AlfalfaGEDB | Msa1330940

M. sativa cultivar zhongmu-4 / Msa1330940

KEGG: -
GO: GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905393 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141
PFAM: PF03634.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1330940	XP_013458053.1	97.436	390	6	4	1	388	1	388	0.0	768

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1330940	sp\|Q8LN68\|TB1_ORYSJ	42.038	157	74	2	131	270	115	271	1.91e-26	112

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1330940	A0A072UQH4	97.436	390	6	4	1	388	1	388	0.0	768

TFs/TRs:

Gene ID	Type	Classification
Msa1330940	TF	TCP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1214510	Msa1330940	0.871724	5.495485e-67	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1330940	MtrunA17_Chr4g0062691	97.436	390	6	4	1	388	1	388	0.0	768
Msa1330940	MtrunA17_Chr6g0456881	41.176	170	85	3	110	266	105	272	1.39e-28	115
Msa1330940	MtrunA17_Chr7g0220931	66.129	62	21	0	133	194	122	183	3.29e-21	94.0
Msa1330940	MtrunA17_Chr1g0205131	55.696	79	33	1	119	195	95	173	1.27e-19	89.7
Msa1330940	MtrunA17_Chr8g0376571	35.329	167	83	6	127	268	57	223	3.07e-17	83.2
Msa1330940	MtrunA17_Chr8g0360441	45.918	98	51	2	109	205	31	127	4.82e-17	82.4
Msa1330940	MtrunA17_Chr7g0219461	32.035	231	129	9	132	358	58	264	1.08e-16	80.5
Msa1330940	MtrunA17_Chr2g0316391	48.718	78	39	1	113	190	3	79	3.16e-15	75.5
Msa1330940	MtrunA17_Chr6g0454781	58.621	58	24	0	132	189	50	107	4.81e-15	75.5
Msa1330940	MtrunA17_Chr4g0040921	50.000	64	32	0	127	190	18	81	7.16e-15	75.1
Msa1330940	MtrunA17_Chr3g0086961	33.099	142	87	2	132	268	58	196	1.61e-14	74.3
Msa1330940	MtrunA17_Chr2g0325171	49.206	63	32	0	127	189	20	82	1.95e-14	73.6
Msa1330940	MtrunA17_Chr4g0061561	48.276	58	30	0	132	189	58	115	4.30e-12	66.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1330940	AT3G18550.1	31.579	304	160	9	1	263	5	301	3.25e-25	106
Msa1330940	AT3G18550.4	31.579	304	160	9	1	263	5	301	3.25e-25	106
Msa1330940	AT3G18550.3	32.131	305	157	11	1	263	5	301	4.26e-25	106
Msa1330940	AT3G18550.2	36.538	208	109	5	1	190	5	207	7.85e-25	105
Msa1330940	AT1G67260.2	51.546	97	39	1	108	196	56	152	1.19e-23	101
Msa1330940	AT1G67260.3	51.546	97	39	1	108	196	56	152	1.19e-23	101
Msa1330940	AT1G67260.1	51.546	97	39	1	108	196	56	152	1.44e-23	100
Msa1330940	AT1G68800.2	65.217	69	23	1	122	189	102	170	2.05e-22	97.8
Msa1330940	AT1G68800.1	65.217	69	23	1	122	189	102	170	2.29e-22	97.4
Msa1330940	AT4G18390.1	35.519	183	78	6	127	293	38	196	1.05e-19	90.1
Msa1330940	AT4G18390.2	35.519	183	78	6	127	293	38	196	1.05e-19	90.1
Msa1330940	AT3G15030.2	44.898	98	53	1	94	190	7	104	3.83e-17	83.2
Msa1330940	AT3G15030.4	44.898	98	53	1	94	190	7	104	3.83e-17	83.2
Msa1330940	AT3G15030.3	44.898	98	53	1	94	190	7	104	3.83e-17	83.2
Msa1330940	AT3G15030.1	44.898	98	53	1	94	190	7	104	3.83e-17	83.2
Msa1330940	AT1G53230.1	49.383	81	40	1	112	191	29	109	5.95e-16	79.3
Msa1330940	AT1G53230.2	49.383	81	40	1	112	191	29	109	5.95e-16	79.3
Msa1330940	AT1G30210.2	36.879	141	65	3	127	267	46	162	8.12e-15	75.1
Msa1330940	AT1G30210.1	36.879	141	65	3	127	267	46	162	8.12e-15	75.1
Msa1330940	AT2G31070.1	45.000	80	43	1	111	189	8	87	5.28e-14	73.2
Msa1330940	AT3G02150.1	53.448	58	27	0	132	189	75	132	2.19e-13	70.5
Msa1330940	AT3G02150.2	53.448	58	27	0	132	189	75	132	4.09e-13	70.5
Msa1330940	AT5G60970.1	50.000	58	29	0	132	189	64	121	9.95e-13	69.3
Msa1330940	AT5G08070.2	48.276	58	30	0	132	189	34	91	1.72e-11	64.3
Msa1330940	AT5G08070.1	48.276	58	30	0	132	189	34	91	1.72e-11	64.3

Find 83 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCAATATCATCAGGATAATT+AGG	0.171473	8_4:+50255681	None:intergenic
TTATTTCTTTCCTTTCCTTT+TGG	0.203378	8_4:-50254482	Msa1330940:three_prime_UTR
GAGAAGAAATAGTACTAATA+AGG	0.277919	8_4:-50255136	Msa1330940:CDS
CTGTTTGTTGAATACATATC+TGG	0.295320	8_4:+50255840	None:intergenic
GAGAAAGGAGGAAGAGGAAA+GGG	0.310050	8_4:+50255717	None:intergenic
TCTGTTCCAGACCTTGAAAT+TGG	0.320873	8_4:-50254352	Msa1330940:three_prime_UTR
TTGCTTTCAAAGGAACAAAA+AGG	0.336731	8_4:+50255777	None:intergenic
GTGAGGTATCTTCAGAATTT+CGG	0.343155	8_4:-50254448	Msa1330940:three_prime_UTR
CATGTTGTTGGAGGAAGATT+TGG	0.344830	8_4:+50255640	None:intergenic
TTTGGTCTTCAAGATATGTT+AGG	0.353164	8_4:-50255357	Msa1330940:CDS
TGAGCCTGACTGACACAAAA+AGG	0.360607	8_4:+50254532	None:intergenic
GTAAACTTGTACCAATTTCA+AGG	0.367038	8_4:+50254341	None:intergenic
AGAAAGGAGGAAGAGGAAAG+GGG	0.382698	8_4:+50255718	None:intergenic
GATATATTTATAATACTGTT+TGG	0.387916	8_4:-50255902	Msa1330940:five_prime_UTR
AAGGTGTTTGATCTCAAGTT+TGG	0.394081	8_4:+50255290	None:intergenic
AAAGGAGGTGGTGATGATAA+GGG	0.399159	8_4:+50254550	None:intergenic
CTTGTACCAATTTCAAGGTC+TGG	0.400669	8_4:+50254346	None:intergenic
TGCTAGGTTATTTCCATTGA+GGG	0.401156	8_4:+50255815	None:intergenic
CAATATCATCAGGATAATTA+GGG	0.427407	8_4:+50255682	None:intergenic
AAAAGGAGGTGGTGATGATA+AGG	0.428540	8_4:+50254549	None:intergenic
AGAGAAAGGAGGAAGAGGAA+AGG	0.429249	8_4:+50255716	None:intergenic
AATTTGAACTTACTTGTTGA+AGG	0.433582	8_4:+50254743	None:intergenic
GCTTTGATTGTTGAGTTTGA+AGG	0.434606	8_4:+50255546	None:intergenic
CTTCCTGCAGCTGCTGGTAA+AGG	0.436015	8_4:-50255510	Msa1330940:CDS
TCAAGCTTGGATAATGAAGT+TGG	0.437838	8_4:-50255198	Msa1330940:CDS
TTGTTATTCATCATCACAAC+AGG	0.440557	8_4:+50255591	None:intergenic
GTTGAAGATGCACTCTTAGT+AGG	0.445865	8_4:+50255243	None:intergenic
CTTTGTTCATTATGAGCAAA+TGG	0.450640	8_4:-50254798	Msa1330940:CDS
TTGAGAGAATTGAACATCAT+AGG	0.458304	8_4:+50254769	None:intergenic
CATCAAGACATGTACTAGCT+AGG	0.462310	8_4:-50255958	Msa1330940:five_prime_UTR
GGAAATCAACATCATGTTGT+TGG	0.463207	8_4:+50255628	None:intergenic
TCAAAACCGCGAAAGGACTA+AGG	0.463298	8_4:-50255422	Msa1330940:CDS
CAAGAGAAAGGGCAAGAGAA+AGG	0.468363	8_4:-50255071	Msa1330940:CDS
AGATTCTTCCACACTTTCAA+AGG	0.468610	8_4:+50254951	None:intergenic
TTTCAAAGGGGTTCCAAATG+AGG	0.468951	8_4:+50254965	None:intergenic
GATTTGGTGGCTGTCTTGAA+AGG	0.472274	8_4:+50255656	None:intergenic
GAAAGGAGGAAGAGGAAAGG+GGG	0.475237	8_4:+50255719	None:intergenic
GGGAATTGAAAGAAAGAGAA+AGG	0.476940	8_4:+50255702	None:intergenic
AAGAGTGCATTCAATTCTAT+AGG	0.477613	8_4:-50255105	Msa1330940:CDS
CCGATCCCTTAGTCCTTTCG+CGG	0.487376	8_4:+50255416	None:intergenic
AATCTTCTTCCTGCAGCTGC+TGG	0.488028	8_4:-50255516	Msa1330940:CDS
GATTCTTCCACACTTTCAAA+GGG	0.488241	8_4:+50254952	None:intergenic
TCAACAAACAGTTCCCTCAA+TGG	0.498770	8_4:-50255828	Msa1330940:CDS
AAGAAAGAGAAAGGAGGAAG+AGG	0.499947	8_4:+50255711	None:intergenic
CAACAGGTGGATGATGAAGT+TGG	0.500835	8_4:+50255607	None:intergenic
GTTTGATCTCAAGTTTGGAT+TGG	0.508056	8_4:+50255295	None:intergenic
TGAAAGGGATCAATATCATC+AGG	0.511469	8_4:+50255672	None:intergenic
GTTGTTGGAGGAAGATTTGG+TGG	0.511656	8_4:+50255643	None:intergenic
TGAACAATTTCACCAATCCA+TGG	0.514462	8_4:-50254631	Msa1330940:CDS
TCAAAGCAATACAATGAAGA+AGG	0.515193	8_4:-50255000	Msa1330940:CDS
GATGATAAGGGGTGCAAGTA+CGG	0.515892	8_4:+50254562	None:intergenic
ATGCTAGGTTATTTCCATTG+AGG	0.517513	8_4:+50255814	None:intergenic
TCACCACATAACATTCCAAA+AGG	0.520050	8_4:+50254467	None:intergenic
TACTGAAGGAGTTTCAAGCT+TGG	0.530351	8_4:-50255211	Msa1330940:CDS
TGAAGTTGAGTTGCTTTCAA+AGG	0.532484	8_4:+50255767	None:intergenic
TTGCCTTTACCAGCAGCTGC+AGG	0.547785	8_4:+50255507	None:intergenic
ATCAAGACATGTACTAGCTA+GGG	0.547923	8_4:-50255957	Msa1330940:five_prime_UTR
GAAAGTGTGGAAGAATCTGC+AGG	0.550929	8_4:-50254946	Msa1330940:CDS
TTGGAACCCCTTTGAAAGTG+TGG	0.551418	8_4:-50254959	Msa1330940:CDS
ATTTGGTGGCTGTCTTGAAA+GGG	0.555885	8_4:+50255657	None:intergenic
GTGATTTAGAGGAAAATGCT+AGG	0.566051	8_4:+50255799	None:intergenic
AGCAAGATCAAAACCGCGAA+AGG	0.567602	8_4:-50255429	Msa1330940:CDS
AACAGAAACAAACAAGAAAG+TGG	0.571531	8_4:+50254369	None:intergenic
AATCAACATCATGTTGTTGG+AGG	0.575800	8_4:+50255631	None:intergenic
CAAAACCGCGAAAGGACTAA+GGG	0.576240	8_4:-50255421	Msa1330940:CDS
TCAACTTCTGAATGTACTGA+AGG	0.578330	8_4:-50255225	Msa1330940:CDS
AATCAGCTTCACATGATCAA+AGG	0.583940	8_4:+50254888	None:intergenic
AAGCAAGCAAAACAGTGGAC+TGG	0.594986	8_4:-50255326	Msa1330940:CDS
GGTACACATCAGAGTACTCA+AGG	0.596783	8_4:-50254925	Msa1330940:CDS
CCGCGAAAGGACTAAGGGAT+CGG	0.598651	8_4:-50255416	Msa1330940:CDS
TTATTCATCATCACAACAGG+TGG	0.603901	8_4:+50255594	None:intergenic
TGTCACTTGAAGTTGCAAAG+AGG	0.614161	8_4:-50255383	Msa1330940:CDS
ACATAACATTCCAAAAGGAA+AGG	0.614793	8_4:+50254472	None:intergenic
AAGGGCAAGAGAAAGGACAA+AGG	0.615637	8_4:-50255064	Msa1330940:CDS
AATTGAAAGAAAGAGAAAGG+AGG	0.616668	8_4:+50255705	None:intergenic
AGCTTCACATGATCAAAGGA+AGG	0.617475	8_4:+50254892	None:intergenic
TGGTAAAGGCAAAACTGTAG+TGG	0.630471	8_4:-50255496	Msa1330940:CDS
AAGGAGGTGGTGATGATAAG+GGG	0.632930	8_4:+50254551	None:intergenic
GGTAGCATGTTAATTAGATG+CGG	0.636554	8_4:+50254583	None:intergenic
AGAGAATTGAACATCATAGG+TGG	0.646080	8_4:+50254772	None:intergenic
ATTCTTCCACACTTTCAAAG+GGG	0.682878	8_4:+50254953	None:intergenic
TCATGTGAAGCTGATTGATG+AGG	0.717288	8_4:-50254881	Msa1330940:CDS
ACAGTACTGATCATCATCAG+CGG	0.729484	8_4:-50255569	Msa1330940:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GATATATTTATAATACTGTT+TGG	-	chr8_4:50254392-50254411	Msa1330940:three_prime_UTR	15.0%
!!	GATATATTTATAATACTGTT+TGG	-	chr8_4:50254392-50254411	Msa1330940:three_prime_UTR	15.0%
!	CAATATCATCAGGATAATTA+GGG	+	chr8_4:50254615-50254634	None:intergenic	25.0%
!	TCAATATCATCAGGATAATT+AGG	+	chr8_4:50254616-50254635	None:intergenic	25.0%
!!!	ATAACAAGTTTTTGTTGTTG+TGG	+	chr8_4:50255135-50255154	None:intergenic	25.0%
!	GAGAAGAAATAGTACTAATA+AGG	-	chr8_4:50255158-50255177	Msa1330940:CDS	25.0%
!	GAATAAAAACTAACCTCATT+TGG	-	chr8_4:50255316-50255335	Msa1330940:CDS	25.0%
!!	AATTTGAACTTACTTGTTGA+AGG	+	chr8_4:50255554-50255573	None:intergenic	25.0%
!!!	TTATTTCTTTCCTTTCCTTT+TGG	-	chr8_4:50255812-50255831	Msa1330940:CDS	25.0%
!	CAATATCATCAGGATAATTA+GGG	+	chr8_4:50254615-50254634	None:intergenic	25.0%
!	TCAATATCATCAGGATAATT+AGG	+	chr8_4:50254616-50254635	None:intergenic	25.0%
!!!	ATAACAAGTTTTTGTTGTTG+TGG	+	chr8_4:50255135-50255154	None:intergenic	25.0%
!	GAGAAGAAATAGTACTAATA+AGG	-	chr8_4:50255158-50255177	Msa1330940:CDS	25.0%
!	GAATAAAAACTAACCTCATT+TGG	-	chr8_4:50255316-50255335	Msa1330940:CDS	25.0%
!!	AATTTGAACTTACTTGTTGA+AGG	+	chr8_4:50255554-50255573	None:intergenic	25.0%
!!!	TTATTTCTTTCCTTTCCTTT+TGG	-	chr8_4:50255812-50255831	Msa1330940:CDS	25.0%
!	CTGTTTGTTGAATACATATC+TGG	+	chr8_4:50254457-50254476	None:intergenic	30.0%
	TTGCTTTCAAAGGAACAAAA+AGG	+	chr8_4:50254520-50254539	None:intergenic	30.0%
	AATTGAAAGAAAGAGAAAGG+AGG	+	chr8_4:50254592-50254611	None:intergenic	30.0%
!	TTGTTATTCATCATCACAAC+AGG	+	chr8_4:50254706-50254725	None:intergenic	30.0%
!	TCTTGCTAGATCTTTTTCTT+TGG	+	chr8_4:50254834-50254853	None:intergenic	30.0%
!	TTTGGTCTTCAAGATATGTT+AGG	-	chr8_4:50254937-50254956	Msa1330940:CDS	30.0%
!	TAACATTTTTCTCTCTTGCA+AGG	+	chr8_4:50255026-50255045	None:intergenic	30.0%
!	AAGAGTGCATTCAATTCTAT+AGG	-	chr8_4:50255189-50255208	Msa1330940:CDS	30.0%
	TAGAGAAAAAGCAAGAGAAA+GGG	-	chr8_4:50255212-50255231	Msa1330940:CDS	30.0%
	AAGGACAAAGGAAAAAAAGA+AGG	-	chr8_4:50255242-50255261	Msa1330940:CDS	30.0%
	TCAAAGCAATACAATGAAGA+AGG	-	chr8_4:50255294-50255313	Msa1330940:CDS	30.0%
	CTTTGTTCATTATGAGCAAA+TGG	-	chr8_4:50255496-50255515	Msa1330940:CDS	30.0%
	TTGAGAGAATTGAACATCAT+AGG	+	chr8_4:50255528-50255547	None:intergenic	30.0%
	GCTTCATATATGTATATGCA+TGG	+	chr8_4:50255579-50255598	None:intergenic	30.0%
	ACCAATCCATGGAAAAAAAT+TGG	-	chr8_4:50255674-50255693	Msa1330940:CDS	30.0%
	CCAATCCATGGAAAAAAATT+GGG	-	chr8_4:50255675-50255694	Msa1330940:CDS	30.0%
	ACATAACATTCCAAAAGGAA+AGG	+	chr8_4:50255825-50255844	None:intergenic	30.0%
!!!	TTTCCTTTTGGAATGTTATG+TGG	-	chr8_4:50255824-50255843	Msa1330940:CDS	30.0%
	AACAGAAACAAACAAGAAAG+TGG	+	chr8_4:50255928-50255947	None:intergenic	30.0%
	GTAAACTTGTACCAATTTCA+AGG	+	chr8_4:50255956-50255975	None:intergenic	30.0%
!	CTGTTTGTTGAATACATATC+TGG	+	chr8_4:50254457-50254476	None:intergenic	30.0%
	TTGCTTTCAAAGGAACAAAA+AGG	+	chr8_4:50254520-50254539	None:intergenic	30.0%
	AATTGAAAGAAAGAGAAAGG+AGG	+	chr8_4:50254592-50254611	None:intergenic	30.0%
!	TTGTTATTCATCATCACAAC+AGG	+	chr8_4:50254706-50254725	None:intergenic	30.0%
!	TCTTGCTAGATCTTTTTCTT+TGG	+	chr8_4:50254834-50254853	None:intergenic	30.0%
!	TTTGGTCTTCAAGATATGTT+AGG	-	chr8_4:50254937-50254956	Msa1330940:CDS	30.0%
!	TAACATTTTTCTCTCTTGCA+AGG	+	chr8_4:50255026-50255045	None:intergenic	30.0%
!	AAGAGTGCATTCAATTCTAT+AGG	-	chr8_4:50255189-50255208	Msa1330940:CDS	30.0%
	TAGAGAAAAAGCAAGAGAAA+GGG	-	chr8_4:50255212-50255231	Msa1330940:CDS	30.0%
	AAGGACAAAGGAAAAAAAGA+AGG	-	chr8_4:50255242-50255261	Msa1330940:CDS	30.0%
	TCAAAGCAATACAATGAAGA+AGG	-	chr8_4:50255294-50255313	Msa1330940:CDS	30.0%
	CTTTGTTCATTATGAGCAAA+TGG	-	chr8_4:50255496-50255515	Msa1330940:CDS	30.0%
	TTGAGAGAATTGAACATCAT+AGG	+	chr8_4:50255528-50255547	None:intergenic	30.0%
	GCTTCATATATGTATATGCA+TGG	+	chr8_4:50255579-50255598	None:intergenic	30.0%
	ACCAATCCATGGAAAAAAAT+TGG	-	chr8_4:50255674-50255693	Msa1330940:CDS	30.0%
	CCAATCCATGGAAAAAAATT+GGG	-	chr8_4:50255675-50255694	Msa1330940:CDS	30.0%
	ACATAACATTCCAAAAGGAA+AGG	+	chr8_4:50255825-50255844	None:intergenic	30.0%
!!!	TTTCCTTTTGGAATGTTATG+TGG	-	chr8_4:50255824-50255843	Msa1330940:CDS	30.0%
	AACAGAAACAAACAAGAAAG+TGG	+	chr8_4:50255928-50255947	None:intergenic	30.0%
	GTAAACTTGTACCAATTTCA+AGG	+	chr8_4:50255956-50255975	None:intergenic	30.0%
	ATCAAGACATGTACTAGCTA+GGG	-	chr8_4:50254337-50254356	Msa1330940:three_prime_UTR	35.0%
!	TGCTAGGTTATTTCCATTGA+GGG	+	chr8_4:50254482-50254501	None:intergenic	35.0%
!	ATGCTAGGTTATTTCCATTG+AGG	+	chr8_4:50254483-50254502	None:intergenic	35.0%
	GTGATTTAGAGGAAAATGCT+AGG	+	chr8_4:50254498-50254517	None:intergenic	35.0%
	GGAACAAAAAGGTGATTTAG+AGG	+	chr8_4:50254509-50254528	None:intergenic	35.0%
!	TGAAGTTGAGTTGCTTTCAA+AGG	+	chr8_4:50254530-50254549	None:intergenic	35.0%
	GGGAATTGAAAGAAAGAGAA+AGG	+	chr8_4:50254595-50254614	None:intergenic	35.0%
	TGAAAGGGATCAATATCATC+AGG	+	chr8_4:50254625-50254644	None:intergenic	35.0%
	AATCAACATCATGTTGTTGG+AGG	+	chr8_4:50254666-50254685	None:intergenic	35.0%
	GGAAATCAACATCATGTTGT+TGG	+	chr8_4:50254669-50254688	None:intergenic	35.0%
	TTATTCATCATCACAACAGG+TGG	+	chr8_4:50254703-50254722	None:intergenic	35.0%
	GCTTTGATTGTTGAGTTTGA+AGG	+	chr8_4:50254751-50254770	None:intergenic	35.0%
!!!	GAAGTTGCAAAGAGGTTTTT+TGG	-	chr8_4:50254919-50254938	Msa1330940:CDS	35.0%
	TGAAAAAGCAAGCAAAACAG+TGG	-	chr8_4:50254963-50254982	Msa1330940:CDS	35.0%
	GTTTGATCTCAAGTTTGGAT+TGG	+	chr8_4:50255002-50255021	None:intergenic	35.0%
!	AAGGTGTTTGATCTCAAGTT+TGG	+	chr8_4:50255007-50255026	None:intergenic	35.0%
	TCAACTTCTGAATGTACTGA+AGG	-	chr8_4:50255069-50255088	Msa1330940:CDS	35.0%
	TCAAGCTTGGATAATGAAGT+TGG	-	chr8_4:50255096-50255115	Msa1330940:CDS	35.0%
	GTAGAGAAAAAGCAAGAGAA+AGG	-	chr8_4:50255211-50255230	Msa1330940:CDS	35.0%
	ATTCTTCCACACTTTCAAAG+GGG	+	chr8_4:50255344-50255363	None:intergenic	35.0%
	GATTCTTCCACACTTTCAAA+GGG	+	chr8_4:50255345-50255364	None:intergenic	35.0%
	AGATTCTTCCACACTTTCAA+AGG	+	chr8_4:50255346-50255365	None:intergenic	35.0%
	AATCAGCTTCACATGATCAA+AGG	+	chr8_4:50255409-50255428	None:intergenic	35.0%
	AAGCTACTCTCAAAAAGCTA+AGG	-	chr8_4:50255449-50255468	Msa1330940:CDS	35.0%
	AGAGAATTGAACATCATAGG+TGG	+	chr8_4:50255525-50255544	None:intergenic	35.0%
	TGAACAATTTCACCAATCCA+TGG	-	chr8_4:50255663-50255682	Msa1330940:CDS	35.0%
!!!	CCCAATTTTTTTCCATGGAT+TGG	+	chr8_4:50255678-50255697	None:intergenic	35.0%
	ATCCATGGAAAAAAATTGGG+AGG	-	chr8_4:50255678-50255697	Msa1330940:CDS	35.0%
	GGTAGCATGTTAATTAGATG+CGG	+	chr8_4:50255714-50255733	None:intergenic	35.0%
	TCACCACATAACATTCCAAA+AGG	+	chr8_4:50255830-50255849	None:intergenic	35.0%
!!!	TTTTGGAATGTTATGTGGTG+AGG	-	chr8_4:50255829-50255848	Msa1330940:CDS	35.0%
!	GTGAGGTATCTTCAGAATTT+CGG	-	chr8_4:50255846-50255865	Msa1330940:exon	35.0%
	ATCAAGACATGTACTAGCTA+GGG	-	chr8_4:50254337-50254356	Msa1330940:three_prime_UTR	35.0%
!	TGCTAGGTTATTTCCATTGA+GGG	+	chr8_4:50254482-50254501	None:intergenic	35.0%
!	ATGCTAGGTTATTTCCATTG+AGG	+	chr8_4:50254483-50254502	None:intergenic	35.0%
	GTGATTTAGAGGAAAATGCT+AGG	+	chr8_4:50254498-50254517	None:intergenic	35.0%
	GGAACAAAAAGGTGATTTAG+AGG	+	chr8_4:50254509-50254528	None:intergenic	35.0%
!	TGAAGTTGAGTTGCTTTCAA+AGG	+	chr8_4:50254530-50254549	None:intergenic	35.0%
	GGGAATTGAAAGAAAGAGAA+AGG	+	chr8_4:50254595-50254614	None:intergenic	35.0%
	TGAAAGGGATCAATATCATC+AGG	+	chr8_4:50254625-50254644	None:intergenic	35.0%
	AATCAACATCATGTTGTTGG+AGG	+	chr8_4:50254666-50254685	None:intergenic	35.0%
	GGAAATCAACATCATGTTGT+TGG	+	chr8_4:50254669-50254688	None:intergenic	35.0%
	TTATTCATCATCACAACAGG+TGG	+	chr8_4:50254703-50254722	None:intergenic	35.0%
	GCTTTGATTGTTGAGTTTGA+AGG	+	chr8_4:50254751-50254770	None:intergenic	35.0%
!!!	GAAGTTGCAAAGAGGTTTTT+TGG	-	chr8_4:50254919-50254938	Msa1330940:CDS	35.0%
	TGAAAAAGCAAGCAAAACAG+TGG	-	chr8_4:50254963-50254982	Msa1330940:CDS	35.0%
	GTTTGATCTCAAGTTTGGAT+TGG	+	chr8_4:50255002-50255021	None:intergenic	35.0%
!	AAGGTGTTTGATCTCAAGTT+TGG	+	chr8_4:50255007-50255026	None:intergenic	35.0%
	TCAACTTCTGAATGTACTGA+AGG	-	chr8_4:50255069-50255088	Msa1330940:CDS	35.0%
	TCAAGCTTGGATAATGAAGT+TGG	-	chr8_4:50255096-50255115	Msa1330940:CDS	35.0%
	GTAGAGAAAAAGCAAGAGAA+AGG	-	chr8_4:50255211-50255230	Msa1330940:CDS	35.0%
	ATTCTTCCACACTTTCAAAG+GGG	+	chr8_4:50255344-50255363	None:intergenic	35.0%
	GATTCTTCCACACTTTCAAA+GGG	+	chr8_4:50255345-50255364	None:intergenic	35.0%
	AGATTCTTCCACACTTTCAA+AGG	+	chr8_4:50255346-50255365	None:intergenic	35.0%
	AATCAGCTTCACATGATCAA+AGG	+	chr8_4:50255409-50255428	None:intergenic	35.0%
	AAGCTACTCTCAAAAAGCTA+AGG	-	chr8_4:50255449-50255468	Msa1330940:CDS	35.0%
	AGAGAATTGAACATCATAGG+TGG	+	chr8_4:50255525-50255544	None:intergenic	35.0%
	TGAACAATTTCACCAATCCA+TGG	-	chr8_4:50255663-50255682	Msa1330940:CDS	35.0%
!!!	CCCAATTTTTTTCCATGGAT+TGG	+	chr8_4:50255678-50255697	None:intergenic	35.0%
	ATCCATGGAAAAAAATTGGG+AGG	-	chr8_4:50255678-50255697	Msa1330940:CDS	35.0%
	GGTAGCATGTTAATTAGATG+CGG	+	chr8_4:50255714-50255733	None:intergenic	35.0%
	TCACCACATAACATTCCAAA+AGG	+	chr8_4:50255830-50255849	None:intergenic	35.0%
!!!	TTTTGGAATGTTATGTGGTG+AGG	-	chr8_4:50255829-50255848	Msa1330940:CDS	35.0%
!	GTGAGGTATCTTCAGAATTT+CGG	-	chr8_4:50255846-50255865	Msa1330940:exon	35.0%
	CATCAAGACATGTACTAGCT+AGG	-	chr8_4:50254336-50254355	Msa1330940:three_prime_UTR	40.0%
	TCAACAAACAGTTCCCTCAA+TGG	-	chr8_4:50254466-50254485	Msa1330940:three_prime_UTR	40.0%
	AAGAAAGAGAAAGGAGGAAG+AGG	+	chr8_4:50254586-50254605	None:intergenic	40.0%
!	ATTTGGTGGCTGTCTTGAAA+GGG	+	chr8_4:50254640-50254659	None:intergenic	40.0%
	CATGTTGTTGGAGGAAGATT+TGG	+	chr8_4:50254657-50254676	None:intergenic	40.0%
!!	ACAGTACTGATCATCATCAG+CGG	-	chr8_4:50254725-50254744	Msa1330940:intron	40.0%
	TGGTAAAGGCAAAACTGTAG+TGG	-	chr8_4:50254798-50254817	Msa1330940:CDS	40.0%
!	TGTCACTTGAAGTTGCAAAG+AGG	-	chr8_4:50254911-50254930	Msa1330940:CDS	40.0%
	GTTGAAGATGCACTCTTAGT+AGG	+	chr8_4:50255054-50255073	None:intergenic	40.0%
	TACTGAAGGAGTTTCAAGCT+TGG	-	chr8_4:50255083-50255102	Msa1330940:CDS	40.0%
	TTTCAAAGGGGTTCCAAATG+AGG	+	chr8_4:50255332-50255351	None:intergenic	40.0%
	AGCTTCACATGATCAAAGGA+AGG	+	chr8_4:50255405-50255424	None:intergenic	40.0%
	TCATGTGAAGCTGATTGATG+AGG	-	chr8_4:50255413-50255432	Msa1330940:CDS	40.0%
!!!	TGCCTCCCAATTTTTTTCCA+TGG	+	chr8_4:50255683-50255702	None:intergenic	40.0%
!	AAAGGAGGTGGTGATGATAA+GGG	+	chr8_4:50255747-50255766	None:intergenic	40.0%
!	AAAAGGAGGTGGTGATGATA+AGG	+	chr8_4:50255748-50255767	None:intergenic	40.0%
	TCTGTTCCAGACCTTGAAAT+TGG	-	chr8_4:50255942-50255961	Msa1330940:five_prime_UTR	40.0%
	CTTGTACCAATTTCAAGGTC+TGG	+	chr8_4:50255951-50255970	None:intergenic	40.0%
	CATCAAGACATGTACTAGCT+AGG	-	chr8_4:50254336-50254355	Msa1330940:three_prime_UTR	40.0%
	TCAACAAACAGTTCCCTCAA+TGG	-	chr8_4:50254466-50254485	Msa1330940:three_prime_UTR	40.0%
	AAGAAAGAGAAAGGAGGAAG+AGG	+	chr8_4:50254586-50254605	None:intergenic	40.0%
!	ATTTGGTGGCTGTCTTGAAA+GGG	+	chr8_4:50254640-50254659	None:intergenic	40.0%
	CATGTTGTTGGAGGAAGATT+TGG	+	chr8_4:50254657-50254676	None:intergenic	40.0%
!!	ACAGTACTGATCATCATCAG+CGG	-	chr8_4:50254725-50254744	Msa1330940:intron	40.0%
	TGGTAAAGGCAAAACTGTAG+TGG	-	chr8_4:50254798-50254817	Msa1330940:CDS	40.0%
!	TGTCACTTGAAGTTGCAAAG+AGG	-	chr8_4:50254911-50254930	Msa1330940:CDS	40.0%
	GTTGAAGATGCACTCTTAGT+AGG	+	chr8_4:50255054-50255073	None:intergenic	40.0%
	TACTGAAGGAGTTTCAAGCT+TGG	-	chr8_4:50255083-50255102	Msa1330940:CDS	40.0%
	TTTCAAAGGGGTTCCAAATG+AGG	+	chr8_4:50255332-50255351	None:intergenic	40.0%
	AGCTTCACATGATCAAAGGA+AGG	+	chr8_4:50255405-50255424	None:intergenic	40.0%
	TCATGTGAAGCTGATTGATG+AGG	-	chr8_4:50255413-50255432	Msa1330940:CDS	40.0%
!!!	TGCCTCCCAATTTTTTTCCA+TGG	+	chr8_4:50255683-50255702	None:intergenic	40.0%
!	AAAGGAGGTGGTGATGATAA+GGG	+	chr8_4:50255747-50255766	None:intergenic	40.0%
!	AAAAGGAGGTGGTGATGATA+AGG	+	chr8_4:50255748-50255767	None:intergenic	40.0%
	TCTGTTCCAGACCTTGAAAT+TGG	-	chr8_4:50255942-50255961	Msa1330940:five_prime_UTR	40.0%
	CTTGTACCAATTTCAAGGTC+TGG	+	chr8_4:50255951-50255970	None:intergenic	40.0%
	AGAAAGGAGGAAGAGGAAAG+GGG	+	chr8_4:50254579-50254598	None:intergenic	45.0%
	GAGAAAGGAGGAAGAGGAAA+GGG	+	chr8_4:50254580-50254599	None:intergenic	45.0%
	AGAGAAAGGAGGAAGAGGAA+AGG	+	chr8_4:50254581-50254600	None:intergenic	45.0%
!!	GATTTGGTGGCTGTCTTGAA+AGG	+	chr8_4:50254641-50254660	None:intergenic	45.0%
	GTTGTTGGAGGAAGATTTGG+TGG	+	chr8_4:50254654-50254673	None:intergenic	45.0%
	CAACAGGTGGATGATGAAGT+TGG	+	chr8_4:50254690-50254709	None:intergenic	45.0%
!!	CGGTTTTGATCTTGCTGTGT+CGG	+	chr8_4:50254861-50254880	None:intergenic	45.0%
	AGCAAGATCAAAACCGCGAA+AGG	-	chr8_4:50254865-50254884	Msa1330940:CDS	45.0%
	TCAAAACCGCGAAAGGACTA+AGG	-	chr8_4:50254872-50254891	Msa1330940:CDS	45.0%
	CAAAACCGCGAAAGGACTAA+GGG	-	chr8_4:50254873-50254892	Msa1330940:CDS	45.0%
	AAGCAAGCAAAACAGTGGAC+TGG	-	chr8_4:50254968-50254987	Msa1330940:CDS	45.0%
	CAAGAGAAAGGGCAAGAGAA+AGG	-	chr8_4:50255223-50255242	Msa1330940:CDS	45.0%
	AAGGGCAAGAGAAAGGACAA+AGG	-	chr8_4:50255230-50255249	Msa1330940:CDS	45.0%
!	TTGGAACCCCTTTGAAAGTG+TGG	-	chr8_4:50255335-50255354	Msa1330940:CDS	45.0%
!	GAAAGTGTGGAAGAATCTGC+AGG	-	chr8_4:50255348-50255367	Msa1330940:CDS	45.0%
!	GGTACACATCAGAGTACTCA+AGG	-	chr8_4:50255369-50255388	Msa1330940:CDS	45.0%
!	GATGATAAGGGGTGCAAGTA+CGG	+	chr8_4:50255735-50255754	None:intergenic	45.0%
!	AAGGAGGTGGTGATGATAAG+GGG	+	chr8_4:50255746-50255765	None:intergenic	45.0%
	TGACTGACACAAAAAGGAGG+TGG	+	chr8_4:50255759-50255778	None:intergenic	45.0%
!	ACCTCCTTTTTGTGTCAGTC+AGG	-	chr8_4:50255758-50255777	Msa1330940:CDS	45.0%
	TGAGCCTGACTGACACAAAA+AGG	+	chr8_4:50255765-50255784	None:intergenic	45.0%
	AGAAAGGAGGAAGAGGAAAG+GGG	+	chr8_4:50254579-50254598	None:intergenic	45.0%
	GAGAAAGGAGGAAGAGGAAA+GGG	+	chr8_4:50254580-50254599	None:intergenic	45.0%
	AGAGAAAGGAGGAAGAGGAA+AGG	+	chr8_4:50254581-50254600	None:intergenic	45.0%
!!	GATTTGGTGGCTGTCTTGAA+AGG	+	chr8_4:50254641-50254660	None:intergenic	45.0%
	GTTGTTGGAGGAAGATTTGG+TGG	+	chr8_4:50254654-50254673	None:intergenic	45.0%
	CAACAGGTGGATGATGAAGT+TGG	+	chr8_4:50254690-50254709	None:intergenic	45.0%
!!	CGGTTTTGATCTTGCTGTGT+CGG	+	chr8_4:50254861-50254880	None:intergenic	45.0%
	AGCAAGATCAAAACCGCGAA+AGG	-	chr8_4:50254865-50254884	Msa1330940:CDS	45.0%
	TCAAAACCGCGAAAGGACTA+AGG	-	chr8_4:50254872-50254891	Msa1330940:CDS	45.0%
	CAAAACCGCGAAAGGACTAA+GGG	-	chr8_4:50254873-50254892	Msa1330940:CDS	45.0%
	AAGCAAGCAAAACAGTGGAC+TGG	-	chr8_4:50254968-50254987	Msa1330940:CDS	45.0%
	CAAGAGAAAGGGCAAGAGAA+AGG	-	chr8_4:50255223-50255242	Msa1330940:CDS	45.0%
	AAGGGCAAGAGAAAGGACAA+AGG	-	chr8_4:50255230-50255249	Msa1330940:CDS	45.0%
!	TTGGAACCCCTTTGAAAGTG+TGG	-	chr8_4:50255335-50255354	Msa1330940:CDS	45.0%
!	GAAAGTGTGGAAGAATCTGC+AGG	-	chr8_4:50255348-50255367	Msa1330940:CDS	45.0%
!	GGTACACATCAGAGTACTCA+AGG	-	chr8_4:50255369-50255388	Msa1330940:CDS	45.0%
!	GATGATAAGGGGTGCAAGTA+CGG	+	chr8_4:50255735-50255754	None:intergenic	45.0%
!	AAGGAGGTGGTGATGATAAG+GGG	+	chr8_4:50255746-50255765	None:intergenic	45.0%
	TGACTGACACAAAAAGGAGG+TGG	+	chr8_4:50255759-50255778	None:intergenic	45.0%
!	ACCTCCTTTTTGTGTCAGTC+AGG	-	chr8_4:50255758-50255777	Msa1330940:CDS	45.0%
	TGAGCCTGACTGACACAAAA+AGG	+	chr8_4:50255765-50255784	None:intergenic	45.0%
	GAAAGGAGGAAGAGGAAAGG+GGG	+	chr8_4:50254578-50254597	None:intergenic	50.0%
	AATCTTCTTCCTGCAGCTGC+TGG	-	chr8_4:50254778-50254797	Msa1330940:CDS	50.0%
	GCCTGACTGACACAAAAAGG+AGG	+	chr8_4:50255762-50255781	None:intergenic	50.0%
	GAAAGGAGGAAGAGGAAAGG+GGG	+	chr8_4:50254578-50254597	None:intergenic	50.0%
	AATCTTCTTCCTGCAGCTGC+TGG	-	chr8_4:50254778-50254797	Msa1330940:CDS	50.0%
	GCCTGACTGACACAAAAAGG+AGG	+	chr8_4:50255762-50255781	None:intergenic	50.0%
	CTTCCTGCAGCTGCTGGTAA+AGG	-	chr8_4:50254784-50254803	Msa1330940:CDS	55.0%
	TTGCCTTTACCAGCAGCTGC+AGG	+	chr8_4:50254790-50254809	None:intergenic	55.0%
	CCGATCCCTTAGTCCTTTCG+CGG	+	chr8_4:50254881-50254900	None:intergenic	55.0%
	CCGCGAAAGGACTAAGGGAT+CGG	-	chr8_4:50254878-50254897	Msa1330940:CDS	55.0%
	CTTCCTGCAGCTGCTGGTAA+AGG	-	chr8_4:50254784-50254803	Msa1330940:CDS	55.0%
	TTGCCTTTACCAGCAGCTGC+AGG	+	chr8_4:50254790-50254809	None:intergenic	55.0%
	CCGATCCCTTAGTCCTTTCG+CGG	+	chr8_4:50254881-50254900	None:intergenic	55.0%
	CCGCGAAAGGACTAAGGGAT+CGG	-	chr8_4:50254878-50254897	Msa1330940:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	50254321	50255995	50254321	ID=Msa1330940;Name=Msa1330940
chr8_4	mRNA	50254321	50255995	50254321	ID=Msa1330940-mRNA-1;Parent=Msa1330940;Name=Msa1330940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=139\|1\|1\|1\|0\|0\|2\|275\|388
chr8_4	exon	50254321	50254661	50254321	ID=Msa1330940-mRNA-1:exon:14657;Parent=Msa1330940-mRNA-1
chr8_4	exon	50254756	50255995	50254756	ID=Msa1330940-mRNA-1:exon:14656;Parent=Msa1330940-mRNA-1
chr8_4	five_prime_UTR	50255857	50255995	50255857	ID=Msa1330940-mRNA-1:five_prime_utr;Parent=Msa1330940-mRNA-1
chr8_4	CDS	50254756	50255856	50254756	ID=Msa1330940-mRNA-1:cds;Parent=Msa1330940-mRNA-1
chr8_4	CDS	50254596	50254661	50254596	ID=Msa1330940-mRNA-1:cds;Parent=Msa1330940-mRNA-1
chr8_4	three_prime_UTR	50254321	50254595	50254321	ID=Msa1330940-mRNA-1:three_prime_utr;Parent=Msa1330940-mRNA-1

Gene Sequence

>Msa1330940

ATGTATTCAACAAACAGTTCCCTCAATGGAAATAACCTAGCATTTTCCTCTAAATCACCTTTTTGTTCCTTTGAAAGCAACTCAACTTCATCAACAGATATTGAAAACAGTCATTCCCCCTTTCCTCTTCCTCCTTTCTCTTTCTTTCAATTCCCTAATTATCCTGATGATATTGATCCCTTTCAAGACAGCCACCAAATCTTCCTCCAACAACATGATGTTGATTTCCAACTTCATCATCCACCTGTTGTGATGATGAATAACAACAGTACTGATCATCATCAGCGGCCTTCAAACTCAACAATCAAAGCTAACAACAATCTTCTTCCTGCAGCTGCTGGTAAAGGCAAAACTGTAGTGGATCAGCAGATCCAAAGAAAAAGATCTAGCAAGAGAGACCGACACAGCAAGATCAAAACCGCGAAAGGACTAAGGGATCGGAGAATGAGATTGTCACTTGAAGTTGCAAAGAGGTTTTTTGGTCTTCAAGATATGTTAGGCTTTGAAAAAGCAAGCAAAACAGTGGACTGGTTGCTCAACCAATCCAAACTTGAGATCAAACACCTTGCAAGAGAGAAAAATGTTAATTTTCCTACTAAGAGTGCATCTTCAACTTCTGAATGTACTGAAGGAGTTTCAAGCTTGGATAATGAAGTTGGAAATCAAGAAGAACCACAACAACAAAAACTTGTTATGAAGAGAAGAAATAGTACTAATAAGGTTTGTAGAAAGAGTGCATTCAATTCTATAGGTAGAGAAAAAGCAAGAGAAAGGGCAAGAGAAAGGACAAAGGAAAAAAAGAAGGCTAGAACATCACTAGTTGATGAATCAAATTCAAAGCAATACAATGAAGAAGGAATAAAAACTAACCTCATTTGGAACCCCTTTGAAAGTGTGGAAGAATCTGCAGGTACACATCAGAGTACTCAAGGTGTGAATCATCCTTCCTTTGATCATGTGAAGCTGATTGATGAGGCTGAAGTAGAAACAAGCTACTCTCAAAAAGCTAAGGAACAACATTCAGATGAAGATAATTCTTTGTTCATTATGAGCAAATGGAGTCCACCTATGATGTTCAATTCTCTCAATAACCTTCAACAACATCAATTTGAACAATTTCACCAATCCATGGAAAAAAATTGGGAGGCATACAACAACCGCATCTAA

Protein sequence

>Msa1330940

MYSTNSSLNGNNLAFSSKSPFCSFESNSTSSTDIENSHSPFPLPPFSFFQFPNYPDDIDPFQDSHQIFLQQHDVDFQLHHPPVVMMNNNSTDHHQRPSNSTIKANNNLLPAAAGKGKTVVDQQIQRKRSSKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVDWLLNQSKLEIKHLAREKNVNFPTKSASSTSECTEGVSSLDNEVGNQEEPQQQKLVMKRRNSTNKVCRKSAFNSIGREKARERARERTKEKKKARTSLVDESNSKQYNEEGIKTNLIWNPFESVEESAGTHQSTQGVNHPSFDHVKLIDEAEVETSYSQKAKEQHSDEDNSLFIMSKWSPPMMFNSLNNLQQHQFEQFHQSMEKNWEAYNNRI*