AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1260950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1260950 MtrunA17_Chr4g0062691 95.902 366 11 4 1 363 1 365 0.0 707
Msa1260950 MtrunA17_Chr6g0456881 40.588 170 86 3 109 265 105 272 6.37e-28 113
Msa1260950 MtrunA17_Chr7g0220931 64.516 62 22 0 132 193 122 183 1.55e-20 92.0
Msa1260950 MtrunA17_Chr1g0205131 55.696 79 33 1 118 194 95 173 8.00e-20 90.1
Msa1260950 MtrunA17_Chr8g0376571 35.329 167 83 6 126 267 57 223 3.01e-17 83.2
Msa1260950 MtrunA17_Chr8g0360441 44.898 98 52 2 108 204 31 127 3.08e-16 79.7
Msa1260950 MtrunA17_Chr7g0219461 31.356 236 124 9 131 357 58 264 7.64e-16 78.2
Msa1260950 MtrunA17_Chr2g0316391 52.239 67 31 1 123 189 14 79 1.81e-14 73.2
Msa1260950 MtrunA17_Chr6g0454781 56.897 58 25 0 131 188 50 107 2.45e-14 73.6
Msa1260950 MtrunA17_Chr4g0040921 48.438 64 33 0 126 189 18 81 4.59e-14 72.4
Msa1260950 MtrunA17_Chr3g0086961 32.394 142 88 2 131 267 58 196 7.75e-14 72.4
Msa1260950 MtrunA17_Chr2g0325171 47.619 63 33 0 126 188 20 82 1.23e-13 71.2
Msa1260950 MtrunA17_Chr4g0061561 48.276 58 30 0 131 188 58 115 6.98e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1260950 AT3G18550.1 31.250 304 160 9 1 262 5 301 2.68e-24 103
Msa1260950 AT3G18550.4 31.250 304 160 9 1 262 5 301 2.68e-24 103
Msa1260950 AT3G18550.3 31.250 304 160 9 1 262 5 301 3.06e-24 103
Msa1260950 AT3G18550.2 36.058 208 109 5 1 189 5 207 5.81e-24 102
Msa1260950 AT1G67260.2 51.546 97 39 1 107 195 56 152 2.32e-23 100
Msa1260950 AT1G67260.3 51.546 97 39 1 107 195 56 152 2.32e-23 100
Msa1260950 AT1G67260.1 51.546 97 39 1 107 195 56 152 2.73e-23 100
Msa1260950 AT1G68800.1 63.768 69 24 1 121 188 102 170 6.90e-22 95.9
Msa1260950 AT1G68800.2 63.768 69 24 1 121 188 102 170 7.05e-22 96.3
Msa1260950 AT4G18390.1 35.519 183 78 6 126 292 38 196 2.67e-19 88.6
Msa1260950 AT4G18390.2 35.519 183 78 6 126 292 38 196 2.67e-19 88.6
Msa1260950 AT3G15030.2 43.878 98 54 1 93 189 7 104 2.27e-16 80.5
Msa1260950 AT3G15030.4 43.878 98 54 1 93 189 7 104 2.27e-16 80.5
Msa1260950 AT3G15030.3 43.878 98 54 1 93 189 7 104 2.27e-16 80.5
Msa1260950 AT3G15030.1 43.878 98 54 1 93 189 7 104 2.27e-16 80.5
Msa1260950 AT1G53230.1 48.148 81 41 1 111 190 29 109 4.35e-15 76.6
Msa1260950 AT1G53230.2 48.148 81 41 1 111 190 29 109 4.35e-15 76.6
Msa1260950 AT1G30210.2 36.879 141 65 3 126 266 46 162 1.07e-14 74.7
Msa1260950 AT1G30210.1 36.879 141 65 3 126 266 46 162 1.07e-14 74.7
Msa1260950 AT2G31070.1 43.750 80 44 1 110 188 8 87 3.53e-13 70.5
Msa1260950 AT3G02150.1 51.724 58 28 0 131 188 75 132 9.94e-13 68.6
Msa1260950 AT3G02150.2 51.724 58 28 0 131 188 75 132 2.17e-12 68.2
Msa1260950 AT5G60970.1 48.276 58 30 0 131 188 64 121 6.91e-12 66.6

Find 75 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATATCATCAGGATAATT+AGG 0.171473 8_2:+63124374 None:intergenic
TTATTTCTTTCCTTTCCTTT+TGG 0.203378 8_2:-63122999 Msa1260950:three_prime_UTR
GAGAAGAAATAGTACTAATA+AGG 0.277919 8_2:-63123832 Msa1260950:CDS
GAGAAAGGAGGAAGAGGAAA+GGG 0.310050 8_2:+63124410 None:intergenic
TCTGTTCCTGACCTTGAAAT+TGG 0.315222 8_2:-63122869 Msa1260950:three_prime_UTR
TTGCTTTCAAAGGAACAAAA+AGG 0.336731 8_2:+63124470 None:intergenic
GTGAGGTATCTTCAGAATTT+CGG 0.343155 8_2:-63122965 Msa1260950:three_prime_UTR
CATGTTGTTGGAGGAAGATT+TGG 0.344830 8_2:+63124333 None:intergenic
TTTGGTCTTCAAGATATGTT+AGG 0.353164 8_2:-63124053 Msa1260950:CDS
TGAGCCTGACTGACACAAAA+AGG 0.360607 8_2:+63123049 None:intergenic
AGAAAGGAGGAAGAGGAAAG+GGG 0.382698 8_2:+63124411 None:intergenic
AAAGGAGGTGGTGATGATAA+GGG 0.399159 8_2:+63123067 None:intergenic
TGCTAGGTTATTTCCATTGA+GGG 0.401156 8_2:+63124508 None:intergenic
GTAAACTTGTACCAATTTCA+AGG 0.404054 8_2:+63122858 None:intergenic
CAATATCATCAGGATAATTA+GGG 0.427407 8_2:+63124375 None:intergenic
AAAAGGAGGTGGTGATGATA+AGG 0.428540 8_2:+63123066 None:intergenic
AGAGAAAGGAGGAAGAGGAA+AGG 0.429249 8_2:+63124409 None:intergenic
TTGCAAGGTGTTTGATCTCA+AGG 0.429585 8_2:+63123982 None:intergenic
GCTTTGATTGTTGAGTTTGA+AGG 0.434606 8_2:+63124242 None:intergenic
CTTCCTGCAGCTGCTGGTAA+AGG 0.436015 8_2:-63124206 Msa1260950:CDS
TCAAGCTTGGATAATGAAGT+TGG 0.437838 8_2:-63123894 Msa1260950:CDS
GTTGAAGATGCACTCTTAGT+AGG 0.445865 8_2:+63123939 None:intergenic
TTTCAAAGGGGTTCCAAATG+AGG 0.447560 8_2:+63123661 None:intergenic
CTTTGTTCATTATGAGCAAA+TGG 0.450640 8_2:-63123494 Msa1260950:CDS
TTGAGAGAATTGAACATCAT+AGG 0.458304 8_2:+63123465 None:intergenic
GGAAATCAACATCATGTTGT+TGG 0.463207 8_2:+63124321 None:intergenic
TCAAAACCGCGAAAGGACTA+AGG 0.463298 8_2:-63124118 Msa1260950:CDS
CTTGTACCAATTTCAAGGTC+AGG 0.464630 8_2:+63122863 None:intergenic
CAAGAGAAAGGGCAAGAGAA+AGG 0.468363 8_2:-63123767 Msa1260950:CDS
CTGTTGTTATTCATCACAAC+AGG 0.468470 8_2:+63124284 None:intergenic
GATTTGGTGGCTGTCTTGAA+AGG 0.472274 8_2:+63124349 None:intergenic
GAAAGGAGGAAGAGGAAAGG+GGG 0.475237 8_2:+63124412 None:intergenic
GGGAATTGAAAGAAAGAGAA+AGG 0.476940 8_2:+63124395 None:intergenic
AAGAGTGCATTCAATTCTAT+AGG 0.477613 8_2:-63123801 Msa1260950:CDS
CCGATCCCTTAGTCCTTTCG+CGG 0.487376 8_2:+63124112 None:intergenic
AATCTTCTTCCTGCAGCTGC+TGG 0.488028 8_2:-63124212 Msa1260950:CDS
GTTTGATCTCAAGGTTGGAT+TGG 0.498353 8_2:+63123991 None:intergenic
TTGGAACCCCTTTGAAAATG+TGG 0.498644 8_2:-63123655 Msa1260950:CDS
TCAACAAACAGTTCCCTCAA+TGG 0.498770 8_2:-63124521 Msa1260950:CDS
AAGAAAGAGAAAGGAGGAAG+AGG 0.499947 8_2:+63124404 None:intergenic
CAACAGGTGGATGATGAAGT+TGG 0.500835 8_2:+63124300 None:intergenic
TGAAAGGGATCAATATCATC+AGG 0.511469 8_2:+63124365 None:intergenic
GTTGTTGGAGGAAGATTTGG+TGG 0.511656 8_2:+63124336 None:intergenic
TGAACAATTTCACCAATCCA+TGG 0.514462 8_2:-63123148 Msa1260950:CDS
TCAAAGCAATACAATGAAGA+AGG 0.515193 8_2:-63123696 Msa1260950:CDS
GATGATAAGGGGTGCAAGTA+CGG 0.515892 8_2:+63123079 None:intergenic
ATGCTAGGTTATTTCCATTG+AGG 0.517513 8_2:+63124507 None:intergenic
TCACCACATAACATTCCAAA+AGG 0.520050 8_2:+63122984 None:intergenic
TACTGAAGGAGTTTCAAGCT+TGG 0.530351 8_2:-63123907 Msa1260950:CDS
TGAAGTTGAGTTGCTTTCAA+AGG 0.532484 8_2:+63124460 None:intergenic
AACAGAAACAAACAAGAAAG+TGG 0.538067 8_2:+63122886 None:intergenic
AAGGTGTTTGATCTCAAGGT+TGG 0.545535 8_2:+63123986 None:intergenic
TTGCCTTTACCAGCAGCTGC+AGG 0.547785 8_2:+63124203 None:intergenic
GAAAATGTGGAAGAATCTGC+AGG 0.550929 8_2:-63123642 Msa1260950:CDS
ATTTGGTGGCTGTCTTGAAA+GGG 0.555885 8_2:+63124350 None:intergenic
GTGATTTAGAGGAAAATGCT+AGG 0.566051 8_2:+63124492 None:intergenic
AGCAAGATCAAAACCGCGAA+AGG 0.567602 8_2:-63124125 Msa1260950:CDS
AATCAACATCATGTTGTTGG+AGG 0.575800 8_2:+63124324 None:intergenic
CAAAACCGCGAAAGGACTAA+GGG 0.576240 8_2:-63124117 Msa1260950:CDS
TCAACTTCTGAATGTACTGA+AGG 0.578330 8_2:-63123921 Msa1260950:CDS
AATCAGCTTCACATGATCAA+AGG 0.583940 8_2:+63123584 None:intergenic
AAGCAAGCAAAACAGTGGAC+TGG 0.594986 8_2:-63124022 Msa1260950:CDS
GGTACACATCAGAGTACTCA+AGG 0.596783 8_2:-63123621 Msa1260950:CDS
CCGCGAAAGGACTAAGGGAT+CGG 0.598651 8_2:-63124112 Msa1260950:CDS
TTGTTATTCATCACAACAGG+TGG 0.601473 8_2:+63124287 None:intergenic
TGTCACTTGAAGTTGCAAAG+AGG 0.614161 8_2:-63124079 Msa1260950:CDS
ACATAACATTCCAAAAGGAA+AGG 0.614793 8_2:+63122989 None:intergenic
AATTGAAAGAAAGAGAAAGG+AGG 0.616668 8_2:+63124398 None:intergenic
AGCTTCACATGATCAAAGGA+AGG 0.617475 8_2:+63123588 None:intergenic
TGGTAAAGGCAAAACTGTAG+TGG 0.630471 8_2:-63124192 Msa1260950:CDS
AAGGAGGTGGTGATGATAAG+GGG 0.632930 8_2:+63123068 None:intergenic
GGTAGCATGTTAATTAGATG+CGG 0.636554 8_2:+63123100 None:intergenic
AGAGAATTGAACATCATAGG+TGG 0.646080 8_2:+63123468 None:intergenic
TCATGTGAAGCTGATTGATG+AGG 0.717288 8_2:-63123577 Msa1260950:CDS
ACAGTACTGATCATCATCAG+CGG 0.729484 8_2:-63124265 Msa1260950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGATATTTTGACAACTTT+TGG + chr8_2:63124114-63124133 None:intergenic 20.0%
!!! AATGATATTTTGACAACTTT+TGG + chr8_2:63124114-63124133 None:intergenic 20.0%
! CAATATCATCAGGATAATTA+GGG + chr8_2:63122993-63123012 None:intergenic 25.0%
! TCAATATCATCAGGATAATT+AGG + chr8_2:63122994-63123013 None:intergenic 25.0%
!!! ATAACAAGTTTTTGTTGTTG+TGG + chr8_2:63123510-63123529 None:intergenic 25.0%
! GAGAAGAAATAGTACTAATA+AGG - chr8_2:63123533-63123552 Msa1260950:CDS 25.0%
! AAGGACAAAAGAAAAAAAGA+AGG - chr8_2:63123617-63123636 Msa1260950:CDS 25.0%
! GAATAAAAACTAACCTCATT+TGG - chr8_2:63123691-63123710 Msa1260950:CDS 25.0%
!! AATTTGAACTTACTTGTTGA+AGG + chr8_2:63123929-63123948 None:intergenic 25.0%
! TTACTCTATATGTATATGCA+TGG + chr8_2:63123954-63123973 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG + chr8_2:63124017-63124036 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr8_2:63124016-63124035 Msa1260950:CDS 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr8_2:63124029-63124048 Msa1260950:CDS 25.0%
!!! TTATTTCTTTCCTTTCCTTT+TGG - chr8_2:63124366-63124385 Msa1260950:CDS 25.0%
! CAATATCATCAGGATAATTA+GGG + chr8_2:63122993-63123012 None:intergenic 25.0%
! TCAATATCATCAGGATAATT+AGG + chr8_2:63122994-63123013 None:intergenic 25.0%
!!! ATAACAAGTTTTTGTTGTTG+TGG + chr8_2:63123510-63123529 None:intergenic 25.0%
! GAGAAGAAATAGTACTAATA+AGG - chr8_2:63123533-63123552 Msa1260950:CDS 25.0%
! AAGGACAAAAGAAAAAAAGA+AGG - chr8_2:63123617-63123636 Msa1260950:CDS 25.0%
! GAATAAAAACTAACCTCATT+TGG - chr8_2:63123691-63123710 Msa1260950:CDS 25.0%
!! AATTTGAACTTACTTGTTGA+AGG + chr8_2:63123929-63123948 None:intergenic 25.0%
! TTACTCTATATGTATATGCA+TGG + chr8_2:63123954-63123973 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG + chr8_2:63124017-63124036 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr8_2:63124016-63124035 Msa1260950:CDS 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr8_2:63124029-63124048 Msa1260950:CDS 25.0%
!!! TTATTTCTTTCCTTTCCTTT+TGG - chr8_2:63124366-63124385 Msa1260950:CDS 25.0%
TTGCTTTCAAAGGAACAAAA+AGG + chr8_2:63122898-63122917 None:intergenic 30.0%
AATTGAAAGAAAGAGAAAGG+AGG + chr8_2:63122970-63122989 None:intergenic 30.0%
! TCTTGCTAGATCTTTTTCTT+TGG + chr8_2:63123209-63123228 None:intergenic 30.0%
! TTTGGTCTTCAAGATATGTT+AGG - chr8_2:63123312-63123331 Msa1260950:intron 30.0%
! TAACATTTTTCTCTCTTGCA+AGG + chr8_2:63123401-63123420 None:intergenic 30.0%
! AAGAGTGCATTCAATTCTAT+AGG - chr8_2:63123564-63123583 Msa1260950:CDS 30.0%
TAGAGAAAAAGCAAGAGAAA+GGG - chr8_2:63123587-63123606 Msa1260950:CDS 30.0%
TCAAAGCAATACAATGAAGA+AGG - chr8_2:63123669-63123688 Msa1260950:CDS 30.0%
! ATTCTTCCACATTTTCAAAG+GGG + chr8_2:63123719-63123738 None:intergenic 30.0%
! GATTCTTCCACATTTTCAAA+GGG + chr8_2:63123720-63123739 None:intergenic 30.0%
! AGATTCTTCCACATTTTCAA+AGG + chr8_2:63123721-63123740 None:intergenic 30.0%
CTTTGTTCATTATGAGCAAA+TGG - chr8_2:63123871-63123890 Msa1260950:CDS 30.0%
TTGAGAGAATTGAACATCAT+AGG + chr8_2:63123903-63123922 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr8_2:63123991-63124010 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr8_2:63124042-63124061 Msa1260950:CDS 30.0%
ACATAACATTCCAAAAGGAA+AGG + chr8_2:63124379-63124398 None:intergenic 30.0%
!!! TTTCCTTTTGGAATGTTATG+TGG - chr8_2:63124378-63124397 Msa1260950:CDS 30.0%
AACAGAAACAAACAAGAAAG+TGG + chr8_2:63124482-63124501 None:intergenic 30.0%
GTAAACTTGTACCAATTTCA+AGG + chr8_2:63124510-63124529 None:intergenic 30.0%
TTGCTTTCAAAGGAACAAAA+AGG + chr8_2:63122898-63122917 None:intergenic 30.0%
AATTGAAAGAAAGAGAAAGG+AGG + chr8_2:63122970-63122989 None:intergenic 30.0%
! TCTTGCTAGATCTTTTTCTT+TGG + chr8_2:63123209-63123228 None:intergenic 30.0%
! TTTGGTCTTCAAGATATGTT+AGG - chr8_2:63123312-63123331 Msa1260950:intron 30.0%
! TAACATTTTTCTCTCTTGCA+AGG + chr8_2:63123401-63123420 None:intergenic 30.0%
! AAGAGTGCATTCAATTCTAT+AGG - chr8_2:63123564-63123583 Msa1260950:CDS 30.0%
TAGAGAAAAAGCAAGAGAAA+GGG - chr8_2:63123587-63123606 Msa1260950:CDS 30.0%
TCAAAGCAATACAATGAAGA+AGG - chr8_2:63123669-63123688 Msa1260950:CDS 30.0%
! ATTCTTCCACATTTTCAAAG+GGG + chr8_2:63123719-63123738 None:intergenic 30.0%
! GATTCTTCCACATTTTCAAA+GGG + chr8_2:63123720-63123739 None:intergenic 30.0%
! AGATTCTTCCACATTTTCAA+AGG + chr8_2:63123721-63123740 None:intergenic 30.0%
CTTTGTTCATTATGAGCAAA+TGG - chr8_2:63123871-63123890 Msa1260950:CDS 30.0%
TTGAGAGAATTGAACATCAT+AGG + chr8_2:63123903-63123922 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr8_2:63123991-63124010 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr8_2:63124042-63124061 Msa1260950:CDS 30.0%
ACATAACATTCCAAAAGGAA+AGG + chr8_2:63124379-63124398 None:intergenic 30.0%
!!! TTTCCTTTTGGAATGTTATG+TGG - chr8_2:63124378-63124397 Msa1260950:CDS 30.0%
AACAGAAACAAACAAGAAAG+TGG + chr8_2:63124482-63124501 None:intergenic 30.0%
GTAAACTTGTACCAATTTCA+AGG + chr8_2:63124510-63124529 None:intergenic 30.0%
! TGCTAGGTTATTTCCATTGA+GGG + chr8_2:63122860-63122879 None:intergenic 35.0%
! ATGCTAGGTTATTTCCATTG+AGG + chr8_2:63122861-63122880 None:intergenic 35.0%
GTGATTTAGAGGAAAATGCT+AGG + chr8_2:63122876-63122895 None:intergenic 35.0%
GGAACAAAAAGGTGATTTAG+AGG + chr8_2:63122887-63122906 None:intergenic 35.0%
! TGAAGTTGAGTTGCTTTCAA+AGG + chr8_2:63122908-63122927 None:intergenic 35.0%
GGGAATTGAAAGAAAGAGAA+AGG + chr8_2:63122973-63122992 None:intergenic 35.0%
TGAAAGGGATCAATATCATC+AGG + chr8_2:63123003-63123022 None:intergenic 35.0%
AATCAACATCATGTTGTTGG+AGG + chr8_2:63123044-63123063 None:intergenic 35.0%
GGAAATCAACATCATGTTGT+TGG + chr8_2:63123047-63123066 None:intergenic 35.0%
! TTGTTATTCATCACAACAGG+TGG + chr8_2:63123081-63123100 None:intergenic 35.0%
! CTGTTGTTATTCATCACAAC+AGG + chr8_2:63123084-63123103 None:intergenic 35.0%
GCTTTGATTGTTGAGTTTGA+AGG + chr8_2:63123126-63123145 None:intergenic 35.0%
!!! GAAGTTGCAAAGAGGTTTTT+TGG - chr8_2:63123294-63123313 Msa1260950:intron 35.0%
TGAAAAAGCAAGCAAAACAG+TGG - chr8_2:63123338-63123357 Msa1260950:intron 35.0%
TCAACTTCTGAATGTACTGA+AGG - chr8_2:63123444-63123463 Msa1260950:intron 35.0%
TCAAGCTTGGATAATGAAGT+TGG - chr8_2:63123471-63123490 Msa1260950:intron 35.0%
GTAGAGAAAAAGCAAGAGAA+AGG - chr8_2:63123586-63123605 Msa1260950:CDS 35.0%
AATCAGCTTCACATGATCAA+AGG + chr8_2:63123784-63123803 None:intergenic 35.0%
AAGCTACTCTCAAAAAGCTA+AGG - chr8_2:63123824-63123843 Msa1260950:CDS 35.0%
AGAGAATTGAACATCATAGG+TGG + chr8_2:63123900-63123919 None:intergenic 35.0%
TGAACAATTTCACCAATCCA+TGG - chr8_2:63124217-63124236 Msa1260950:CDS 35.0%
ACCAATCCATGGAAAAAACT+TGG - chr8_2:63124228-63124247 Msa1260950:CDS 35.0%
CCAATCCATGGAAAAAACTT+GGG - chr8_2:63124229-63124248 Msa1260950:CDS 35.0%
GGTAGCATGTTAATTAGATG+CGG + chr8_2:63124268-63124287 None:intergenic 35.0%
TCACCACATAACATTCCAAA+AGG + chr8_2:63124384-63124403 None:intergenic 35.0%
!!! TTTTGGAATGTTATGTGGTG+AGG - chr8_2:63124383-63124402 Msa1260950:CDS 35.0%
! GTGAGGTATCTTCAGAATTT+CGG - chr8_2:63124400-63124419 Msa1260950:CDS 35.0%
! TGCTAGGTTATTTCCATTGA+GGG + chr8_2:63122860-63122879 None:intergenic 35.0%
! ATGCTAGGTTATTTCCATTG+AGG + chr8_2:63122861-63122880 None:intergenic 35.0%
GTGATTTAGAGGAAAATGCT+AGG + chr8_2:63122876-63122895 None:intergenic 35.0%
GGAACAAAAAGGTGATTTAG+AGG + chr8_2:63122887-63122906 None:intergenic 35.0%
! TGAAGTTGAGTTGCTTTCAA+AGG + chr8_2:63122908-63122927 None:intergenic 35.0%
GGGAATTGAAAGAAAGAGAA+AGG + chr8_2:63122973-63122992 None:intergenic 35.0%
TGAAAGGGATCAATATCATC+AGG + chr8_2:63123003-63123022 None:intergenic 35.0%
AATCAACATCATGTTGTTGG+AGG + chr8_2:63123044-63123063 None:intergenic 35.0%
GGAAATCAACATCATGTTGT+TGG + chr8_2:63123047-63123066 None:intergenic 35.0%
! TTGTTATTCATCACAACAGG+TGG + chr8_2:63123081-63123100 None:intergenic 35.0%
! CTGTTGTTATTCATCACAAC+AGG + chr8_2:63123084-63123103 None:intergenic 35.0%
GCTTTGATTGTTGAGTTTGA+AGG + chr8_2:63123126-63123145 None:intergenic 35.0%
!!! GAAGTTGCAAAGAGGTTTTT+TGG - chr8_2:63123294-63123313 Msa1260950:intron 35.0%
TGAAAAAGCAAGCAAAACAG+TGG - chr8_2:63123338-63123357 Msa1260950:intron 35.0%
TCAACTTCTGAATGTACTGA+AGG - chr8_2:63123444-63123463 Msa1260950:intron 35.0%
TCAAGCTTGGATAATGAAGT+TGG - chr8_2:63123471-63123490 Msa1260950:intron 35.0%
GTAGAGAAAAAGCAAGAGAA+AGG - chr8_2:63123586-63123605 Msa1260950:CDS 35.0%
AATCAGCTTCACATGATCAA+AGG + chr8_2:63123784-63123803 None:intergenic 35.0%
AAGCTACTCTCAAAAAGCTA+AGG - chr8_2:63123824-63123843 Msa1260950:CDS 35.0%
AGAGAATTGAACATCATAGG+TGG + chr8_2:63123900-63123919 None:intergenic 35.0%
TGAACAATTTCACCAATCCA+TGG - chr8_2:63124217-63124236 Msa1260950:CDS 35.0%
ACCAATCCATGGAAAAAACT+TGG - chr8_2:63124228-63124247 Msa1260950:CDS 35.0%
CCAATCCATGGAAAAAACTT+GGG - chr8_2:63124229-63124248 Msa1260950:CDS 35.0%
GGTAGCATGTTAATTAGATG+CGG + chr8_2:63124268-63124287 None:intergenic 35.0%
TCACCACATAACATTCCAAA+AGG + chr8_2:63124384-63124403 None:intergenic 35.0%
!!! TTTTGGAATGTTATGTGGTG+AGG - chr8_2:63124383-63124402 Msa1260950:CDS 35.0%
! GTGAGGTATCTTCAGAATTT+CGG - chr8_2:63124400-63124419 Msa1260950:CDS 35.0%
TCAACAAACAGTTCCCTCAA+TGG - chr8_2:63122844-63122863 Msa1260950:three_prime_UTR 40.0%
AAGAAAGAGAAAGGAGGAAG+AGG + chr8_2:63122964-63122983 None:intergenic 40.0%
! ATTTGGTGGCTGTCTTGAAA+GGG + chr8_2:63123018-63123037 None:intergenic 40.0%
CATGTTGTTGGAGGAAGATT+TGG + chr8_2:63123035-63123054 None:intergenic 40.0%
!! ACAGTACTGATCATCATCAG+CGG - chr8_2:63123100-63123119 Msa1260950:exon 40.0%
TGGTAAAGGCAAAACTGTAG+TGG - chr8_2:63123173-63123192 Msa1260950:intron 40.0%
! TGTCACTTGAAGTTGCAAAG+AGG - chr8_2:63123286-63123305 Msa1260950:intron 40.0%
GTTTGATCTCAAGGTTGGAT+TGG + chr8_2:63123377-63123396 None:intergenic 40.0%
! AAGGTGTTTGATCTCAAGGT+TGG + chr8_2:63123382-63123401 None:intergenic 40.0%
! TTGCAAGGTGTTTGATCTCA+AGG + chr8_2:63123386-63123405 None:intergenic 40.0%
GTTGAAGATGCACTCTTAGT+AGG + chr8_2:63123429-63123448 None:intergenic 40.0%
TACTGAAGGAGTTTCAAGCT+TGG - chr8_2:63123458-63123477 Msa1260950:intron 40.0%
TTTCAAAGGGGTTCCAAATG+AGG + chr8_2:63123707-63123726 None:intergenic 40.0%
! TTGGAACCCCTTTGAAAATG+TGG - chr8_2:63123710-63123729 Msa1260950:CDS 40.0%
GAAAATGTGGAAGAATCTGC+AGG - chr8_2:63123723-63123742 Msa1260950:CDS 40.0%
AGCTTCACATGATCAAAGGA+AGG + chr8_2:63123780-63123799 None:intergenic 40.0%
TCATGTGAAGCTGATTGATG+AGG - chr8_2:63123788-63123807 Msa1260950:CDS 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG - chr8_2:63124052-63124071 Msa1260950:CDS 40.0%
!!! CCCAAGTTTTTTCCATGGAT+TGG + chr8_2:63124232-63124251 None:intergenic 40.0%
ATCCATGGAAAAAACTTGGG+AGG - chr8_2:63124232-63124251 Msa1260950:CDS 40.0%
! AAAGGAGGTGGTGATGATAA+GGG + chr8_2:63124301-63124320 None:intergenic 40.0%
! AAAAGGAGGTGGTGATGATA+AGG + chr8_2:63124302-63124321 None:intergenic 40.0%
TCTGTTCCTGACCTTGAAAT+TGG - chr8_2:63124496-63124515 Msa1260950:CDS 40.0%
CTTGTACCAATTTCAAGGTC+AGG + chr8_2:63124505-63124524 None:intergenic 40.0%
TCAACAAACAGTTCCCTCAA+TGG - chr8_2:63122844-63122863 Msa1260950:three_prime_UTR 40.0%
AAGAAAGAGAAAGGAGGAAG+AGG + chr8_2:63122964-63122983 None:intergenic 40.0%
! ATTTGGTGGCTGTCTTGAAA+GGG + chr8_2:63123018-63123037 None:intergenic 40.0%
CATGTTGTTGGAGGAAGATT+TGG + chr8_2:63123035-63123054 None:intergenic 40.0%
!! ACAGTACTGATCATCATCAG+CGG - chr8_2:63123100-63123119 Msa1260950:exon 40.0%
TGGTAAAGGCAAAACTGTAG+TGG - chr8_2:63123173-63123192 Msa1260950:intron 40.0%
! TGTCACTTGAAGTTGCAAAG+AGG - chr8_2:63123286-63123305 Msa1260950:intron 40.0%
GTTTGATCTCAAGGTTGGAT+TGG + chr8_2:63123377-63123396 None:intergenic 40.0%
! AAGGTGTTTGATCTCAAGGT+TGG + chr8_2:63123382-63123401 None:intergenic 40.0%
! TTGCAAGGTGTTTGATCTCA+AGG + chr8_2:63123386-63123405 None:intergenic 40.0%
GTTGAAGATGCACTCTTAGT+AGG + chr8_2:63123429-63123448 None:intergenic 40.0%
TACTGAAGGAGTTTCAAGCT+TGG - chr8_2:63123458-63123477 Msa1260950:intron 40.0%
TTTCAAAGGGGTTCCAAATG+AGG + chr8_2:63123707-63123726 None:intergenic 40.0%
! TTGGAACCCCTTTGAAAATG+TGG - chr8_2:63123710-63123729 Msa1260950:CDS 40.0%
GAAAATGTGGAAGAATCTGC+AGG - chr8_2:63123723-63123742 Msa1260950:CDS 40.0%
AGCTTCACATGATCAAAGGA+AGG + chr8_2:63123780-63123799 None:intergenic 40.0%
TCATGTGAAGCTGATTGATG+AGG - chr8_2:63123788-63123807 Msa1260950:CDS 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG - chr8_2:63124052-63124071 Msa1260950:CDS 40.0%
!!! CCCAAGTTTTTTCCATGGAT+TGG + chr8_2:63124232-63124251 None:intergenic 40.0%
ATCCATGGAAAAAACTTGGG+AGG - chr8_2:63124232-63124251 Msa1260950:CDS 40.0%
! AAAGGAGGTGGTGATGATAA+GGG + chr8_2:63124301-63124320 None:intergenic 40.0%
! AAAAGGAGGTGGTGATGATA+AGG + chr8_2:63124302-63124321 None:intergenic 40.0%
TCTGTTCCTGACCTTGAAAT+TGG - chr8_2:63124496-63124515 Msa1260950:CDS 40.0%
CTTGTACCAATTTCAAGGTC+AGG + chr8_2:63124505-63124524 None:intergenic 40.0%
AGAAAGGAGGAAGAGGAAAG+GGG + chr8_2:63122957-63122976 None:intergenic 45.0%
GAGAAAGGAGGAAGAGGAAA+GGG + chr8_2:63122958-63122977 None:intergenic 45.0%
AGAGAAAGGAGGAAGAGGAA+AGG + chr8_2:63122959-63122978 None:intergenic 45.0%
!! GATTTGGTGGCTGTCTTGAA+AGG + chr8_2:63123019-63123038 None:intergenic 45.0%
GTTGTTGGAGGAAGATTTGG+TGG + chr8_2:63123032-63123051 None:intergenic 45.0%
CAACAGGTGGATGATGAAGT+TGG + chr8_2:63123068-63123087 None:intergenic 45.0%
!! CGGTTTTGATCTTGCTGTGT+CGG + chr8_2:63123236-63123255 None:intergenic 45.0%
AGCAAGATCAAAACCGCGAA+AGG - chr8_2:63123240-63123259 Msa1260950:intron 45.0%
TCAAAACCGCGAAAGGACTA+AGG - chr8_2:63123247-63123266 Msa1260950:intron 45.0%
CAAAACCGCGAAAGGACTAA+GGG - chr8_2:63123248-63123267 Msa1260950:intron 45.0%
AAGCAAGCAAAACAGTGGAC+TGG - chr8_2:63123343-63123362 Msa1260950:intron 45.0%
CAAGAGAAAGGGCAAGAGAA+AGG - chr8_2:63123598-63123617 Msa1260950:CDS 45.0%
! GGTACACATCAGAGTACTCA+AGG - chr8_2:63123744-63123763 Msa1260950:CDS 45.0%
!!! TGCCTCCCAAGTTTTTTCCA+TGG + chr8_2:63124237-63124256 None:intergenic 45.0%
! GATGATAAGGGGTGCAAGTA+CGG + chr8_2:63124289-63124308 None:intergenic 45.0%
! AAGGAGGTGGTGATGATAAG+GGG + chr8_2:63124300-63124319 None:intergenic 45.0%
TGACTGACACAAAAAGGAGG+TGG + chr8_2:63124313-63124332 None:intergenic 45.0%
! ACCTCCTTTTTGTGTCAGTC+AGG - chr8_2:63124312-63124331 Msa1260950:CDS 45.0%
TGAGCCTGACTGACACAAAA+AGG + chr8_2:63124319-63124338 None:intergenic 45.0%
AGAAAGGAGGAAGAGGAAAG+GGG + chr8_2:63122957-63122976 None:intergenic 45.0%
GAGAAAGGAGGAAGAGGAAA+GGG + chr8_2:63122958-63122977 None:intergenic 45.0%
AGAGAAAGGAGGAAGAGGAA+AGG + chr8_2:63122959-63122978 None:intergenic 45.0%
!! GATTTGGTGGCTGTCTTGAA+AGG + chr8_2:63123019-63123038 None:intergenic 45.0%
GTTGTTGGAGGAAGATTTGG+TGG + chr8_2:63123032-63123051 None:intergenic 45.0%
CAACAGGTGGATGATGAAGT+TGG + chr8_2:63123068-63123087 None:intergenic 45.0%
!! CGGTTTTGATCTTGCTGTGT+CGG + chr8_2:63123236-63123255 None:intergenic 45.0%
AGCAAGATCAAAACCGCGAA+AGG - chr8_2:63123240-63123259 Msa1260950:intron 45.0%
TCAAAACCGCGAAAGGACTA+AGG - chr8_2:63123247-63123266 Msa1260950:intron 45.0%
CAAAACCGCGAAAGGACTAA+GGG - chr8_2:63123248-63123267 Msa1260950:intron 45.0%
AAGCAAGCAAAACAGTGGAC+TGG - chr8_2:63123343-63123362 Msa1260950:intron 45.0%
CAAGAGAAAGGGCAAGAGAA+AGG - chr8_2:63123598-63123617 Msa1260950:CDS 45.0%
! GGTACACATCAGAGTACTCA+AGG - chr8_2:63123744-63123763 Msa1260950:CDS 45.0%
!!! TGCCTCCCAAGTTTTTTCCA+TGG + chr8_2:63124237-63124256 None:intergenic 45.0%
! GATGATAAGGGGTGCAAGTA+CGG + chr8_2:63124289-63124308 None:intergenic 45.0%
! AAGGAGGTGGTGATGATAAG+GGG + chr8_2:63124300-63124319 None:intergenic 45.0%
TGACTGACACAAAAAGGAGG+TGG + chr8_2:63124313-63124332 None:intergenic 45.0%
! ACCTCCTTTTTGTGTCAGTC+AGG - chr8_2:63124312-63124331 Msa1260950:CDS 45.0%
TGAGCCTGACTGACACAAAA+AGG + chr8_2:63124319-63124338 None:intergenic 45.0%
GAAAGGAGGAAGAGGAAAGG+GGG + chr8_2:63122956-63122975 None:intergenic 50.0%
AATCTTCTTCCTGCAGCTGC+TGG - chr8_2:63123153-63123172 Msa1260950:CDS 50.0%
GCCTGACTGACACAAAAAGG+AGG + chr8_2:63124316-63124335 None:intergenic 50.0%
GAAAGGAGGAAGAGGAAAGG+GGG + chr8_2:63122956-63122975 None:intergenic 50.0%
AATCTTCTTCCTGCAGCTGC+TGG - chr8_2:63123153-63123172 Msa1260950:CDS 50.0%
GCCTGACTGACACAAAAAGG+AGG + chr8_2:63124316-63124335 None:intergenic 50.0%
CTTCCTGCAGCTGCTGGTAA+AGG - chr8_2:63123159-63123178 Msa1260950:CDS 55.0%
TTGCCTTTACCAGCAGCTGC+AGG + chr8_2:63123165-63123184 None:intergenic 55.0%
CCGATCCCTTAGTCCTTTCG+CGG + chr8_2:63123256-63123275 None:intergenic 55.0%
CCGCGAAAGGACTAAGGGAT+CGG - chr8_2:63123253-63123272 Msa1260950:intron 55.0%
CTTCCTGCAGCTGCTGGTAA+AGG - chr8_2:63123159-63123178 Msa1260950:CDS 55.0%
TTGCCTTTACCAGCAGCTGC+AGG + chr8_2:63123165-63123184 None:intergenic 55.0%
CCGATCCCTTAGTCCTTTCG+CGG + chr8_2:63123256-63123275 None:intergenic 55.0%
CCGCGAAAGGACTAAGGGAT+CGG - chr8_2:63123253-63123272 Msa1260950:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 63122838 63124549 63122838 ID=Msa1260950;Name=Msa1260950
chr8_2 mRNA 63122838 63124549 63122838 ID=Msa1260950-mRNA-1;Parent=Msa1260950;Name=Msa1260950-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0.5|1|0|0|2|271|379
chr8_2 exon 63122838 63123178 63122838 ID=Msa1260950-mRNA-1:exon:20158;Parent=Msa1260950-mRNA-1
chr8_2 exon 63123480 63124549 63123480 ID=Msa1260950-mRNA-1:exon:20157;Parent=Msa1260950-mRNA-1
chr8_2 CDS 63123480 63124549 63123480 ID=Msa1260950-mRNA-1:cds;Parent=Msa1260950-mRNA-1
chr8_2 CDS 63123109 63123178 63123109 ID=Msa1260950-mRNA-1:cds;Parent=Msa1260950-mRNA-1
chr8_2 three_prime_UTR 63122838 63123108 63122838 ID=Msa1260950-mRNA-1:three_prime_utr;Parent=Msa1260950-mRNA-1
Gene Sequence

>Msa1260950

ATGTATTCAACAAACAGTTCCCTCAATGGAAATAACCTAGCATTTTCCTCTAAATCACCTTTTTGTTCCTTTGAAAGCAACTCAACTTCATCAACAGATATTGAAAACAGTCATTCCCCCTTTCCTCTTCCTCCTTTCTCTTTCTTTCAATTCCCTAATTATCCTGATGATATTGATCCCTTTCAAGACAGCCACCAAATCTTCCTCCAACAACATGATGTTGATTTCCAACTTCATCATCCACCTGTTGTGATGAATAACAACAGTACTGATCATCATCAGCGGCCTTCAAACTCAACAATCAAAGCTAACAACAATCTTCTTCCTGCAGCTGCTGGTAAAGGCAAAACTGTAGTGGATCAGCAGATCCAAAGAAAAAGATCTAGCAAGAGAGACCGACACAGCAAGATCAAAACCGCGAAAGGACTAAGGGATCGGAGAATGAGATTGTCACTTGAAGTTGCAAAGAGGTTTTTTGGTCTTCAAGATATGTTAGGCTTTGAAAAAGCAAGCAAAACAGTGGACTGGTTGCTCAACCAATCCAACCTTGAGATCAAACACCTTGCAAGAGAGAAAAATGTTAATTTTCCTACTAAGAGTGCATCTTCAACTTCTGAATGTACTGAAGGAGTTTCAAGCTTGGATAATGAAGTTGGAAATCAAGAAGAACCACAACAACAAAAACTTGTTATGAAGAGAAGAAATAGTACTAATAAGGTTTGTAGAAAGAGTGCATTCAATTCTATAGGTAGAGAAAAAGCAAGAGAAAGGGCAAGAGAAAGGACAAAAGAAAAAAAGAAGGCTAGAACATCACTAGTTGATGAATCAAATTCAAAGCAATACAATGAAGAAGGAATAAAAACTAACCTCATTTGGAACCCCTTTGAAAATGTGGAAGAATCTGCAGGTACACATCAGAGTACTCAAGGTGTGAATCATCCTTCCTTTGATCATGTGAAGCTGATTGATGAGGCTGAAGTAGAAACAAGCTACTCTCAAAAAGCTAAGGAACAACATTCAGATGAAGAAAATTCTTTGTTCATTATGAGCAAATGGAGTCCACCTATGATCATCAATTTGAACAATTTCACCAATCCATGGAAAAAACTTGGGAGGCATACAACAACCGCATCTAATTAA

Protein sequence

>Msa1260950

MYSTNSSLNGNNLAFSSKSPFCSFESNSTSSTDIENSHSPFPLPPFSFFQFPNYPDDIDPFQDSHQIFLQQHDVDFQLHHPPVVMNNNSTDHHQRPSNSTIKANNNLLPAAAGKGKTVVDQQIQRKRSSKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVDWLLNQSNLEIKHLAREKNVNFPTKSASSTSECTEGVSSLDNEVGNQEEPQQQKLVMKRRNSTNKVCRKSAFNSIGREKARERARERTKEKKKARTSLVDESNSKQYNEEGIKTNLIWNPFENVEESAGTHQSTQGVNHPSFDHVKLIDEAEVETSYSQKAKEQHSDEENSLFIMSKWSPPMIINLNNFTNPWKKLGRHTTTASN*