Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1260950 | XP_013458053.1 | 95.902 | 366 | 11 | 4 | 1 | 363 | 1 | 365 | 0.0 | 707 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1260950 | sp|Q8LN68|TB1_ORYSJ | 41.401 | 157 | 75 | 2 | 130 | 269 | 115 | 271 | 1.03e-25 | 110 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1260950 | A0A072UQH4 | 95.902 | 366 | 11 | 4 | 1 | 363 | 1 | 365 | 0.0 | 707 |
Gene ID | Type | Classification |
---|---|---|
Msa1260950 | TF | TCP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1260950 | Msa1334800 | 0.923177 | 3.744789e-89 | -8.615850e-47 |
Msa1214510 | Msa1260950 | 0.807296 | 5.418727e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1260950 | MtrunA17_Chr4g0062691 | 95.902 | 366 | 11 | 4 | 1 | 363 | 1 | 365 | 0.0 | 707 |
Msa1260950 | MtrunA17_Chr6g0456881 | 40.588 | 170 | 86 | 3 | 109 | 265 | 105 | 272 | 6.37e-28 | 113 |
Msa1260950 | MtrunA17_Chr7g0220931 | 64.516 | 62 | 22 | 0 | 132 | 193 | 122 | 183 | 1.55e-20 | 92.0 |
Msa1260950 | MtrunA17_Chr1g0205131 | 55.696 | 79 | 33 | 1 | 118 | 194 | 95 | 173 | 8.00e-20 | 90.1 |
Msa1260950 | MtrunA17_Chr8g0376571 | 35.329 | 167 | 83 | 6 | 126 | 267 | 57 | 223 | 3.01e-17 | 83.2 |
Msa1260950 | MtrunA17_Chr8g0360441 | 44.898 | 98 | 52 | 2 | 108 | 204 | 31 | 127 | 3.08e-16 | 79.7 |
Msa1260950 | MtrunA17_Chr7g0219461 | 31.356 | 236 | 124 | 9 | 131 | 357 | 58 | 264 | 7.64e-16 | 78.2 |
Msa1260950 | MtrunA17_Chr2g0316391 | 52.239 | 67 | 31 | 1 | 123 | 189 | 14 | 79 | 1.81e-14 | 73.2 |
Msa1260950 | MtrunA17_Chr6g0454781 | 56.897 | 58 | 25 | 0 | 131 | 188 | 50 | 107 | 2.45e-14 | 73.6 |
Msa1260950 | MtrunA17_Chr4g0040921 | 48.438 | 64 | 33 | 0 | 126 | 189 | 18 | 81 | 4.59e-14 | 72.4 |
Msa1260950 | MtrunA17_Chr3g0086961 | 32.394 | 142 | 88 | 2 | 131 | 267 | 58 | 196 | 7.75e-14 | 72.4 |
Msa1260950 | MtrunA17_Chr2g0325171 | 47.619 | 63 | 33 | 0 | 126 | 188 | 20 | 82 | 1.23e-13 | 71.2 |
Msa1260950 | MtrunA17_Chr4g0061561 | 48.276 | 58 | 30 | 0 | 131 | 188 | 58 | 115 | 6.98e-12 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1260950 | AT3G18550.1 | 31.250 | 304 | 160 | 9 | 1 | 262 | 5 | 301 | 2.68e-24 | 103 |
Msa1260950 | AT3G18550.4 | 31.250 | 304 | 160 | 9 | 1 | 262 | 5 | 301 | 2.68e-24 | 103 |
Msa1260950 | AT3G18550.3 | 31.250 | 304 | 160 | 9 | 1 | 262 | 5 | 301 | 3.06e-24 | 103 |
Msa1260950 | AT3G18550.2 | 36.058 | 208 | 109 | 5 | 1 | 189 | 5 | 207 | 5.81e-24 | 102 |
Msa1260950 | AT1G67260.2 | 51.546 | 97 | 39 | 1 | 107 | 195 | 56 | 152 | 2.32e-23 | 100 |
Msa1260950 | AT1G67260.3 | 51.546 | 97 | 39 | 1 | 107 | 195 | 56 | 152 | 2.32e-23 | 100 |
Msa1260950 | AT1G67260.1 | 51.546 | 97 | 39 | 1 | 107 | 195 | 56 | 152 | 2.73e-23 | 100 |
Msa1260950 | AT1G68800.1 | 63.768 | 69 | 24 | 1 | 121 | 188 | 102 | 170 | 6.90e-22 | 95.9 |
Msa1260950 | AT1G68800.2 | 63.768 | 69 | 24 | 1 | 121 | 188 | 102 | 170 | 7.05e-22 | 96.3 |
Msa1260950 | AT4G18390.1 | 35.519 | 183 | 78 | 6 | 126 | 292 | 38 | 196 | 2.67e-19 | 88.6 |
Msa1260950 | AT4G18390.2 | 35.519 | 183 | 78 | 6 | 126 | 292 | 38 | 196 | 2.67e-19 | 88.6 |
Msa1260950 | AT3G15030.2 | 43.878 | 98 | 54 | 1 | 93 | 189 | 7 | 104 | 2.27e-16 | 80.5 |
Msa1260950 | AT3G15030.4 | 43.878 | 98 | 54 | 1 | 93 | 189 | 7 | 104 | 2.27e-16 | 80.5 |
Msa1260950 | AT3G15030.3 | 43.878 | 98 | 54 | 1 | 93 | 189 | 7 | 104 | 2.27e-16 | 80.5 |
Msa1260950 | AT3G15030.1 | 43.878 | 98 | 54 | 1 | 93 | 189 | 7 | 104 | 2.27e-16 | 80.5 |
Msa1260950 | AT1G53230.1 | 48.148 | 81 | 41 | 1 | 111 | 190 | 29 | 109 | 4.35e-15 | 76.6 |
Msa1260950 | AT1G53230.2 | 48.148 | 81 | 41 | 1 | 111 | 190 | 29 | 109 | 4.35e-15 | 76.6 |
Msa1260950 | AT1G30210.2 | 36.879 | 141 | 65 | 3 | 126 | 266 | 46 | 162 | 1.07e-14 | 74.7 |
Msa1260950 | AT1G30210.1 | 36.879 | 141 | 65 | 3 | 126 | 266 | 46 | 162 | 1.07e-14 | 74.7 |
Msa1260950 | AT2G31070.1 | 43.750 | 80 | 44 | 1 | 110 | 188 | 8 | 87 | 3.53e-13 | 70.5 |
Msa1260950 | AT3G02150.1 | 51.724 | 58 | 28 | 0 | 131 | 188 | 75 | 132 | 9.94e-13 | 68.6 |
Msa1260950 | AT3G02150.2 | 51.724 | 58 | 28 | 0 | 131 | 188 | 75 | 132 | 2.17e-12 | 68.2 |
Msa1260950 | AT5G60970.1 | 48.276 | 58 | 30 | 0 | 131 | 188 | 64 | 121 | 6.91e-12 | 66.6 |
Find 75 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAATATCATCAGGATAATT+AGG | 0.171473 | 8_2:+63124374 | None:intergenic |
TTATTTCTTTCCTTTCCTTT+TGG | 0.203378 | 8_2:-63122999 | Msa1260950:three_prime_UTR |
GAGAAGAAATAGTACTAATA+AGG | 0.277919 | 8_2:-63123832 | Msa1260950:CDS |
GAGAAAGGAGGAAGAGGAAA+GGG | 0.310050 | 8_2:+63124410 | None:intergenic |
TCTGTTCCTGACCTTGAAAT+TGG | 0.315222 | 8_2:-63122869 | Msa1260950:three_prime_UTR |
TTGCTTTCAAAGGAACAAAA+AGG | 0.336731 | 8_2:+63124470 | None:intergenic |
GTGAGGTATCTTCAGAATTT+CGG | 0.343155 | 8_2:-63122965 | Msa1260950:three_prime_UTR |
CATGTTGTTGGAGGAAGATT+TGG | 0.344830 | 8_2:+63124333 | None:intergenic |
TTTGGTCTTCAAGATATGTT+AGG | 0.353164 | 8_2:-63124053 | Msa1260950:CDS |
TGAGCCTGACTGACACAAAA+AGG | 0.360607 | 8_2:+63123049 | None:intergenic |
AGAAAGGAGGAAGAGGAAAG+GGG | 0.382698 | 8_2:+63124411 | None:intergenic |
AAAGGAGGTGGTGATGATAA+GGG | 0.399159 | 8_2:+63123067 | None:intergenic |
TGCTAGGTTATTTCCATTGA+GGG | 0.401156 | 8_2:+63124508 | None:intergenic |
GTAAACTTGTACCAATTTCA+AGG | 0.404054 | 8_2:+63122858 | None:intergenic |
CAATATCATCAGGATAATTA+GGG | 0.427407 | 8_2:+63124375 | None:intergenic |
AAAAGGAGGTGGTGATGATA+AGG | 0.428540 | 8_2:+63123066 | None:intergenic |
AGAGAAAGGAGGAAGAGGAA+AGG | 0.429249 | 8_2:+63124409 | None:intergenic |
TTGCAAGGTGTTTGATCTCA+AGG | 0.429585 | 8_2:+63123982 | None:intergenic |
GCTTTGATTGTTGAGTTTGA+AGG | 0.434606 | 8_2:+63124242 | None:intergenic |
CTTCCTGCAGCTGCTGGTAA+AGG | 0.436015 | 8_2:-63124206 | Msa1260950:CDS |
TCAAGCTTGGATAATGAAGT+TGG | 0.437838 | 8_2:-63123894 | Msa1260950:CDS |
GTTGAAGATGCACTCTTAGT+AGG | 0.445865 | 8_2:+63123939 | None:intergenic |
TTTCAAAGGGGTTCCAAATG+AGG | 0.447560 | 8_2:+63123661 | None:intergenic |
CTTTGTTCATTATGAGCAAA+TGG | 0.450640 | 8_2:-63123494 | Msa1260950:CDS |
TTGAGAGAATTGAACATCAT+AGG | 0.458304 | 8_2:+63123465 | None:intergenic |
GGAAATCAACATCATGTTGT+TGG | 0.463207 | 8_2:+63124321 | None:intergenic |
TCAAAACCGCGAAAGGACTA+AGG | 0.463298 | 8_2:-63124118 | Msa1260950:CDS |
CTTGTACCAATTTCAAGGTC+AGG | 0.464630 | 8_2:+63122863 | None:intergenic |
CAAGAGAAAGGGCAAGAGAA+AGG | 0.468363 | 8_2:-63123767 | Msa1260950:CDS |
CTGTTGTTATTCATCACAAC+AGG | 0.468470 | 8_2:+63124284 | None:intergenic |
GATTTGGTGGCTGTCTTGAA+AGG | 0.472274 | 8_2:+63124349 | None:intergenic |
GAAAGGAGGAAGAGGAAAGG+GGG | 0.475237 | 8_2:+63124412 | None:intergenic |
GGGAATTGAAAGAAAGAGAA+AGG | 0.476940 | 8_2:+63124395 | None:intergenic |
AAGAGTGCATTCAATTCTAT+AGG | 0.477613 | 8_2:-63123801 | Msa1260950:CDS |
CCGATCCCTTAGTCCTTTCG+CGG | 0.487376 | 8_2:+63124112 | None:intergenic |
AATCTTCTTCCTGCAGCTGC+TGG | 0.488028 | 8_2:-63124212 | Msa1260950:CDS |
GTTTGATCTCAAGGTTGGAT+TGG | 0.498353 | 8_2:+63123991 | None:intergenic |
TTGGAACCCCTTTGAAAATG+TGG | 0.498644 | 8_2:-63123655 | Msa1260950:CDS |
TCAACAAACAGTTCCCTCAA+TGG | 0.498770 | 8_2:-63124521 | Msa1260950:CDS |
AAGAAAGAGAAAGGAGGAAG+AGG | 0.499947 | 8_2:+63124404 | None:intergenic |
CAACAGGTGGATGATGAAGT+TGG | 0.500835 | 8_2:+63124300 | None:intergenic |
TGAAAGGGATCAATATCATC+AGG | 0.511469 | 8_2:+63124365 | None:intergenic |
GTTGTTGGAGGAAGATTTGG+TGG | 0.511656 | 8_2:+63124336 | None:intergenic |
TGAACAATTTCACCAATCCA+TGG | 0.514462 | 8_2:-63123148 | Msa1260950:CDS |
TCAAAGCAATACAATGAAGA+AGG | 0.515193 | 8_2:-63123696 | Msa1260950:CDS |
GATGATAAGGGGTGCAAGTA+CGG | 0.515892 | 8_2:+63123079 | None:intergenic |
ATGCTAGGTTATTTCCATTG+AGG | 0.517513 | 8_2:+63124507 | None:intergenic |
TCACCACATAACATTCCAAA+AGG | 0.520050 | 8_2:+63122984 | None:intergenic |
TACTGAAGGAGTTTCAAGCT+TGG | 0.530351 | 8_2:-63123907 | Msa1260950:CDS |
TGAAGTTGAGTTGCTTTCAA+AGG | 0.532484 | 8_2:+63124460 | None:intergenic |
AACAGAAACAAACAAGAAAG+TGG | 0.538067 | 8_2:+63122886 | None:intergenic |
AAGGTGTTTGATCTCAAGGT+TGG | 0.545535 | 8_2:+63123986 | None:intergenic |
TTGCCTTTACCAGCAGCTGC+AGG | 0.547785 | 8_2:+63124203 | None:intergenic |
GAAAATGTGGAAGAATCTGC+AGG | 0.550929 | 8_2:-63123642 | Msa1260950:CDS |
ATTTGGTGGCTGTCTTGAAA+GGG | 0.555885 | 8_2:+63124350 | None:intergenic |
GTGATTTAGAGGAAAATGCT+AGG | 0.566051 | 8_2:+63124492 | None:intergenic |
AGCAAGATCAAAACCGCGAA+AGG | 0.567602 | 8_2:-63124125 | Msa1260950:CDS |
AATCAACATCATGTTGTTGG+AGG | 0.575800 | 8_2:+63124324 | None:intergenic |
CAAAACCGCGAAAGGACTAA+GGG | 0.576240 | 8_2:-63124117 | Msa1260950:CDS |
TCAACTTCTGAATGTACTGA+AGG | 0.578330 | 8_2:-63123921 | Msa1260950:CDS |
AATCAGCTTCACATGATCAA+AGG | 0.583940 | 8_2:+63123584 | None:intergenic |
AAGCAAGCAAAACAGTGGAC+TGG | 0.594986 | 8_2:-63124022 | Msa1260950:CDS |
GGTACACATCAGAGTACTCA+AGG | 0.596783 | 8_2:-63123621 | Msa1260950:CDS |
CCGCGAAAGGACTAAGGGAT+CGG | 0.598651 | 8_2:-63124112 | Msa1260950:CDS |
TTGTTATTCATCACAACAGG+TGG | 0.601473 | 8_2:+63124287 | None:intergenic |
TGTCACTTGAAGTTGCAAAG+AGG | 0.614161 | 8_2:-63124079 | Msa1260950:CDS |
ACATAACATTCCAAAAGGAA+AGG | 0.614793 | 8_2:+63122989 | None:intergenic |
AATTGAAAGAAAGAGAAAGG+AGG | 0.616668 | 8_2:+63124398 | None:intergenic |
AGCTTCACATGATCAAAGGA+AGG | 0.617475 | 8_2:+63123588 | None:intergenic |
TGGTAAAGGCAAAACTGTAG+TGG | 0.630471 | 8_2:-63124192 | Msa1260950:CDS |
AAGGAGGTGGTGATGATAAG+GGG | 0.632930 | 8_2:+63123068 | None:intergenic |
GGTAGCATGTTAATTAGATG+CGG | 0.636554 | 8_2:+63123100 | None:intergenic |
AGAGAATTGAACATCATAGG+TGG | 0.646080 | 8_2:+63123468 | None:intergenic |
TCATGTGAAGCTGATTGATG+AGG | 0.717288 | 8_2:-63123577 | Msa1260950:CDS |
ACAGTACTGATCATCATCAG+CGG | 0.729484 | 8_2:-63124265 | Msa1260950:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATGATATTTTGACAACTTT+TGG | + | chr8_2:63124114-63124133 | None:intergenic | 20.0% |
!!! | AATGATATTTTGACAACTTT+TGG | + | chr8_2:63124114-63124133 | None:intergenic | 20.0% |
! | CAATATCATCAGGATAATTA+GGG | + | chr8_2:63122993-63123012 | None:intergenic | 25.0% |
! | TCAATATCATCAGGATAATT+AGG | + | chr8_2:63122994-63123013 | None:intergenic | 25.0% |
!!! | ATAACAAGTTTTTGTTGTTG+TGG | + | chr8_2:63123510-63123529 | None:intergenic | 25.0% |
! | GAGAAGAAATAGTACTAATA+AGG | - | chr8_2:63123533-63123552 | Msa1260950:CDS | 25.0% |
! | AAGGACAAAAGAAAAAAAGA+AGG | - | chr8_2:63123617-63123636 | Msa1260950:CDS | 25.0% |
! | GAATAAAAACTAACCTCATT+TGG | - | chr8_2:63123691-63123710 | Msa1260950:CDS | 25.0% |
!! | AATTTGAACTTACTTGTTGA+AGG | + | chr8_2:63123929-63123948 | None:intergenic | 25.0% |
! | TTACTCTATATGTATATGCA+TGG | + | chr8_2:63123954-63123973 | None:intergenic | 25.0% |
! | AATAAGAAGTGAGAAAAACA+AGG | + | chr8_2:63124017-63124036 | None:intergenic | 25.0% |
!!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr8_2:63124016-63124035 | Msa1260950:CDS | 25.0% |
! | TTCTTATTGGTCAAAAACAA+TGG | - | chr8_2:63124029-63124048 | Msa1260950:CDS | 25.0% |
!!! | TTATTTCTTTCCTTTCCTTT+TGG | - | chr8_2:63124366-63124385 | Msa1260950:CDS | 25.0% |
! | CAATATCATCAGGATAATTA+GGG | + | chr8_2:63122993-63123012 | None:intergenic | 25.0% |
! | TCAATATCATCAGGATAATT+AGG | + | chr8_2:63122994-63123013 | None:intergenic | 25.0% |
!!! | ATAACAAGTTTTTGTTGTTG+TGG | + | chr8_2:63123510-63123529 | None:intergenic | 25.0% |
! | GAGAAGAAATAGTACTAATA+AGG | - | chr8_2:63123533-63123552 | Msa1260950:CDS | 25.0% |
! | AAGGACAAAAGAAAAAAAGA+AGG | - | chr8_2:63123617-63123636 | Msa1260950:CDS | 25.0% |
! | GAATAAAAACTAACCTCATT+TGG | - | chr8_2:63123691-63123710 | Msa1260950:CDS | 25.0% |
!! | AATTTGAACTTACTTGTTGA+AGG | + | chr8_2:63123929-63123948 | None:intergenic | 25.0% |
! | TTACTCTATATGTATATGCA+TGG | + | chr8_2:63123954-63123973 | None:intergenic | 25.0% |
! | AATAAGAAGTGAGAAAAACA+AGG | + | chr8_2:63124017-63124036 | None:intergenic | 25.0% |
!!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr8_2:63124016-63124035 | Msa1260950:CDS | 25.0% |
! | TTCTTATTGGTCAAAAACAA+TGG | - | chr8_2:63124029-63124048 | Msa1260950:CDS | 25.0% |
!!! | TTATTTCTTTCCTTTCCTTT+TGG | - | chr8_2:63124366-63124385 | Msa1260950:CDS | 25.0% |
TTGCTTTCAAAGGAACAAAA+AGG | + | chr8_2:63122898-63122917 | None:intergenic | 30.0% | |
AATTGAAAGAAAGAGAAAGG+AGG | + | chr8_2:63122970-63122989 | None:intergenic | 30.0% | |
! | TCTTGCTAGATCTTTTTCTT+TGG | + | chr8_2:63123209-63123228 | None:intergenic | 30.0% |
! | TTTGGTCTTCAAGATATGTT+AGG | - | chr8_2:63123312-63123331 | Msa1260950:intron | 30.0% |
! | TAACATTTTTCTCTCTTGCA+AGG | + | chr8_2:63123401-63123420 | None:intergenic | 30.0% |
! | AAGAGTGCATTCAATTCTAT+AGG | - | chr8_2:63123564-63123583 | Msa1260950:CDS | 30.0% |
TAGAGAAAAAGCAAGAGAAA+GGG | - | chr8_2:63123587-63123606 | Msa1260950:CDS | 30.0% | |
TCAAAGCAATACAATGAAGA+AGG | - | chr8_2:63123669-63123688 | Msa1260950:CDS | 30.0% | |
! | ATTCTTCCACATTTTCAAAG+GGG | + | chr8_2:63123719-63123738 | None:intergenic | 30.0% |
! | GATTCTTCCACATTTTCAAA+GGG | + | chr8_2:63123720-63123739 | None:intergenic | 30.0% |
! | AGATTCTTCCACATTTTCAA+AGG | + | chr8_2:63123721-63123740 | None:intergenic | 30.0% |
CTTTGTTCATTATGAGCAAA+TGG | - | chr8_2:63123871-63123890 | Msa1260950:CDS | 30.0% | |
TTGAGAGAATTGAACATCAT+AGG | + | chr8_2:63123903-63123922 | None:intergenic | 30.0% | |
TCAACAAAGTTGTCATCAAA+TGG | + | chr8_2:63123991-63124010 | None:intergenic | 30.0% | |
AAAACAATGGAGAGAGAAAA+AGG | - | chr8_2:63124042-63124061 | Msa1260950:CDS | 30.0% | |
ACATAACATTCCAAAAGGAA+AGG | + | chr8_2:63124379-63124398 | None:intergenic | 30.0% | |
!!! | TTTCCTTTTGGAATGTTATG+TGG | - | chr8_2:63124378-63124397 | Msa1260950:CDS | 30.0% |
AACAGAAACAAACAAGAAAG+TGG | + | chr8_2:63124482-63124501 | None:intergenic | 30.0% | |
GTAAACTTGTACCAATTTCA+AGG | + | chr8_2:63124510-63124529 | None:intergenic | 30.0% | |
TTGCTTTCAAAGGAACAAAA+AGG | + | chr8_2:63122898-63122917 | None:intergenic | 30.0% | |
AATTGAAAGAAAGAGAAAGG+AGG | + | chr8_2:63122970-63122989 | None:intergenic | 30.0% | |
! | TCTTGCTAGATCTTTTTCTT+TGG | + | chr8_2:63123209-63123228 | None:intergenic | 30.0% |
! | TTTGGTCTTCAAGATATGTT+AGG | - | chr8_2:63123312-63123331 | Msa1260950:intron | 30.0% |
! | TAACATTTTTCTCTCTTGCA+AGG | + | chr8_2:63123401-63123420 | None:intergenic | 30.0% |
! | AAGAGTGCATTCAATTCTAT+AGG | - | chr8_2:63123564-63123583 | Msa1260950:CDS | 30.0% |
TAGAGAAAAAGCAAGAGAAA+GGG | - | chr8_2:63123587-63123606 | Msa1260950:CDS | 30.0% | |
TCAAAGCAATACAATGAAGA+AGG | - | chr8_2:63123669-63123688 | Msa1260950:CDS | 30.0% | |
! | ATTCTTCCACATTTTCAAAG+GGG | + | chr8_2:63123719-63123738 | None:intergenic | 30.0% |
! | GATTCTTCCACATTTTCAAA+GGG | + | chr8_2:63123720-63123739 | None:intergenic | 30.0% |
! | AGATTCTTCCACATTTTCAA+AGG | + | chr8_2:63123721-63123740 | None:intergenic | 30.0% |
CTTTGTTCATTATGAGCAAA+TGG | - | chr8_2:63123871-63123890 | Msa1260950:CDS | 30.0% | |
TTGAGAGAATTGAACATCAT+AGG | + | chr8_2:63123903-63123922 | None:intergenic | 30.0% | |
TCAACAAAGTTGTCATCAAA+TGG | + | chr8_2:63123991-63124010 | None:intergenic | 30.0% | |
AAAACAATGGAGAGAGAAAA+AGG | - | chr8_2:63124042-63124061 | Msa1260950:CDS | 30.0% | |
ACATAACATTCCAAAAGGAA+AGG | + | chr8_2:63124379-63124398 | None:intergenic | 30.0% | |
!!! | TTTCCTTTTGGAATGTTATG+TGG | - | chr8_2:63124378-63124397 | Msa1260950:CDS | 30.0% |
AACAGAAACAAACAAGAAAG+TGG | + | chr8_2:63124482-63124501 | None:intergenic | 30.0% | |
GTAAACTTGTACCAATTTCA+AGG | + | chr8_2:63124510-63124529 | None:intergenic | 30.0% | |
! | TGCTAGGTTATTTCCATTGA+GGG | + | chr8_2:63122860-63122879 | None:intergenic | 35.0% |
! | ATGCTAGGTTATTTCCATTG+AGG | + | chr8_2:63122861-63122880 | None:intergenic | 35.0% |
GTGATTTAGAGGAAAATGCT+AGG | + | chr8_2:63122876-63122895 | None:intergenic | 35.0% | |
GGAACAAAAAGGTGATTTAG+AGG | + | chr8_2:63122887-63122906 | None:intergenic | 35.0% | |
! | TGAAGTTGAGTTGCTTTCAA+AGG | + | chr8_2:63122908-63122927 | None:intergenic | 35.0% |
GGGAATTGAAAGAAAGAGAA+AGG | + | chr8_2:63122973-63122992 | None:intergenic | 35.0% | |
TGAAAGGGATCAATATCATC+AGG | + | chr8_2:63123003-63123022 | None:intergenic | 35.0% | |
AATCAACATCATGTTGTTGG+AGG | + | chr8_2:63123044-63123063 | None:intergenic | 35.0% | |
GGAAATCAACATCATGTTGT+TGG | + | chr8_2:63123047-63123066 | None:intergenic | 35.0% | |
! | TTGTTATTCATCACAACAGG+TGG | + | chr8_2:63123081-63123100 | None:intergenic | 35.0% |
! | CTGTTGTTATTCATCACAAC+AGG | + | chr8_2:63123084-63123103 | None:intergenic | 35.0% |
GCTTTGATTGTTGAGTTTGA+AGG | + | chr8_2:63123126-63123145 | None:intergenic | 35.0% | |
!!! | GAAGTTGCAAAGAGGTTTTT+TGG | - | chr8_2:63123294-63123313 | Msa1260950:intron | 35.0% |
TGAAAAAGCAAGCAAAACAG+TGG | - | chr8_2:63123338-63123357 | Msa1260950:intron | 35.0% | |
TCAACTTCTGAATGTACTGA+AGG | - | chr8_2:63123444-63123463 | Msa1260950:intron | 35.0% | |
TCAAGCTTGGATAATGAAGT+TGG | - | chr8_2:63123471-63123490 | Msa1260950:intron | 35.0% | |
GTAGAGAAAAAGCAAGAGAA+AGG | - | chr8_2:63123586-63123605 | Msa1260950:CDS | 35.0% | |
AATCAGCTTCACATGATCAA+AGG | + | chr8_2:63123784-63123803 | None:intergenic | 35.0% | |
AAGCTACTCTCAAAAAGCTA+AGG | - | chr8_2:63123824-63123843 | Msa1260950:CDS | 35.0% | |
AGAGAATTGAACATCATAGG+TGG | + | chr8_2:63123900-63123919 | None:intergenic | 35.0% | |
TGAACAATTTCACCAATCCA+TGG | - | chr8_2:63124217-63124236 | Msa1260950:CDS | 35.0% | |
ACCAATCCATGGAAAAAACT+TGG | - | chr8_2:63124228-63124247 | Msa1260950:CDS | 35.0% | |
CCAATCCATGGAAAAAACTT+GGG | - | chr8_2:63124229-63124248 | Msa1260950:CDS | 35.0% | |
GGTAGCATGTTAATTAGATG+CGG | + | chr8_2:63124268-63124287 | None:intergenic | 35.0% | |
TCACCACATAACATTCCAAA+AGG | + | chr8_2:63124384-63124403 | None:intergenic | 35.0% | |
!!! | TTTTGGAATGTTATGTGGTG+AGG | - | chr8_2:63124383-63124402 | Msa1260950:CDS | 35.0% |
! | GTGAGGTATCTTCAGAATTT+CGG | - | chr8_2:63124400-63124419 | Msa1260950:CDS | 35.0% |
! | TGCTAGGTTATTTCCATTGA+GGG | + | chr8_2:63122860-63122879 | None:intergenic | 35.0% |
! | ATGCTAGGTTATTTCCATTG+AGG | + | chr8_2:63122861-63122880 | None:intergenic | 35.0% |
GTGATTTAGAGGAAAATGCT+AGG | + | chr8_2:63122876-63122895 | None:intergenic | 35.0% | |
GGAACAAAAAGGTGATTTAG+AGG | + | chr8_2:63122887-63122906 | None:intergenic | 35.0% | |
! | TGAAGTTGAGTTGCTTTCAA+AGG | + | chr8_2:63122908-63122927 | None:intergenic | 35.0% |
GGGAATTGAAAGAAAGAGAA+AGG | + | chr8_2:63122973-63122992 | None:intergenic | 35.0% | |
TGAAAGGGATCAATATCATC+AGG | + | chr8_2:63123003-63123022 | None:intergenic | 35.0% | |
AATCAACATCATGTTGTTGG+AGG | + | chr8_2:63123044-63123063 | None:intergenic | 35.0% | |
GGAAATCAACATCATGTTGT+TGG | + | chr8_2:63123047-63123066 | None:intergenic | 35.0% | |
! | TTGTTATTCATCACAACAGG+TGG | + | chr8_2:63123081-63123100 | None:intergenic | 35.0% |
! | CTGTTGTTATTCATCACAAC+AGG | + | chr8_2:63123084-63123103 | None:intergenic | 35.0% |
GCTTTGATTGTTGAGTTTGA+AGG | + | chr8_2:63123126-63123145 | None:intergenic | 35.0% | |
!!! | GAAGTTGCAAAGAGGTTTTT+TGG | - | chr8_2:63123294-63123313 | Msa1260950:intron | 35.0% |
TGAAAAAGCAAGCAAAACAG+TGG | - | chr8_2:63123338-63123357 | Msa1260950:intron | 35.0% | |
TCAACTTCTGAATGTACTGA+AGG | - | chr8_2:63123444-63123463 | Msa1260950:intron | 35.0% | |
TCAAGCTTGGATAATGAAGT+TGG | - | chr8_2:63123471-63123490 | Msa1260950:intron | 35.0% | |
GTAGAGAAAAAGCAAGAGAA+AGG | - | chr8_2:63123586-63123605 | Msa1260950:CDS | 35.0% | |
AATCAGCTTCACATGATCAA+AGG | + | chr8_2:63123784-63123803 | None:intergenic | 35.0% | |
AAGCTACTCTCAAAAAGCTA+AGG | - | chr8_2:63123824-63123843 | Msa1260950:CDS | 35.0% | |
AGAGAATTGAACATCATAGG+TGG | + | chr8_2:63123900-63123919 | None:intergenic | 35.0% | |
TGAACAATTTCACCAATCCA+TGG | - | chr8_2:63124217-63124236 | Msa1260950:CDS | 35.0% | |
ACCAATCCATGGAAAAAACT+TGG | - | chr8_2:63124228-63124247 | Msa1260950:CDS | 35.0% | |
CCAATCCATGGAAAAAACTT+GGG | - | chr8_2:63124229-63124248 | Msa1260950:CDS | 35.0% | |
GGTAGCATGTTAATTAGATG+CGG | + | chr8_2:63124268-63124287 | None:intergenic | 35.0% | |
TCACCACATAACATTCCAAA+AGG | + | chr8_2:63124384-63124403 | None:intergenic | 35.0% | |
!!! | TTTTGGAATGTTATGTGGTG+AGG | - | chr8_2:63124383-63124402 | Msa1260950:CDS | 35.0% |
! | GTGAGGTATCTTCAGAATTT+CGG | - | chr8_2:63124400-63124419 | Msa1260950:CDS | 35.0% |
TCAACAAACAGTTCCCTCAA+TGG | - | chr8_2:63122844-63122863 | Msa1260950:three_prime_UTR | 40.0% | |
AAGAAAGAGAAAGGAGGAAG+AGG | + | chr8_2:63122964-63122983 | None:intergenic | 40.0% | |
! | ATTTGGTGGCTGTCTTGAAA+GGG | + | chr8_2:63123018-63123037 | None:intergenic | 40.0% |
CATGTTGTTGGAGGAAGATT+TGG | + | chr8_2:63123035-63123054 | None:intergenic | 40.0% | |
!! | ACAGTACTGATCATCATCAG+CGG | - | chr8_2:63123100-63123119 | Msa1260950:exon | 40.0% |
TGGTAAAGGCAAAACTGTAG+TGG | - | chr8_2:63123173-63123192 | Msa1260950:intron | 40.0% | |
! | TGTCACTTGAAGTTGCAAAG+AGG | - | chr8_2:63123286-63123305 | Msa1260950:intron | 40.0% |
GTTTGATCTCAAGGTTGGAT+TGG | + | chr8_2:63123377-63123396 | None:intergenic | 40.0% | |
! | AAGGTGTTTGATCTCAAGGT+TGG | + | chr8_2:63123382-63123401 | None:intergenic | 40.0% |
! | TTGCAAGGTGTTTGATCTCA+AGG | + | chr8_2:63123386-63123405 | None:intergenic | 40.0% |
GTTGAAGATGCACTCTTAGT+AGG | + | chr8_2:63123429-63123448 | None:intergenic | 40.0% | |
TACTGAAGGAGTTTCAAGCT+TGG | - | chr8_2:63123458-63123477 | Msa1260950:intron | 40.0% | |
TTTCAAAGGGGTTCCAAATG+AGG | + | chr8_2:63123707-63123726 | None:intergenic | 40.0% | |
! | TTGGAACCCCTTTGAAAATG+TGG | - | chr8_2:63123710-63123729 | Msa1260950:CDS | 40.0% |
GAAAATGTGGAAGAATCTGC+AGG | - | chr8_2:63123723-63123742 | Msa1260950:CDS | 40.0% | |
AGCTTCACATGATCAAAGGA+AGG | + | chr8_2:63123780-63123799 | None:intergenic | 40.0% | |
TCATGTGAAGCTGATTGATG+AGG | - | chr8_2:63123788-63123807 | Msa1260950:CDS | 40.0% | |
AGAGAGAAAAAGGAAGAGAG+AGG | - | chr8_2:63124052-63124071 | Msa1260950:CDS | 40.0% | |
!!! | CCCAAGTTTTTTCCATGGAT+TGG | + | chr8_2:63124232-63124251 | None:intergenic | 40.0% |
ATCCATGGAAAAAACTTGGG+AGG | - | chr8_2:63124232-63124251 | Msa1260950:CDS | 40.0% | |
! | AAAGGAGGTGGTGATGATAA+GGG | + | chr8_2:63124301-63124320 | None:intergenic | 40.0% |
! | AAAAGGAGGTGGTGATGATA+AGG | + | chr8_2:63124302-63124321 | None:intergenic | 40.0% |
TCTGTTCCTGACCTTGAAAT+TGG | - | chr8_2:63124496-63124515 | Msa1260950:CDS | 40.0% | |
CTTGTACCAATTTCAAGGTC+AGG | + | chr8_2:63124505-63124524 | None:intergenic | 40.0% | |
TCAACAAACAGTTCCCTCAA+TGG | - | chr8_2:63122844-63122863 | Msa1260950:three_prime_UTR | 40.0% | |
AAGAAAGAGAAAGGAGGAAG+AGG | + | chr8_2:63122964-63122983 | None:intergenic | 40.0% | |
! | ATTTGGTGGCTGTCTTGAAA+GGG | + | chr8_2:63123018-63123037 | None:intergenic | 40.0% |
CATGTTGTTGGAGGAAGATT+TGG | + | chr8_2:63123035-63123054 | None:intergenic | 40.0% | |
!! | ACAGTACTGATCATCATCAG+CGG | - | chr8_2:63123100-63123119 | Msa1260950:exon | 40.0% |
TGGTAAAGGCAAAACTGTAG+TGG | - | chr8_2:63123173-63123192 | Msa1260950:intron | 40.0% | |
! | TGTCACTTGAAGTTGCAAAG+AGG | - | chr8_2:63123286-63123305 | Msa1260950:intron | 40.0% |
GTTTGATCTCAAGGTTGGAT+TGG | + | chr8_2:63123377-63123396 | None:intergenic | 40.0% | |
! | AAGGTGTTTGATCTCAAGGT+TGG | + | chr8_2:63123382-63123401 | None:intergenic | 40.0% |
! | TTGCAAGGTGTTTGATCTCA+AGG | + | chr8_2:63123386-63123405 | None:intergenic | 40.0% |
GTTGAAGATGCACTCTTAGT+AGG | + | chr8_2:63123429-63123448 | None:intergenic | 40.0% | |
TACTGAAGGAGTTTCAAGCT+TGG | - | chr8_2:63123458-63123477 | Msa1260950:intron | 40.0% | |
TTTCAAAGGGGTTCCAAATG+AGG | + | chr8_2:63123707-63123726 | None:intergenic | 40.0% | |
! | TTGGAACCCCTTTGAAAATG+TGG | - | chr8_2:63123710-63123729 | Msa1260950:CDS | 40.0% |
GAAAATGTGGAAGAATCTGC+AGG | - | chr8_2:63123723-63123742 | Msa1260950:CDS | 40.0% | |
AGCTTCACATGATCAAAGGA+AGG | + | chr8_2:63123780-63123799 | None:intergenic | 40.0% | |
TCATGTGAAGCTGATTGATG+AGG | - | chr8_2:63123788-63123807 | Msa1260950:CDS | 40.0% | |
AGAGAGAAAAAGGAAGAGAG+AGG | - | chr8_2:63124052-63124071 | Msa1260950:CDS | 40.0% | |
!!! | CCCAAGTTTTTTCCATGGAT+TGG | + | chr8_2:63124232-63124251 | None:intergenic | 40.0% |
ATCCATGGAAAAAACTTGGG+AGG | - | chr8_2:63124232-63124251 | Msa1260950:CDS | 40.0% | |
! | AAAGGAGGTGGTGATGATAA+GGG | + | chr8_2:63124301-63124320 | None:intergenic | 40.0% |
! | AAAAGGAGGTGGTGATGATA+AGG | + | chr8_2:63124302-63124321 | None:intergenic | 40.0% |
TCTGTTCCTGACCTTGAAAT+TGG | - | chr8_2:63124496-63124515 | Msa1260950:CDS | 40.0% | |
CTTGTACCAATTTCAAGGTC+AGG | + | chr8_2:63124505-63124524 | None:intergenic | 40.0% | |
AGAAAGGAGGAAGAGGAAAG+GGG | + | chr8_2:63122957-63122976 | None:intergenic | 45.0% | |
GAGAAAGGAGGAAGAGGAAA+GGG | + | chr8_2:63122958-63122977 | None:intergenic | 45.0% | |
AGAGAAAGGAGGAAGAGGAA+AGG | + | chr8_2:63122959-63122978 | None:intergenic | 45.0% | |
!! | GATTTGGTGGCTGTCTTGAA+AGG | + | chr8_2:63123019-63123038 | None:intergenic | 45.0% |
GTTGTTGGAGGAAGATTTGG+TGG | + | chr8_2:63123032-63123051 | None:intergenic | 45.0% | |
CAACAGGTGGATGATGAAGT+TGG | + | chr8_2:63123068-63123087 | None:intergenic | 45.0% | |
!! | CGGTTTTGATCTTGCTGTGT+CGG | + | chr8_2:63123236-63123255 | None:intergenic | 45.0% |
AGCAAGATCAAAACCGCGAA+AGG | - | chr8_2:63123240-63123259 | Msa1260950:intron | 45.0% | |
TCAAAACCGCGAAAGGACTA+AGG | - | chr8_2:63123247-63123266 | Msa1260950:intron | 45.0% | |
CAAAACCGCGAAAGGACTAA+GGG | - | chr8_2:63123248-63123267 | Msa1260950:intron | 45.0% | |
AAGCAAGCAAAACAGTGGAC+TGG | - | chr8_2:63123343-63123362 | Msa1260950:intron | 45.0% | |
CAAGAGAAAGGGCAAGAGAA+AGG | - | chr8_2:63123598-63123617 | Msa1260950:CDS | 45.0% | |
! | GGTACACATCAGAGTACTCA+AGG | - | chr8_2:63123744-63123763 | Msa1260950:CDS | 45.0% |
!!! | TGCCTCCCAAGTTTTTTCCA+TGG | + | chr8_2:63124237-63124256 | None:intergenic | 45.0% |
! | GATGATAAGGGGTGCAAGTA+CGG | + | chr8_2:63124289-63124308 | None:intergenic | 45.0% |
! | AAGGAGGTGGTGATGATAAG+GGG | + | chr8_2:63124300-63124319 | None:intergenic | 45.0% |
TGACTGACACAAAAAGGAGG+TGG | + | chr8_2:63124313-63124332 | None:intergenic | 45.0% | |
! | ACCTCCTTTTTGTGTCAGTC+AGG | - | chr8_2:63124312-63124331 | Msa1260950:CDS | 45.0% |
TGAGCCTGACTGACACAAAA+AGG | + | chr8_2:63124319-63124338 | None:intergenic | 45.0% | |
AGAAAGGAGGAAGAGGAAAG+GGG | + | chr8_2:63122957-63122976 | None:intergenic | 45.0% | |
GAGAAAGGAGGAAGAGGAAA+GGG | + | chr8_2:63122958-63122977 | None:intergenic | 45.0% | |
AGAGAAAGGAGGAAGAGGAA+AGG | + | chr8_2:63122959-63122978 | None:intergenic | 45.0% | |
!! | GATTTGGTGGCTGTCTTGAA+AGG | + | chr8_2:63123019-63123038 | None:intergenic | 45.0% |
GTTGTTGGAGGAAGATTTGG+TGG | + | chr8_2:63123032-63123051 | None:intergenic | 45.0% | |
CAACAGGTGGATGATGAAGT+TGG | + | chr8_2:63123068-63123087 | None:intergenic | 45.0% | |
!! | CGGTTTTGATCTTGCTGTGT+CGG | + | chr8_2:63123236-63123255 | None:intergenic | 45.0% |
AGCAAGATCAAAACCGCGAA+AGG | - | chr8_2:63123240-63123259 | Msa1260950:intron | 45.0% | |
TCAAAACCGCGAAAGGACTA+AGG | - | chr8_2:63123247-63123266 | Msa1260950:intron | 45.0% | |
CAAAACCGCGAAAGGACTAA+GGG | - | chr8_2:63123248-63123267 | Msa1260950:intron | 45.0% | |
AAGCAAGCAAAACAGTGGAC+TGG | - | chr8_2:63123343-63123362 | Msa1260950:intron | 45.0% | |
CAAGAGAAAGGGCAAGAGAA+AGG | - | chr8_2:63123598-63123617 | Msa1260950:CDS | 45.0% | |
! | GGTACACATCAGAGTACTCA+AGG | - | chr8_2:63123744-63123763 | Msa1260950:CDS | 45.0% |
!!! | TGCCTCCCAAGTTTTTTCCA+TGG | + | chr8_2:63124237-63124256 | None:intergenic | 45.0% |
! | GATGATAAGGGGTGCAAGTA+CGG | + | chr8_2:63124289-63124308 | None:intergenic | 45.0% |
! | AAGGAGGTGGTGATGATAAG+GGG | + | chr8_2:63124300-63124319 | None:intergenic | 45.0% |
TGACTGACACAAAAAGGAGG+TGG | + | chr8_2:63124313-63124332 | None:intergenic | 45.0% | |
! | ACCTCCTTTTTGTGTCAGTC+AGG | - | chr8_2:63124312-63124331 | Msa1260950:CDS | 45.0% |
TGAGCCTGACTGACACAAAA+AGG | + | chr8_2:63124319-63124338 | None:intergenic | 45.0% | |
GAAAGGAGGAAGAGGAAAGG+GGG | + | chr8_2:63122956-63122975 | None:intergenic | 50.0% | |
AATCTTCTTCCTGCAGCTGC+TGG | - | chr8_2:63123153-63123172 | Msa1260950:CDS | 50.0% | |
GCCTGACTGACACAAAAAGG+AGG | + | chr8_2:63124316-63124335 | None:intergenic | 50.0% | |
GAAAGGAGGAAGAGGAAAGG+GGG | + | chr8_2:63122956-63122975 | None:intergenic | 50.0% | |
AATCTTCTTCCTGCAGCTGC+TGG | - | chr8_2:63123153-63123172 | Msa1260950:CDS | 50.0% | |
GCCTGACTGACACAAAAAGG+AGG | + | chr8_2:63124316-63124335 | None:intergenic | 50.0% | |
CTTCCTGCAGCTGCTGGTAA+AGG | - | chr8_2:63123159-63123178 | Msa1260950:CDS | 55.0% | |
TTGCCTTTACCAGCAGCTGC+AGG | + | chr8_2:63123165-63123184 | None:intergenic | 55.0% | |
CCGATCCCTTAGTCCTTTCG+CGG | + | chr8_2:63123256-63123275 | None:intergenic | 55.0% | |
CCGCGAAAGGACTAAGGGAT+CGG | - | chr8_2:63123253-63123272 | Msa1260950:intron | 55.0% | |
CTTCCTGCAGCTGCTGGTAA+AGG | - | chr8_2:63123159-63123178 | Msa1260950:CDS | 55.0% | |
TTGCCTTTACCAGCAGCTGC+AGG | + | chr8_2:63123165-63123184 | None:intergenic | 55.0% | |
CCGATCCCTTAGTCCTTTCG+CGG | + | chr8_2:63123256-63123275 | None:intergenic | 55.0% | |
CCGCGAAAGGACTAAGGGAT+CGG | - | chr8_2:63123253-63123272 | Msa1260950:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 63122838 | 63124549 | 63122838 | ID=Msa1260950;Name=Msa1260950 |
chr8_2 | mRNA | 63122838 | 63124549 | 63122838 | ID=Msa1260950-mRNA-1;Parent=Msa1260950;Name=Msa1260950-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0.5|1|0|0|2|271|379 |
chr8_2 | exon | 63122838 | 63123178 | 63122838 | ID=Msa1260950-mRNA-1:exon:20158;Parent=Msa1260950-mRNA-1 |
chr8_2 | exon | 63123480 | 63124549 | 63123480 | ID=Msa1260950-mRNA-1:exon:20157;Parent=Msa1260950-mRNA-1 |
chr8_2 | CDS | 63123480 | 63124549 | 63123480 | ID=Msa1260950-mRNA-1:cds;Parent=Msa1260950-mRNA-1 |
chr8_2 | CDS | 63123109 | 63123178 | 63123109 | ID=Msa1260950-mRNA-1:cds;Parent=Msa1260950-mRNA-1 |
chr8_2 | three_prime_UTR | 63122838 | 63123108 | 63122838 | ID=Msa1260950-mRNA-1:three_prime_utr;Parent=Msa1260950-mRNA-1 |
Gene Sequence |
Protein sequence |