Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333790 | G7JLM9 | 59.864 | 147 | 32 | 3 | 23 | 163 | 75 | 200 | 2.03e-40 | 149 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1224540 | Msa1333790 | 0.850583 | 1.546027e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333790 | MtrunA17_Chr4g0075841 | 66.216 | 74 | 17 | 1 | 90 | 163 | 1 | 66 | 3.26e-24 | 93.2 |
| Msa1333790 | MtrunA17_Chr4g0075851 | 44.000 | 125 | 23 | 2 | 6 | 83 | 17 | 141 | 7.07e-24 | 94.7 |
| Msa1333790 | MtrunA17_Chr4g0075811 | 68.333 | 60 | 19 | 0 | 228 | 287 | 28 | 87 | 9.01e-20 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTATTTGATTTGATTTA+AGG | 0.086858 | 8_4:-54035968 | None:intergenic |
| CAAACTCTTCGTGATAATTT+TGG | 0.137277 | 8_4:+54038657 | Msa1333790:three_prime_UTR |
| GACAATTCCACTTCCCTTCT+TGG | 0.194651 | 8_4:-54038111 | None:intergenic |
| CTTACATTCACTCACTTGTT+TGG | 0.211154 | 8_4:+54038176 | Msa1333790:CDS |
| GACAACTCCACTTCCCTTCT+TGG | 0.225568 | 8_4:-54038054 | None:intergenic |
| TGTGACTTCACTGGCCTAAT+TGG | 0.247029 | 8_4:-54037499 | None:intergenic |
| TTACATTCACTCACTTGTTT+GGG | 0.319797 | 8_4:+54038177 | Msa1333790:CDS |
| AATAAGCCTGACTTCTTTGT+TGG | 0.323715 | 8_4:+54038299 | Msa1333790:CDS |
| TGGATCCATAGCAGTAGTTC+TGG | 0.331711 | 8_4:-54037479 | None:intergenic |
| CTCAGACACCTTTACCATCT+TGG | 0.338125 | 8_4:-54038273 | None:intergenic |
| TGTTATTTGATTTGATTTAA+GGG | 0.347369 | 8_4:-54035967 | None:intergenic |
| GAGCCACCATCAGAAATTTC+AGG | 0.354687 | 8_4:-54037942 | None:intergenic |
| ACTCAATTGCAGCCTCTCTA+AGG | 0.372771 | 8_4:-54037685 | None:intergenic |
| CAATTCCGATTGAAGCTTGC+CGG | 0.387284 | 8_4:+54036067 | Msa1333790:five_prime_UTR |
| TCAACTTTACTGTTTCAATC+TGG | 0.387747 | 8_4:+54038619 | Msa1333790:three_prime_UTR |
| TTAATTTAGGACTGTCACTA+TGG | 0.390979 | 8_4:+54037420 | Msa1333790:intron |
| TTATCTTCTCCCAGTCCAAT+TGG | 0.406365 | 8_4:-54037709 | None:intergenic |
| ACTAGTCTTGCACTTCTTCT+CGG | 0.408587 | 8_4:-54038083 | None:intergenic |
| CGGCAAGCTTCAATCGGAAT+TGG | 0.410141 | 8_4:-54036066 | None:intergenic |
| GAAGGAGAAGGAGAAAGAAA+AGG | 0.425977 | 8_4:+54038548 | Msa1333790:CDS |
| GCAACAGCTAAAGGCTTTGC+TGG | 0.426278 | 8_4:+54038452 | Msa1333790:intron |
| TTCAGCCATCTCAATATACT+TGG | 0.438766 | 8_4:-54037862 | None:intergenic |
| GGCTGCAATTGAGTTCCAAT+TGG | 0.440475 | 8_4:+54037694 | Msa1333790:CDS |
| CTACTGCTATGGATCCAATT+AGG | 0.440681 | 8_4:+54037485 | Msa1333790:CDS |
| CCAGTTCCCTTAGCTCCCTT+AGG | 0.443209 | 8_4:-54038137 | None:intergenic |
| CTGCATTGTCTGCAGTGTCC+TGG | 0.451229 | 8_4:-54037525 | None:intergenic |
| CCTAAGGGAGCTAAGGGAAC+TGG | 0.452525 | 8_4:+54038137 | Msa1333790:CDS |
| AAAGAGAACTCAGACTCAGC+TGG | 0.468170 | 8_4:-54035919 | None:intergenic |
| TGATCCTTTCACTCAAGAGC+TGG | 0.469300 | 8_4:+54037655 | Msa1333790:CDS |
| CAATTGAGTTCCAATTGGAC+TGG | 0.475135 | 8_4:+54037699 | Msa1333790:CDS |
| AATGACACCTGAGATGCTTA+AGG | 0.475276 | 8_4:+54037766 | Msa1333790:CDS |
| TCTACGAATATGAATGTTGA+AGG | 0.476392 | 8_4:-54036163 | None:intergenic |
| CAGTAGTTCTGGGTATTCTC+TGG | 0.479823 | 8_4:-54037468 | None:intergenic |
| AGAAAAGGAAAAGTAGCAGC+AGG | 0.496648 | 8_4:+54038563 | Msa1333790:exon |
| CAGCTAAAGGCTTTGCTGGA+TGG | 0.497414 | 8_4:+54038456 | Msa1333790:intron |
| TGTCATTCCTAAGGGAGCTA+AGG | 0.498138 | 8_4:+54038130 | Msa1333790:CDS |
| AATTCCACTTCCCTTCTTGG+AGG | 0.503668 | 8_4:-54038108 | None:intergenic |
| CTATCTCCAACAAAGAAGTC+AGG | 0.503929 | 8_4:-54038305 | None:intergenic |
| GTCTCCTCCAAGAAGGGAAG+TGG | 0.505425 | 8_4:+54038047 | Msa1333790:CDS |
| TTTAGGACTGTCACTATGGA+GGG | 0.506859 | 8_4:+54037424 | Msa1333790:intron |
| GCCAGTGAAGTCACATGTCC+AGG | 0.508533 | 8_4:+54037507 | Msa1333790:CDS |
| AAGTGGAATTGTCATTCCTA+AGG | 0.512679 | 8_4:+54038121 | Msa1333790:CDS |
| ACTATGGAGGGAAAACGCAC+TGG | 0.516129 | 8_4:+54037436 | Msa1333790:exon |
| AACTCCACTTCCCTTCTTGG+AGG | 0.521516 | 8_4:-54038051 | None:intergenic |
| AGTAAGACTCGGACAGATGA+TGG | 0.523165 | 8_4:+54037993 | Msa1333790:CDS |
| TCCTGGAATTACTAGAAAAG+AGG | 0.524734 | 8_4:+54037914 | Msa1333790:CDS |
| AGAGAAGAAGGAGAAGGAGA+AGG | 0.525181 | 8_4:+54038536 | Msa1333790:CDS |
| TGGCACCGGCAAGCTTCAAT+CGG | 0.525511 | 8_4:-54036072 | None:intergenic |
| AGCTCCAGCTCTTGAGTGAA+AGG | 0.526439 | 8_4:-54037659 | None:intergenic |
| CTTTCTCTCATCGCTCTCAA+CGG | 0.528933 | 8_4:+54036198 | Msa1333790:five_prime_UTR |
| GTCATTCCTAAGGGAGCTAA+GGG | 0.530850 | 8_4:+54038131 | Msa1333790:CDS |
| GGATCCATAGCAGTAGTTCT+GGG | 0.531793 | 8_4:-54037478 | None:intergenic |
| GTTTCCTCCAAGAAGGGAAG+TGG | 0.532451 | 8_4:+54038104 | Msa1333790:CDS |
| TTTACAAGAGAAGAAGGAGA+AGG | 0.541855 | 8_4:+54038530 | Msa1333790:CDS |
| CTGGATGGTAACAAACTGAT+GGG | 0.543990 | 8_4:+54038471 | Msa1333790:CDS |
| AATTGAGTTCCAATTGGACT+GGG | 0.547012 | 8_4:+54037700 | Msa1333790:CDS |
| GTTATTAGAATTATTCCTAG+TGG | 0.550262 | 8_4:-54038330 | None:intergenic |
| TGTTACAGATGTTGATGAGC+TGG | 0.551297 | 8_4:-54036092 | None:intergenic |
| TATATATGTAAGTAACTACT+TGG | 0.552644 | 8_4:-54036122 | None:intergenic |
| AATACCCAGAACTACTGCTA+TGG | 0.553585 | 8_4:+54037474 | Msa1333790:CDS |
| AAGACTAGTTTCCTCCAAGA+AGG | 0.555321 | 8_4:+54038097 | Msa1333790:CDS |
| TCCTGGACATGTGACTTCAC+TGG | 0.556285 | 8_4:-54037508 | None:intergenic |
| AAGACTAGTCTCCTCCAAGA+AGG | 0.566971 | 8_4:+54038040 | Msa1333790:CDS |
| GCTGGATGGTAACAAACTGA+TGG | 0.570365 | 8_4:+54038470 | Msa1333790:CDS |
| AGATGTTGATGAGCTGGCAC+CGG | 0.571765 | 8_4:-54036086 | None:intergenic |
| ATTTAGGACTGTCACTATGG+AGG | 0.573114 | 8_4:+54037423 | Msa1333790:intron |
| CTATGGAGGGAAAACGCACT+GGG | 0.587219 | 8_4:+54037437 | Msa1333790:exon |
| AAGAGAACTCAGACTCAGCT+GGG | 0.590099 | 8_4:-54035918 | None:intergenic |
| AATATGAATGTTGAAGGAGA+GGG | 0.595497 | 8_4:-54036157 | None:intergenic |
| GCACCTGAAATTTCTGATGG+TGG | 0.596081 | 8_4:+54037939 | Msa1333790:CDS |
| CAGGACACTGCAGACAATGC+AGG | 0.598841 | 8_4:+54037526 | Msa1333790:CDS |
| AGACTAGTCTCCTCCAAGAA+GGG | 0.599363 | 8_4:+54038041 | Msa1333790:CDS |
| AAATAAACCTGAAGATGAGG+AGG | 0.600134 | 8_4:+54037607 | Msa1333790:intron |
| GAATATGAATGTTGAAGGAG+AGG | 0.600142 | 8_4:-54036158 | None:intergenic |
| AAGGAAAAGTAGCAGCAGGA+AGG | 0.607126 | 8_4:+54038567 | Msa1333790:exon |
| ACAGGCCAAGTATATTGAGA+TGG | 0.609715 | 8_4:+54037857 | Msa1333790:intron |
| GCTGGAGCTGCACCTTAGAG+AGG | 0.617395 | 8_4:+54037673 | Msa1333790:CDS |
| AGTGGAATTGTCATTCCTAA+GGG | 0.624122 | 8_4:+54038122 | Msa1333790:CDS |
| AGACTAGTTTCCTCCAAGAA+GGG | 0.626970 | 8_4:+54038098 | Msa1333790:CDS |
| TCAAAATGAATAATACTACA+AGG | 0.628367 | 8_4:+54036043 | Msa1333790:five_prime_UTR |
| TTGTTGGAGATAGCTCCACT+AGG | 0.636458 | 8_4:+54038315 | Msa1333790:CDS |
| ATATACATGCTATTAAGCGT+AGG | 0.640969 | 8_4:+54038233 | Msa1333790:CDS |
| GTGACTCAAGCAGTAAGACT+CGG | 0.647491 | 8_4:+54037982 | Msa1333790:CDS |
| TGGATGGTAACAAACTGATG+GGG | 0.665765 | 8_4:+54038472 | Msa1333790:CDS |
| AAGGGAACTGGAGACAACAA+AGG | 0.668017 | 8_4:+54038149 | Msa1333790:CDS |
| GATGCACCTGAAATTTCTGA+TGG | 0.673308 | 8_4:+54037936 | Msa1333790:CDS |
| GGATGGTAACAAACTGATGG+GGG | 0.675199 | 8_4:+54038473 | Msa1333790:CDS |
| TTTGGTAAAACTGATGTGTG+TGG | 0.689711 | 8_4:+54038675 | Msa1333790:three_prime_UTR |
| TAACTCAGTTGATGACCCCG+TGG | 0.725768 | 8_4:+54038349 | Msa1333790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAATTAAAACAAATAAT+CGG | - | chr8_4:54036685-54036704 | None:intergenic | 10.0% |
| !! | GAAAAAACAATAAATGAAAT+TGG | - | chr8_4:54035948-54035967 | None:intergenic | 15.0% |
| !!! | TGTTATTTGATTTGATTTAA+GGG | - | chr8_4:54035970-54035989 | None:intergenic | 15.0% |
| !!! | ATGTTATTTGATTTGATTTA+AGG | - | chr8_4:54035971-54035990 | None:intergenic | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr8_4:54036990-54037009 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr8_4:54036989-54037008 | None:intergenic | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr8_4:54036990-54037009 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr8_4:54036989-54037008 | None:intergenic | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr8_4:54036990-54037009 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr8_4:54036989-54037008 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr8_4:54036989-54037008 | Msa1333790:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr8_4:54036990-54037009 | Msa1333790:intron | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr8_4:54036989-54037008 | Msa1333790:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr8_4:54036990-54037009 | Msa1333790:intron | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr8_4:54036989-54037008 | Msa1333790:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr8_4:54036990-54037009 | Msa1333790:intron | 15.0% |
| !! | GCTTATTAATCAATTAATTA+AGG | - | chr8_4:54037185-54037204 | None:intergenic | 15.0% |
| !!! | CTATGTATTTGATTTAATTT+AGG | + | chr8_4:54037407-54037426 | Msa1333790:intron | 15.0% |
| !!! | ACTTAAGTATAATTTTATAC+AGG | + | chr8_4:54037839-54037858 | Msa1333790:intron | 15.0% |
| !! | AAAAAAATGACAATTTCATA+GGG | - | chr8_4:54038388-54038407 | None:intergenic | 15.0% |
| !! | TCAAAATGAATAATACTACA+AGG | + | chr8_4:54036043-54036062 | Msa1333790:five_prime_UTR | 20.0% |
| !! | TATATATGTAAGTAACTACT+TGG | - | chr8_4:54036125-54036144 | None:intergenic | 20.0% |
| !!! | ATTTTTTCCACGTTAATTAA+TGG | + | chr8_4:54036746-54036765 | Msa1333790:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr8_4:54036794-54036813 | Msa1333790:intron | 20.0% |
| !!! | TGAAAACTTTTAAAACGTAA+GGG | - | chr8_4:54036850-54036869 | None:intergenic | 20.0% |
| !!! | TTGAAAACTTTTAAAACGTA+AGG | - | chr8_4:54036851-54036870 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr8_4:54036794-54036813 | Msa1333790:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+CGG | + | chr8_4:54036794-54036813 | Msa1333790:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr8_4:54036794-54036813 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr8_4:54036794-54036813 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr8_4:54036794-54036813 | None:intergenic | 20.0% |
| !! | TGAAAACTAAAATAAACGTA+TGG | + | chr8_4:54037080-54037099 | Msa1333790:intron | 20.0% |
| !! | GAAAACTAAAATAAACGTAT+GGG | + | chr8_4:54037081-54037100 | Msa1333790:intron | 20.0% |
| !! | TTGAAACTTTCAAAACATAA+GGG | + | chr8_4:54037110-54037129 | Msa1333790:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr8_4:54036794-54036813 | None:intergenic | 20.0% |
| !! | AAAAAATCAATCAATTAACG+TGG | - | chr8_4:54037250-54037269 | None:intergenic | 20.0% |
| !!! | AACTTTTAGTCTCTTAAATT+AGG | + | chr8_4:54037329-54037348 | Msa1333790:intron | 20.0% |
| !!! | TTATTTCTTAAGTTAATAGC+AGG | - | chr8_4:54037593-54037612 | None:intergenic | 20.0% |
| !! | ACAACATTATCTATTCATTA+AGG | - | chr8_4:54037809-54037828 | None:intergenic | 20.0% |
| !! | GAAAAAAATGACAATTTCAT+AGG | - | chr8_4:54038389-54038408 | None:intergenic | 20.0% |
| !! | CTTCTTGTTAAAATTTGATA+TGG | + | chr8_4:54038408-54038427 | Msa1333790:intron | 20.0% |
| !!! | GTTATAATCTCTTTTATTTG+AGG | + | chr8_4:54038731-54038750 | Msa1333790:three_prime_UTR | 20.0% |
| ! | GATGATTAATGTTATCGTAA+AGG | - | chr8_4:54036331-54036350 | None:intergenic | 25.0% |
| ! | AATTAAGCCATTAATTAACG+TGG | - | chr8_4:54036756-54036775 | None:intergenic | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | - | chr8_4:54037050-54037069 | None:intergenic | 25.0% |
| !!! | CGTTTTAAAAGTTTTCAAGT+TGG | + | chr8_4:54036853-54036872 | Msa1333790:intron | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | - | chr8_4:54037050-54037069 | None:intergenic | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | + | chr8_4:54037050-54037069 | Msa1333790:intron | 25.0% |
| !!! | ATGTTTTGAAAGTTTCAAGT+TGG | - | chr8_4:54037108-54037127 | None:intergenic | 25.0% |
| ! | CTTGAAACTTTCAAAACATA+AGG | + | chr8_4:54037109-54037128 | Msa1333790:intron | 25.0% |
| ! | ATCTGTGTTTGATGTAATTT+AGG | + | chr8_4:54037291-54037310 | Msa1333790:intron | 25.0% |
| ! | GTTATTAGAATTATTCCTAG+TGG | - | chr8_4:54038333-54038352 | None:intergenic | 25.0% |
| !!! | AGGGTATTTTTTTTTTACCA+CGG | - | chr8_4:54038369-54038388 | None:intergenic | 25.0% |
| !! | TGAAATTTTACAAGAGAAGA+AGG | + | chr8_4:54038524-54038543 | Msa1333790:CDS | 25.0% |
| AATATGAATGTTGAAGGAGA+GGG | - | chr8_4:54036160-54036179 | None:intergenic | 30.0% | |
| TCTACGAATATGAATGTTGA+AGG | - | chr8_4:54036166-54036185 | None:intergenic | 30.0% | |
| AAGGATTCATGAAAACGAAA+AGG | - | chr8_4:54036278-54036297 | None:intergenic | 30.0% | |
| !!! | TCAGGTTTTAGGCATTTTTA+CGG | + | chr8_4:54036404-54036423 | Msa1333790:intron | 30.0% |
| ! | ATTTTTCACAAGTGTTCTTG+TGG | + | chr8_4:54036702-54036721 | Msa1333790:intron | 30.0% |
| TAATGGCTTAATTGCATGTT+TGG | + | chr8_4:54036763-54036782 | Msa1333790:intron | 30.0% | |
| CTTGAAACTTTCAAAACGTA+AGG | - | chr8_4:54037049-54037068 | None:intergenic | 30.0% | |
| !!! | ACGTTTTGAAAGTTTCAAGT+TGG | + | chr8_4:54036823-54036842 | Msa1333790:intron | 30.0% |
| CTTGAAACTTTCAAAACGTA+AGG | - | chr8_4:54037049-54037068 | None:intergenic | 30.0% | |
| !!! | ACGTTTTGAAAGTTTCAAGT+TGG | + | chr8_4:54036823-54036842 | Msa1333790:intron | 30.0% |
| !!! | ACGTTTTGAAAGTTTCAAGT+TGG | - | chr8_4:54036823-54036842 | None:intergenic | 30.0% |
| CTTGAAACTTTCAAAACGTA+AGG | + | chr8_4:54037049-54037068 | Msa1333790:intron | 30.0% | |
| TTAAGGCTTAATTGCATGTT+TGG | - | chr8_4:54037168-54037187 | None:intergenic | 30.0% | |
| CAGATTATACTCAAGGATTA+TGG | - | chr8_4:54037276-54037295 | None:intergenic | 30.0% | |
| TCAAACACAGATTATACTCA+AGG | - | chr8_4:54037283-54037302 | None:intergenic | 30.0% | |
| ! | GTAATTTAGGACTGTCAATA+TGG | + | chr8_4:54037304-54037323 | Msa1333790:intron | 30.0% |
| ! | TTAATTTAGGACTGTCACTA+TGG | + | chr8_4:54037420-54037439 | Msa1333790:intron | 30.0% |
| AAGAAATAAACCTGAAGATG+AGG | + | chr8_4:54037604-54037623 | Msa1333790:intron | 30.0% | |
| ! | TATTTTACCTTAAGCATCTC+AGG | - | chr8_4:54037776-54037795 | None:intergenic | 30.0% |
| TTACATTCACTCACTTGTTT+GGG | + | chr8_4:54038177-54038196 | Msa1333790:CDS | 30.0% | |
| ATATACATGCTATTAAGCGT+AGG | + | chr8_4:54038233-54038252 | Msa1333790:CDS | 30.0% | |
| ! | TTTACCATCTTGGCATTTTT+GGG | - | chr8_4:54038266-54038285 | None:intergenic | 30.0% |
| !!! | GGTATTTTTTTTTTACCACG+GGG | - | chr8_4:54038367-54038386 | None:intergenic | 30.0% |
| !!! | GGGTATTTTTTTTTTACCAC+GGG | - | chr8_4:54038368-54038387 | None:intergenic | 30.0% |
| !!! | TTTTTTGTTGCAACAGCTAA+AGG | + | chr8_4:54038443-54038462 | Msa1333790:intron | 30.0% |
| TCAACTTTACTGTTTCAATC+TGG | + | chr8_4:54038619-54038638 | Msa1333790:three_prime_UTR | 30.0% | |
| ! | CAAACTCTTCGTGATAATTT+TGG | + | chr8_4:54038657-54038676 | Msa1333790:three_prime_UTR | 30.0% |
| GAATATGAATGTTGAAGGAG+AGG | - | chr8_4:54036161-54036180 | None:intergenic | 35.0% | |
| ! | TCTCAACGTTTTCATCTTTC+AGG | + | chr8_4:54036230-54036249 | Msa1333790:five_prime_UTR | 35.0% |
| CATCAACAACAACAACAACA+AGG | - | chr8_4:54036297-54036316 | None:intergenic | 35.0% | |
| ATCTTTCTTCGTTCGATTTC+AGG | + | chr8_4:54036386-54036405 | Msa1333790:intron | 35.0% | |
| !!! | TTCGTTCGATTTCAGGTTTT+AGG | + | chr8_4:54036393-54036412 | Msa1333790:intron | 35.0% |
| TGAAGATTCATCAGTGAACA+AGG | - | chr8_4:54036476-54036495 | None:intergenic | 35.0% | |
| AAATAAACCTGAAGATGAGG+AGG | + | chr8_4:54037607-54037626 | Msa1333790:intron | 35.0% | |
| AATTGAGTTCCAATTGGACT+GGG | + | chr8_4:54037700-54037719 | Msa1333790:CDS | 35.0% | |
| TTCAGCCATCTCAATATACT+TGG | - | chr8_4:54037865-54037884 | None:intergenic | 35.0% | |
| TCCTGGAATTACTAGAAAAG+AGG | + | chr8_4:54037914-54037933 | Msa1333790:CDS | 35.0% | |
| !! | TCCTCTTTTCTAGTAATTCC+AGG | - | chr8_4:54037918-54037937 | None:intergenic | 35.0% |
| AAGTGGAATTGTCATTCCTA+AGG | + | chr8_4:54038121-54038140 | Msa1333790:CDS | 35.0% | |
| AGTGGAATTGTCATTCCTAA+GGG | + | chr8_4:54038122-54038141 | Msa1333790:CDS | 35.0% | |
| CTTACATTCACTCACTTGTT+TGG | + | chr8_4:54038176-54038195 | Msa1333790:CDS | 35.0% | |
| ! | CTTTACCATCTTGGCATTTT+TGG | - | chr8_4:54038267-54038286 | None:intergenic | 35.0% |
| CAAAAATGCCAAGATGGTAA+AGG | + | chr8_4:54038265-54038284 | Msa1333790:CDS | 35.0% | |
| AATAAGCCTGACTTCTTTGT+TGG | + | chr8_4:54038299-54038318 | Msa1333790:CDS | 35.0% | |
| TTTACAAGAGAAGAAGGAGA+AGG | + | chr8_4:54038530-54038549 | Msa1333790:CDS | 35.0% | |
| TTTGGTAAAACTGATGTGTG+TGG | + | chr8_4:54038675-54038694 | Msa1333790:three_prime_UTR | 35.0% | |
| ! | TGTTACAGATGTTGATGAGC+TGG | - | chr8_4:54036095-54036114 | None:intergenic | 40.0% |
| ATCTTCATTCGTTCCGTTTC+AGG | + | chr8_4:54036489-54036508 | Msa1333790:intron | 40.0% | |
| !! | GTTTTAGCGGCACATCTTTT+CGG | + | chr8_4:54036511-54036530 | Msa1333790:five_prime_UTR | 40.0% |
| TCAAGTCGGTCCAAAACATA+AGG | + | chr8_4:54036958-54036977 | Msa1333790:intron | 40.0% | |
| CAAGTCGGTCCAAAACATAA+GGG | + | chr8_4:54036959-54036978 | Msa1333790:intron | 40.0% | |
| !!! | CAAGTTGGTCCCTTATGTTT+TGG | - | chr8_4:54036897-54036916 | None:intergenic | 40.0% |
| ! | ATTTAGGACTGTCACTATGG+AGG | + | chr8_4:54037423-54037442 | Msa1333790:intron | 40.0% |
| ! | TTTAGGACTGTCACTATGGA+GGG | + | chr8_4:54037424-54037443 | Msa1333790:intron | 40.0% |
| AATACCCAGAACTACTGCTA+TGG | + | chr8_4:54037474-54037493 | Msa1333790:CDS | 40.0% | |
| CTACTGCTATGGATCCAATT+AGG | + | chr8_4:54037485-54037504 | Msa1333790:CDS | 40.0% | |
| CAATTGAGTTCCAATTGGAC+TGG | + | chr8_4:54037699-54037718 | Msa1333790:CDS | 40.0% | |
| TTATCTTCTCCCAGTCCAAT+TGG | - | chr8_4:54037712-54037731 | None:intergenic | 40.0% | |
| AATGACACCTGAGATGCTTA+AGG | + | chr8_4:54037766-54037785 | Msa1333790:CDS | 40.0% | |
| ACAGGCCAAGTATATTGAGA+TGG | + | chr8_4:54037857-54037876 | Msa1333790:intron | 40.0% | |
| GACAAAAAGCAGTCAAATCC+TGG | + | chr8_4:54037897-54037916 | Msa1333790:CDS | 40.0% | |
| GATGCACCTGAAATTTCTGA+TGG | + | chr8_4:54037936-54037955 | Msa1333790:CDS | 40.0% | |
| !! | ACTAGTCTTGCACTTCTTCT+CGG | - | chr8_4:54038029-54038048 | None:intergenic | 40.0% |
| !! | AAGACTAGTTTCCTCCAAGA+AGG | + | chr8_4:54038097-54038116 | Msa1333790:CDS | 40.0% |
| !! | AGACTAGTTTCCTCCAAGAA+GGG | + | chr8_4:54038098-54038117 | Msa1333790:CDS | 40.0% |
| GAATCCCAAAAATGCCAAGA+TGG | + | chr8_4:54038259-54038278 | Msa1333790:CDS | 40.0% | |
| CTATCTCCAACAAAGAAGTC+AGG | - | chr8_4:54038308-54038327 | None:intergenic | 40.0% | |
| CTGGATGGTAACAAACTGAT+GGG | + | chr8_4:54038471-54038490 | Msa1333790:CDS | 40.0% | |
| TGGATGGTAACAAACTGATG+GGG | + | chr8_4:54038472-54038491 | Msa1333790:CDS | 40.0% | |
| GAAGGAGAAGGAGAAAGAAA+AGG | + | chr8_4:54038548-54038567 | Msa1333790:CDS | 40.0% | |
| AGAAAAGGAAAAGTAGCAGC+AGG | + | chr8_4:54038563-54038582 | Msa1333790:exon | 40.0% | |
| AAGAGAACTCAGACTCAGCT+GGG | - | chr8_4:54035921-54035940 | None:intergenic | 45.0% | |
| AAAGAGAACTCAGACTCAGC+TGG | - | chr8_4:54035922-54035941 | None:intergenic | 45.0% | |
| CAATTCCGATTGAAGCTTGC+CGG | + | chr8_4:54036067-54036086 | Msa1333790:five_prime_UTR | 45.0% | |
| CTTTCTCTCATCGCTCTCAA+CGG | + | chr8_4:54036198-54036217 | Msa1333790:five_prime_UTR | 45.0% | |
| !!! | CGTTCCGTTTCAGGTTTTAG+CGG | + | chr8_4:54036498-54036517 | Msa1333790:intron | 45.0% |
| ! | TGTGCCGCTAAAACCTGAAA+CGG | - | chr8_4:54036505-54036524 | None:intergenic | 45.0% |
| TGAGAAGAAGAAGAGCGATG+AGG | - | chr8_4:54036544-54036563 | None:intergenic | 45.0% | |
| !! | CAGTAGTTCTGGGTATTCTC+TGG | - | chr8_4:54037471-54037490 | None:intergenic | 45.0% |
| GGATCCATAGCAGTAGTTCT+GGG | - | chr8_4:54037481-54037500 | None:intergenic | 45.0% | |
| TGGATCCATAGCAGTAGTTC+TGG | - | chr8_4:54037482-54037501 | None:intergenic | 45.0% | |
| ! | TGTGACTTCACTGGCCTAAT+TGG | - | chr8_4:54037502-54037521 | None:intergenic | 45.0% |
| TGATCCTTTCACTCAAGAGC+TGG | + | chr8_4:54037655-54037674 | Msa1333790:CDS | 45.0% | |
| ACTCAATTGCAGCCTCTCTA+AGG | - | chr8_4:54037688-54037707 | None:intergenic | 45.0% | |
| GGCTGCAATTGAGTTCCAAT+TGG | + | chr8_4:54037694-54037713 | Msa1333790:CDS | 45.0% | |
| GCACCTGAAATTTCTGATGG+TGG | + | chr8_4:54037939-54037958 | Msa1333790:CDS | 45.0% | |
| GAGCCACCATCAGAAATTTC+AGG | - | chr8_4:54037945-54037964 | None:intergenic | 45.0% | |
| GTGACTCAAGCAGTAAGACT+CGG | + | chr8_4:54037982-54038001 | Msa1333790:CDS | 45.0% | |
| AGTAAGACTCGGACAGATGA+TGG | + | chr8_4:54037993-54038012 | Msa1333790:CDS | 45.0% | |
| !! | AAGACTAGTCTCCTCCAAGA+AGG | + | chr8_4:54038040-54038059 | Msa1333790:CDS | 45.0% |
| !! | AGACTAGTCTCCTCCAAGAA+GGG | + | chr8_4:54038041-54038060 | Msa1333790:CDS | 45.0% |
| AATTCCACTTCCCTTCTTGG+AGG | - | chr8_4:54038111-54038130 | None:intergenic | 45.0% | |
| GACAATTCCACTTCCCTTCT+TGG | - | chr8_4:54038114-54038133 | None:intergenic | 45.0% | |
| TGTCATTCCTAAGGGAGCTA+AGG | + | chr8_4:54038130-54038149 | Msa1333790:CDS | 45.0% | |
| GTCATTCCTAAGGGAGCTAA+GGG | + | chr8_4:54038131-54038150 | Msa1333790:CDS | 45.0% | |
| AAGGGAACTGGAGACAACAA+AGG | + | chr8_4:54038149-54038168 | Msa1333790:CDS | 45.0% | |
| CTCAGACACCTTTACCATCT+TGG | - | chr8_4:54038276-54038295 | None:intergenic | 45.0% | |
| TTGTTGGAGATAGCTCCACT+AGG | + | chr8_4:54038315-54038334 | Msa1333790:CDS | 45.0% | |
| GCTGGATGGTAACAAACTGA+TGG | + | chr8_4:54038470-54038489 | Msa1333790:CDS | 45.0% | |
| GGATGGTAACAAACTGATGG+GGG | + | chr8_4:54038473-54038492 | Msa1333790:CDS | 45.0% | |
| AGAGAAGAAGGAGAAGGAGA+AGG | + | chr8_4:54038536-54038555 | Msa1333790:CDS | 45.0% | |
| AAGGAAAAGTAGCAGCAGGA+AGG | + | chr8_4:54038567-54038586 | Msa1333790:exon | 45.0% | |
| CGGCAAGCTTCAATCGGAAT+TGG | - | chr8_4:54036069-54036088 | None:intergenic | 50.0% | |
| ! | AGATGTTGATGAGCTGGCAC+CGG | - | chr8_4:54036089-54036108 | None:intergenic | 50.0% |
| ACTATGGAGGGAAAACGCAC+TGG | + | chr8_4:54037436-54037455 | Msa1333790:exon | 50.0% | |
| CTATGGAGGGAAAACGCACT+GGG | + | chr8_4:54037437-54037456 | Msa1333790:exon | 50.0% | |
| TCCTGGACATGTGACTTCAC+TGG | - | chr8_4:54037511-54037530 | None:intergenic | 50.0% | |
| AGCTCCAGCTCTTGAGTGAA+AGG | - | chr8_4:54037662-54037681 | None:intergenic | 50.0% | |
| AACTCCACTTCCCTTCTTGG+AGG | - | chr8_4:54038054-54038073 | None:intergenic | 50.0% | |
| GACAACTCCACTTCCCTTCT+TGG | - | chr8_4:54038057-54038076 | None:intergenic | 50.0% | |
| GTTTCCTCCAAGAAGGGAAG+TGG | + | chr8_4:54038104-54038123 | Msa1333790:CDS | 50.0% | |
| !! | TAACTCAGTTGATGACCCCG+TGG | + | chr8_4:54038349-54038368 | Msa1333790:CDS | 50.0% |
| GCAACAGCTAAAGGCTTTGC+TGG | + | chr8_4:54038452-54038471 | Msa1333790:intron | 50.0% | |
| CAGCTAAAGGCTTTGCTGGA+TGG | + | chr8_4:54038456-54038475 | Msa1333790:intron | 50.0% | |
| !! | TGGCACCGGCAAGCTTCAAT+CGG | - | chr8_4:54036075-54036094 | None:intergenic | 55.0% |
| GCCAGTGAAGTCACATGTCC+AGG | + | chr8_4:54037507-54037526 | Msa1333790:CDS | 55.0% | |
| CTGCATTGTCTGCAGTGTCC+TGG | - | chr8_4:54037528-54037547 | None:intergenic | 55.0% | |
| CAGGACACTGCAGACAATGC+AGG | + | chr8_4:54037526-54037545 | Msa1333790:CDS | 55.0% | |
| GTCTCCTCCAAGAAGGGAAG+TGG | + | chr8_4:54038047-54038066 | Msa1333790:CDS | 55.0% | |
| CCAGTTCCCTTAGCTCCCTT+AGG | - | chr8_4:54038140-54038159 | None:intergenic | 55.0% | |
| CCTAAGGGAGCTAAGGGAAC+TGG | + | chr8_4:54038137-54038156 | Msa1333790:CDS | 55.0% | |
| CGCAGCTCCTCCTCATCTTC+AGG | - | chr8_4:54037617-54037636 | None:intergenic | 60.0% | |
| GCTGGAGCTGCACCTTAGAG+AGG | + | chr8_4:54037673-54037692 | Msa1333790:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 54035903 | 54038770 | 54035903 | ID=Msa1333790;Name=Msa1333790 |
| chr8_4 | mRNA | 54035903 | 54038770 | 54035903 | ID=Msa1333790-mRNA-1;Parent=Msa1333790;Name=Msa1333790-mRNA-1;_AED=0.03;_eAED=0.03;_QI=399|1|0.85|1|0.5|0.71|7|192|301 |
| chr8_4 | exon | 54035903 | 54036251 | 54035903 | ID=Msa1333790-mRNA-1:exon:16737;Parent=Msa1333790-mRNA-1 |
| chr8_4 | exon | 54036408 | 54036425 | 54036408 | ID=Msa1333790-mRNA-1:exon:16738;Parent=Msa1333790-mRNA-1 |
| chr8_4 | exon | 54036511 | 54036532 | 54036511 | ID=Msa1333790-mRNA-1:exon:16739;Parent=Msa1333790-mRNA-1 |
| chr8_4 | exon | 54037429 | 54037547 | 54037429 | ID=Msa1333790-mRNA-1:exon:16740;Parent=Msa1333790-mRNA-1 |
| chr8_4 | exon | 54037621 | 54037787 | 54037621 | ID=Msa1333790-mRNA-1:exon:16741;Parent=Msa1333790-mRNA-1 |
| chr8_4 | exon | 54037861 | 54038370 | 54037861 | ID=Msa1333790-mRNA-1:exon:16742;Parent=Msa1333790-mRNA-1 |
| chr8_4 | exon | 54038459 | 54038770 | 54038459 | ID=Msa1333790-mRNA-1:exon:16743;Parent=Msa1333790-mRNA-1 |
| chr8_4 | five_prime_UTR | 54035903 | 54036251 | 54035903 | ID=Msa1333790-mRNA-1:five_prime_utr;Parent=Msa1333790-mRNA-1 |
| chr8_4 | five_prime_UTR | 54036408 | 54036425 | 54036408 | ID=Msa1333790-mRNA-1:five_prime_utr;Parent=Msa1333790-mRNA-1 |
| chr8_4 | five_prime_UTR | 54036511 | 54036532 | 54036511 | ID=Msa1333790-mRNA-1:five_prime_utr;Parent=Msa1333790-mRNA-1 |
| chr8_4 | five_prime_UTR | 54037429 | 54037438 | 54037429 | ID=Msa1333790-mRNA-1:five_prime_utr;Parent=Msa1333790-mRNA-1 |
| chr8_4 | CDS | 54037439 | 54037547 | 54037439 | ID=Msa1333790-mRNA-1:cds;Parent=Msa1333790-mRNA-1 |
| chr8_4 | CDS | 54037621 | 54037787 | 54037621 | ID=Msa1333790-mRNA-1:cds;Parent=Msa1333790-mRNA-1 |
| chr8_4 | CDS | 54037861 | 54038370 | 54037861 | ID=Msa1333790-mRNA-1:cds;Parent=Msa1333790-mRNA-1 |
| chr8_4 | CDS | 54038459 | 54038578 | 54038459 | ID=Msa1333790-mRNA-1:cds;Parent=Msa1333790-mRNA-1 |
| chr8_4 | three_prime_UTR | 54038579 | 54038770 | 54038579 | ID=Msa1333790-mRNA-1:three_prime_utr;Parent=Msa1333790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
