AlfalfaGEDB | Msa1334800

M. sativa cultivar zhongmu-4 / Msa1334800

KEGG: -
GO: GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905393 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141
PFAM: PF03634.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1334800	XP_013458053.1	95.902	366	11	4	14	376	1	365	0.0	708

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1334800	sp\|Q8LN68\|TB1_ORYSJ	41.401	157	75	2	143	282	115	271	1.03e-25	110

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1334800	A0A072UQH4	95.902	366	11	4	14	376	1	365	0.0	708

TFs/TRs:

Gene ID	Type	Classification
Msa1334800	TF	TCP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1260950	Msa1334800	0.923177	3.744789e-89	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1334800	MtrunA17_Chr4g0062691	95.902	366	11	4	14	376	1	365	0.0	708
Msa1334800	MtrunA17_Chr6g0456881	40.588	170	86	3	122	278	105	272	5.66e-28	114
Msa1334800	MtrunA17_Chr7g0220931	64.516	62	22	0	145	206	122	183	1.62e-20	92.0
Msa1334800	MtrunA17_Chr1g0205131	55.696	79	33	1	131	207	95	173	8.58e-20	90.5
Msa1334800	MtrunA17_Chr8g0376571	35.329	167	83	6	139	280	57	223	3.84e-17	83.2
Msa1334800	MtrunA17_Chr8g0360441	44.898	98	52	2	121	217	31	127	3.28e-16	79.7
Msa1334800	MtrunA17_Chr7g0219461	31.356	236	124	9	144	370	58	264	1.19e-15	77.8
Msa1334800	MtrunA17_Chr2g0316391	47.436	78	40	1	125	202	3	79	2.05e-14	73.2
Msa1334800	MtrunA17_Chr6g0454781	56.897	58	25	0	144	201	50	107	3.03e-14	73.2
Msa1334800	MtrunA17_Chr4g0040921	48.438	64	33	0	139	202	18	81	4.98e-14	72.8
Msa1334800	MtrunA17_Chr3g0086961	32.394	142	88	2	144	280	58	196	1.00e-13	72.0
Msa1334800	MtrunA17_Chr2g0325171	47.619	63	33	0	139	201	20	82	1.27e-13	71.2
Msa1334800	MtrunA17_Chr4g0061561	48.276	58	30	0	144	201	58	115	8.16e-12	65.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1334800	AT3G18550.3	31.148	305	161	9	13	275	4	301	2.59e-24	104
Msa1334800	AT3G18550.1	31.148	305	161	9	13	275	4	301	2.96e-24	103
Msa1334800	AT3G18550.4	31.148	305	161	9	13	275	4	301	2.96e-24	103
Msa1334800	AT3G18550.2	35.885	209	110	5	13	202	4	207	6.73e-24	102
Msa1334800	AT1G67260.2	51.546	97	39	1	120	208	56	152	2.78e-23	100
Msa1334800	AT1G67260.3	51.546	97	39	1	120	208	56	152	2.78e-23	100
Msa1334800	AT1G67260.1	51.546	97	39	1	120	208	56	152	3.27e-23	100
Msa1334800	AT1G68800.2	63.768	69	24	1	134	201	102	170	7.02e-22	96.3
Msa1334800	AT1G68800.1	63.768	69	24	1	134	201	102	170	7.71e-22	96.3
Msa1334800	AT4G18390.1	35.519	183	78	6	139	305	38	196	3.22e-19	88.6
Msa1334800	AT4G18390.2	35.519	183	78	6	139	305	38	196	3.22e-19	88.6
Msa1334800	AT3G15030.2	43.878	98	54	1	106	202	7	104	2.40e-16	80.5
Msa1334800	AT3G15030.4	43.878	98	54	1	106	202	7	104	2.40e-16	80.5
Msa1334800	AT3G15030.3	43.878	98	54	1	106	202	7	104	2.40e-16	80.5
Msa1334800	AT3G15030.1	43.878	98	54	1	106	202	7	104	2.40e-16	80.5
Msa1334800	AT1G53230.1	48.148	81	41	1	124	203	29	109	4.67e-15	76.6
Msa1334800	AT1G53230.2	48.148	81	41	1	124	203	29	109	4.67e-15	76.6
Msa1334800	AT1G30210.2	36.879	141	65	3	139	279	46	162	1.12e-14	74.7
Msa1334800	AT1G30210.1	36.879	141	65	3	139	279	46	162	1.12e-14	74.7
Msa1334800	AT2G31070.1	43.750	80	44	1	123	201	8	87	3.34e-13	70.9
Msa1334800	AT3G02150.1	51.724	58	28	0	144	201	75	132	1.09e-12	68.2
Msa1334800	AT3G02150.2	51.724	58	28	0	144	201	75	132	2.22e-12	68.2
Msa1334800	AT5G60970.1	48.276	58	30	0	144	201	64	121	7.64e-12	66.6

Find 76 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCAATATCATCAGGATAATT+AGG	0.171473	8_4:-55448553	None:intergenic
TTATTTCTTTCCTTTCCTTT+TGG	0.203378	8_4:+55449928	Msa1334800:three_prime_UTR
GAGAAGAAATAGTACTAATA+AGG	0.277919	8_4:+55449095	Msa1334800:CDS
CTGTTTGTTGAATACATATC+TGG	0.295320	8_4:-55448394	None:intergenic
GAGAAAGGAGGAAGAGGAAA+GGG	0.310050	8_4:-55448517	None:intergenic
TCTGTTCCTGACCTTGAAAT+TGG	0.315222	8_4:+55450058	Msa1334800:three_prime_UTR
TTGCTTTCAAAGGAACAAAA+AGG	0.336731	8_4:-55448457	None:intergenic
GTGAGGTATCTTCAGAATTT+CGG	0.343155	8_4:+55449962	Msa1334800:three_prime_UTR
CATGTTGTTGGAGGAAGATT+TGG	0.344830	8_4:-55448594	None:intergenic
TTTGGTCTTCAAGATATGTT+AGG	0.353164	8_4:+55448874	Msa1334800:CDS
TGAGCCTGACTGACACAAAA+AGG	0.360607	8_4:-55449878	None:intergenic
AGAAAGGAGGAAGAGGAAAG+GGG	0.382698	8_4:-55448516	None:intergenic
TGCTAGGTTATTTCCATTGA+GGG	0.401156	8_4:-55448419	None:intergenic
GTAAACTTGTACCAATTTCA+AGG	0.404054	8_4:-55450069	None:intergenic
AAAAGGAGGTAGTGATGATA+AGG	0.426628	8_4:-55449861	None:intergenic
CAATATCATCAGGATAATTA+GGG	0.427407	8_4:-55448552	None:intergenic
AGAGAAAGGAGGAAGAGGAA+AGG	0.429249	8_4:-55448518	None:intergenic
TTGCAAGGTGTTTGATCTCA+AGG	0.429585	8_4:-55448945	None:intergenic
GCTTTGATTGTTGAGTTTGA+AGG	0.434606	8_4:-55448685	None:intergenic
CTTCCTGCAGCTGCTGGTAA+AGG	0.436015	8_4:+55448721	Msa1334800:CDS
TCAAGCTTGGATAATGAAGT+TGG	0.437838	8_4:+55449033	Msa1334800:CDS
GTTGAAGATGCACTCTTAGT+AGG	0.445865	8_4:-55448988	None:intergenic
TTTCAAAGGGGTTCCAAATG+AGG	0.447560	8_4:-55449266	None:intergenic
CTTTGTTCATTATGAGCAAA+TGG	0.450640	8_4:+55449433	Msa1334800:CDS
TTGAGAGAATTGAACATCAT+AGG	0.458304	8_4:-55449462	None:intergenic
AAAGGAGGTAGTGATGATAA+GGG	0.462084	8_4:-55449860	None:intergenic
GGAAATCAACATCATGTTGT+TGG	0.463207	8_4:-55448606	None:intergenic
TCAAAACCGCGAAAGGACTA+AGG	0.463298	8_4:+55448809	Msa1334800:CDS
CTTGTACCAATTTCAAGGTC+AGG	0.464630	8_4:-55450064	None:intergenic
CAAGAGAAAGGGCAAGAGAA+AGG	0.468363	8_4:+55449160	Msa1334800:CDS
CTGTTGTTATTCATCACAAC+AGG	0.468470	8_4:-55448643	None:intergenic
GATTTGGTGGCTGTCTTGAA+AGG	0.472274	8_4:-55448578	None:intergenic
GAAAGGAGGAAGAGGAAAGG+GGG	0.475237	8_4:-55448515	None:intergenic
GGGAATTGAAAGAAAGAGAA+AGG	0.476940	8_4:-55448532	None:intergenic
AAGAGTGCATTCAATTCTAT+AGG	0.477613	8_4:+55449126	Msa1334800:CDS
CCGATCCCTTAGTCCTTTCG+CGG	0.487376	8_4:-55448815	None:intergenic
AATCTTCTTCCTGCAGCTGC+TGG	0.488028	8_4:+55448715	Msa1334800:CDS
GTTTGATCTCAAGGTTGGAT+TGG	0.498353	8_4:-55448936	None:intergenic
TTGGAACCCCTTTGAAAATG+TGG	0.498644	8_4:+55449272	Msa1334800:CDS
TCAACAAACAGTTCCCTCAA+TGG	0.498770	8_4:+55448406	Msa1334800:CDS
AAGAAAGAGAAAGGAGGAAG+AGG	0.499947	8_4:-55448523	None:intergenic
CAACAGGTGGATGATGAAGT+TGG	0.500835	8_4:-55448627	None:intergenic
TGAAAGGGATCAATATCATC+AGG	0.511469	8_4:-55448562	None:intergenic
GTTGTTGGAGGAAGATTTGG+TGG	0.511656	8_4:-55448591	None:intergenic
TGAACAATTTCACCAATCCA+TGG	0.514462	8_4:+55449779	Msa1334800:CDS
TCAAAGCAATACAATGAAGA+AGG	0.515193	8_4:+55449231	Msa1334800:CDS
GATGATAAGGGGTGCAAGTA+CGG	0.515892	8_4:-55449848	None:intergenic
ATGCTAGGTTATTTCCATTG+AGG	0.517513	8_4:-55448420	None:intergenic
TCACCACATAACATTCCAAA+AGG	0.520050	8_4:-55449943	None:intergenic
TACTGAAGGAGTTTCAAGCT+TGG	0.530351	8_4:+55449020	Msa1334800:CDS
TGAAGTTGAGTTGCTTTCAA+AGG	0.532484	8_4:-55448467	None:intergenic
AACAGAAACAAACAAGAAAG+TGG	0.538067	8_4:-55450041	None:intergenic
AAGGTGTTTGATCTCAAGGT+TGG	0.545535	8_4:-55448941	None:intergenic
TTGCCTTTACCAGCAGCTGC+AGG	0.547785	8_4:-55448724	None:intergenic
GAAAATGTGGAAGAATCTGC+AGG	0.550929	8_4:+55449285	Msa1334800:CDS
ATTTGGTGGCTGTCTTGAAA+GGG	0.555885	8_4:-55448577	None:intergenic
GTGATTTAGAGGAAAATGCT+AGG	0.566051	8_4:-55448435	None:intergenic
AGCAAGATCAAAACCGCGAA+AGG	0.567602	8_4:+55448802	Msa1334800:CDS
AATCAACATCATGTTGTTGG+AGG	0.575800	8_4:-55448603	None:intergenic
CAAAACCGCGAAAGGACTAA+GGG	0.576240	8_4:+55448810	Msa1334800:CDS
TCAACTTCTGAATGTACTGA+AGG	0.578330	8_4:+55449006	Msa1334800:CDS
AATCAGCTTCACATGATCAA+AGG	0.583940	8_4:-55449343	None:intergenic
AAGCAAGCAAAACAGTGGAC+TGG	0.594986	8_4:+55448905	Msa1334800:CDS
GGTACACATCAGAGTACTCA+AGG	0.596783	8_4:+55449306	Msa1334800:CDS
CCGCGAAAGGACTAAGGGAT+CGG	0.598651	8_4:+55448815	Msa1334800:CDS
TTGTTATTCATCACAACAGG+TGG	0.601473	8_4:-55448640	None:intergenic
TGTCACTTGAAGTTGCAAAG+AGG	0.614161	8_4:+55448848	Msa1334800:CDS
ACATAACATTCCAAAAGGAA+AGG	0.614793	8_4:-55449938	None:intergenic
AATTGAAAGAAAGAGAAAGG+AGG	0.616668	8_4:-55448529	None:intergenic
AGCTTCACATGATCAAAGGA+AGG	0.617475	8_4:-55449339	None:intergenic
TGGTAAAGGCAAAACTGTAG+TGG	0.630471	8_4:+55448735	Msa1334800:CDS
GGTAGCATGTTAATTAGATG+CGG	0.636554	8_4:-55449827	None:intergenic
AGAGAATTGAACATCATAGG+TGG	0.646080	8_4:-55449459	None:intergenic
AAGGAGGTAGTGATGATAAG+GGG	0.674254	8_4:-55449859	None:intergenic
TCATGTGAAGCTGATTGATG+AGG	0.717288	8_4:+55449350	Msa1334800:CDS
ACAGTACTGATCATCATCAG+CGG	0.729484	8_4:+55448662	Msa1334800:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTCTTATTGGTAAAAAACAA+TGG	+	chr8_4:55449591-55449610	Msa1334800:intron	20.0%
!!!	AATGATATTTTGACAACTTT+TGG	-	chr8_4:55449676-55449695	None:intergenic	20.0%
!!	TTCTTATTGGTAAAAAACAA+TGG	+	chr8_4:55449591-55449610	Msa1334800:intron	20.0%
!!!	AATGATATTTTGACAACTTT+TGG	-	chr8_4:55449676-55449695	None:intergenic	20.0%
!	CAATATCATCAGGATAATTA+GGG	-	chr8_4:55448555-55448574	None:intergenic	25.0%
!	TCAATATCATCAGGATAATT+AGG	-	chr8_4:55448556-55448575	None:intergenic	25.0%
!!!	ATAACAAGTTTTTGTTGTTG+TGG	-	chr8_4:55449072-55449091	None:intergenic	25.0%
!	GAGAAGAAATAGTACTAATA+AGG	+	chr8_4:55449095-55449114	Msa1334800:CDS	25.0%
!	AAGGACAAAAGAAAAAAAGA+AGG	+	chr8_4:55449179-55449198	Msa1334800:CDS	25.0%
!	GAATAAAAACTAACCTCATT+TGG	+	chr8_4:55449253-55449272	Msa1334800:CDS	25.0%
!!	AATTTGAACTTACTTGTTGA+AGG	-	chr8_4:55449491-55449510	None:intergenic	25.0%
!	TTACTCTATATGTATATGCA+TGG	-	chr8_4:55449516-55449535	None:intergenic	25.0%
!	AATAAGAAGTGAGAAAAACA+AGG	-	chr8_4:55449579-55449598	None:intergenic	25.0%
!!!	TTGTTTTTCTCACTTCTTAT+TGG	+	chr8_4:55449578-55449597	Msa1334800:intron	25.0%
!!!	TTATTTCTTTCCTTTCCTTT+TGG	+	chr8_4:55449928-55449947	Msa1334800:three_prime_UTR	25.0%
!	CAATATCATCAGGATAATTA+GGG	-	chr8_4:55448555-55448574	None:intergenic	25.0%
!	TCAATATCATCAGGATAATT+AGG	-	chr8_4:55448556-55448575	None:intergenic	25.0%
!!!	ATAACAAGTTTTTGTTGTTG+TGG	-	chr8_4:55449072-55449091	None:intergenic	25.0%
!	GAGAAGAAATAGTACTAATA+AGG	+	chr8_4:55449095-55449114	Msa1334800:CDS	25.0%
!	AAGGACAAAAGAAAAAAAGA+AGG	+	chr8_4:55449179-55449198	Msa1334800:CDS	25.0%
!	GAATAAAAACTAACCTCATT+TGG	+	chr8_4:55449253-55449272	Msa1334800:CDS	25.0%
!!	AATTTGAACTTACTTGTTGA+AGG	-	chr8_4:55449491-55449510	None:intergenic	25.0%
!	TTACTCTATATGTATATGCA+TGG	-	chr8_4:55449516-55449535	None:intergenic	25.0%
!	AATAAGAAGTGAGAAAAACA+AGG	-	chr8_4:55449579-55449598	None:intergenic	25.0%
!!!	TTGTTTTTCTCACTTCTTAT+TGG	+	chr8_4:55449578-55449597	Msa1334800:intron	25.0%
!!!	TTATTTCTTTCCTTTCCTTT+TGG	+	chr8_4:55449928-55449947	Msa1334800:three_prime_UTR	25.0%
!	CTGTTTGTTGAATACATATC+TGG	-	chr8_4:55448397-55448416	None:intergenic	30.0%
	TTGCTTTCAAAGGAACAAAA+AGG	-	chr8_4:55448460-55448479	None:intergenic	30.0%
	AATTGAAAGAAAGAGAAAGG+AGG	-	chr8_4:55448532-55448551	None:intergenic	30.0%
!	TCTTGCTAGATCTTTTTCTT+TGG	-	chr8_4:55448771-55448790	None:intergenic	30.0%
!	TTTGGTCTTCAAGATATGTT+AGG	+	chr8_4:55448874-55448893	Msa1334800:CDS	30.0%
!	TAACATTTTTCTCTCTTGCA+AGG	-	chr8_4:55448963-55448982	None:intergenic	30.0%
!	AAGAGTGCATTCAATTCTAT+AGG	+	chr8_4:55449126-55449145	Msa1334800:CDS	30.0%
	TAGAGAAAAAGCAAGAGAAA+GGG	+	chr8_4:55449149-55449168	Msa1334800:CDS	30.0%
	TCAAAGCAATACAATGAAGA+AGG	+	chr8_4:55449231-55449250	Msa1334800:CDS	30.0%
!	ATTCTTCCACATTTTCAAAG+GGG	-	chr8_4:55449281-55449300	None:intergenic	30.0%
!	GATTCTTCCACATTTTCAAA+GGG	-	chr8_4:55449282-55449301	None:intergenic	30.0%
!	AGATTCTTCCACATTTTCAA+AGG	-	chr8_4:55449283-55449302	None:intergenic	30.0%
	CTTTGTTCATTATGAGCAAA+TGG	+	chr8_4:55449433-55449452	Msa1334800:CDS	30.0%
	TTGAGAGAATTGAACATCAT+AGG	-	chr8_4:55449465-55449484	None:intergenic	30.0%
	AAAACAATGGAGAGAGAAAA+AGG	+	chr8_4:55449604-55449623	Msa1334800:intron	30.0%
	ACATAACATTCCAAAAGGAA+AGG	-	chr8_4:55449941-55449960	None:intergenic	30.0%
!!!	TTTCCTTTTGGAATGTTATG+TGG	+	chr8_4:55449940-55449959	Msa1334800:three_prime_UTR	30.0%
	AACAGAAACAAACAAGAAAG+TGG	-	chr8_4:55450044-55450063	None:intergenic	30.0%
	GTAAACTTGTACCAATTTCA+AGG	-	chr8_4:55450072-55450091	None:intergenic	30.0%
!	CTGTTTGTTGAATACATATC+TGG	-	chr8_4:55448397-55448416	None:intergenic	30.0%
	TTGCTTTCAAAGGAACAAAA+AGG	-	chr8_4:55448460-55448479	None:intergenic	30.0%
	AATTGAAAGAAAGAGAAAGG+AGG	-	chr8_4:55448532-55448551	None:intergenic	30.0%
!	TCTTGCTAGATCTTTTTCTT+TGG	-	chr8_4:55448771-55448790	None:intergenic	30.0%
!	TTTGGTCTTCAAGATATGTT+AGG	+	chr8_4:55448874-55448893	Msa1334800:CDS	30.0%
!	TAACATTTTTCTCTCTTGCA+AGG	-	chr8_4:55448963-55448982	None:intergenic	30.0%
!	AAGAGTGCATTCAATTCTAT+AGG	+	chr8_4:55449126-55449145	Msa1334800:CDS	30.0%
	TAGAGAAAAAGCAAGAGAAA+GGG	+	chr8_4:55449149-55449168	Msa1334800:CDS	30.0%
	TCAAAGCAATACAATGAAGA+AGG	+	chr8_4:55449231-55449250	Msa1334800:CDS	30.0%
!	ATTCTTCCACATTTTCAAAG+GGG	-	chr8_4:55449281-55449300	None:intergenic	30.0%
!	GATTCTTCCACATTTTCAAA+GGG	-	chr8_4:55449282-55449301	None:intergenic	30.0%
!	AGATTCTTCCACATTTTCAA+AGG	-	chr8_4:55449283-55449302	None:intergenic	30.0%
	CTTTGTTCATTATGAGCAAA+TGG	+	chr8_4:55449433-55449452	Msa1334800:CDS	30.0%
	TTGAGAGAATTGAACATCAT+AGG	-	chr8_4:55449465-55449484	None:intergenic	30.0%
	AAAACAATGGAGAGAGAAAA+AGG	+	chr8_4:55449604-55449623	Msa1334800:intron	30.0%
	ACATAACATTCCAAAAGGAA+AGG	-	chr8_4:55449941-55449960	None:intergenic	30.0%
!!!	TTTCCTTTTGGAATGTTATG+TGG	+	chr8_4:55449940-55449959	Msa1334800:three_prime_UTR	30.0%
	AACAGAAACAAACAAGAAAG+TGG	-	chr8_4:55450044-55450063	None:intergenic	30.0%
	GTAAACTTGTACCAATTTCA+AGG	-	chr8_4:55450072-55450091	None:intergenic	30.0%
!	TGCTAGGTTATTTCCATTGA+GGG	-	chr8_4:55448422-55448441	None:intergenic	35.0%
!	ATGCTAGGTTATTTCCATTG+AGG	-	chr8_4:55448423-55448442	None:intergenic	35.0%
	GTGATTTAGAGGAAAATGCT+AGG	-	chr8_4:55448438-55448457	None:intergenic	35.0%
	GGAACAAAAAGGTGATTTAG+AGG	-	chr8_4:55448449-55448468	None:intergenic	35.0%
!	TGAAGTTGAGTTGCTTTCAA+AGG	-	chr8_4:55448470-55448489	None:intergenic	35.0%
	GGGAATTGAAAGAAAGAGAA+AGG	-	chr8_4:55448535-55448554	None:intergenic	35.0%
	TGAAAGGGATCAATATCATC+AGG	-	chr8_4:55448565-55448584	None:intergenic	35.0%
	AATCAACATCATGTTGTTGG+AGG	-	chr8_4:55448606-55448625	None:intergenic	35.0%
	GGAAATCAACATCATGTTGT+TGG	-	chr8_4:55448609-55448628	None:intergenic	35.0%
!	TTGTTATTCATCACAACAGG+TGG	-	chr8_4:55448643-55448662	None:intergenic	35.0%
!	CTGTTGTTATTCATCACAAC+AGG	-	chr8_4:55448646-55448665	None:intergenic	35.0%
	GCTTTGATTGTTGAGTTTGA+AGG	-	chr8_4:55448688-55448707	None:intergenic	35.0%
!!!	GAAGTTGCAAAGAGGTTTTT+TGG	+	chr8_4:55448856-55448875	Msa1334800:CDS	35.0%
	TGAAAAAGCAAGCAAAACAG+TGG	+	chr8_4:55448900-55448919	Msa1334800:CDS	35.0%
	TCAACTTCTGAATGTACTGA+AGG	+	chr8_4:55449006-55449025	Msa1334800:CDS	35.0%
	TCAAGCTTGGATAATGAAGT+TGG	+	chr8_4:55449033-55449052	Msa1334800:CDS	35.0%
	GTAGAGAAAAAGCAAGAGAA+AGG	+	chr8_4:55449148-55449167	Msa1334800:CDS	35.0%
	AATCAGCTTCACATGATCAA+AGG	-	chr8_4:55449346-55449365	None:intergenic	35.0%
	AAGCTACTCTCAAAAAGCTA+AGG	+	chr8_4:55449386-55449405	Msa1334800:CDS	35.0%
	AGAGAATTGAACATCATAGG+TGG	-	chr8_4:55449462-55449481	None:intergenic	35.0%
	TGAACAATTTCACCAATCCA+TGG	+	chr8_4:55449779-55449798	Msa1334800:CDS	35.0%
	ACCAATCCATGGAAAAAACT+TGG	+	chr8_4:55449790-55449809	Msa1334800:CDS	35.0%
	CCAATCCATGGAAAAAACTT+GGG	+	chr8_4:55449791-55449810	Msa1334800:CDS	35.0%
	GGTAGCATGTTAATTAGATG+CGG	-	chr8_4:55449830-55449849	None:intergenic	35.0%
	AAAGGAGGTAGTGATGATAA+GGG	-	chr8_4:55449863-55449882	None:intergenic	35.0%
	AAAAGGAGGTAGTGATGATA+AGG	-	chr8_4:55449864-55449883	None:intergenic	35.0%
	TCACCACATAACATTCCAAA+AGG	-	chr8_4:55449946-55449965	None:intergenic	35.0%
!!!	TTTTGGAATGTTATGTGGTG+AGG	+	chr8_4:55449945-55449964	Msa1334800:three_prime_UTR	35.0%
!	GTGAGGTATCTTCAGAATTT+CGG	+	chr8_4:55449962-55449981	Msa1334800:three_prime_UTR	35.0%
!	TGCTAGGTTATTTCCATTGA+GGG	-	chr8_4:55448422-55448441	None:intergenic	35.0%
!	ATGCTAGGTTATTTCCATTG+AGG	-	chr8_4:55448423-55448442	None:intergenic	35.0%
	GTGATTTAGAGGAAAATGCT+AGG	-	chr8_4:55448438-55448457	None:intergenic	35.0%
	GGAACAAAAAGGTGATTTAG+AGG	-	chr8_4:55448449-55448468	None:intergenic	35.0%
!	TGAAGTTGAGTTGCTTTCAA+AGG	-	chr8_4:55448470-55448489	None:intergenic	35.0%
	GGGAATTGAAAGAAAGAGAA+AGG	-	chr8_4:55448535-55448554	None:intergenic	35.0%
	TGAAAGGGATCAATATCATC+AGG	-	chr8_4:55448565-55448584	None:intergenic	35.0%
	AATCAACATCATGTTGTTGG+AGG	-	chr8_4:55448606-55448625	None:intergenic	35.0%
	GGAAATCAACATCATGTTGT+TGG	-	chr8_4:55448609-55448628	None:intergenic	35.0%
!	TTGTTATTCATCACAACAGG+TGG	-	chr8_4:55448643-55448662	None:intergenic	35.0%
!	CTGTTGTTATTCATCACAAC+AGG	-	chr8_4:55448646-55448665	None:intergenic	35.0%
	GCTTTGATTGTTGAGTTTGA+AGG	-	chr8_4:55448688-55448707	None:intergenic	35.0%
!!!	GAAGTTGCAAAGAGGTTTTT+TGG	+	chr8_4:55448856-55448875	Msa1334800:CDS	35.0%
	TGAAAAAGCAAGCAAAACAG+TGG	+	chr8_4:55448900-55448919	Msa1334800:CDS	35.0%
	TCAACTTCTGAATGTACTGA+AGG	+	chr8_4:55449006-55449025	Msa1334800:CDS	35.0%
	TCAAGCTTGGATAATGAAGT+TGG	+	chr8_4:55449033-55449052	Msa1334800:CDS	35.0%
	GTAGAGAAAAAGCAAGAGAA+AGG	+	chr8_4:55449148-55449167	Msa1334800:CDS	35.0%
	AATCAGCTTCACATGATCAA+AGG	-	chr8_4:55449346-55449365	None:intergenic	35.0%
	AAGCTACTCTCAAAAAGCTA+AGG	+	chr8_4:55449386-55449405	Msa1334800:CDS	35.0%
	AGAGAATTGAACATCATAGG+TGG	-	chr8_4:55449462-55449481	None:intergenic	35.0%
	TGAACAATTTCACCAATCCA+TGG	+	chr8_4:55449779-55449798	Msa1334800:CDS	35.0%
	ACCAATCCATGGAAAAAACT+TGG	+	chr8_4:55449790-55449809	Msa1334800:CDS	35.0%
	CCAATCCATGGAAAAAACTT+GGG	+	chr8_4:55449791-55449810	Msa1334800:CDS	35.0%
	GGTAGCATGTTAATTAGATG+CGG	-	chr8_4:55449830-55449849	None:intergenic	35.0%
	AAAGGAGGTAGTGATGATAA+GGG	-	chr8_4:55449863-55449882	None:intergenic	35.0%
	AAAAGGAGGTAGTGATGATA+AGG	-	chr8_4:55449864-55449883	None:intergenic	35.0%
	TCACCACATAACATTCCAAA+AGG	-	chr8_4:55449946-55449965	None:intergenic	35.0%
!!!	TTTTGGAATGTTATGTGGTG+AGG	+	chr8_4:55449945-55449964	Msa1334800:three_prime_UTR	35.0%
!	GTGAGGTATCTTCAGAATTT+CGG	+	chr8_4:55449962-55449981	Msa1334800:three_prime_UTR	35.0%
	TCAACAAACAGTTCCCTCAA+TGG	+	chr8_4:55448406-55448425	Msa1334800:CDS	40.0%
	AAGAAAGAGAAAGGAGGAAG+AGG	-	chr8_4:55448526-55448545	None:intergenic	40.0%
!	ATTTGGTGGCTGTCTTGAAA+GGG	-	chr8_4:55448580-55448599	None:intergenic	40.0%
	CATGTTGTTGGAGGAAGATT+TGG	-	chr8_4:55448597-55448616	None:intergenic	40.0%
!!	ACAGTACTGATCATCATCAG+CGG	+	chr8_4:55448662-55448681	Msa1334800:CDS	40.0%
	TGGTAAAGGCAAAACTGTAG+TGG	+	chr8_4:55448735-55448754	Msa1334800:CDS	40.0%
!	TGTCACTTGAAGTTGCAAAG+AGG	+	chr8_4:55448848-55448867	Msa1334800:CDS	40.0%
	GTTTGATCTCAAGGTTGGAT+TGG	-	chr8_4:55448939-55448958	None:intergenic	40.0%
!	AAGGTGTTTGATCTCAAGGT+TGG	-	chr8_4:55448944-55448963	None:intergenic	40.0%
!	TTGCAAGGTGTTTGATCTCA+AGG	-	chr8_4:55448948-55448967	None:intergenic	40.0%
	GTTGAAGATGCACTCTTAGT+AGG	-	chr8_4:55448991-55449010	None:intergenic	40.0%
	TACTGAAGGAGTTTCAAGCT+TGG	+	chr8_4:55449020-55449039	Msa1334800:CDS	40.0%
	TTTCAAAGGGGTTCCAAATG+AGG	-	chr8_4:55449269-55449288	None:intergenic	40.0%
!	TTGGAACCCCTTTGAAAATG+TGG	+	chr8_4:55449272-55449291	Msa1334800:CDS	40.0%
	GAAAATGTGGAAGAATCTGC+AGG	+	chr8_4:55449285-55449304	Msa1334800:CDS	40.0%
	AGCTTCACATGATCAAAGGA+AGG	-	chr8_4:55449342-55449361	None:intergenic	40.0%
	TCATGTGAAGCTGATTGATG+AGG	+	chr8_4:55449350-55449369	Msa1334800:CDS	40.0%
	AGAGAGAAAAAGGAAGAGAG+AGG	+	chr8_4:55449614-55449633	Msa1334800:intron	40.0%
!!!	CCCAAGTTTTTTCCATGGAT+TGG	-	chr8_4:55449794-55449813	None:intergenic	40.0%
	ATCCATGGAAAAAACTTGGG+AGG	+	chr8_4:55449794-55449813	Msa1334800:CDS	40.0%
	AAGGAGGTAGTGATGATAAG+GGG	-	chr8_4:55449862-55449881	None:intergenic	40.0%
	TCTGTTCCTGACCTTGAAAT+TGG	+	chr8_4:55450058-55450077	Msa1334800:three_prime_UTR	40.0%
	CTTGTACCAATTTCAAGGTC+AGG	-	chr8_4:55450067-55450086	None:intergenic	40.0%
	TCAACAAACAGTTCCCTCAA+TGG	+	chr8_4:55448406-55448425	Msa1334800:CDS	40.0%
	AAGAAAGAGAAAGGAGGAAG+AGG	-	chr8_4:55448526-55448545	None:intergenic	40.0%
!	ATTTGGTGGCTGTCTTGAAA+GGG	-	chr8_4:55448580-55448599	None:intergenic	40.0%
	CATGTTGTTGGAGGAAGATT+TGG	-	chr8_4:55448597-55448616	None:intergenic	40.0%
!!	ACAGTACTGATCATCATCAG+CGG	+	chr8_4:55448662-55448681	Msa1334800:CDS	40.0%
	TGGTAAAGGCAAAACTGTAG+TGG	+	chr8_4:55448735-55448754	Msa1334800:CDS	40.0%
!	TGTCACTTGAAGTTGCAAAG+AGG	+	chr8_4:55448848-55448867	Msa1334800:CDS	40.0%
	GTTTGATCTCAAGGTTGGAT+TGG	-	chr8_4:55448939-55448958	None:intergenic	40.0%
!	AAGGTGTTTGATCTCAAGGT+TGG	-	chr8_4:55448944-55448963	None:intergenic	40.0%
!	TTGCAAGGTGTTTGATCTCA+AGG	-	chr8_4:55448948-55448967	None:intergenic	40.0%
	GTTGAAGATGCACTCTTAGT+AGG	-	chr8_4:55448991-55449010	None:intergenic	40.0%
	TACTGAAGGAGTTTCAAGCT+TGG	+	chr8_4:55449020-55449039	Msa1334800:CDS	40.0%
	TTTCAAAGGGGTTCCAAATG+AGG	-	chr8_4:55449269-55449288	None:intergenic	40.0%
!	TTGGAACCCCTTTGAAAATG+TGG	+	chr8_4:55449272-55449291	Msa1334800:CDS	40.0%
	GAAAATGTGGAAGAATCTGC+AGG	+	chr8_4:55449285-55449304	Msa1334800:CDS	40.0%
	AGCTTCACATGATCAAAGGA+AGG	-	chr8_4:55449342-55449361	None:intergenic	40.0%
	TCATGTGAAGCTGATTGATG+AGG	+	chr8_4:55449350-55449369	Msa1334800:CDS	40.0%
	AGAGAGAAAAAGGAAGAGAG+AGG	+	chr8_4:55449614-55449633	Msa1334800:intron	40.0%
!!!	CCCAAGTTTTTTCCATGGAT+TGG	-	chr8_4:55449794-55449813	None:intergenic	40.0%
	ATCCATGGAAAAAACTTGGG+AGG	+	chr8_4:55449794-55449813	Msa1334800:CDS	40.0%
	AAGGAGGTAGTGATGATAAG+GGG	-	chr8_4:55449862-55449881	None:intergenic	40.0%
	TCTGTTCCTGACCTTGAAAT+TGG	+	chr8_4:55450058-55450077	Msa1334800:three_prime_UTR	40.0%
	CTTGTACCAATTTCAAGGTC+AGG	-	chr8_4:55450067-55450086	None:intergenic	40.0%
	AGAAAGGAGGAAGAGGAAAG+GGG	-	chr8_4:55448519-55448538	None:intergenic	45.0%
	GAGAAAGGAGGAAGAGGAAA+GGG	-	chr8_4:55448520-55448539	None:intergenic	45.0%
	AGAGAAAGGAGGAAGAGGAA+AGG	-	chr8_4:55448521-55448540	None:intergenic	45.0%
!!	GATTTGGTGGCTGTCTTGAA+AGG	-	chr8_4:55448581-55448600	None:intergenic	45.0%
	GTTGTTGGAGGAAGATTTGG+TGG	-	chr8_4:55448594-55448613	None:intergenic	45.0%
	CAACAGGTGGATGATGAAGT+TGG	-	chr8_4:55448630-55448649	None:intergenic	45.0%
!!	CGGTTTTGATCTTGCTGTGT+CGG	-	chr8_4:55448798-55448817	None:intergenic	45.0%
	AGCAAGATCAAAACCGCGAA+AGG	+	chr8_4:55448802-55448821	Msa1334800:CDS	45.0%
	TCAAAACCGCGAAAGGACTA+AGG	+	chr8_4:55448809-55448828	Msa1334800:CDS	45.0%
	CAAAACCGCGAAAGGACTAA+GGG	+	chr8_4:55448810-55448829	Msa1334800:CDS	45.0%
	AAGCAAGCAAAACAGTGGAC+TGG	+	chr8_4:55448905-55448924	Msa1334800:CDS	45.0%
	CAAGAGAAAGGGCAAGAGAA+AGG	+	chr8_4:55449160-55449179	Msa1334800:CDS	45.0%
!	GGTACACATCAGAGTACTCA+AGG	+	chr8_4:55449306-55449325	Msa1334800:CDS	45.0%
!!!	TGCCTCCCAAGTTTTTTCCA+TGG	-	chr8_4:55449799-55449818	None:intergenic	45.0%
!	GATGATAAGGGGTGCAAGTA+CGG	-	chr8_4:55449851-55449870	None:intergenic	45.0%
!	ACCTCCTTTTTGTGTCAGTC+AGG	+	chr8_4:55449874-55449893	Msa1334800:three_prime_UTR	45.0%
	TGAGCCTGACTGACACAAAA+AGG	-	chr8_4:55449881-55449900	None:intergenic	45.0%
	AGAAAGGAGGAAGAGGAAAG+GGG	-	chr8_4:55448519-55448538	None:intergenic	45.0%
	GAGAAAGGAGGAAGAGGAAA+GGG	-	chr8_4:55448520-55448539	None:intergenic	45.0%
	AGAGAAAGGAGGAAGAGGAA+AGG	-	chr8_4:55448521-55448540	None:intergenic	45.0%
!!	GATTTGGTGGCTGTCTTGAA+AGG	-	chr8_4:55448581-55448600	None:intergenic	45.0%
	GTTGTTGGAGGAAGATTTGG+TGG	-	chr8_4:55448594-55448613	None:intergenic	45.0%
	CAACAGGTGGATGATGAAGT+TGG	-	chr8_4:55448630-55448649	None:intergenic	45.0%
!!	CGGTTTTGATCTTGCTGTGT+CGG	-	chr8_4:55448798-55448817	None:intergenic	45.0%
	AGCAAGATCAAAACCGCGAA+AGG	+	chr8_4:55448802-55448821	Msa1334800:CDS	45.0%
	TCAAAACCGCGAAAGGACTA+AGG	+	chr8_4:55448809-55448828	Msa1334800:CDS	45.0%
	CAAAACCGCGAAAGGACTAA+GGG	+	chr8_4:55448810-55448829	Msa1334800:CDS	45.0%
	AAGCAAGCAAAACAGTGGAC+TGG	+	chr8_4:55448905-55448924	Msa1334800:CDS	45.0%
	CAAGAGAAAGGGCAAGAGAA+AGG	+	chr8_4:55449160-55449179	Msa1334800:CDS	45.0%
!	GGTACACATCAGAGTACTCA+AGG	+	chr8_4:55449306-55449325	Msa1334800:CDS	45.0%
!!!	TGCCTCCCAAGTTTTTTCCA+TGG	-	chr8_4:55449799-55449818	None:intergenic	45.0%
!	GATGATAAGGGGTGCAAGTA+CGG	-	chr8_4:55449851-55449870	None:intergenic	45.0%
!	ACCTCCTTTTTGTGTCAGTC+AGG	+	chr8_4:55449874-55449893	Msa1334800:three_prime_UTR	45.0%
	TGAGCCTGACTGACACAAAA+AGG	-	chr8_4:55449881-55449900	None:intergenic	45.0%
	GAAAGGAGGAAGAGGAAAGG+GGG	-	chr8_4:55448518-55448537	None:intergenic	50.0%
	AATCTTCTTCCTGCAGCTGC+TGG	+	chr8_4:55448715-55448734	Msa1334800:CDS	50.0%
	GCCTGACTGACACAAAAAGG+AGG	-	chr8_4:55449878-55449897	None:intergenic	50.0%
	GAAAGGAGGAAGAGGAAAGG+GGG	-	chr8_4:55448518-55448537	None:intergenic	50.0%
	AATCTTCTTCCTGCAGCTGC+TGG	+	chr8_4:55448715-55448734	Msa1334800:CDS	50.0%
	GCCTGACTGACACAAAAAGG+AGG	-	chr8_4:55449878-55449897	None:intergenic	50.0%
	CTTCCTGCAGCTGCTGGTAA+AGG	+	chr8_4:55448721-55448740	Msa1334800:CDS	55.0%
	TTGCCTTTACCAGCAGCTGC+AGG	-	chr8_4:55448727-55448746	None:intergenic	55.0%
	CCGATCCCTTAGTCCTTTCG+CGG	-	chr8_4:55448818-55448837	None:intergenic	55.0%
	CCGCGAAAGGACTAAGGGAT+CGG	+	chr8_4:55448815-55448834	Msa1334800:CDS	55.0%
	CTTCCTGCAGCTGCTGGTAA+AGG	+	chr8_4:55448721-55448740	Msa1334800:CDS	55.0%
	TTGCCTTTACCAGCAGCTGC+AGG	-	chr8_4:55448727-55448746	None:intergenic	55.0%
	CCGATCCCTTAGTCCTTTCG+CGG	-	chr8_4:55448818-55448837	None:intergenic	55.0%
	CCGCGAAAGGACTAAGGGAT+CGG	+	chr8_4:55448815-55448834	Msa1334800:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	55448361	55450111	55448361	ID=Msa1334800;Name=Msa1334800
chr8_4	mRNA	55448361	55450111	55448361	ID=Msa1334800-mRNA-1;Parent=Msa1334800;Name=Msa1334800-mRNA-1;_AED=0.09;_eAED=0.12;_QI=0\|0\|0.5\|1\|0\|0\|2\|271\|392
chr8_4	exon	55448361	55449469	55448361	ID=Msa1334800-mRNA-1:exon:17301;Parent=Msa1334800-mRNA-1
chr8_4	exon	55449771	55450111	55449771	ID=Msa1334800-mRNA-1:exon:17302;Parent=Msa1334800-mRNA-1
chr8_4	CDS	55448361	55449469	55448361	ID=Msa1334800-mRNA-1:cds;Parent=Msa1334800-mRNA-1
chr8_4	CDS	55449771	55449840	55449771	ID=Msa1334800-mRNA-1:cds;Parent=Msa1334800-mRNA-1
chr8_4	three_prime_UTR	55449841	55450111	55449841	ID=Msa1334800-mRNA-1:three_prime_utr;Parent=Msa1334800-mRNA-1

Gene Sequence

>Msa1334800

ACTGTCTATCTCAATCTCAATTCTCAACATATTCCAGATATGTATTCAACAAACAGTTCCCTCAATGGAAATAACCTAGCATTTTCCTCTAAATCACCTTTTTGTTCCTTTGAAAGCAACTCAACTTCATCAACAGATATTGAAAACAGTCATTCCCCCTTTCCTCTTCCTCCTTTCTCTTTCTTTCAATTCCCTAATTATCCTGATGATATTGATCCCTTTCAAGACAGCCACCAAATCTTCCTCCAACAACATGATGTTGATTTCCAACTTCATCATCCACCTGTTGTGATGAATAACAACAGTACTGATCATCATCAGCGGCCTTCAAACTCAACAATCAAAGCTAACAACAATCTTCTTCCTGCAGCTGCTGGTAAAGGCAAAACTGTAGTGGATCAGCAGATCCAAAGAAAAAGATCTAGCAAGAGAGACCGACACAGCAAGATCAAAACCGCGAAAGGACTAAGGGATCGGAGAATGAGATTGTCACTTGAAGTTGCAAAGAGGTTTTTTGGTCTTCAAGATATGTTAGGCTTTGAAAAAGCAAGCAAAACAGTGGACTGGTTGCTCAACCAATCCAACCTTGAGATCAAACACCTTGCAAGAGAGAAAAATGTTAATTTTCCTACTAAGAGTGCATCTTCAACTTCTGAATGTACTGAAGGAGTTTCAAGCTTGGATAATGAAGTTGGAAATCAAGAAGAACCACAACAACAAAAACTTGTTATGAAGAGAAGAAATAGTACTAATAAGGTTTGTAGAAAGAGTGCATTCAATTCTATAGGTAGAGAAAAAGCAAGAGAAAGGGCAAGAGAAAGGACAAAAGAAAAAAAGAAGGCTAGAACATCACTAGTTGATGAATCAAATTCAAAGCAATACAATGAAGAAGGAATAAAAACTAACCTCATTTGGAACCCCTTTGAAAATGTGGAAGAATCTGCAGGTACACATCAGAGTACTCAAGGTGTGAATCATCCTTCCTTTGATCATGTGAAGCTGATTGATGAGGCTGAAGTAGAAACAAGCTACTCTCAAAAAGCTAAGGAACAACATTCAGATGAAGAAAATTCTTTGTTCATTATGAGCAAATGGAGTCCACCTATGATCATCAATTTGAACAATTTCACCAATCCATGGAAAAAACTTGGGAGGCATACAACAACCGCATCTAATTAA

Protein sequence

>Msa1334800

TVYLNLNSQHIPDMYSTNSSLNGNNLAFSSKSPFCSFESNSTSSTDIENSHSPFPLPPFSFFQFPNYPDDIDPFQDSHQIFLQQHDVDFQLHHPPVVMNNNSTDHHQRPSNSTIKANNNLLPAAAGKGKTVVDQQIQRKRSSKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVDWLLNQSNLEIKHLAREKNVNFPTKSASSTSECTEGVSSLDNEVGNQEEPQQQKLVMKRRNSTNKVCRKSAFNSIGREKARERARERTKEKKKARTSLVDESNSKQYNEEGIKTNLIWNPFENVEESAGTHQSTQGVNHPSFDHVKLIDEAEVETSYSQKAKEQHSDEENSLFIMSKWSPPMIINLNNFTNPWKKLGRHTTTASN*