573494 | None:intergenic |
| AAGCTCCAACGTGTTGTGGT+GGG | 0.549699 | 8_4:+49573648 | None:intergenic |
| TAGAAGTGATTCTACAACCA+TGG | 0.551320 | 8_4:-49570663 | Msa1330430:CDS |
| AAACACAGGAGGCCATCTCT+TGG | 0.552693 | 8_4:-49571618 | Msa1330430:CDS |
| TGCTTCGCAGCGGGTTAAGG+AGG | 0.553460 | 8_4:+49573554 | None:intergenic |
| AGCTCCAACGTGTTGTGGTG+GGG | 0.555267 | 8_4:+49573649 | None:intergenic |
| AACCGGAACATAGATACGTC+TGG | 0.563819 | 8_4:+49569034 | None:intergenic |
| CTTCTCAGTTCAATTAGATG+AGG | 0.570883 | 8_4:-49573353 | Msa1330430:intron |
| CGGCGAAAGCGTCGACGGTG+TGG | 0.579854 | 8_4:+49573514 | None:intergenic |
| AAACTCTGGCAGCATCTGAA+GGG | 0.583847 | 8_4:-49571672 | Msa1330430:intron |
| GGAAGCGGCGAAAGCGTCGA+CGG | 0.585423 | 8_4:+49573509 | None:intergenic |
| TCACTTCTAACAGATGTGCC+AGG | 0.592551 | 8_4:+49570677 | None:intergenic |
| TCTCAACTCAAGTATTCAAG+AGG | 0.594999 | 8_4:-49573118 | Msa1330430:CDS |
| AAATTTGATGAATCCAAATG+AGG | 0.603849 | 8_4:-49571444 | Msa1330430:CDS |
| CATGGAAAATGAGCATGAAG+TGG | 0.605107 | 8_4:-49570645 | Msa1330430:CDS |
| TACCCTGTTATACCAAGAGA+TGG | 0.606063 | 8_4:+49571606 | None:intergenic |
| CTCTGGCAGCATCTGAAGGG+AGG | 0.608901 | 8_4:-49571669 | Msa1330430:intron |
| AATTGCCTGCAAGAGAACCT+CGG | 0.613981 | 8_4:+49569096 | None:intergenic |
| TGTATCATATGTGACAGACT+AGG | 0.617833 | 8_4:-49569173 | Msa1330430:exon |
| CAGCTCTTCAATACCATCGA+AGG | 0.622116 | 8_4:+49571275 | None:intergenic |
| CATGAATTAAACAAGACAGA+TGG | 0.623903 | 8_4:-49571249 | Msa1330430:CDS |
| GCGTAAAGAGGCTAAGCGAA+TGG | 0.626876 | 8_4:-49573184 | Msa1330430:CDS |
| TCAGCATGTAGCATCAAATG+AGG | 0.628645 | 8_4:+49569124 | None:intergenic |
| TTTCAAGAAGCATTGACACA+AGG | 0.631864 | 8_4:-49571192 | Msa1330430:intron |
| TGAATTTGTTAGCAAACACT+TGG | 0.635409 | 8_4:+49569063 | None:intergenic |
| TCTTCAATACCATCGAAGGA+AGG | 0.637490 | 8_4:+49571279 | None:intergenic |
| AACATTGGATACGAGTGAGG+AGG | 0.639540 | 8_4:-49573601 | Msa1330430:five_prime_UTR |
| GGCCATCTCTTGGTATAACA+GGG | 0.647513 | 8_4:-49571608 | Msa1330430:CDS |
| TCTAACAGATGTGCCAGGAG+CGG | 0.649007 | 8_4:+49570682 | None:intergenic |
| GCATGTAGCATCAAATGAGG+TGG | 0.650419 | 8_4:+49569127 | None:intergenic |
| TCTGAAGGGAGGTTGAATGA+GGG | 0.651760 | 8_4:-49571658 | Msa1330430:CDS |
| TGAACATACAGATGAAACAC+AGG | 0.659863 | 8_4:-49571632 | Msa1330430:CDS |
| TATCACGCCCTAATGACTGA+CGG | 0.661282 | 8_4:+49568906 | None:intergenic |
| TTTCGCGGTTTGTTGTGCGG+TGG | 0.664534 | 8_4:+49573458 | None:intergenic |
| GTGTGATTTCTGCTTCGCAG+CGG | 0.670448 | 8_4:+49573544 | None:intergenic |
| GACTAGGAGATAAAATACAA+AGG | 0.671041 | 8_4:-49569157 | Msa1330430:three_prime_UTR |
| CTGGCCCCACCACAACACGT+TGG | 0.694864 | 8_4:-49573653 | Msa1330430:five_prime_UTR |
| GCTACATGCTGAGCTCCCCG+AGG | 0.715507 | 8_4:-49569113 | Msa1330430:three_prime_UTR |
| GTAATTCATACCTTCAAACG+TGG | 0.717846 | 8_4:+49570521 | None:intergenic |
| ACATACAGATGAAACACAGG+AGG | 0.726406 | 8_4:-49571629 | Msa1330430:CDS |
| GTATTCAAGAGGTTCGAACG+AGG | 0.743006 | 8_4:-49573107 | Msa1330430:CDS |
| TTGCCTGCAAGAGAACCTCG+GGG | 0.789141 | 8_4:+49569098 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTTGTAAATAGTTA+TGG | - | chr8_4:49573220-49573239 | Msa1330430:intron | 10.0% |
| !! | AATCAAATAATAAAAAATCA+TGG | + | chr8_4:49573671-49573690 | None:intergenic | 10.0% |
| !!! | ACCTTATTTGTTTTAAATAA+TGG | - | chr8_4:49569224-49569243 | Msa1330430:intron | 15.0% |
| !!! | TCCATTATTTAAAACAAATA+AGG | + | chr8_4:49569228-49569247 | None:intergenic | 15.0% |
| !!! | ATCTTCAAAAAAGATTTTAA+AGG | + | chr8_4:49569978-49569997 | None:intergenic | 15.0% |
| !!! | TTCAAATCTTATTTTATAAC+AGG | + | chr8_4:49570011-49570030 | None:intergenic | 15.0% |
| !! | TGTTATAAAATAAGATTTGA+AGG | - | chr8_4:49570010-49570029 | Msa1330430:intron | 15.0% |
| !! | AAAAAATTTAAAAAGACTGA+TGG | + | chr8_4:49570310-49570329 | None:intergenic | 15.0% |
| !!! | AATTAACTTTTTTTTGCTTA+AGG | - | chr8_4:49570929-49570948 | Msa1330430:intron | 15.0% |
| !!! | ATGTATAAGTATTTTTATCA+TGG | + | chr8_4:49571076-49571095 | None:intergenic | 15.0% |
| !!! | TCATTATAATATGAAGTATT+TGG | + | chr8_4:49571467-49571486 | None:intergenic | 15.0% |
| !! | AATAGAATAAATTGGTAAAT+GGG | - | chr8_4:49572125-49572144 | Msa1330430:intron | 15.0% |
| !! | TATAAATACAGAATTCAAAA+GGG | + | chr8_4:49573009-49573028 | None:intergenic | 15.0% |
| !! | AAATAAAAATGCTAAAAGAA+CGG | - | chr8_4:49573059-49573078 | Msa1330430:intron | 15.0% |
| !! | TCACAAATAATAAAAAATCA+TGG | + | chr8_4:49573627-49573646 | None:intergenic | 15.0% |
| !! | ACTTAAATAGCTATAAATTG+CGG | + | chr8_4:49569461-49569480 | None:intergenic | 20.0% |
| !! | GTTCATACATTCAAAAATAA+TGG | + | chr8_4:49570503-49570522 | None:intergenic | 20.0% |
| !!! | TTATCATTTTACAATTCAAG+CGG | + | chr8_4:49571386-49571405 | None:intergenic | 20.0% |
| !! | TTAATAGAATCACTTCATAT+TGG | + | chr8_4:49571430-49571449 | None:intergenic | 20.0% |
| !!! | TTATCTAATTGCTATTAAAC+AGG | - | chr8_4:49571717-49571736 | Msa1330430:intron | 20.0% |
| !!! | TATCTAATTGCTATTAAACA+GGG | - | chr8_4:49571718-49571737 | Msa1330430:intron | 20.0% |
| !! | TTAGGAAGAATAGAATAAAT+TGG | - | chr8_4:49572117-49572136 | Msa1330430:intron | 20.0% |
| !! | GAATAGAATAAATTGGTAAA+TGG | - | chr8_4:49572124-49572143 | Msa1330430:intron | 20.0% |
| !! | ATAGAATAAATTGGTAAATG+GGG | - | chr8_4:49572126-49572145 | Msa1330430:intron | 20.0% |
| !!! | ACATTATTAAGTTTTCTATC+TGG | + | chr8_4:49572166-49572185 | None:intergenic | 20.0% |
| !! | CTATAAATACAGAATTCAAA+AGG | + | chr8_4:49573010-49573029 | None:intergenic | 20.0% |
| !! | AATTCTGTATTTATAGATGT+TGG | - | chr8_4:49573014-49573033 | Msa1330430:intron | 20.0% |
| !! | AAATTTGTAAATAGTTATGG+TGG | - | chr8_4:49573223-49573242 | Msa1330430:intron | 20.0% |
| !! | TATTGACAATGTATTTGAAA+TGG | - | chr8_4:49573597-49573616 | Msa1330430:five_prime_UTR | 20.0% |
| ! | CTCATGAAATTCAAAAACAT+TGG | - | chr8_4:49568859-49568878 | Msa1330430:three_prime_UTR | 25.0% |
| ! | AAAATGAAAACCCTAATAAG+AGG | + | chr8_4:49569094-49569113 | None:intergenic | 25.0% |
| ! | ATAAAAAATAAGCCAATCCA+TGG | - | chr8_4:49569739-49569758 | Msa1330430:intron | 25.0% |
| !! | AAGGATGTTTTTCTAACAAT+GGG | - | chr8_4:49570029-49570048 | Msa1330430:intron | 25.0% |
| ! | TTGAAGTTGTAATGAAGTAA+TGG | - | chr8_4:49570357-49570376 | Msa1330430:intron | 25.0% |
| ! | TGAAGTTGTAATGAAGTAAT+GGG | - | chr8_4:49570358-49570377 | Msa1330430:intron | 25.0% |
| ! | TACCACTTTGATACATAAAA+GGG | + | chr8_4:49570395-49570414 | None:intergenic | 25.0% |
| ! | AGTGGTAGAATTAATGAAAT+TGG | - | chr8_4:49570408-49570427 | Msa1330430:intron | 25.0% |
| ! | GTGGTAGAATTAATGAAATT+GGG | - | chr8_4:49570409-49570428 | Msa1330430:intron | 25.0% |
| !! | TATGGATTAAAAGAGAAGAT+GGG | + | chr8_4:49570781-49570800 | None:intergenic | 25.0% |
| !! | ATATGGATTAAAAGAGAAGA+TGG | + | chr8_4:49570782-49570801 | None:intergenic | 25.0% |
| !! | TTTTAATCCATATGAAACTC+TGG | - | chr8_4:49570789-49570808 | Msa1330430:intron | 25.0% |
| ! | AAATTTGATGAATCCAAATG+AGG | - | chr8_4:49571031-49571050 | Msa1330430:intron | 25.0% |
| ! | GTATATAAAATCATAAGTGC+AGG | + | chr8_4:49571107-49571126 | None:intergenic | 25.0% |
| ! | GTTCAATAATACATATGAAC+TGG | + | chr8_4:49571534-49571553 | None:intergenic | 25.0% |
| ! | ATTATTGAACTGTTCAAACA+TGG | - | chr8_4:49571544-49571563 | Msa1330430:intron | 25.0% |
| !!! | ATTTTTTTGTTAAACCACTC+AGG | - | chr8_4:49571996-49572015 | Msa1330430:intron | 25.0% |
| !!! | TTTATTGATTCAGCTTTTAC+AGG | + | chr8_4:49572537-49572556 | None:intergenic | 25.0% |
| ! | AAGCTGAATCAATAAATTAG+TGG | - | chr8_4:49572541-49572560 | Msa1330430:intron | 25.0% |
| !!! | TAAGTTATAGCTTTAATGCT+TGG | + | chr8_4:49572717-49572736 | None:intergenic | 25.0% |
| !!! | AATTCAAAAGGGCATTATTT+CGG | + | chr8_4:49572998-49573017 | None:intergenic | 25.0% |
| ! | TTGTGACAATGTATTTGAAA+TGG | - | chr8_4:49573641-49573660 | Msa1330430:five_prime_UTR | 25.0% |
| GCATAGTTTAATTGAGAAAC+TGG | - | chr8_4:49568803-49568822 | Msa1330430:three_prime_UTR | 30.0% | |
| ! | TTCACTCTTTTCCTCTTATT+AGG | - | chr8_4:49569080-49569099 | Msa1330430:three_prime_UTR | 30.0% |
| ! | TCACTCTTTTCCTCTTATTA+GGG | - | chr8_4:49569081-49569100 | Msa1330430:three_prime_UTR | 30.0% |
| TGAGGTTAAAGACAAATTGA+AGG | - | chr8_4:49569140-49569159 | Msa1330430:three_prime_UTR | 30.0% | |
| TAAAGACAAATTGAAGGAAG+TGG | - | chr8_4:49569146-49569165 | Msa1330430:three_prime_UTR | 30.0% | |
| AAAAATAAGCCAATCCAAAC+GGG | + | chr8_4:49569544-49569563 | None:intergenic | 30.0% | |
| CAAAAATAAGCCAATCCAAA+CGG | + | chr8_4:49569545-49569564 | None:intergenic | 30.0% | |
| TCTTATTCATAAGCTTGTCA+AGG | - | chr8_4:49569607-49569626 | Msa1330430:intron | 30.0% | |
| AATTATGATGTCAACAACCA+TGG | + | chr8_4:49569759-49569778 | None:intergenic | 30.0% | |
| ATGGTTGTTGACATCATAAT+TGG | - | chr8_4:49569758-49569777 | Msa1330430:intron | 30.0% | |
| ATCTCAATACTTATGCAAGA+TGG | + | chr8_4:49569832-49569851 | None:intergenic | 30.0% | |
| TTGAGATTACATGTACTATG+AGG | - | chr8_4:49569845-49569864 | Msa1330430:intron | 30.0% | |
| !! | GTAAATCTCTGTTTTTCTTC+TGG | - | chr8_4:49569916-49569935 | Msa1330430:intron | 30.0% |
| ! | GAAGGATGTTTTTCTAACAA+TGG | - | chr8_4:49570028-49570047 | Msa1330430:intron | 30.0% |
| ! | TAACTATGTTGTGATCGTTT+TGG | - | chr8_4:49570143-49570162 | Msa1330430:intron | 30.0% |
| ! | AACTATGTTGTGATCGTTTT+GGG | - | chr8_4:49570144-49570163 | Msa1330430:intron | 30.0% |
| !! | TTATTGGTTTACTACATCTC+TGG | - | chr8_4:49570186-49570205 | Msa1330430:intron | 30.0% |
| ! | ATGAAGTAATGGGATATCAT+TGG | - | chr8_4:49570368-49570387 | Msa1330430:intron | 30.0% |
| CTACCACTTTGATACATAAA+AGG | + | chr8_4:49570396-49570415 | None:intergenic | 30.0% | |
| AAGCTTGTCTTGTACAAAAT+CGG | - | chr8_4:49570440-49570459 | Msa1330430:intron | 30.0% | |
| !!! | TGCATTCTATGTTTTGATTG+AGG | - | chr8_4:49570634-49570653 | Msa1330430:CDS | 30.0% |
| ! | ATGGATTAAAAGAGAAGATG+GGG | + | chr8_4:49570780-49570799 | None:intergenic | 30.0% |
| !! | TACTTGGTTTTCATGTCAAA+GGG | - | chr8_4:49570890-49570909 | Msa1330430:intron | 30.0% |
| CTTATTAGTTATGCTCTTCA+GGG | - | chr8_4:49570985-49571004 | Msa1330430:intron | 30.0% | |
| TTATTAGTTATGCTCTTCAG+GGG | - | chr8_4:49570986-49571005 | Msa1330430:intron | 30.0% | |
| AAAGATAAAAGAGATGGTGT+AGG | + | chr8_4:49571159-49571178 | None:intergenic | 30.0% | |
| ACACTGAAAGATAAAAGAGA+TGG | + | chr8_4:49571165-49571184 | None:intergenic | 30.0% | |
| !! | CATCTGTCTTGTTTAATTCA+TGG | + | chr8_4:49571228-49571247 | None:intergenic | 30.0% |
| CATGAATTAAACAAGACAGA+TGG | - | chr8_4:49571226-49571245 | Msa1330430:CDS | 30.0% | |
| TTAAGTTTGTCAGAGTAATG+AGG | - | chr8_4:49571254-49571273 | Msa1330430:CDS | 30.0% | |
| ATATTGGAGTTCTGCATATT+TGG | + | chr8_4:49571414-49571433 | None:intergenic | 30.0% | |
| TAAATAGTATCTTCGCTTGT+TGG | - | chr8_4:49571657-49571676 | Msa1330430:CDS | 30.0% | |
| TTGTTGGAAATTGGATGAAA+GGG | - | chr8_4:49571673-49571692 | Msa1330430:intron | 30.0% | |
| AAAGCAGAATTAGGAGATAA+AGG | + | chr8_4:49571918-49571937 | None:intergenic | 30.0% | |
| !!! | ACAAGCACTTTTTTTTGAAG+AGG | - | chr8_4:49572087-49572106 | Msa1330430:intron | 30.0% |
| !!! | CAAGCACTTTTTTTTGAAGA+GGG | - | chr8_4:49572088-49572107 | Msa1330430:intron | 30.0% |
| AATAAATTGGTAAATGGGGT+AGG | - | chr8_4:49572130-49572149 | Msa1330430:intron | 30.0% | |
| ATAAATTGGTAAATGGGGTA+GGG | - | chr8_4:49572131-49572150 | Msa1330430:intron | 30.0% | |
| TGTATGTGAGAGAATAAAGA+AGG | - | chr8_4:49572215-49572234 | Msa1330430:intron | 30.0% | |
| GTATGTGAGAGAATAAAGAA+GGG | - | chr8_4:49572216-49572235 | Msa1330430:intron | 30.0% | |
| ACTGTTCCAATGTAATATCT+GGG | - | chr8_4:49572432-49572451 | Msa1330430:intron | 30.0% | |
| ! | GAAAATTTCTGAAGAACTAC+AGG | - | chr8_4:49572621-49572640 | Msa1330430:intron | 30.0% |
| CCATTTGTTTAGATCATTAG+AGG | + | chr8_4:49572684-49572703 | None:intergenic | 30.0% | |
| CCTCTAATGATCTAAACAAA+TGG | - | chr8_4:49572681-49572700 | Msa1330430:intron | 30.0% | |
| !! | TAAATGGAGGCATTATCTAA+TGG | - | chr8_4:49572955-49572974 | Msa1330430:intron | 30.0% |
| !! | AAATGGAGGCATTATCTAAT+GGG | - | chr8_4:49572956-49572975 | Msa1330430:intron | 30.0% |
| GGCATTATTTCGGATAATAA+AGG | + | chr8_4:49572988-49573007 | None:intergenic | 30.0% | |
| GTTGGATTAAAATGATTGAG+TGG | - | chr8_4:49573032-49573051 | Msa1330430:intron | 30.0% | |
| GACTAGGAGATAAAATACAA+AGG | - | chr8_4:49573318-49573337 | Msa1330430:CDS | 30.0% | |
| !! | TGAATTTGTTAGCAAACACT+TGG | + | chr8_4:49573415-49573434 | None:intergenic | 30.0% |
| TTCAAAAATAGCTTAGCAAC+CGG | + | chr8_4:49573461-49573480 | None:intergenic | 30.0% | |
| AAAAACATTGGATACGAGTG+AGG | - | chr8_4:49568871-49568890 | Msa1330430:three_prime_UTR | 35.0% | |
| !! | TTTGATGGATTGGAAGGATT+TGG | + | chr8_4:49568996-49569015 | None:intergenic | 35.0% |
| CTCATCTAATTGAACTGAGA+AGG | + | chr8_4:49569124-49569143 | None:intergenic | 35.0% | |
| CTTCTCAGTTCAATTAGATG+AGG | - | chr8_4:49569122-49569141 | Msa1330430:three_prime_UTR | 35.0% | |
| ! | GAATTGGTTAAAGTACTTGC+AGG | - | chr8_4:49569174-49569193 | Msa1330430:exon | 35.0% |
| TTGCAGGTTCGTTTGTATTT+GGG | - | chr8_4:49569190-49569209 | Msa1330430:CDS | 35.0% | |
| TCTCAACTCAAGTATTCAAG+AGG | - | chr8_4:49569357-49569376 | Msa1330430:intron | 35.0% | |
| ATACAGATTCACACTCTGTT+TGG | - | chr8_4:49569492-49569511 | Msa1330430:intron | 35.0% | |
| GTTGACATCATAATTGGACA+TGG | - | chr8_4:49569764-49569783 | Msa1330430:intron | 35.0% | |
| TACTTATGCAAGATGGCATT+TGG | + | chr8_4:49569825-49569844 | None:intergenic | 35.0% | |
| AGCATAGAACTAGTAAGACA+TGG | - | chr8_4:49569940-49569959 | Msa1330430:intron | 35.0% | |
| TTACACGTTTGTAACTGTTG+TGG | - | chr8_4:49570102-49570121 | Msa1330430:intron | 35.0% | |
| ! | ACTATGTTGTGATCGTTTTG+GGG | - | chr8_4:49570145-49570164 | Msa1330430:intron | 35.0% |
| ! | GTCCCTTTTATGTATCAAAG+TGG | - | chr8_4:49570390-49570409 | Msa1330430:intron | 35.0% |
| AGCTTGTCTTGTACAAAATC+GGG | - | chr8_4:49570441-49570460 | Msa1330430:intron | 35.0% | |
| TGGATTAAAAGAGAAGATGG+GGG | + | chr8_4:49570779-49570798 | None:intergenic | 35.0% | |
| TGAACATACAGATGAAACAC+AGG | - | chr8_4:49570843-49570862 | Msa1330430:intron | 35.0% | |
| !! | GTACTTGGTTTTCATGTCAA+AGG | - | chr8_4:49570889-49570908 | Msa1330430:intron | 35.0% |
| !! | ACTTGGTTTTCATGTCAAAG+GGG | - | chr8_4:49570891-49570910 | Msa1330430:intron | 35.0% |
| ! | CCTGAAGAGCATAACTAATA+AGG | + | chr8_4:49570987-49571006 | None:intergenic | 35.0% |
| CCTTATTAGTTATGCTCTTC+AGG | - | chr8_4:49570984-49571003 | Msa1330430:intron | 35.0% | |
| !! | GTAAAAGAGTACTCCTCATT+TGG | + | chr8_4:49571047-49571066 | None:intergenic | 35.0% |
| !! | TTTCAAGAAGCATTGACACA+AGG | - | chr8_4:49571283-49571302 | Msa1330430:CDS | 35.0% |
| ! | TATCTTCGCTTGTTGGAAAT+TGG | - | chr8_4:49571664-49571683 | Msa1330430:intron | 35.0% |
| CTTGTTGGAAATTGGATGAA+AGG | - | chr8_4:49571672-49571691 | Msa1330430:intron | 35.0% | |
| GTTCTAACAACAGTTAATCC+TGG | - | chr8_4:49571747-49571766 | Msa1330430:intron | 35.0% | |
| TAGAAGTGATTCTACAACCA+TGG | - | chr8_4:49571812-49571831 | Msa1330430:intron | 35.0% | |
| AGAAAAAACAAGTTCGCAGA+AGG | - | chr8_4:49571880-49571899 | Msa1330430:intron | 35.0% | |
| CGAACAGATAAAGCAGAATT+AGG | + | chr8_4:49571927-49571946 | None:intergenic | 35.0% | |
| GTAATTCATACCTTCAAACG+TGG | + | chr8_4:49571957-49571976 | None:intergenic | 35.0% | |
| ATCATAAACGTATACCTGAG+TGG | + | chr8_4:49572013-49572032 | None:intergenic | 35.0% | |
| ! | AAAGTATCAACATTCCAGAG+TGG | + | chr8_4:49572038-49572057 | None:intergenic | 35.0% |
| !! | TTTTGAAGAGGGTGTGTTTT+AGG | - | chr8_4:49572099-49572118 | Msa1330430:intron | 35.0% |
| GAGAGAATAAAGAAGGGTTA+TGG | - | chr8_4:49572222-49572241 | Msa1330430:intron | 35.0% | |
| GACAACAAGAATACAAGCTA+GGG | + | chr8_4:49572252-49572271 | None:intergenic | 35.0% | |
| TGACAACAAGAATACAAGCT+AGG | + | chr8_4:49572253-49572272 | None:intergenic | 35.0% | |
| ATCAACTCTTGGAAGGTAAA+AGG | + | chr8_4:49572335-49572354 | None:intergenic | 35.0% | |
| ! | TTTTACCTTCCAAGAGTTGA+TGG | - | chr8_4:49572334-49572353 | Msa1330430:intron | 35.0% |
| ! | TTTACCTTCCAAGAGTTGAT+GGG | - | chr8_4:49572335-49572354 | Msa1330430:intron | 35.0% |
| ! | CTTACGAAAGGTGTAATAGA+GGG | - | chr8_4:49572371-49572390 | Msa1330430:intron | 35.0% |
| GACTGTTCCAATGTAATATC+TGG | - | chr8_4:49572431-49572450 | Msa1330430:intron | 35.0% | |
| CTGTTCCAATGTAATATCTG+GGG | - | chr8_4:49572433-49572452 | Msa1330430:intron | 35.0% | |
| TGTTCCAATGTAATATCTGG+GGG | - | chr8_4:49572434-49572453 | Msa1330430:intron | 35.0% | |
| TTTACCCCCAGATATTACAT+TGG | + | chr8_4:49572441-49572460 | None:intergenic | 35.0% | |
| ! | TTTAAGGCCTTCACGTATTT+GGG | + | chr8_4:49572572-49572591 | None:intergenic | 35.0% |
| !!! | TTTTAAGGCCTTCACGTATT+TGG | + | chr8_4:49572573-49572592 | None:intergenic | 35.0% |
| AATACGTGAAGGCCTTAAAA+AGG | - | chr8_4:49572573-49572592 | Msa1330430:intron | 35.0% | |
| ! | TGAAGGCCTTAAAAAGGTTT+TGG | - | chr8_4:49572579-49572598 | Msa1330430:intron | 35.0% |
| ! | GAAGGCCTTAAAAAGGTTTT+GGG | - | chr8_4:49572580-49572599 | Msa1330430:intron | 35.0% |
| ! | AAGGCCTTAAAAAGGTTTTG+GGG | - | chr8_4:49572581-49572600 | Msa1330430:intron | 35.0% |
| ATCTCAAGCAATTCAGTAAG+CGG | + | chr8_4:49572659-49572678 | None:intergenic | 35.0% | |
| ATAACTTAACTGTCTGTCCT+AGG | - | chr8_4:49572729-49572748 | Msa1330430:intron | 35.0% | |
| TAAAAGCCATGACCAAATCT+GGG | + | chr8_4:49572766-49572785 | None:intergenic | 35.0% | |
| ATAAAAGCCATGACCAAATC+TGG | + | chr8_4:49572767-49572786 | None:intergenic | 35.0% | |
| TGATGTTTCGAGAAATGCTT+GGG | - | chr8_4:49572796-49572815 | Msa1330430:intron | 35.0% | |
| !! | AATGGAGGCATTATCTAATG+GGG | - | chr8_4:49572957-49572976 | Msa1330430:intron | 35.0% |
| ATGCTAAAAGAACGGTAACT+TGG | - | chr8_4:49573067-49573086 | Msa1330430:CDS | 35.0% | |
| GGAGTCATAAAACCTAGAAA+AGG | + | chr8_4:49573127-49573146 | None:intergenic | 35.0% | |
| !! | TAGGTTTTATGACTCCTTCT+TGG | - | chr8_4:49573131-49573150 | Msa1330430:CDS | 35.0% |
| !! | AGGTTTTATGACTCCTTCTT+GGG | - | chr8_4:49573132-49573151 | Msa1330430:CDS | 35.0% |
| TGTATCATATGTGACAGACT+AGG | - | chr8_4:49573302-49573321 | Msa1330430:CDS | 35.0% | |
| ! | ACTGACGGTTACATGATTTT+GGG | + | chr8_4:49573557-49573576 | None:intergenic | 35.0% |
| AAAAAAGCTCCAACGTGTTG+TGG | + | chr8_4:49568834-49568853 | None:intergenic | 40.0% | |
| GAAGGATTTGGAAAAGGAAG+CGG | + | chr8_4:49568984-49569003 | None:intergenic | 40.0% | |
| GGATTGGAAGGATTTGGAAA+AGG | + | chr8_4:49568990-49569009 | None:intergenic | 40.0% | |
| ! | CTAAAGACCTTGAGTTTTCG+CGG | + | chr8_4:49569035-49569054 | None:intergenic | 40.0% |
| GCGAAAACTCAAGGTCTTTA+GGG | - | chr8_4:49569034-49569053 | Msa1330430:three_prime_UTR | 40.0% | |
| GAAGGAAGTGGAAGATGAAT+TGG | - | chr8_4:49569158-49569177 | Msa1330430:three_prime_UTR | 40.0% | |
| CTTGCAGGTTCGTTTGTATT+TGG | - | chr8_4:49569189-49569208 | Msa1330430:CDS | 40.0% | |
| TTCAGAAAAGACGCGTAAAG+AGG | - | chr8_4:49569279-49569298 | Msa1330430:intron | 40.0% | |
| TTTCTATCGCAGCAATCACT+CGG | - | chr8_4:49569409-49569428 | Msa1330430:intron | 40.0% | |
| CTATAAATTGCGGCATTTGC+AGG | + | chr8_4:49569451-49569470 | None:intergenic | 40.0% | |
| ! | ATTCACACTCTGTTTGGTGA+AGG | - | chr8_4:49569498-49569517 | Msa1330430:intron | 40.0% |
| TGATGTCAACAACCATGGAT+TGG | + | chr8_4:49569754-49569773 | None:intergenic | 40.0% | |
| TACTATGAGGTTGTCATGTC+TGG | - | chr8_4:49569858-49569877 | Msa1330430:intron | 40.0% | |
| !!! | TTTTGGGGTTTCTGTTTGCT+GGG | - | chr8_4:49570160-49570179 | Msa1330430:intron | 40.0% |
| ATCTCAACCAAGTGACTTCT+CGG | - | chr8_4:49570249-49570268 | Msa1330430:intron | 40.0% | |
| GGAAGTGAGCATCATGATAT+CGG | + | chr8_4:49570482-49570501 | None:intergenic | 40.0% | |
| ATTAAAAGAGAAGATGGGGG+AGG | + | chr8_4:49570776-49570795 | None:intergenic | 40.0% | |
| ACATACAGATGAAACACAGG+AGG | - | chr8_4:49570846-49570865 | Msa1330430:intron | 40.0% | |
| TACCCTGTTATACCAAGAGA+TGG | + | chr8_4:49570872-49570891 | None:intergenic | 40.0% | |
| ! | TCTTGGTATAACAGGGTACT+TGG | - | chr8_4:49570874-49570893 | Msa1330430:intron | 40.0% |
| !! | CTTGGTTTTCATGTCAAAGG+GGG | - | chr8_4:49570892-49570911 | Msa1330430:intron | 40.0% |
| TCTTCAATACCATCGAAGGA+AGG | + | chr8_4:49571199-49571218 | None:intergenic | 40.0% | |
| ATGAGTGTATGCATGTGATG+CGG | - | chr8_4:49571332-49571351 | Msa1330430:intron | 40.0% | |
| GATATAAAGGCAGATTCTCC+AGG | + | chr8_4:49571768-49571787 | None:intergenic | 40.0% | |
| AGGAGCGGATGAAGATATAA+AGG | + | chr8_4:49571781-49571800 | None:intergenic | 40.0% | |
| TTTATATCTTCATCCGCTCC+TGG | - | chr8_4:49571780-49571799 | Msa1330430:intron | 40.0% | |
| ! | CACTTCATGCTCATTTTCCA+TGG | + | chr8_4:49571832-49571851 | None:intergenic | 40.0% |
| CATGGAAAATGAGCATGAAG+TGG | - | chr8_4:49571830-49571849 | Msa1330430:intron | 40.0% | |
| AGTTCGCAGAAGGAAAAGTT+TGG | - | chr8_4:49571890-49571909 | Msa1330430:intron | 40.0% | |
| TACGTTTATGATCACCACTC+TGG | - | chr8_4:49572021-49572040 | Msa1330430:intron | 40.0% | |
| TCTGATTCTGGCATGTCATT+TGG | - | chr8_4:49572296-49572315 | Msa1330430:intron | 40.0% | |
| GAATTGTGAAGGCTTACGAA+AGG | - | chr8_4:49572359-49572378 | Msa1330430:intron | 40.0% | |
| ! | GCTTACGAAAGGTGTAATAG+AGG | - | chr8_4:49572370-49572389 | Msa1330430:intron | 40.0% |
| ACAGTCGAAAAACCTTCTTC+AGG | + | chr8_4:49572417-49572436 | None:intergenic | 40.0% | |
| TGAAGAAGCTGTAGTGTCTT+TGG | - | chr8_4:49572474-49572493 | Msa1330430:intron | 40.0% | |
| GCCAAATTGCGTCACAAAAT+GGG | - | chr8_4:49572496-49572515 | Msa1330430:intron | 40.0% | |
| CCAAATTGCGTCACAAAATG+GGG | - | chr8_4:49572497-49572516 | Msa1330430:intron | 40.0% | |
| TTAAGGCCTTCACGTATTTG+GGG | + | chr8_4:49572571-49572590 | None:intergenic | 40.0% | |
| !! | AGGCCTTAAAAAGGTTTTGG+GGG | - | chr8_4:49572582-49572601 | Msa1330430:intron | 40.0% |
| ! | CAACCCCCAAAACCTTTTTA+AGG | + | chr8_4:49572588-49572607 | None:intergenic | 40.0% |
| !!! | AAAAGGTTTTGGGGGTTGAT+AGG | - | chr8_4:49572590-49572609 | Msa1330430:intron | 40.0% |
| AAGCAATTCAGTAAGCGGTT+TGG | + | chr8_4:49572654-49572673 | None:intergenic | 40.0% | |
| CTGATGTTTCGAGAAATGCT+TGG | - | chr8_4:49572795-49572814 | Msa1330430:intron | 40.0% | |
| TTCCTTGCCTAACAACTATC+AGG | - | chr8_4:49572853-49572872 | Msa1330430:intron | 40.0% | |
| TCCTTGCCTAACAACTATCA+GGG | - | chr8_4:49572854-49572873 | Msa1330430:intron | 40.0% | |
| AGAGCTAATGACTATAGTGC+AGG | - | chr8_4:49572906-49572925 | Msa1330430:intron | 40.0% | |
| TTAAGTGCAGTTGAGTAGGT+CGG | + | chr8_4:49573095-49573114 | None:intergenic | 40.0% | |
| TACTCAACTGCACTTAACCT+GGG | - | chr8_4:49573098-49573117 | Msa1330430:CDS | 40.0% | |
| TACGATTCTTGTGCAGAACT+CGG | - | chr8_4:49573270-49573289 | Msa1330430:intron | 40.0% | |
| TCAGCATGTAGCATCAAATG+AGG | + | chr8_4:49573354-49573373 | None:intergenic | 40.0% | |
| TTCCAGACGTATCTATGTTC+CGG | - | chr8_4:49573439-49573458 | Msa1330430:intron | 40.0% | |
| CCAGAACTACATTGACATCA+TGG | + | chr8_4:49573485-49573504 | None:intergenic | 40.0% | |
| CCATGATGTCAATGTAGTTC+TGG | - | chr8_4:49573482-49573501 | Msa1330430:CDS | 40.0% | |
| ! | GACTGACGGTTACATGATTT+TGG | + | chr8_4:49573558-49573577 | None:intergenic | 40.0% |
| TCATGTAACCGTCAGTCATT+AGG | - | chr8_4:49573561-49573580 | Msa1330430:CDS | 40.0% | |
| CATGTAACCGTCAGTCATTA+GGG | - | chr8_4:49573562-49573581 | Msa1330430:CDS | 40.0% | |
| AACATTGGATACGAGTGAGG+AGG | - | chr8_4:49568874-49568893 | Msa1330430:three_prime_UTR | 45.0% | |
| TGAGGAGGAGAACAGAAAGA+TGG | - | chr8_4:49568889-49568908 | Msa1330430:three_prime_UTR | 45.0% | |
| !!! | GGTGGTTTTGATGGATTGGA+AGG | + | chr8_4:49569002-49569021 | None:intergenic | 45.0% |
| !!! | TTGTTGTGCGGTGGTTTTGA+TGG | + | chr8_4:49569011-49569030 | None:intergenic | 45.0% |
| !!! | AGTTTTCGCGGTTTGTTGTG+CGG | + | chr8_4:49569023-49569042 | None:intergenic | 45.0% |
| CAACAAACCGCGAAAACTCA+AGG | - | chr8_4:49569025-49569044 | Msa1330430:three_prime_UTR | 45.0% | |
| CGCGAAAACTCAAGGTCTTT+AGG | - | chr8_4:49569033-49569052 | Msa1330430:three_prime_UTR | 45.0% | |
| GGATGCTATTGCTTCTGCTA+AGG | - | chr8_4:49569321-49569340 | Msa1330430:intron | 45.0% | |
| GTATTCAAGAGGTTCGAACG+AGG | - | chr8_4:49569368-49569387 | Msa1330430:intron | 45.0% | |
| ! | GAATTGACTTAGTGCCCGTT+TGG | - | chr8_4:49569527-49569546 | Msa1330430:intron | 45.0% |
| !!! | GTTTTGGGGTTTCTGTTTGC+TGG | - | chr8_4:49570159-49570178 | Msa1330430:intron | 45.0% |
| ! | TCTGTTTGCTGGGTGGTTAT+TGG | - | chr8_4:49570170-49570189 | Msa1330430:intron | 45.0% |
| GTTTACTACATCTCTGGTGC+CGG | - | chr8_4:49570192-49570211 | Msa1330430:intron | 45.0% | |
| TTTACTACATCTCTGGTGCC+GGG | - | chr8_4:49570193-49570212 | Msa1330430:intron | 45.0% | |
| CTCTTCAACCTCGAGAAACT+TGG | + | chr8_4:49570226-49570245 | None:intergenic | 45.0% | |
| TCTCAACCAAGTGACTTCTC+GGG | - | chr8_4:49570250-49570269 | Msa1330430:intron | 45.0% | |
| GATGCTGCCAGAGTTTCATA+TGG | + | chr8_4:49570799-49570818 | None:intergenic | 45.0% | |
| AAACTCTGGCAGCATCTGAA+GGG | - | chr8_4:49570803-49570822 | Msa1330430:intron | 45.0% | |
| ATCTGAAGGGAGGTTGAATG+AGG | - | chr8_4:49570816-49570835 | Msa1330430:intron | 45.0% | |
| TCTGAAGGGAGGTTGAATGA+GGG | - | chr8_4:49570817-49570836 | Msa1330430:intron | 45.0% | |
| AGGCCATCTCTTGGTATAAC+AGG | - | chr8_4:49570866-49570885 | Msa1330430:intron | 45.0% | |
| GGCCATCTCTTGGTATAACA+GGG | - | chr8_4:49570867-49570886 | Msa1330430:intron | 45.0% | |
| CAGCTCTTCAATACCATCGA+AGG | + | chr8_4:49571203-49571222 | None:intergenic | 45.0% | |
| ! | CTTCGATGGTATTGAAGAGC+TGG | - | chr8_4:49571201-49571220 | Msa1330430:CDS | 45.0% |
| TCACTTCTAACAGATGTGCC+AGG | + | chr8_4:49571801-49571820 | None:intergenic | 45.0% | |
| ATACCTTCAAACGTGGAGAC+TGG | + | chr8_4:49571950-49571969 | None:intergenic | 45.0% | |
| AGTCAGCTGCTATCTGATTC+TGG | - | chr8_4:49572284-49572303 | Msa1330430:intron | 45.0% | |
| ACAATTCGCCCATCAACTCT+TGG | + | chr8_4:49572346-49572365 | None:intergenic | 45.0% | |
| !! | AGTTGATGGGCGAATTGTGA+AGG | - | chr8_4:49572348-49572367 | Msa1330430:intron | 45.0% |
| GGCCAAATTGCGTCACAAAA+TGG | - | chr8_4:49572495-49572514 | Msa1330430:intron | 45.0% | |
| ! | CCCCATTTTGTGACGCAATT+TGG | + | chr8_4:49572500-49572519 | None:intergenic | 45.0% |
| TCACAAAATGGGGTTGCTGT+AGG | - | chr8_4:49572507-49572526 | Msa1330430:intron | 45.0% | |
| TGTTAGGCAAGGAAAGCTAG+AGG | + | chr8_4:49572847-49572866 | None:intergenic | 45.0% | |
| TCCCTGATAGTTGTTAGGCA+AGG | + | chr8_4:49572858-49572877 | None:intergenic | 45.0% | |
| TTGCCTAACAACTATCAGGG+AGG | - | chr8_4:49572857-49572876 | Msa1330430:intron | 45.0% | |
| TGCCTAACAACTATCAGGGA+GGG | - | chr8_4:49572858-49572877 | Msa1330430:intron | 45.0% | |
| TTCCCTCCCTGATAGTTGTT+AGG | + | chr8_4:49572863-49572882 | None:intergenic | 45.0% | |
| GTCAGCAGTCAGTGTGTAAA+TGG | - | chr8_4:49572939-49572958 | Msa1330430:intron | 45.0% | |
| AGCAGTCAGTGTGTAAATGG+AGG | - | chr8_4:49572942-49572961 | Msa1330430:intron | 45.0% | |
| CAGGTTAAGTGCAGTTGAGT+AGG | + | chr8_4:49573099-49573118 | None:intergenic | 45.0% | |
| CTACTCAACTGCACTTAACC+TGG | - | chr8_4:49573097-49573116 | Msa1330430:CDS | 45.0% | |
| ACTCAACTGCACTTAACCTG+GGG | - | chr8_4:49573099-49573118 | Msa1330430:CDS | 45.0% | |
| ! | TAACCTGGGGTTCCTTTTCT+AGG | - | chr8_4:49573112-49573131 | Msa1330430:CDS | 45.0% |
| AAACCTAGAAAAGGAACCCC+AGG | + | chr8_4:49573118-49573137 | None:intergenic | 45.0% | |
| GCATGTAGCATCAAATGAGG+TGG | + | chr8_4:49573351-49573370 | None:intergenic | 45.0% | |
| AATTGCCTGCAAGAGAACCT+CGG | + | chr8_4:49573382-49573401 | None:intergenic | 45.0% | |
| AACCGGAACATAGATACGTC+TGG | + | chr8_4:49573444-49573463 | None:intergenic | 45.0% | |
| TATCACGCCCTAATGACTGA+CGG | + | chr8_4:49573572-49573591 | None:intergenic | 45.0% | |
| AAGCTCCAACGTGTTGTGGT+GGG | + | chr8_4:49568830-49568849 | None:intergenic | 50.0% | |
| AAAGCTCCAACGTGTTGTGG+TGG | + | chr8_4:49568831-49568850 | None:intergenic | 50.0% | |
| TGTGATTTCTGCTTCGCAGC+GGG | + | chr8_4:49568933-49568952 | None:intergenic | 50.0% | |
| GTGTGATTTCTGCTTCGCAG+CGG | + | chr8_4:49568934-49568953 | None:intergenic | 50.0% | |
| !!! | GTGCGGTGGTTTTGATGGAT+TGG | + | chr8_4:49569006-49569025 | None:intergenic | 50.0% |
| GCGTAAAGAGGCTAAGCGAA+TGG | - | chr8_4:49569291-49569310 | Msa1330430:intron | 50.0% | |
| !! | GGCTAAGCGAATGGCTTTGT+TGG | - | chr8_4:49569300-49569319 | Msa1330430:intron | 50.0% |
| GCTTCTGCTAAGGCTAGAGT+TGG | - | chr8_4:49569331-49569350 | Msa1330430:intron | 50.0% | |
| GCGGCATTTGCAGGAAAAAG+AGG | + | chr8_4:49569442-49569461 | None:intergenic | 50.0% | |
| GACTTAGTGCCCGTTTGGAT+TGG | - | chr8_4:49569532-49569551 | Msa1330430:intron | 50.0% | |
| ! | GAGAAACTTGGTTCGAGACC+CGG | + | chr8_4:49570214-49570233 | None:intergenic | 50.0% |
| GTCTCGAACCAAGTTTCTCG+AGG | - | chr8_4:49570215-49570234 | Msa1330430:intron | 50.0% | |
| GAAACTCTGGCAGCATCTGA+AGG | - | chr8_4:49570802-49570821 | Msa1330430:intron | 50.0% | |
| AAACACAGGAGGCCATCTCT+TGG | - | chr8_4:49570857-49570876 | Msa1330430:intron | 50.0% | |
| TTTCATGTCAAAGGGGGACG+TGG | - | chr8_4:49570898-49570917 | Msa1330430:intron | 50.0% | |
| CGTTGTGAACCTTCCTTCGA+TGG | - | chr8_4:49571187-49571206 | Msa1330430:intron | 50.0% | |
| ! | GATGCGGTAGCTCTGCATAT+TGG | - | chr8_4:49571348-49571367 | Msa1330430:intron | 50.0% |
| TCTAACAGATGTGCCAGGAG+CGG | + | chr8_4:49571796-49571815 | None:intergenic | 50.0% | |
| TTCGCCCATCAACTCTTGGA+AGG | + | chr8_4:49572342-49572361 | None:intergenic | 50.0% | |
| AGGTGCTCAACGAGTTCTTG+TGG | + | chr8_4:49572397-49572416 | None:intergenic | 50.0% | |
| ACTCGTTGAGCACCTGAAGA+AGG | - | chr8_4:49572402-49572421 | Msa1330430:intron | 50.0% | |
| GCTCTTAGCAGTCCCAGATT+TGG | - | chr8_4:49572751-49572770 | Msa1330430:intron | 50.0% | |
| ! | AGCAGTCCCAGATTTGGTCA+TGG | - | chr8_4:49572757-49572776 | Msa1330430:intron | 50.0% |
| !! | GGAGGCATTATCTAATGGGG+AGG | - | chr8_4:49572960-49572979 | Msa1330430:intron | 50.0% |
| TATGACTCCTTCTTGGGTCC+TGG | - | chr8_4:49573138-49573157 | Msa1330430:CDS | 50.0% | |
| ATTGCCTGCAAGAGAACCTC+GGG | + | chr8_4:49573381-49573400 | None:intergenic | 50.0% | |
| AGCTCCAACGTGTTGTGGTG+GGG | + | chr8_4:49568829-49568848 | None:intergenic | 55.0% | |
| !! | TTCTGCTTCGCAGCGGGTTA+AGG | + | chr8_4:49568927-49568946 | None:intergenic | 55.0% |
| !! | TTTCGCGGTTTGTTGTGCGG+TGG | + | chr8_4:49569020-49569039 | None:intergenic | 55.0% |
| ! | TGGGGTTTCTGTTTGCTGGG+TGG | - | chr8_4:49570163-49570182 | Msa1330430:intron | 55.0% |
| CTGTCTCCCGAGAAGTCACT+TGG | + | chr8_4:49570259-49570278 | None:intergenic | 55.0% | |
| CAAGTGACTTCTCGGGAGAC+AGG | - | chr8_4:49570257-49570276 | Msa1330430:intron | 55.0% | |
| ACTTCTCGGGAGACAGGCAT+TGG | - | chr8_4:49570263-49570282 | Msa1330430:intron | 55.0% | |
| GAGCATGAAGTGGAACGCTC+TGG | - | chr8_4:49571840-49571859 | Msa1330430:intron | 55.0% | |
| TCGCCAGTCTCCACGTTTGA+AGG | - | chr8_4:49571944-49571963 | Msa1330430:intron | 55.0% | |
| ! | TCTGGGACTGCTAAGAGCCT+AGG | + | chr8_4:49572749-49572768 | None:intergenic | 55.0% |
| TTGCCTGCAAGAGAACCTCG+GGG | + | chr8_4:49573380-49573399 | None:intergenic | 55.0% | |
| !! | TGCTTCGCAGCGGGTTAAGG+AGG | + | chr8_4:49568924-49568943 | None:intergenic | 60.0% |
| GAGAAGATGGGGGAGGTGAG+AGG | + | chr8_4:49570769-49570788 | None:intergenic | 60.0% | |
| CTCTGGCAGCATCTGAAGGG+AGG | - | chr8_4:49570806-49570825 | Msa1330430:intron | 60.0% | |
| GGCCTGCCCCAAATACGTGA+AGG | - | chr8_4:49572562-49572581 | Msa1330430:intron | 60.0% | |
| ! | GGCCTTCACGTATTTGGGGC+AGG | + | chr8_4:49572567-49572586 | None:intergenic | 60.0% |
| ! | TAAAGCACCCCAGGACCAGG+AGG | + | chr8_4:49573164-49573183 | None:intergenic | 60.0% |
| ! | TCCTGGTCCTGGGGTGCTTT+AGG | - | chr8_4:49573163-49573182 | Msa1330430:CDS | 60.0% |
| ! | TGGGGTGCTTTAGGCGTGCA+GGG | - | chr8_4:49573172-49573191 | Msa1330430:CDS | 60.0% |
| CTGGCCCCACCACAACACGT+TGG | - | chr8_4:49568822-49568841 | Msa1330430:three_prime_UTR | 65.0% | |
| !! | GGAAGCGGCGAAAGCGTCGA+CGG | + | chr8_4:49568969-49568988 | None:intergenic | 65.0% |
| CAGGAGGCCAGGACCCAAGA+AGG | + | chr8_4:49573148-49573167 | None:intergenic | 65.0% | |
| CTTCTTGGGTCCTGGCCTCC+TGG | - | chr8_4:49573146-49573165 | Msa1330430:CDS | 65.0% | |
| ! | GCCTAAAGCACCCCAGGACC+AGG | + | chr8_4:49573167-49573186 | None:intergenic | 65.0% |
| ! | CTGCACGCCTAAAGCACCCC+AGG | + | chr8_4:49573173-49573192 | None:intergenic | 65.0% |
| ! | CTGGGGTGCTTTAGGCGTGC+AGG | - | chr8_4:49573171-49573190 | Msa1330430:CDS | 65.0% |
| GCTACATGCTGAGCTCCCCG+AGG | - | chr8_4:49573362-49573381 | Msa1330430:intron | 65.0% | |
| GCTCCCCGAGGTTCTCTTGC+AGG | - | chr8_4:49573374-49573393 | Msa1330430:intron | 65.0% | |
| !! | CGGCGAAAGCGTCGACGGTG+TGG | + | chr8_4:49568964-49568983 | None:intergenic | 70.0% |
| GGTCCTGGCCTCCTGGTCCT+GGG | - | chr8_4:49573153-49573172 | Msa1330430:CDS | 70.0% | |
| GTCCTGGCCTCCTGGTCCTG+GGG | - | chr8_4:49573154-49573173 | Msa1330430:CDS | 70.0% | |
| GGGTCCTGGCCTCCTGGTCC+TGG | - | chr8_4:49573152-49573171 | Msa1330430:CDS | 75.0% | |
| CACCCCAGGACCAGGAGGCC+AGG | + | chr8_4:49573159-49573178 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 49568795 | 49573702 | 49568795 | ID=Msa1330430;Name=Msa1330430 |
| chr8_4 | mRNA | 49568795 | 49573702 | 49568795 | ID=Msa1330430-mRNA-1;Parent=Msa1330430;Name=Msa1330430-mRNA-1;_AED=0.03;_eAED=0.03;_QI=113|1|1|1|0.85|0.87|8|387|308 |
| chr8_4 | exon | 49568795 | 49569211 | 49568795 | ID=Msa1330430-mRNA-1:exon:14354;Parent=Msa1330430-mRNA-1 |
| chr8_4 | exon | 49570532 | 49570758 | 49570532 | ID=Msa1330430-mRNA-1:exon:14353;Parent=Msa1330430-mRNA-1 |
| chr8_4 | exon | 49571193 | 49571315 | 49571193 | ID=Msa1330430-mRNA-1:exon:14352;Parent=Msa1330430-mRNA-1 |
| chr8_4 | exon | 49571402 | 49571491 | 49571402 | ID=Msa1330430-mRNA-1:exon:14351;Parent=Msa1330430-mRNA-1 |
| chr8_4 | exon | 49571578 | 49571682 | 49571578 | ID=Msa1330430-mRNA-1:exon:14350;Parent=Msa1330430-mRNA-1 |
| chr8_4 | exon | 49573067 | 49573213 | 49573067 | ID=Msa1330430-mRNA-1:exon:14349;Parent=Msa1330430-mRNA-1 |
| chr8_4 | exon | 49573302 | 49573367 | 49573302 | ID=Msa1330430-mRNA-1:exon:14348;Parent=Msa1330430-mRNA-1 |
| chr8_4 | exon | 49573451 | 49573702 | 49573451 | ID=Msa1330430-mRNA-1:exon:14347;Parent=Msa1330430-mRNA-1 |
| chr8_4 | five_prime_UTR | 49573590 | 49573702 | 49573590 | ID=Msa1330430-mRNA-1:five_prime_utr;Parent=Msa1330430-mRNA-1 |
| chr8_4 | CDS | 49573451 | 49573589 | 49573451 | ID=Msa1330430-mRNA-1:cds;Parent=Msa1330430-mRNA-1 |
| chr8_4 | CDS | 49573302 | 49573367 | 49573302 | ID=Msa1330430-mRNA-1:cds;Parent=Msa1330430-mRNA-1 |
| chr8_4 | CDS | 49573067 | 49573213 | 49573067 | ID=Msa1330430-mRNA-1:cds;Parent=Msa1330430-mRNA-1 |
| chr8_4 | CDS | 49571578 | 49571682 | 49571578 | ID=Msa1330430-mRNA-1:cds;Parent=Msa1330430-mRNA-1 |
| chr8_4 | CDS | 49571402 | 49571491 | 49571402 | ID=Msa1330430-mRNA-1:cds;Parent=Msa1330430-mRNA-1 |
| chr8_4 | CDS | 49571193 | 49571315 | 49571193 | ID=Msa1330430-mRNA-1:cds;Parent=Msa1330430-mRNA-1 |
| chr8_4 | CDS | 49570532 | 49570758 | 49570532 | ID=Msa1330430-mRNA-1:cds;Parent=Msa1330430-mRNA-1 |
| chr8_4 | CDS | 49569182 | 49569211 | 49569182 | ID=Msa1330430-mRNA-1:cds;Parent=Msa1330430-mRNA-1 |
| chr8_4 | three_prime_UTR | 49568795 | 49569181 | 49568795 | ID=Msa1330430-mRNA-1:three_prime_utr;Parent=Msa1330430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
