AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1331060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331060 MtrunA17_Chr4g0060031 94.675 338 13 3 1 334 1 337 0.0 593
Msa1331060 MtrunA17_Chr5g0415941 46.802 344 151 12 1 332 1 324 1.67e-81 250
Msa1331060 MtrunA17_Chr8g0362751 41.411 326 128 10 19 334 14 286 1.59e-56 185
Msa1331060 MtrunA17_Chr6g0450991 43.952 248 103 7 31 275 14 228 7.09e-48 162
Msa1331060 MtrunA17_Chr8g0362151 50.000 160 57 4 48 199 42 186 8.32e-39 139
Msa1331060 MtrunA17_Chr5g0416391 57.937 126 48 2 66 187 45 169 4.09e-38 137
Msa1331060 MtrunA17_Chr6g0453021 45.238 168 76 4 48 204 50 212 2.01e-36 132
Msa1331060 MtrunA17_Chr3g0123691 58.559 111 46 0 86 196 51 161 2.51e-36 132
Msa1331060 MtrunA17_Chr3g0119291 62.857 105 39 0 94 198 58 162 1.79e-35 129
Msa1331060 MtrunA17_Chr8g0381741 60.784 102 40 0 94 195 53 154 4.77e-35 129
Msa1331060 MtrunA17_Chr7g0217111 43.684 190 93 6 81 257 64 252 2.56e-33 124
Msa1331060 MtrunA17_Chr7g0265521 48.148 135 50 4 94 228 62 176 7.14e-30 114
Msa1331060 MtrunA17_Chr1g0179581 57.426 101 35 2 84 184 18 110 1.04e-28 107
Msa1331060 MtrunA17_Chr3g0127511 55.789 95 42 0 97 191 40 134 2.47e-28 110
Msa1331060 MtrunA17_Chr8g0346251 47.778 90 47 0 102 191 48 137 3.31e-24 99.4
Msa1331060 MtrunA17_Chr5g0403701 45.872 109 52 1 95 203 53 154 1.14e-21 91.3
Msa1331060 MtrunA17_Chr5g0403691 49.091 110 54 2 95 203 53 161 2.52e-21 90.9
Msa1331060 MtrunA17_Chr4g0055851 50.926 108 44 2 80 187 107 205 7.19e-21 90.9
Msa1331060 MtrunA17_Chr5g0399491 43.448 145 61 4 45 187 96 221 1.85e-19 87.0
Msa1331060 MtrunA17_Chr1g0175651 46.341 123 55 3 69 187 124 239 1.17e-18 84.7
Msa1331060 MtrunA17_Chr2g0308611 50.000 90 45 0 93 182 198 287 4.65e-18 84.0
Msa1331060 MtrunA17_Chr7g0258831 47.115 104 53 1 79 182 146 247 5.24e-18 83.2
Msa1331060 MtrunA17_Chr8g0335131 51.613 93 38 2 95 187 146 231 2.05e-17 81.6
Msa1331060 MtrunA17_Chr4g0054421 46.154 104 49 1 84 187 116 212 2.40e-17 80.9
Msa1331060 MtrunA17_Chr1g0151971 36.905 168 78 4 26 182 67 217 1.30e-16 79.0
Msa1331060 MtrunA17_Chr5g0400781 44.792 96 53 0 87 182 115 210 6.39e-16 76.6
Msa1331060 MtrunA17_Chr3g0135331 48.611 72 37 0 95 166 145 216 2.29e-14 72.8
Msa1331060 MtrunA17_Chr4g0044091 45.161 93 44 1 95 187 65 150 2.34e-14 70.9
Msa1331060 MtrunA17_Chr4g0071411 44.444 90 43 1 98 187 91 173 6.11e-14 70.1
Msa1331060 MtrunA17_Chr2g0299031 40.909 88 52 0 95 182 82 169 1.62e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331060 AT3G01470.1 45.205 219 88 6 52 267 32 221 9.55e-45 154
Msa1331060 AT4G40060.1 41.379 261 132 8 44 300 4 247 3.11e-40 143
Msa1331060 AT3G01220.1 59.130 115 43 1 94 208 86 196 2.42e-36 132
Msa1331060 AT2G22430.1 63.636 99 36 0 93 191 60 158 3.62e-36 133
Msa1331060 AT5G15150.1 65.957 94 32 0 94 187 114 207 5.99e-36 132
Msa1331060 AT1G69780.1 54.918 122 50 1 83 199 73 194 1.68e-35 130
Msa1331060 AT5G65310.2 62.626 99 37 0 93 191 52 150 2.13e-35 130
Msa1331060 AT5G65310.1 62.626 99 37 0 93 191 70 168 2.86e-35 130
Msa1331060 AT1G27045.1 44.134 179 80 4 23 200 14 173 4.53e-33 122
Msa1331060 AT1G26960.1 50.000 142 58 4 50 190 37 166 1.55e-31 119
Msa1331060 AT1G27045.4 45.181 166 71 4 23 187 14 160 3.80e-31 118
Msa1331060 AT1G27045.5 53.846 117 53 1 83 198 12 128 3.30e-30 114
Msa1331060 AT1G27045.3 53.846 117 53 1 83 198 12 128 3.30e-30 114
Msa1331060 AT1G27045.2 53.846 117 53 1 83 198 4 120 3.80e-30 113
Msa1331060 AT2G18550.1 48.120 133 54 3 65 197 39 156 4.32e-28 109
Msa1331060 AT2G46680.1 48.148 108 56 0 91 198 28 135 1.21e-27 108
Msa1331060 AT3G61890.1 51.485 101 48 1 98 198 33 132 5.74e-27 106
Msa1331060 AT2G46680.2 52.688 93 44 0 91 183 28 120 4.21e-26 104
Msa1331060 AT4G36740.2 50.485 103 44 1 95 197 56 151 1.84e-25 102
Msa1331060 AT2G36610.1 38.764 178 79 7 45 203 12 178 1.92e-25 101
Msa1331060 AT4G36740.1 50.485 103 44 1 95 197 55 150 2.10e-25 102
Msa1331060 AT5G03790.1 45.528 123 54 3 95 211 77 192 3.03e-25 102
Msa1331060 AT5G03790.2 53.763 93 36 1 95 187 77 162 4.60e-25 100
Msa1331060 AT5G66700.1 48.454 97 43 1 95 191 71 160 1.82e-22 94.4
Msa1331060 AT5G06710.1 48.624 109 40 2 79 187 183 275 1.56e-18 85.5
Msa1331060 AT3G60390.1 46.281 121 54 3 67 187 138 247 2.03e-18 84.7
Msa1331060 AT5G53980.1 46.667 90 48 0 95 184 11 100 8.11e-18 79.7
Msa1331060 AT5G47370.1 48.077 104 47 1 84 187 119 215 8.82e-18 82.4
Msa1331060 AT2G44910.1 51.613 93 38 1 95 187 163 248 1.44e-17 82.4
Msa1331060 AT4G16780.1 45.133 113 47 2 75 187 117 214 2.07e-17 81.6
Msa1331060 AT4G17460.1 47.619 105 47 2 84 187 123 220 3.67e-17 80.9
Msa1331060 AT2G22800.1 43.750 96 54 0 87 182 105 200 1.83e-15 75.9
Msa1331060 AT2G01430.1 42.478 113 51 3 80 187 121 224 7.58e-15 73.9
Msa1331060 AT4G37790.1 43.810 105 52 2 83 187 114 211 1.94e-14 72.8
Msa1331060 AT5G06710.4 54.412 68 22 1 79 146 183 241 1.47e-13 70.5
Msa1331060 AT2G01430.2 46.575 73 32 2 80 147 121 191 6.36e-12 64.7
Msa1331060 AT1G70920.1 43.011 93 46 1 95 187 69 154 2.33e-11 62.8
Msa1331060 AT1G70920.2 43.011 93 46 1 95 187 39 124 2.87e-11 62.0

Find 109 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAAAGAATTAATGCTTTC+TGG 0.113684 8_4:-50416638 Msa1331060:three_prime_UTR
CTCACTCACTTTGCACAAAA+AGG 0.203350 8_4:+50416825 None:intergenic
TAATTTACAATGCAACAAAA+TGG 0.203752 8_4:+50416688 None:intergenic
TCTTCTTCTACTTCTTTCTT+TGG 0.217329 8_4:-50418527 Msa1331060:intron
GGATTTGATCTTGACGAAAA+TGG 0.224618 8_4:-50418048 Msa1331060:CDS
AGCCTCAACAATTGACAATT+TGG 0.241624 8_4:+50417211 None:intergenic
TTGTAAATTAATGAAACTTT+TGG 0.268912 8_4:-50416675 Msa1331060:three_prime_UTR
AGCCACGACAAGTTGCTATT+TGG 0.283167 8_4:-50417876 Msa1331060:CDS
TACAAGAGCCACACCCATTT+CGG 0.288630 8_4:+50416736 None:intergenic
TGAGAGACGCCGTTTCTTCT+CGG 0.306253 8_4:+50417993 None:intergenic
ATTTCATTTCATACCCGAAA+TGG 0.312835 8_4:-50416750 Msa1331060:three_prime_UTR
TGCATATTTGAAATATTTGC+AGG 0.318619 8_4:+50418629 None:intergenic
TTGTATCTATATAGCTATTA+TGG 0.322660 8_4:-50418746 Msa1331060:five_prime_UTR
ATCATCAAGCTCTTTGGCCT+TGG 0.324405 8_4:-50416929 Msa1331060:CDS
ACAAGAGCCACACCCATTTC+GGG 0.325705 8_4:+50416737 None:intergenic
TTGAATAGGTTCAAGATCTA+TGG 0.343669 8_4:-50418124 Msa1331060:intron
TTCAGCAAGGAGTGACATAT+TGG 0.347228 8_4:-50417156 Msa1331060:CDS
TGTCTTCTTCATCTTGTGAT+AGG 0.364063 8_4:+50417051 None:intergenic
CATGATAATTCATCAAGTTA+TGG 0.374938 8_4:-50416969 Msa1331060:CDS
AATTAAAGATCTAAGACTTA+TGG 0.375155 8_4:+50418787 None:intergenic
AAGATCATCATCAAGCTCTT+TGG 0.376736 8_4:-50416935 Msa1331060:CDS
ACCAAGGTCTTTAGCTAGCT+TGG 0.382164 8_4:+50417903 None:intergenic
AATTTACAATGCAACAAAAT+GGG 0.386090 8_4:+50416689 None:intergenic
TATAAGATAAAGTTTAACTT+TGG 0.405131 8_4:-50418713 Msa1331060:five_prime_UTR
ACCAAAGGTTTATTCATTGT+TGG 0.412212 8_4:+50417260 None:intergenic
ATAATCCTTCTCAAGCTGTT+TGG 0.413395 8_4:+50417825 None:intergenic
TGAAACAAAGGAATTCTTGC+AGG 0.414573 8_4:-50417285 Msa1331060:CDS
GAAATGGGTGTGGCTCTTGT+AGG 0.419023 8_4:-50416734 Msa1331060:three_prime_UTR
GGAGGTGTGGGAACAACGGC+AGG 0.421932 8_4:+50418851 None:intergenic
ACCAACAATGAATAAACCTT+TGG 0.422093 8_4:-50417261 Msa1331060:CDS
TTGTGATAGATAAATATATA+TGG 0.425813 8_4:-50418678 Msa1331060:exon
AAGGAAGGAAAAGGTGCAAC+AGG 0.438515 8_4:-50418083 Msa1331060:CDS
TGATTTCAGTGATGTGGGAT+TGG 0.456744 8_4:+50418829 None:intergenic
TATATAGATACAAGCTAGCT+AGG 0.459954 8_4:+50418756 None:intergenic
ATTTCTTGAGAAAAGCTTTG+AGG 0.460124 8_4:-50417956 Msa1331060:CDS
ACCTTCTCAAAGAGAAAGAT+AGG 0.463134 8_4:-50417756 Msa1331060:CDS
GATTTCAGTGATGTGGGATT+GGG 0.463594 8_4:+50418830 None:intergenic
TGATGTGGGATTGGGAGGTG+TGG 0.470405 8_4:+50418838 None:intergenic
TTTCATTTCATACCCGAAAT+GGG 0.470838 8_4:-50416749 Msa1331060:three_prime_UTR
AGAAAGAAGTAGAAGAAGAA+AGG 0.472149 8_4:+50418531 None:intergenic
AGGTGCAACAGGTCTTTCTT+CGG 0.489691 8_4:-50418072 Msa1331060:CDS
TTTGGTTGATTCAGTTTCTG+AGG 0.492605 8_4:-50417243 Msa1331060:CDS
AGACTTATGGCGAAAGAAGC+TGG 0.493873 8_4:+50418800 None:intergenic
GGTAGCAAGCCTAACTGAAA+AGG 0.493946 8_4:-50417354 Msa1331060:CDS
ACCTATCTTTCTCTTTGAGA+AGG 0.495244 8_4:+50417755 None:intergenic
TTCAGTGATGTGGGATTGGG+AGG 0.501722 8_4:+50418833 None:intergenic
AAAGAGAATCAAACAAGAGA+TGG 0.506055 8_4:+50418948 None:intergenic
ATCCAAATTGTCAATTGTTG+AGG 0.508800 8_4:-50417213 Msa1331060:CDS
TGGCTCTTGTAGGATAGAAA+TGG 0.509467 8_4:-50416724 Msa1331060:three_prime_UTR
TTCATCAATCCGAGAAGAAA+CGG 0.510950 8_4:-50418002 Msa1331060:CDS
GACTCAATACAAAGTTTCAA+AGG 0.516349 8_4:+50418914 None:intergenic
TTGGTTGATTCAGTTTCTGA+GGG 0.528561 8_4:-50417242 Msa1331060:CDS
ACTCAATACAAAGTTTCAAA+GGG 0.532890 8_4:+50418915 None:intergenic
GAAAGATAGGTTACAATCTG+AGG 0.533848 8_4:-50417743 Msa1331060:intron
AAGATGTTCAAGGAAGGAAA+AGG 0.536023 8_4:-50418092 Msa1331060:CDS
ATACAAAGTTTCAAAGGGAG+GGG 0.536751 8_4:+50418920 None:intergenic
TTCAAAACCGTCGTGCAAGA+TGG 0.537462 8_4:-50417852 Msa1331060:CDS
GATGATGATTTCAGTGATGT+GGG 0.538439 8_4:+50418824 None:intergenic
TTTCATACCCGAAATGGGTG+TGG 0.538493 8_4:-50416744 Msa1331060:three_prime_UTR
CCATTACTCCGATCAAAAGA+AGG 0.543323 8_4:+50418880 None:intergenic
ATTTGAACATGAATATCAAT+CGG 0.545738 8_4:-50417075 Msa1331060:CDS
ACCAAGCTAGCTAAAGACCT+TGG 0.547629 8_4:-50417904 Msa1331060:CDS
GATGTGGGATTGGGAGGTGT+GGG 0.548439 8_4:+50418839 None:intergenic
GATTCAGTTTCTGAGGGTGA+AGG 0.550989 8_4:-50417236 Msa1331060:CDS
ATTTACAATGCAACAAAATG+GGG 0.551950 8_4:+50416690 None:intergenic
GAAAGGAAAAGAGAATCAAG+AGG 0.552633 8_4:+50418548 None:intergenic
AAAGTCAGAGAATGGCAAGT+TGG 0.554287 8_4:-50416777 Msa1331060:three_prime_UTR
TGCGTAATAAAGTCAGAGAA+TGG 0.558093 8_4:-50416785 Msa1331060:three_prime_UTR
AATACAAAGTTTCAAAGGGA+GGG 0.558496 8_4:+50418919 None:intergenic
CGAAAATGGAGAGGATGAGA+TGG 0.561405 8_4:-50418034 Msa1331060:CDS
GATAGATAAATATATATGGC+GGG 0.563209 8_4:-50418674 Msa1331060:exon
ATATTCATGTTCAAATACAT+AGG 0.565080 8_4:+50417082 None:intergenic
TGCAACAGGTCTTTCTTCGG+AGG 0.566461 8_4:-50418069 Msa1331060:CDS
TGATAGATAAATATATATGG+CGG 0.578645 8_4:-50418675 Msa1331060:exon
TCTTGAGAAAAGCTTTGAGG+AGG 0.578737 8_4:-50417953 Msa1331060:CDS
ACTGATGGAGTGTTAGAGAC+AGG 0.581498 8_4:-50417113 Msa1331060:CDS
GACAGCCCACGTTACACTGA+TGG 0.581501 8_4:-50417128 Msa1331060:CDS
GATAAATATATATGGCGGGT+GGG 0.581991 8_4:-50418670 Msa1331060:exon
TGATGATGATTTCAGTGATG+TGG 0.582510 8_4:+50418823 None:intergenic
AGATAAATATATATGGCGGG+TGG 0.584083 8_4:-50418671 Msa1331060:exon
TACAAAGTTTCAAAGGGAGG+GGG 0.589956 8_4:+50418921 None:intergenic
GAAGAAACGGCGTCTCTCAG+TGG 0.590083 8_4:-50417989 Msa1331060:CDS
TTGATGAATTATCATGTGGC+GGG 0.592126 8_4:+50416976 None:intergenic
ATTGGGAGGTGTGGGAACAA+CGG 0.592789 8_4:+50418847 None:intergenic
CTTGATGAATTATCATGTGG+CGG 0.594488 8_4:+50416975 None:intergenic
ATCAAGTTATGGATTTCAAG+AGG 0.600284 8_4:-50416958 Msa1331060:CDS
TGAATTATCATGTGGCGGGT+CGG 0.601580 8_4:+50416980 None:intergenic
ACAAGGTGAAAGTGAAACAA+AGG 0.601903 8_4:-50417297 Msa1331060:CDS
CTTGTCGTGGCTGCAAACCA+AGG 0.609721 8_4:+50417887 None:intergenic
TTGAAGATATTAGTTCAGCA+AGG 0.615993 8_4:-50417169 Msa1331060:CDS
TGGTCTTCCATCTTGCACGA+CGG 0.616539 8_4:+50417845 None:intergenic
GAAGACCAAACAGCTTGAGA+AGG 0.620125 8_4:-50417830 Msa1331060:CDS
TGATCTTGACGAAAATGGAG+AGG 0.622056 8_4:-50418043 Msa1331060:CDS
CAAGAGGGAAAATTCAAACA+AGG 0.630062 8_4:-50417314 Msa1331060:CDS
CAATACAAAGTTTCAAAGGG+AGG 0.631773 8_4:+50418918 None:intergenic
CTCTTGTAGGATAGAAATGG+CGG 0.634642 8_4:-50416721 Msa1331060:three_prime_UTR
AACACTCCATCAGTGTAACG+TGG 0.635850 8_4:+50417122 None:intergenic
AACCAAATAGCAACTTGTCG+TGG 0.636461 8_4:+50417874 None:intergenic
TAACTTGATGAATTATCATG+TGG 0.637883 8_4:+50416972 None:intergenic
AGATACAGAGACAGAACTAG+TGG 0.648443 8_4:+50418989 None:intergenic
CATATCATTTAATAAGACCA+AGG 0.657999 8_4:+50416912 None:intergenic
GAGGTGTGGGAACAACGGCA+GGG 0.660019 8_4:+50418852 None:intergenic
AATCAACAACAAACTCCTCG+TGG 0.662080 8_4:-50418587 Msa1331060:CDS
ACTTGCAAGAGAGAAACAAG+AGG 0.662555 8_4:-50417330 Msa1331060:CDS
TCAGAAACTGAATCAACCAA+AGG 0.671154 8_4:+50417245 None:intergenic
CTTGCAAGAGAGAAACAAGA+GGG 0.688671 8_4:-50417329 Msa1331060:CDS
ACACTCCATCAGTGTAACGT+GGG 0.696078 8_4:+50417123 None:intergenic
ACAACAAGCTTGAACCAGAG+AGG 0.699556 8_4:-50417930 Msa1331060:CDS
TGTTGAGAAGAGTTTCCACG+AGG 0.738171 8_4:+50418572 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAATATAGTATCTTAT+AGG - chr8_4:50417268-50417287 Msa1331060:CDS 10.0%
!! ATATTAATATAGTATCTTAT+AGG - chr8_4:50417268-50417287 Msa1331060:CDS 10.0%
!!! ATTTTTTTCTATGAGAAAAA+TGG + chr8_4:50416655-50416674 None:intergenic 15.0%
!!! TATAAGATAAAGTTTAACTT+TGG - chr8_4:50416977-50416996 Msa1331060:CDS 15.0%
!! TTGTGATAGATAAATATATA+TGG - chr8_4:50417012-50417031 Msa1331060:CDS 15.0%
!!! AGTTTCAAGATTTTAAATAA+TGG - chr8_4:50417371-50417390 Msa1331060:intron 15.0%
!!! ATGTAGTTTTAATAAAATAG+TGG - chr8_4:50417516-50417535 Msa1331060:intron 15.0%
!!! TTTTTGTTTTGTTTTTGAAT+AGG - chr8_4:50417552-50417571 Msa1331060:intron 15.0%
!!! TTGTAAATTAATGAAACTTT+TGG - chr8_4:50419015-50419034 Msa1331060:five_prime_UTR 15.0%
!!! ATTTTTTTCTATGAGAAAAA+TGG + chr8_4:50416655-50416674 None:intergenic 15.0%
!!! TATAAGATAAAGTTTAACTT+TGG - chr8_4:50416977-50416996 Msa1331060:CDS 15.0%
!! TTGTGATAGATAAATATATA+TGG - chr8_4:50417012-50417031 Msa1331060:CDS 15.0%
!!! AGTTTCAAGATTTTAAATAA+TGG - chr8_4:50417371-50417390 Msa1331060:intron 15.0%
!!! ATGTAGTTTTAATAAAATAG+TGG - chr8_4:50417516-50417535 Msa1331060:intron 15.0%
!!! TTTTTGTTTTGTTTTTGAAT+AGG - chr8_4:50417552-50417571 Msa1331060:intron 15.0%
!!! TTGTAAATTAATGAAACTTT+TGG - chr8_4:50419015-50419034 Msa1331060:five_prime_UTR 15.0%
!!! AATTAAAGATCTAAGACTTA+TGG + chr8_4:50416906-50416925 None:intergenic 20.0%
!! TTGTATCTATATAGCTATTA+TGG - chr8_4:50416944-50416963 Msa1331060:CDS 20.0%
!! TGATAGATAAATATATATGG+CGG - chr8_4:50417015-50417034 Msa1331060:CDS 20.0%
!!! TTCAAGATTTTAAATAATGG+TGG - chr8_4:50417374-50417393 Msa1331060:intron 20.0%
!! TTATAACATAATTCAGATCA+CGG - chr8_4:50417456-50417475 Msa1331060:intron 20.0%
!!! CTTAATTGTAAATTTGAGAT+CGG - chr8_4:50418052-50418071 Msa1331060:CDS 20.0%
!! ACATAAAATTCATGAAATTG+TGG - chr8_4:50418247-50418266 Msa1331060:intron 20.0%
!! ATATTCATGTTCAAATACAT+AGG + chr8_4:50418611-50418630 None:intergenic 20.0%
!! ATTTGAACATGAATATCAAT+CGG - chr8_4:50418615-50418634 Msa1331060:CDS 20.0%
!! AATTTACAATGCAACAAAAT+GGG + chr8_4:50419004-50419023 None:intergenic 20.0%
!! TAATTTACAATGCAACAAAA+TGG + chr8_4:50419005-50419024 None:intergenic 20.0%
!! TTAAAAGAATTAATGCTTTC+TGG - chr8_4:50419052-50419071 Msa1331060:five_prime_UTR 20.0%
!!! AATTAAAGATCTAAGACTTA+TGG + chr8_4:50416906-50416925 None:intergenic 20.0%
!! TTGTATCTATATAGCTATTA+TGG - chr8_4:50416944-50416963 Msa1331060:CDS 20.0%
!! TGATAGATAAATATATATGG+CGG - chr8_4:50417015-50417034 Msa1331060:CDS 20.0%
!!! TTCAAGATTTTAAATAATGG+TGG - chr8_4:50417374-50417393 Msa1331060:intron 20.0%
!! TTATAACATAATTCAGATCA+CGG - chr8_4:50417456-50417475 Msa1331060:intron 20.0%
!!! CTTAATTGTAAATTTGAGAT+CGG - chr8_4:50418052-50418071 Msa1331060:CDS 20.0%
!! ACATAAAATTCATGAAATTG+TGG - chr8_4:50418247-50418266 Msa1331060:intron 20.0%
!! ATATTCATGTTCAAATACAT+AGG + chr8_4:50418611-50418630 None:intergenic 20.0%
!! ATTTGAACATGAATATCAAT+CGG - chr8_4:50418615-50418634 Msa1331060:CDS 20.0%
!! AATTTACAATGCAACAAAAT+GGG + chr8_4:50419004-50419023 None:intergenic 20.0%
!! TAATTTACAATGCAACAAAA+TGG + chr8_4:50419005-50419024 None:intergenic 20.0%
!! TTAAAAGAATTAATGCTTTC+TGG - chr8_4:50419052-50419071 Msa1331060:five_prime_UTR 20.0%
! ACTCAATACAAAGTTTCAAA+GGG + chr8_4:50416778-50416797 None:intergenic 25.0%
! GATAGATAAATATATATGGC+GGG - chr8_4:50417016-50417035 Msa1331060:CDS 25.0%
!! TGCATATTTGAAATATTTGC+AGG + chr8_4:50417064-50417083 None:intergenic 25.0%
!!! ATCAATGTTTTGATGTCTTT+AGG + chr8_4:50417304-50417323 None:intergenic 25.0%
! TGAACATTAGACATGAAAAA+AGG - chr8_4:50418111-50418130 Msa1331060:CDS 25.0%
!!! TCAAGTTTTGTAAAGATGTA+AGG + chr8_4:50418676-50418695 None:intergenic 25.0%
! TAACTTGATGAATTATCATG+TGG + chr8_4:50418721-50418740 None:intergenic 25.0%
! CATGATAATTCATCAAGTTA+TGG - chr8_4:50418721-50418740 Msa1331060:five_prime_UTR 25.0%
! CATATCATTTAATAAGACCA+AGG + chr8_4:50418781-50418800 None:intergenic 25.0%
! ATTTACAATGCAACAAAATG+GGG + chr8_4:50419003-50419022 None:intergenic 25.0%
! ACTCAATACAAAGTTTCAAA+GGG + chr8_4:50416778-50416797 None:intergenic 25.0%
! GATAGATAAATATATATGGC+GGG - chr8_4:50417016-50417035 Msa1331060:CDS 25.0%
!! TGCATATTTGAAATATTTGC+AGG + chr8_4:50417064-50417083 None:intergenic 25.0%
!!! ATCAATGTTTTGATGTCTTT+AGG + chr8_4:50417304-50417323 None:intergenic 25.0%
! TGAACATTAGACATGAAAAA+AGG - chr8_4:50418111-50418130 Msa1331060:CDS 25.0%
!!! TCAAGTTTTGTAAAGATGTA+AGG + chr8_4:50418676-50418695 None:intergenic 25.0%
! TAACTTGATGAATTATCATG+TGG + chr8_4:50418721-50418740 None:intergenic 25.0%
! CATGATAATTCATCAAGTTA+TGG - chr8_4:50418721-50418740 Msa1331060:five_prime_UTR 25.0%
! CATATCATTTAATAAGACCA+AGG + chr8_4:50418781-50418800 None:intergenic 25.0%
! ATTTACAATGCAACAAAATG+GGG + chr8_4:50419003-50419022 None:intergenic 25.0%
AAAGAGAATCAAACAAGAGA+TGG + chr8_4:50416745-50416764 None:intergenic 30.0%
AATACAAAGTTTCAAAGGGA+GGG + chr8_4:50416774-50416793 None:intergenic 30.0%
GACTCAATACAAAGTTTCAA+AGG + chr8_4:50416779-50416798 None:intergenic 30.0%
TATATAGATACAAGCTAGCT+AGG + chr8_4:50416937-50416956 None:intergenic 30.0%
AGAAAGAAGTAGAAGAAGAA+AGG + chr8_4:50417162-50417181 None:intergenic 30.0%
TCTTCTTCTACTTCTTTCTT+TGG - chr8_4:50417163-50417182 Msa1331060:CDS 30.0%
! AGTTTTTGATATCTCTGCAA+CGG + chr8_4:50417435-50417454 None:intergenic 30.0%
TTGAATAGGTTCAAGATCTA+TGG - chr8_4:50417566-50417585 Msa1331060:intron 30.0%
ATTTCTTGAGAAAAGCTTTG+AGG - chr8_4:50417734-50417753 Msa1331060:intron 30.0%
TGTGGTTCACATAAAACTAT+TGG - chr8_4:50418265-50418284 Msa1331060:intron 30.0%
TCTTTGTGATGTTTCAATAC+AGG - chr8_4:50418315-50418334 Msa1331060:intron 30.0%
ACCAACAATGAATAAACCTT+TGG - chr8_4:50418429-50418448 Msa1331060:intron 30.0%
ACCAAAGGTTTATTCATTGT+TGG + chr8_4:50418433-50418452 None:intergenic 30.0%
ATCCAAATTGTCAATTGTTG+AGG - chr8_4:50418477-50418496 Msa1331060:intron 30.0%
TTGAAGATATTAGTTCAGCA+AGG - chr8_4:50418521-50418540 Msa1331060:intron 30.0%
!! AGTTTTGTAAAGATGTAAGG+AGG + chr8_4:50418673-50418692 None:intergenic 30.0%
ATCAAGTTATGGATTTCAAG+AGG - chr8_4:50418732-50418751 Msa1331060:five_prime_UTR 30.0%
ATTTCATTTCATACCCGAAA+TGG - chr8_4:50418940-50418959 Msa1331060:five_prime_UTR 30.0%
TTTCATTTCATACCCGAAAT+GGG - chr8_4:50418941-50418960 Msa1331060:five_prime_UTR 30.0%
AAAGAGAATCAAACAAGAGA+TGG + chr8_4:50416745-50416764 None:intergenic 30.0%
AATACAAAGTTTCAAAGGGA+GGG + chr8_4:50416774-50416793 None:intergenic 30.0%
GACTCAATACAAAGTTTCAA+AGG + chr8_4:50416779-50416798 None:intergenic 30.0%
TATATAGATACAAGCTAGCT+AGG + chr8_4:50416937-50416956 None:intergenic 30.0%
AGAAAGAAGTAGAAGAAGAA+AGG + chr8_4:50417162-50417181 None:intergenic 30.0%
TCTTCTTCTACTTCTTTCTT+TGG - chr8_4:50417163-50417182 Msa1331060:CDS 30.0%
! AGTTTTTGATATCTCTGCAA+CGG + chr8_4:50417435-50417454 None:intergenic 30.0%
TTGAATAGGTTCAAGATCTA+TGG - chr8_4:50417566-50417585 Msa1331060:intron 30.0%
ATTTCTTGAGAAAAGCTTTG+AGG - chr8_4:50417734-50417753 Msa1331060:intron 30.0%
TGTGGTTCACATAAAACTAT+TGG - chr8_4:50418265-50418284 Msa1331060:intron 30.0%
TCTTTGTGATGTTTCAATAC+AGG - chr8_4:50418315-50418334 Msa1331060:intron 30.0%
ACCAACAATGAATAAACCTT+TGG - chr8_4:50418429-50418448 Msa1331060:intron 30.0%
ACCAAAGGTTTATTCATTGT+TGG + chr8_4:50418433-50418452 None:intergenic 30.0%
ATCCAAATTGTCAATTGTTG+AGG - chr8_4:50418477-50418496 Msa1331060:intron 30.0%
TTGAAGATATTAGTTCAGCA+AGG - chr8_4:50418521-50418540 Msa1331060:intron 30.0%
!! AGTTTTGTAAAGATGTAAGG+AGG + chr8_4:50418673-50418692 None:intergenic 30.0%
ATCAAGTTATGGATTTCAAG+AGG - chr8_4:50418732-50418751 Msa1331060:five_prime_UTR 30.0%
ATTTCATTTCATACCCGAAA+TGG - chr8_4:50418940-50418959 Msa1331060:five_prime_UTR 30.0%
TTTCATTTCATACCCGAAAT+GGG - chr8_4:50418941-50418960 Msa1331060:five_prime_UTR 30.0%
! TGAGAAAAATGGACTCTGTT+GGG + chr8_4:50416644-50416663 None:intergenic 35.0%
! ATGAGAAAAATGGACTCTGT+TGG + chr8_4:50416645-50416664 None:intergenic 35.0%
ATACAAAGTTTCAAAGGGAG+GGG + chr8_4:50416773-50416792 None:intergenic 35.0%
CAATACAAAGTTTCAAAGGG+AGG + chr8_4:50416775-50416794 None:intergenic 35.0%
! TCTTGTTGCCTTCTTTTGAT+CGG - chr8_4:50416802-50416821 Msa1331060:three_prime_UTR 35.0%
! CTTCTTTTGATCGGAGTAAT+GGG - chr8_4:50416811-50416830 Msa1331060:three_prime_UTR 35.0%
GATGATGATTTCAGTGATGT+GGG + chr8_4:50416869-50416888 None:intergenic 35.0%
! TGATGATGATTTCAGTGATG+TGG + chr8_4:50416870-50416889 None:intergenic 35.0%
! AGATAAATATATATGGCGGG+TGG - chr8_4:50417019-50417038 Msa1331060:CDS 35.0%
!! GATAAATATATATGGCGGGT+GGG - chr8_4:50417020-50417039 Msa1331060:CDS 35.0%
GAAAGGAAAAGAGAATCAAG+AGG + chr8_4:50417145-50417164 None:intergenic 35.0%
!!! GTGAGTTTTGAAGATGTTCA+AGG - chr8_4:50417588-50417607 Msa1331060:intron 35.0%
!!! GTTTTGAAGATGTTCAAGGA+AGG - chr8_4:50417592-50417611 Msa1331060:intron 35.0%
AAGATGTTCAAGGAAGGAAA+AGG - chr8_4:50417598-50417617 Msa1331060:intron 35.0%
GGATTTGATCTTGACGAAAA+TGG - chr8_4:50417642-50417661 Msa1331060:intron 35.0%
TTCATCAATCCGAGAAGAAA+CGG - chr8_4:50417688-50417707 Msa1331060:intron 35.0%
ATAATCCTTCTCAAGCTGTT+TGG + chr8_4:50417868-50417887 None:intergenic 35.0%
ACCTTCTCAAAGAGAAAGAT+AGG - chr8_4:50417934-50417953 Msa1331060:CDS 35.0%
! ACCTATCTTTCTCTTTGAGA+AGG + chr8_4:50417938-50417957 None:intergenic 35.0%
GAAAGATAGGTTACAATCTG+AGG - chr8_4:50417947-50417966 Msa1331060:CDS 35.0%
! TTGCAAGTACCTTTTCAGTT+AGG + chr8_4:50418348-50418367 None:intergenic 35.0%
CAAGAGGGAAAATTCAAACA+AGG - chr8_4:50418376-50418395 Msa1331060:intron 35.0%
ACAAGGTGAAAGTGAAACAA+AGG - chr8_4:50418393-50418412 Msa1331060:intron 35.0%
TGAAACAAAGGAATTCTTGC+AGG - chr8_4:50418405-50418424 Msa1331060:intron 35.0%
TCAGAAACTGAATCAACCAA+AGG + chr8_4:50418448-50418467 None:intergenic 35.0%
! TTTGGTTGATTCAGTTTCTG+AGG - chr8_4:50418447-50418466 Msa1331060:intron 35.0%
! TTGGTTGATTCAGTTTCTGA+GGG - chr8_4:50418448-50418467 Msa1331060:intron 35.0%
AGCCTCAACAATTGACAATT+TGG + chr8_4:50418482-50418501 None:intergenic 35.0%
TGTCTTCTTCATCTTGTGAT+AGG + chr8_4:50418642-50418661 None:intergenic 35.0%
TTGATGAATTATCATGTGGC+GGG + chr8_4:50418717-50418736 None:intergenic 35.0%
CTTGATGAATTATCATGTGG+CGG + chr8_4:50418718-50418737 None:intergenic 35.0%
AAGATCATCATCAAGCTCTT+TGG - chr8_4:50418755-50418774 Msa1331060:five_prime_UTR 35.0%
TCACTCACTTTGCACAAAAA+GGG + chr8_4:50418867-50418886 None:intergenic 35.0%
TGCGTAATAAAGTCAGAGAA+TGG - chr8_4:50418905-50418924 Msa1331060:five_prime_UTR 35.0%
! TGAGAAAAATGGACTCTGTT+GGG + chr8_4:50416644-50416663 None:intergenic 35.0%
! ATGAGAAAAATGGACTCTGT+TGG + chr8_4:50416645-50416664 None:intergenic 35.0%
ATACAAAGTTTCAAAGGGAG+GGG + chr8_4:50416773-50416792 None:intergenic 35.0%
CAATACAAAGTTTCAAAGGG+AGG + chr8_4:50416775-50416794 None:intergenic 35.0%
! TCTTGTTGCCTTCTTTTGAT+CGG - chr8_4:50416802-50416821 Msa1331060:three_prime_UTR 35.0%
! CTTCTTTTGATCGGAGTAAT+GGG - chr8_4:50416811-50416830 Msa1331060:three_prime_UTR 35.0%
GATGATGATTTCAGTGATGT+GGG + chr8_4:50416869-50416888 None:intergenic 35.0%
! TGATGATGATTTCAGTGATG+TGG + chr8_4:50416870-50416889 None:intergenic 35.0%
! AGATAAATATATATGGCGGG+TGG - chr8_4:50417019-50417038 Msa1331060:CDS 35.0%
!! GATAAATATATATGGCGGGT+GGG - chr8_4:50417020-50417039 Msa1331060:CDS 35.0%
GAAAGGAAAAGAGAATCAAG+AGG + chr8_4:50417145-50417164 None:intergenic 35.0%
!!! GTGAGTTTTGAAGATGTTCA+AGG - chr8_4:50417588-50417607 Msa1331060:intron 35.0%
!!! GTTTTGAAGATGTTCAAGGA+AGG - chr8_4:50417592-50417611 Msa1331060:intron 35.0%
AAGATGTTCAAGGAAGGAAA+AGG - chr8_4:50417598-50417617 Msa1331060:intron 35.0%
GGATTTGATCTTGACGAAAA+TGG - chr8_4:50417642-50417661 Msa1331060:intron 35.0%
TTCATCAATCCGAGAAGAAA+CGG - chr8_4:50417688-50417707 Msa1331060:intron 35.0%
ATAATCCTTCTCAAGCTGTT+TGG + chr8_4:50417868-50417887 None:intergenic 35.0%
ACCTTCTCAAAGAGAAAGAT+AGG - chr8_4:50417934-50417953 Msa1331060:CDS 35.0%
! ACCTATCTTTCTCTTTGAGA+AGG + chr8_4:50417938-50417957 None:intergenic 35.0%
GAAAGATAGGTTACAATCTG+AGG - chr8_4:50417947-50417966 Msa1331060:CDS 35.0%
! TTGCAAGTACCTTTTCAGTT+AGG + chr8_4:50418348-50418367 None:intergenic 35.0%
CAAGAGGGAAAATTCAAACA+AGG - chr8_4:50418376-50418395 Msa1331060:intron 35.0%
ACAAGGTGAAAGTGAAACAA+AGG - chr8_4:50418393-50418412 Msa1331060:intron 35.0%
TGAAACAAAGGAATTCTTGC+AGG - chr8_4:50418405-50418424 Msa1331060:intron 35.0%
TCAGAAACTGAATCAACCAA+AGG + chr8_4:50418448-50418467 None:intergenic 35.0%
! TTTGGTTGATTCAGTTTCTG+AGG - chr8_4:50418447-50418466 Msa1331060:intron 35.0%
! TTGGTTGATTCAGTTTCTGA+GGG - chr8_4:50418448-50418467 Msa1331060:intron 35.0%
AGCCTCAACAATTGACAATT+TGG + chr8_4:50418482-50418501 None:intergenic 35.0%
TGTCTTCTTCATCTTGTGAT+AGG + chr8_4:50418642-50418661 None:intergenic 35.0%
TTGATGAATTATCATGTGGC+GGG + chr8_4:50418717-50418736 None:intergenic 35.0%
CTTGATGAATTATCATGTGG+CGG + chr8_4:50418718-50418737 None:intergenic 35.0%
AAGATCATCATCAAGCTCTT+TGG - chr8_4:50418755-50418774 Msa1331060:five_prime_UTR 35.0%
TCACTCACTTTGCACAAAAA+GGG + chr8_4:50418867-50418886 None:intergenic 35.0%
TGCGTAATAAAGTCAGAGAA+TGG - chr8_4:50418905-50418924 Msa1331060:five_prime_UTR 35.0%
AGATACAGAGACAGAACTAG+TGG + chr8_4:50416704-50416723 None:intergenic 40.0%
TACAAAGTTTCAAAGGGAGG+GGG + chr8_4:50416772-50416791 None:intergenic 40.0%
CCATTACTCCGATCAAAAGA+AGG + chr8_4:50416813-50416832 None:intergenic 40.0%
! CCTTCTTTTGATCGGAGTAA+TGG - chr8_4:50416810-50416829 Msa1331060:three_prime_UTR 40.0%
GATTTCAGTGATGTGGGATT+GGG + chr8_4:50416863-50416882 None:intergenic 40.0%
TGATTTCAGTGATGTGGGAT+TGG + chr8_4:50416864-50416883 None:intergenic 40.0%
!!! GGTGGGAGAGTTTTTTCAAA+TGG - chr8_4:50417037-50417056 Msa1331060:CDS 40.0%
AATCAACAACAAACTCCTCG+TGG - chr8_4:50417103-50417122 Msa1331060:CDS 40.0%
TAGTATCTTATAGGCCGATG+CGG - chr8_4:50417277-50417296 Msa1331060:CDS 40.0%
TGATCTTGACGAAAATGGAG+AGG - chr8_4:50417647-50417666 Msa1331060:intron 40.0%
!! TCTTGAGAAAAGCTTTGAGG+AGG - chr8_4:50417737-50417756 Msa1331060:intron 40.0%
AACCAAATAGCAACTTGTCG+TGG + chr8_4:50417819-50417838 None:intergenic 40.0%
ACTTGCAAGAGAGAAACAAG+AGG - chr8_4:50418360-50418379 Msa1331060:intron 40.0%
CTTGCAAGAGAGAAACAAGA+GGG - chr8_4:50418361-50418380 Msa1331060:intron 40.0%
TTCAGCAAGGAGTGACATAT+TGG - chr8_4:50418534-50418553 Msa1331060:CDS 40.0%
CTCACTCACTTTGCACAAAA+AGG + chr8_4:50418868-50418887 None:intergenic 40.0%
AAAGTCAGAGAATGGCAAGT+TGG - chr8_4:50418913-50418932 Msa1331060:five_prime_UTR 40.0%
TGGCTCTTGTAGGATAGAAA+TGG - chr8_4:50418966-50418985 Msa1331060:five_prime_UTR 40.0%
CTCTTGTAGGATAGAAATGG+CGG - chr8_4:50418969-50418988 Msa1331060:five_prime_UTR 40.0%
AGATACAGAGACAGAACTAG+TGG + chr8_4:50416704-50416723 None:intergenic 40.0%
TACAAAGTTTCAAAGGGAGG+GGG + chr8_4:50416772-50416791 None:intergenic 40.0%
CCATTACTCCGATCAAAAGA+AGG + chr8_4:50416813-50416832 None:intergenic 40.0%
! CCTTCTTTTGATCGGAGTAA+TGG - chr8_4:50416810-50416829 Msa1331060:three_prime_UTR 40.0%
GATTTCAGTGATGTGGGATT+GGG + chr8_4:50416863-50416882 None:intergenic 40.0%
TGATTTCAGTGATGTGGGAT+TGG + chr8_4:50416864-50416883 None:intergenic 40.0%
!!! GGTGGGAGAGTTTTTTCAAA+TGG - chr8_4:50417037-50417056 Msa1331060:CDS 40.0%
AATCAACAACAAACTCCTCG+TGG - chr8_4:50417103-50417122 Msa1331060:CDS 40.0%
TAGTATCTTATAGGCCGATG+CGG - chr8_4:50417277-50417296 Msa1331060:CDS 40.0%
TGATCTTGACGAAAATGGAG+AGG - chr8_4:50417647-50417666 Msa1331060:intron 40.0%
!! TCTTGAGAAAAGCTTTGAGG+AGG - chr8_4:50417737-50417756 Msa1331060:intron 40.0%
AACCAAATAGCAACTTGTCG+TGG + chr8_4:50417819-50417838 None:intergenic 40.0%
ACTTGCAAGAGAGAAACAAG+AGG - chr8_4:50418360-50418379 Msa1331060:intron 40.0%
CTTGCAAGAGAGAAACAAGA+GGG - chr8_4:50418361-50418380 Msa1331060:intron 40.0%
TTCAGCAAGGAGTGACATAT+TGG - chr8_4:50418534-50418553 Msa1331060:CDS 40.0%
CTCACTCACTTTGCACAAAA+AGG + chr8_4:50418868-50418887 None:intergenic 40.0%
AAAGTCAGAGAATGGCAAGT+TGG - chr8_4:50418913-50418932 Msa1331060:five_prime_UTR 40.0%
TGGCTCTTGTAGGATAGAAA+TGG - chr8_4:50418966-50418985 Msa1331060:five_prime_UTR 40.0%
CTCTTGTAGGATAGAAATGG+CGG - chr8_4:50418969-50418988 Msa1331060:five_prime_UTR 40.0%
AGACTTATGGCGAAAGAAGC+TGG + chr8_4:50416893-50416912 None:intergenic 45.0%
TGTTGAGAAGAGTTTCCACG+AGG + chr8_4:50417121-50417140 None:intergenic 45.0%
!! TGATGTCTTTAGGACCGCAT+CGG + chr8_4:50417294-50417313 None:intergenic 45.0%
TGCGATTCAGATTGCAATCG+TGG - chr8_4:50417326-50417345 Msa1331060:CDS 45.0%
! AAGGAAGGAAAAGGTGCAAC+AGG - chr8_4:50417607-50417626 Msa1331060:intron 45.0%
AGGTGCAACAGGTCTTTCTT+CGG - chr8_4:50417618-50417637 Msa1331060:intron 45.0%
CGAAAATGGAGAGGATGAGA+TGG - chr8_4:50417656-50417675 Msa1331060:intron 45.0%
ACAACAAGCTTGAACCAGAG+AGG - chr8_4:50417760-50417779 Msa1331060:CDS 45.0%
ACCAAGCTAGCTAAAGACCT+TGG - chr8_4:50417786-50417805 Msa1331060:CDS 45.0%
ACCAAGGTCTTTAGCTAGCT+TGG + chr8_4:50417790-50417809 None:intergenic 45.0%
! AGCCACGACAAGTTGCTATT+TGG - chr8_4:50417814-50417833 Msa1331060:CDS 45.0%
TTCAAAACCGTCGTGCAAGA+TGG - chr8_4:50417838-50417857 Msa1331060:CDS 45.0%
GAAGACCAAACAGCTTGAGA+AGG - chr8_4:50417860-50417879 Msa1331060:CDS 45.0%
GGTAGCAAGCCTAACTGAAA+AGG - chr8_4:50418336-50418355 Msa1331060:intron 45.0%
! GATTCAGTTTCTGAGGGTGA+AGG - chr8_4:50418454-50418473 Msa1331060:intron 45.0%
ACACTCCATCAGTGTAACGT+GGG + chr8_4:50418570-50418589 None:intergenic 45.0%
AACACTCCATCAGTGTAACG+TGG + chr8_4:50418571-50418590 None:intergenic 45.0%
! ACTGATGGAGTGTTAGAGAC+AGG - chr8_4:50418577-50418596 Msa1331060:CDS 45.0%
!! TGAATTATCATGTGGCGGGT+CGG + chr8_4:50418713-50418732 None:intergenic 45.0%
ATCATCAAGCTCTTTGGCCT+TGG - chr8_4:50418761-50418780 Msa1331060:five_prime_UTR 45.0%
TTTCATACCCGAAATGGGTG+TGG - chr8_4:50418946-50418965 Msa1331060:five_prime_UTR 45.0%
TACAAGAGCCACACCCATTT+CGG + chr8_4:50418957-50418976 None:intergenic 45.0%
AGACTTATGGCGAAAGAAGC+TGG + chr8_4:50416893-50416912 None:intergenic 45.0%
TGTTGAGAAGAGTTTCCACG+AGG + chr8_4:50417121-50417140 None:intergenic 45.0%
!! TGATGTCTTTAGGACCGCAT+CGG + chr8_4:50417294-50417313 None:intergenic 45.0%
TGCGATTCAGATTGCAATCG+TGG - chr8_4:50417326-50417345 Msa1331060:CDS 45.0%
! AAGGAAGGAAAAGGTGCAAC+AGG - chr8_4:50417607-50417626 Msa1331060:intron 45.0%
AGGTGCAACAGGTCTTTCTT+CGG - chr8_4:50417618-50417637 Msa1331060:intron 45.0%
CGAAAATGGAGAGGATGAGA+TGG - chr8_4:50417656-50417675 Msa1331060:intron 45.0%
ACAACAAGCTTGAACCAGAG+AGG - chr8_4:50417760-50417779 Msa1331060:CDS 45.0%
ACCAAGCTAGCTAAAGACCT+TGG - chr8_4:50417786-50417805 Msa1331060:CDS 45.0%
ACCAAGGTCTTTAGCTAGCT+TGG + chr8_4:50417790-50417809 None:intergenic 45.0%
! AGCCACGACAAGTTGCTATT+TGG - chr8_4:50417814-50417833 Msa1331060:CDS 45.0%
TTCAAAACCGTCGTGCAAGA+TGG - chr8_4:50417838-50417857 Msa1331060:CDS 45.0%
GAAGACCAAACAGCTTGAGA+AGG - chr8_4:50417860-50417879 Msa1331060:CDS 45.0%
GGTAGCAAGCCTAACTGAAA+AGG - chr8_4:50418336-50418355 Msa1331060:intron 45.0%
! GATTCAGTTTCTGAGGGTGA+AGG - chr8_4:50418454-50418473 Msa1331060:intron 45.0%
ACACTCCATCAGTGTAACGT+GGG + chr8_4:50418570-50418589 None:intergenic 45.0%
AACACTCCATCAGTGTAACG+TGG + chr8_4:50418571-50418590 None:intergenic 45.0%
! ACTGATGGAGTGTTAGAGAC+AGG - chr8_4:50418577-50418596 Msa1331060:CDS 45.0%
!! TGAATTATCATGTGGCGGGT+CGG + chr8_4:50418713-50418732 None:intergenic 45.0%
ATCATCAAGCTCTTTGGCCT+TGG - chr8_4:50418761-50418780 Msa1331060:five_prime_UTR 45.0%
TTTCATACCCGAAATGGGTG+TGG - chr8_4:50418946-50418965 Msa1331060:five_prime_UTR 45.0%
TACAAGAGCCACACCCATTT+CGG + chr8_4:50418957-50418976 None:intergenic 45.0%
! ATTGGGAGGTGTGGGAACAA+CGG + chr8_4:50416846-50416865 None:intergenic 50.0%
TTCAGTGATGTGGGATTGGG+AGG + chr8_4:50416860-50416879 None:intergenic 50.0%
TGCAACAGGTCTTTCTTCGG+AGG - chr8_4:50417621-50417640 Msa1331060:intron 50.0%
TGAGAGACGCCGTTTCTTCT+CGG + chr8_4:50417700-50417719 None:intergenic 50.0%
!! GCTAGCTTGGTTTTCCTCTC+TGG + chr8_4:50417777-50417796 None:intergenic 50.0%
TGGTCTTCCATCTTGCACGA+CGG + chr8_4:50417848-50417867 None:intergenic 50.0%
ACAAGAGCCACACCCATTTC+GGG + chr8_4:50418956-50418975 None:intergenic 50.0%
GAAATGGGTGTGGCTCTTGT+AGG - chr8_4:50418956-50418975 Msa1331060:five_prime_UTR 50.0%
! ATTGGGAGGTGTGGGAACAA+CGG + chr8_4:50416846-50416865 None:intergenic 50.0%
TTCAGTGATGTGGGATTGGG+AGG + chr8_4:50416860-50416879 None:intergenic 50.0%
TGCAACAGGTCTTTCTTCGG+AGG - chr8_4:50417621-50417640 Msa1331060:intron 50.0%
TGAGAGACGCCGTTTCTTCT+CGG + chr8_4:50417700-50417719 None:intergenic 50.0%
!! GCTAGCTTGGTTTTCCTCTC+TGG + chr8_4:50417777-50417796 None:intergenic 50.0%
TGGTCTTCCATCTTGCACGA+CGG + chr8_4:50417848-50417867 None:intergenic 50.0%
ACAAGAGCCACACCCATTTC+GGG + chr8_4:50418956-50418975 None:intergenic 50.0%
GAAATGGGTGTGGCTCTTGT+AGG - chr8_4:50418956-50418975 Msa1331060:five_prime_UTR 50.0%
! GATGTGGGATTGGGAGGTGT+GGG + chr8_4:50416854-50416873 None:intergenic 55.0%
TGATGTGGGATTGGGAGGTG+TGG + chr8_4:50416855-50416874 None:intergenic 55.0%
GAAGAAACGGCGTCTCTCAG+TGG - chr8_4:50417701-50417720 Msa1331060:intron 55.0%
CTTGTCGTGGCTGCAAACCA+AGG + chr8_4:50417806-50417825 None:intergenic 55.0%
GACAGCCCACGTTACACTGA+TGG - chr8_4:50418562-50418581 Msa1331060:CDS 55.0%
! GATGTGGGATTGGGAGGTGT+GGG + chr8_4:50416854-50416873 None:intergenic 55.0%
TGATGTGGGATTGGGAGGTG+TGG + chr8_4:50416855-50416874 None:intergenic 55.0%
GAAGAAACGGCGTCTCTCAG+TGG - chr8_4:50417701-50417720 Msa1331060:intron 55.0%
CTTGTCGTGGCTGCAAACCA+AGG + chr8_4:50417806-50417825 None:intergenic 55.0%
GACAGCCCACGTTACACTGA+TGG - chr8_4:50418562-50418581 Msa1331060:CDS 55.0%
GAGGTGTGGGAACAACGGCA+GGG + chr8_4:50416841-50416860 None:intergenic 60.0%
GAGGTGTGGGAACAACGGCA+GGG + chr8_4:50416841-50416860 None:intergenic 60.0%
! GGAGGTGTGGGAACAACGGC+AGG + chr8_4:50416842-50416861 None:intergenic 65.0%
! GGAGGTGTGGGAACAACGGC+AGG + chr8_4:50416842-50416861 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 50416635 50419077 50416635 ID=Msa1331060;Name=Msa1331060
chr8_4 mRNA 50416635 50419077 50416635 ID=Msa1331060-mRNA-1;Parent=Msa1331060;Name=Msa1331060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=396|1|1|1|1|1|3|285|334
chr8_4 exon 50416635 50417375 50416635 ID=Msa1331060-mRNA-1:exon:14740;Parent=Msa1331060-mRNA-1
chr8_4 exon 50417744 50418138 50417744 ID=Msa1331060-mRNA-1:exon:14739;Parent=Msa1331060-mRNA-1
chr8_4 exon 50418528 50419077 50418528 ID=Msa1331060-mRNA-1:exon:14738;Parent=Msa1331060-mRNA-1
chr8_4 five_prime_UTR 50418682 50419077 50418682 ID=Msa1331060-mRNA-1:five_prime_utr;Parent=Msa1331060-mRNA-1
chr8_4 CDS 50418528 50418681 50418528 ID=Msa1331060-mRNA-1:cds;Parent=Msa1331060-mRNA-1
chr8_4 CDS 50417744 50418138 50417744 ID=Msa1331060-mRNA-1:cds;Parent=Msa1331060-mRNA-1
chr8_4 CDS 50416920 50417375 50416920 ID=Msa1331060-mRNA-1:cds;Parent=Msa1331060-mRNA-1
chr8_4 three_prime_UTR 50416635 50416919 50416635 ID=Msa1331060-mRNA-1:three_prime_utr;Parent=Msa1331060-mRNA-1
Gene Sequence

>Msa1331060

ATGGCGGGTGGGAGAGTTTTTTCAAATGGTCCTGCAAATATTTCAAATATGCATATGAATATTTTGCTTCAGAATCAACAACAAACTCCTCGTGGAAACTCTTCTCAACAACCTCTTGATTCTCTTTTCCTTTCTTCTTCTACTTCTTTCTTTGGTTCAAGATCTATGGTGAGTTTTGAAGATGTTCAAGGAAGGAAAAGGTGCAACAGGTCTTTCTTCGGAGGATTTGATCTTGACGAAAATGGAGAGGATGAGATGGATGAGTACTTTCATCAATCCGAGAAGAAACGGCGTCTCTCAGTGGATCAAGTTCAATTTCTTGAGAAAAGCTTTGAGGAGGACAACAAGCTTGAACCAGAGAGGAAAACCAAGCTAGCTAAAGACCTTGGTTTGCAGCCACGACAAGTTGCTATTTGGTTTCAAAACCGTCGTGCAAGATGGAAGACCAAACAGCTTGAGAAGGATTATGATTCTCTTAATGATAGTTATGAGTCTCTTAAGACAGATTATGACAACCTTCTCAAAGAGAAAGATAGGTTACAATCTGAGGTAGCAAGCCTAACTGAAAAGGTACTTGCAAGAGAGAAACAAGAGGGAAAATTCAAACAAGGTGAAAGTGAAACAAAGGAATTCTTGCAGGAACCAACAATGAATAAACCTTTGGTTGATTCAGTTTCTGAGGGTGAAGGATCCAAATTGTCAATTGTTGAGGCTTCTAATAACAATAACAAACTTGAAGATATTAGTTCAGCAAGGAGTGACATATTGGATTGTGACAGCCCACGTTACACTGATGGAGTGTTAGAGACAGGTGATTCTTCCTATGTATTTGAACATGAATATCAATCGGACCTATCACAAGATGAAGAAGACAATTTATTGCCTCCTTACATCTTTACAAAACTTGAAGATGTGAATTACTCCGACCCGCCACATGATAATTCATCAAGTTATGGATTTCAAGAGGAAGATCATCATCAAGCTCTTTGGCCTTGGTCTTATTAA
Protein sequence

>Msa1331060

MAGGRVFSNGPANISNMHMNILLQNQQQTPRGNSSQQPLDSLFLSSSTSFFGSRSMVSFEDVQGRKRCNRSFFGGFDLDENGEDEMDEYFHQSEKKRRLSVDQVQFLEKSFEEDNKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDSLNDSYESLKTDYDNLLKEKDRLQSEVASLTEKVLAREKQEGKFKQGESETKEFLQEPTMNKPLVDSVSEGEGSKLSIVEASNNNNKLEDISSARSDILDCDSPRYTDGVLETGDSSYVFEHEYQSDLSQDEEDNLLPPYIFTKLEDVNYSDPPHDNSSSYGFQEEDHHQALWPWSY*