AlfalfaGEDB | Msa1214510

M. sativa cultivar zhongmu-4 / Msa1214510

KEGG: -
GO: GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905393 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141
PFAM: PF03634.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1214510	XP_013458053.1	97.179	390	7	4	1	388	1	388	0.0	766

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1214510	sp\|Q8LN68\|TB1_ORYSJ	42.038	157	74	2	131	270	115	271	1.96e-26	112

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1214510	TF	TCP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1214510	Msa1260950	0.807296	5.418727e-50	-8.615850e-47
Msa1214510	Msa1330940	0.871724	5.495485e-67	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1214510	MtrunA17_Chr4g0062691	97.179	390	7	4	1	388	1	388	0.0	766
Msa1214510	MtrunA17_Chr6g0456881	41.176	170	85	3	110	266	105	272	1.48e-28	115
Msa1214510	MtrunA17_Chr7g0220931	66.129	62	21	0	133	194	122	183	3.52e-21	94.0
Msa1214510	MtrunA17_Chr1g0205131	55.696	79	33	1	119	195	95	173	1.30e-19	89.7
Msa1214510	MtrunA17_Chr8g0376571	35.329	167	83	6	127	268	57	223	2.75e-17	83.6
Msa1214510	MtrunA17_Chr8g0360441	45.918	98	51	2	109	205	31	127	4.52e-17	82.4
Msa1214510	MtrunA17_Chr7g0219461	32.035	231	129	9	132	358	58	264	8.56e-17	80.9
Msa1214510	MtrunA17_Chr2g0316391	48.718	78	39	1	113	190	3	79	3.34e-15	75.5
Msa1214510	MtrunA17_Chr6g0454781	58.621	58	24	0	132	189	50	107	4.90e-15	75.5
Msa1214510	MtrunA17_Chr4g0040921	50.000	64	32	0	127	190	18	81	7.64e-15	75.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1214510	AT3G18550.1	32.131	305	157	11	1	263	5	301	3.83e-25	106
Msa1214510	AT3G18550.4	32.131	305	157	11	1	263	5	301	3.83e-25	106
Msa1214510	AT3G18550.3	32.131	305	157	11	1	263	5	301	4.51e-25	106
Msa1214510	AT3G18550.2	36.538	208	109	5	1	190	5	207	8.00e-25	105
Msa1214510	AT1G67260.2	51.546	97	39	1	108	196	56	152	1.23e-23	101
Msa1214510	AT1G67260.3	51.546	97	39	1	108	196	56	152	1.23e-23	101
Msa1214510	AT1G67260.1	51.546	97	39	1	108	196	56	152	1.38e-23	101
Msa1214510	AT1G68800.2	65.217	69	23	1	122	189	102	170	2.24e-22	97.8
Msa1214510	AT1G68800.1	65.217	69	23	1	122	189	102	170	2.34e-22	97.4
Msa1214510	AT4G18390.1	35.519	183	78	6	127	293	38	196	1.15e-19	90.1

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Find 83 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGGTGGTGATGATA+AGG	0.428540	8_1:+75177937	None:intergenic
AAAGGAGGTGGTGATGATAA+GGG	0.399159	8_1:+75177938	None:intergenic
AACAGAAACAAACAAGAAAG+GGG	0.594346	8_1:+75177757	None:intergenic
AAGAAAGAGAAAGGAGGAAG+AGG	0.499947	8_1:+75179099	None:intergenic
AAGAGTGCATTCAATTCTAT+AGG	0.477613	8_1:-75178493	Msa1214510:CDS
AAGCAAGCAAAACAGTGGAC+TGG	0.594986	8_1:-75178714	Msa1214510:CDS
AAGGAGGTGGTGATGATAAG+GGG	0.632930	8_1:+75177939	None:intergenic
AAGGGCAAGAGAAAGGACAA+AGG	0.615637	8_1:-75178452	Msa1214510:CDS
AAGGTGTTTGATCTCAAGTT+TGG	0.394081	8_1:+75178678	None:intergenic
AATCAACATCATGTTGTTGG+AGG	0.575800	8_1:+75179019	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGCTTTCAAAGGAACAAAA+AGG	+	chr8_1:75177908-75177927	None:intergenic	30.0%
AATTGAAAGAAAGAGAAAGG+AGG	+	chr8_1:75177980-75177999	None:intergenic	30.0%
TAGAGAAAAAGCAAGAGAAA+GGG	-	chr8_1:75178600-75178619	Msa1214510:CDS	30.0%
AAGGACAAAGGAAAAAAAGA+AGG	-	chr8_1:75178630-75178649	Msa1214510:CDS	30.0%
TCAAAGCAATACAATGAAGA+AGG	-	chr8_1:75178682-75178701	Msa1214510:CDS	30.0%
CTTTGTTCATTATGAGCAAA+TGG	-	chr8_1:75178884-75178903	Msa1214510:CDS	30.0%
TTGAGAGAATTGAACATCAT+AGG	+	chr8_1:75178916-75178935	None:intergenic	30.0%
GCTTCATATATGTATATGCA+TGG	+	chr8_1:75178967-75178986	None:intergenic	30.0%
ACATAACATTCCAAAAGGAA+AGG	+	chr8_1:75179213-75179232	None:intergenic	30.0%
AACAGAAACAAACAAGAAAG+GGG	+	chr8_1:75179316-75179335	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	75177709	75179383	75177709	ID=Msa1214510;Name=Msa1214510
chr8_1	mRNA	75177709	75179383	75177709	ID=Msa1214510-mRNA-1;Parent=Msa1214510;Name=Msa1214510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=139\|1\|1\|1\|0\|0.5\|2\|275\|388
chr8_1	exon	75177709	75178049	75177709	ID=Msa1214510-mRNA-1:exon:25811;Parent=Msa1214510-mRNA-1
chr8_1	exon	75178144	75179383	75178144	ID=Msa1214510-mRNA-1:exon:25810;Parent=Msa1214510-mRNA-1
chr8_1	five_prime_UTR	75179245	75179383	75179245	ID=Msa1214510-mRNA-1:five_prime_utr;Parent=Msa1214510-mRNA-1
chr8_1	CDS	75178144	75179244	75178144	ID=Msa1214510-mRNA-1:cds;Parent=Msa1214510-mRNA-1
chr8_1	CDS	75177984	75178049	75177984	ID=Msa1214510-mRNA-1:cds;Parent=Msa1214510-mRNA-1
chr8_1	three_prime_UTR	75177709	75177983	75177709	ID=Msa1214510-mRNA-1:three_prime_utr;Parent=Msa1214510-mRNA-1

Gene Sequence

>Msa1214510

ATGTATTCAACAAACAGTTCCCTCAATGGAAATAACCTAGCATTTTCCTCTAAATCACCTTTTTGTTCCTTTGAAAGCAACTCAACTTCATCAACAGATATTGAAAACAGTCATTCCCCCTTTCCTCTTCCTCCTTTCTCTTTCTTTCAATTCCCTAATTATCCTGATGATATTGATCCCTTTCAAGACAGCCACCAAATCTTCCTCCAACAACATGATGTTGATTTCCAACTTCATCATCCACCTGTTGTGATGATGAATAACAACAGTACTGATCATCATCAGCGGCCTTCAAACTCAACAATCAAAGCTAACAACAATCTTCTTCCTGCAGCTGCTGGTAAAGGCAAAACTGTAGTGGATCAGCAGATCCAAAGAAAAAGATCTAGCAAGAGAGACCGACACAGCAAGATCAAAACCGCGAAAGGACTAAGGGATCGGAGAATGAGATTGTCACTTGAAGTTGCAAAGAGGTTTTTTGGTCTTCAAGATATGTTAGGCTTTGAAAAAGCAAGCAAAACAGTGGACTGGTTGCTCAACCAATCCAAACTTGAGATCAAACACCTTGCAAGAGAGAAAAATGTTAATTTTCCTACTAAAAGTGCATCTTCAACTTCTGAATGTACTGAAGGAGTTTCAAGCTTGGATAATGAAGTTGGAAATCAAGAAGAACCACAACAACAAAAACTTGTTATGAAGAGAAGAAATAGTACTAATAAGGTTTGTAGAAAGAGTGCATTCAATTCTATAGGTAGAGAAAAAGCAAGAGAAAGGGCAAGAGAAAGGACAAAGGAAAAAAAGAAGGCTAGAACATCACTAGTTGATGAATCAAATTCAAAGCAATACAATGAAGAAGGAATAAAAACTAACCTCATTTGGAACCCCTTTGAAAGTGTGGAAGAATCTGCAGGTACACATCAGAGTACTCAAGATGTGAATCATCCTTCCTTTGATCATGTGAAGCTGATTGATGAGGCTGAAGTAGAAACAAGCTACTCTCAAAAAGCTAAGGAACAACATTCAGATGAAGATAATTCTTTGTTCATTATGAGCAAATGGAGTCCACCTATGATGTTCAATTCTCTCAATAACCTTCAACAACATCAATTTGAACAATTTCACCAATCCATGGAAAAAACTTGGGAGGCATACAACAACCGCATCTAA

Protein sequence

>Msa1214510

MYSTNSSLNGNNLAFSSKSPFCSFESNSTSSTDIENSHSPFPLPPFSFFQFPNYPDDIDPFQDSHQIFLQQHDVDFQLHHPPVVMMNNNSTDHHQRPSNSTIKANNNLLPAAAGKGKTVVDQQIQRKRSSKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVDWLLNQSKLEIKHLAREKNVNFPTKSASSTSECTEGVSSLDNEVGNQEEPQQQKLVMKRRNSTNKVCRKSAFNSIGREKARERARERTKEKKKARTSLVDESNSKQYNEEGIKTNLIWNPFESVEESAGTHQSTQDVNHPSFDHVKLIDEAEVETSYSQKAKEQHSDEDNSLFIMSKWSPPMMFNSLNNLQQHQFEQFHQSMEKTWEAYNNRI*