Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335060 | XP_013460228.1 | 97.527 | 283 | 3 | 1 | 1 | 279 | 249 | 531 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335060 | sp|Q8L7Y9|NPC1_ARATH | 78.853 | 279 | 54 | 2 | 6 | 279 | 255 | 533 | 1.73e-161 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335060 | A0A072UWP8 | 97.527 | 283 | 3 | 1 | 1 | 279 | 249 | 531 | 0.0 | 573 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1335060 | Msa1419970 | 0.804689 | 1.914965e-49 | -8.615850e-47 |
| Msa0539770 | Msa1335060 | 0.802878 | 4.551062e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335060 | MtrunA17_Chr3g0104681 | 97.527 | 283 | 3 | 1 | 1 | 279 | 249 | 531 | 0.0 | 573 |
| Msa1335060 | MtrunA17_Chr3g0093341 | 64.158 | 279 | 92 | 5 | 2 | 274 | 99 | 375 | 1.66e-120 | 349 |
| Msa1335060 | MtrunA17_Chr3g0132121 | 59.489 | 274 | 105 | 3 | 1 | 269 | 244 | 516 | 3.17e-112 | 333 |
| Msa1335060 | MtrunA17_Chr8g0337991 | 59.410 | 271 | 102 | 5 | 1 | 266 | 238 | 505 | 2.20e-106 | 318 |
| Msa1335060 | MtrunA17_Chr8g0338041 | 60.924 | 238 | 85 | 5 | 25 | 257 | 5 | 239 | 3.14e-97 | 286 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335060 | AT1G07230.1 | 78.853 | 279 | 54 | 2 | 6 | 279 | 255 | 533 | 1.76e-162 | 462 |
| Msa1335060 | AT3G48610.1 | 64.207 | 271 | 91 | 3 | 1 | 266 | 248 | 517 | 1.42e-119 | 352 |
| Msa1335060 | AT2G26870.1 | 61.993 | 271 | 96 | 4 | 2 | 266 | 243 | 512 | 1.60e-116 | 344 |
| Msa1335060 | AT3G03530.1 | 60.000 | 255 | 94 | 5 | 5 | 254 | 239 | 490 | 5.30e-101 | 305 |
| Msa1335060 | AT3G03520.1 | 56.767 | 266 | 106 | 5 | 1 | 259 | 235 | 498 | 2.32e-100 | 303 |
| Msa1335060 | AT3G03540.1 | 56.489 | 262 | 106 | 5 | 1 | 257 | 234 | 492 | 1.15e-96 | 294 |
| Msa1335060 | AT3G03520.2 | 67.045 | 176 | 52 | 3 | 1 | 172 | 235 | 408 | 9.31e-82 | 252 |
Find 88 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCTCTTTGTTAGGAAAT+TGG | 0.200119 | tig0000051:-1842 | None:intergenic |
| ATTTACGAAATTAAAATTCT+TGG | 0.233491 | tig0000051:-3302 | None:intergenic |
| GTAAGATTCCAACTGCTTTC+GGG | 0.237675 | tig0000051:-3039 | None:intergenic |
| CCGAATCCGGATGGGATTAT+TGG | 0.257734 | tig0000051:+279 | Msa1335060:CDS |
| AGTAAGATTCCAACTGCTTT+CGG | 0.261842 | tig0000051:-3040 | None:intergenic |
| GAAAGACTTGAATCTTCTTT+TGG | 0.268698 | tig0000051:-2783 | None:intergenic |
| CTCAATTCCTATCCAAATAT+CGG | 0.270840 | tig0000051:+2861 | Msa1335060:CDS |
| TCATTTCGCCTTGGATTGAT+AGG | 0.313535 | tig0000051:+358 | Msa1335060:CDS |
| GAATGTTCATATTGAGAATA+TGG | 0.343966 | tig0000051:-1778 | None:intergenic |
| GTTTGTGAAGGAGGTTTATG+AGG | 0.353393 | tig0000051:+155 | Msa1335060:CDS |
| TGCTCAATAACAACATAATT+CGG | 0.375867 | tig0000051:-60 | None:intergenic |
| AAAAGCTTCTTTACTGTGGC+AGG | 0.376138 | tig0000051:-1808 | None:intergenic |
| CTTAGATTAATCTTCACTTC+AGG | 0.378193 | tig0000051:-2750 | None:intergenic |
| AAGATTAATCTAAGGCCATT+TGG | 0.382214 | tig0000051:+2759 | Msa1335060:CDS |
| TATCTTTCTTAAATATCATA+TGG | 0.386565 | tig0000051:-3136 | None:intergenic |
| CGAATCCGGATGGGATTATT+GGG | 0.387231 | tig0000051:+280 | Msa1335060:CDS |
| GGTTGTTGGTGTTCCGAATC+CGG | 0.392687 | tig0000051:+266 | Msa1335060:CDS |
| CTGAAGTGAAGATTAATCTA+AGG | 0.394932 | tig0000051:+2751 | Msa1335060:CDS |
| CCCATGCATCTCTCTTTGTT+AGG | 0.398458 | tig0000051:-1849 | None:intergenic |
| TCTTGCAGTGATTCATGAAC+CGG | 0.398754 | tig0000051:+1744 | Msa1335060:intron |
| CAACAGAAACTCTGCTGGTA+AGG | 0.399781 | tig0000051:-3010 | None:intergenic |
| CGATCAAACCTAAAATAATA+CGG | 0.402617 | tig0000051:-309 | None:intergenic |
| CCTTCGCACGATGTTGCTAT+AGG | 0.404643 | tig0000051:+126 | Msa1335060:CDS |
| CCAATAATCCCATCCGGATT+CGG | 0.405419 | tig0000051:-279 | None:intergenic |
| ACCAGCAGAGTTTCTGTTGG+AGG | 0.410016 | tig0000051:+3014 | Msa1335060:CDS |
| ACCATAACTAATCAGTTGTC+TGG | 0.415689 | tig0000051:-3204 | None:intergenic |
| ATTCGGTAACTTCCCCTTCA+AGG | 0.423256 | tig0000051:-43 | None:intergenic |
| ACCAGACAACTGATTAGTTA+TGG | 0.448111 | tig0000051:+3203 | Msa1335060:three_prime_UTR |
| GAATATGGCGTTGGACCATC+CGG | 0.456975 | tig0000051:-1763 | None:intergenic |
| AAGTCTTTCAGAATTTCAAA+TGG | 0.465884 | tig0000051:+2797 | Msa1335060:CDS |
| CATGTTCCTACGCCGGTTGT+TGG | 0.473251 | tig0000051:+252 | Msa1335060:CDS |
| GTGAAGAGGTTTCTTGAAGC+AGG | 0.479642 | tig0000051:+2930 | Msa1335060:CDS |
| TCAATTCCTATCCAAATATC+GGG | 0.482814 | tig0000051:+2862 | Msa1335060:CDS |
| GTTTAAGAGACATGCCTTGA+AGG | 0.488885 | tig0000051:+29 | None:intergenic |
| CTTACCAGCAGAGTTTCTGT+TGG | 0.489906 | tig0000051:+3011 | Msa1335060:CDS |
| GATCAAACCTAAAATAATAC+GGG | 0.493780 | tig0000051:-308 | None:intergenic |
| GGAAAGGCTGCTCTTAAAGC+TGG | 0.495046 | tig0000051:+2951 | Msa1335060:CDS |
| ACTCCTCGTGATGATTGTCC+AGG | 0.499421 | tig0000051:+1907 | Msa1335060:CDS |
| CGTTGAGCTGAGATGCTAGC+TGG | 0.499553 | tig0000051:-2827 | None:intergenic |
| GTTGGTGTTCCGAATCCGGA+TGG | 0.506518 | tig0000051:+270 | Msa1335060:CDS |
| AGGACAGAGGTTTGTGAAGG+AGG | 0.512985 | tig0000051:+146 | Msa1335060:CDS |
| TTTCGATGTGAAGGTTTCTC+CGG | 0.515737 | tig0000051:+89 | Msa1335060:CDS |
| TTTAAGAGACATGCCTTGAA+GGG | 0.517105 | tig0000051:+30 | None:intergenic |
| GAGGAAGAGTCCTCAGTGGA+AGG | 0.525716 | tig0000051:+182 | Msa1335060:intron |
| GGATTCGGAACACCAACAAC+CGG | 0.529881 | tig0000051:-264 | None:intergenic |
| ACTAATTTATTCACAACTAG+AGG | 0.545914 | tig0000051:+3060 | Msa1335060:exon |
| TGGAGGTTCCCGAAAGCAGT+TGG | 0.546637 | tig0000051:+3031 | Msa1335060:CDS |
| GAGGTTTCTTGAAGCAGGAA+AGG | 0.547860 | tig0000051:+2935 | Msa1335060:CDS |
| AACAGAAACTCTGCTGGTAA+GGG | 0.558897 | tig0000051:-3009 | None:intergenic |
| TTGGTGTTCCGAATCCGGAT+GGG | 0.558935 | tig0000051:+271 | Msa1335060:CDS |
| TCATATTGAGAATATGGCGT+TGG | 0.561607 | tig0000051:-1772 | None:intergenic |
| ACCTCCAACAGAAACTCTGC+TGG | 0.564939 | tig0000051:-3015 | None:intergenic |
| GTAGGCCCAATAATCCCATC+CGG | 0.569027 | tig0000051:-285 | None:intergenic |
| GCAGAGGTATTTCGATGTGA+AGG | 0.570165 | tig0000051:+80 | Msa1335060:CDS |
| ATTATGTTGTTATTGAGCAG+AGG | 0.573354 | tig0000051:+64 | Msa1335060:CDS |
| ACAAAGAGAGATGCATGGGC+TGG | 0.583222 | tig0000051:+1853 | Msa1335060:CDS |
| GAGTCCTCAGTGGAAGGAGA+TGG | 0.585510 | tig0000051:+188 | Msa1335060:intron |
| CCTAACAAAGAGAGATGCAT+GGG | 0.585846 | tig0000051:+1849 | Msa1335060:CDS |
| CAAGGCGAAATGAGAAAAGT+CGG | 0.591608 | tig0000051:-348 | None:intergenic |
| ATGCAGAAGATGCAGTGAAG+AGG | 0.595115 | tig0000051:+2916 | Msa1335060:CDS |
| CCTTGGATTGATAGGCGTAC+CGG | 0.598396 | tig0000051:+366 | Msa1335060:CDS |
| AACCTAAAATAATACGGGGT+AGG | 0.598428 | tig0000051:-303 | None:intergenic |
| ATTGAAAAGCTTCTTTACTG+TGG | 0.601890 | tig0000051:-1812 | None:intergenic |
| GAAACTCTGCTGGTAAGGGA+AGG | 0.611765 | tig0000051:-3005 | None:intergenic |
| TCCTAACAAAGAGAGATGCA+TGG | 0.617737 | tig0000051:+1848 | Msa1335060:CDS |
| TTAAGAGACATGCCTTGAAG+GGG | 0.620044 | tig0000051:+31 | None:intergenic |
| AATGTAAAAGTACTTCTCGA+AGG | 0.621722 | tig0000051:-1878 | None:intergenic |
| TTATGATCATGTTCCTACGC+CGG | 0.624066 | tig0000051:+245 | Msa1335060:CDS |
| GAAGGATGATCATCGTTCGC+CGG | 0.636531 | tig0000051:-108 | None:intergenic |
| ATGGACTTAATTAATCACAC+CGG | 0.636872 | tig0000051:+3245 | Msa1335060:three_prime_UTR |
| TATAGGACAGAGGTTTGTGA+AGG | 0.638805 | tig0000051:+143 | Msa1335060:CDS |
| AAATATCGGGAAAAGTATGA+CGG | 0.640015 | tig0000051:+2875 | Msa1335060:CDS |
| CCTATAGCAACATCGTGCGA+AGG | 0.640300 | tig0000051:-126 | None:intergenic |
| TGGACTTAATTAATCACACC+GGG | 0.644470 | tig0000051:+3246 | Msa1335060:three_prime_UTR |
| GGAACACCAACAACCGGCGT+AGG | 0.651108 | tig0000051:-258 | None:intergenic |
| CAGCTAGCATCTCAGCTCAA+CGG | 0.652491 | tig0000051:+2828 | Msa1335060:CDS |
| CCGGTACGCCTATCAATCCA+AGG | 0.656278 | tig0000051:-366 | None:intergenic |
| TTACGTATGATGAACATGGT+GGG | 0.674961 | tig0000051:+220 | Msa1335060:CDS |
| TTGATTACGTATGATGAACA+TGG | 0.675038 | tig0000051:+216 | Msa1335060:CDS |
| GCAGTGATTCATGAACCGGA+TGG | 0.689986 | tig0000051:+1748 | Msa1335060:intron |
| ACTCTGCTATTGTCACAATG+AGG | 0.691650 | tig0000051:+2982 | Msa1335060:CDS |
| ACGATGTTGCTATAGGACAG+AGG | 0.702057 | tig0000051:+133 | Msa1335060:CDS |
| ACTTAATTAATCACACCGGG+TGG | 0.705142 | tig0000051:+3249 | Msa1335060:three_prime_UTR |
| TTTAAGAACAATCAACCACC+CGG | 0.706968 | tig0000051:-3264 | None:intergenic |
| ATTACGTATGATGAACATGG+TGG | 0.708371 | tig0000051:+219 | Msa1335060:CDS |
| ATCGCCATCTCCTTCCACTG+AGG | 0.719737 | tig0000051:-192 | None:intergenic |
| ATCAAACCTAAAATAATACG+GGG | 0.748075 | tig0000051:-307 | None:intergenic |
| AAACCTGGACAATCATCACG+AGG | 0.748499 | tig0000051:-1910 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAATAATAAAAACAATTTT+TGG | - | tig0000051:1644-1663 | None:intergenic | 10.0% |
| !! | AATATTGATACAAATATATT+TGG | - | tig0000051:2053-2072 | None:intergenic | 10.0% |
| !! | TATATTTGTATCAATATTAT+AGG | + | tig0000051:2055-2074 | Msa1335060:intron | 10.0% |
| !!! | AAAGTTTTGTATATATATTT+TGG | - | tig0000051:2629-2648 | None:intergenic | 10.0% |
| !! | ATAGAATGTTTAGATTTATT+AGG | + | tig0000051:843-862 | Msa1335060:intron | 15.0% |
| !! | TATCTTTCTTAAATATCATA+TGG | - | tig0000051:3139-3158 | None:intergenic | 15.0% |
| !! | TTATGGTAAAAAAGATTATT+TGG | + | tig0000051:3220-3239 | Msa1335060:three_prime_UTR | 15.0% |
| !! | TAAAAAAGATTATTTGGTAA+TGG | + | tig0000051:3226-3245 | Msa1335060:three_prime_UTR | 15.0% |
| !! | ATTTACGAAATTAAAATTCT+TGG | - | tig0000051:3305-3324 | None:intergenic | 15.0% |
| !!! | TTTTTATGCTCTTTTGTTTT+TGG | + | tig0000051:409-428 | Msa1335060:intron | 20.0% |
| !! | CAAAAAAATTCAAATACACA+AGG | - | tig0000051:1004-1023 | None:intergenic | 20.0% |
| !!! | AAAACAATTTTTGGTTAGTA+AGG | - | tig0000051:1635-1654 | None:intergenic | 20.0% |
| !! | ACATTTGACTAAATAAATCT+TGG | + | tig0000051:1954-1973 | Msa1335060:intron | 20.0% |
| !!! | AGAGAATGTTACTTTTATTA+GGG | - | tig0000051:2025-2044 | None:intergenic | 20.0% |
| !! | ATTGGAATTATTATCATAGA+TGG | - | tig0000051:2431-2450 | None:intergenic | 20.0% |
| !! | TCCAATTATTAATCACAAAA+GGG | + | tig0000051:2602-2621 | Msa1335060:intron | 20.0% |
| ! | TGCTCAATAACAACATAATT+CGG | - | tig0000051:63-82 | None:intergenic | 25.0% |
| ! | ATCAAACCTAAAATAATACG+GGG | - | tig0000051:310-329 | None:intergenic | 25.0% |
| ! | GATCAAACCTAAAATAATAC+GGG | - | tig0000051:311-330 | None:intergenic | 25.0% |
| ! | CGATCAAACCTAAAATAATA+CGG | - | tig0000051:312-331 | None:intergenic | 25.0% |
| !!! | CGTATTATTTTAGGTTTGAT+CGG | + | tig0000051:310-329 | Msa1335060:CDS | 25.0% |
| ! | GAGCATAAAAATTCAAACTT+TGG | - | tig0000051:400-419 | None:intergenic | 25.0% |
| !!! | TGAATCTATTTTTGAAACCA+TGG | + | tig0000051:624-643 | Msa1335060:intron | 25.0% |
| !! | AGATTTATTAGGTTGTTAAG+AGG | + | tig0000051:854-873 | Msa1335060:intron | 25.0% |
| !! | AAGTATTTGATAACTTCATG+TGG | + | tig0000051:895-914 | Msa1335060:intron | 25.0% |
| ! | CCAAAAAATAACTTCAACAA+AGG | - | tig0000051:932-951 | None:intergenic | 25.0% |
| !!! | CCTTTGTTGAAGTTATTTTT+TGG | + | tig0000051:929-948 | Msa1335060:intron | 25.0% |
| !!! | AGTATACTGAAAACTGATTT+TGG | + | tig0000051:1073-1092 | Msa1335060:intron | 25.0% |
| ! | CTTTGCAACTTATGAAAATT+AGG | + | tig0000051:1290-1309 | Msa1335060:intron | 25.0% |
| ! | CACTGGAAAATATTGAATTA+CGG | - | tig0000051:1390-1409 | None:intergenic | 25.0% |
| ! | CTTATTGTTTATTCTGTTCA+TGG | + | tig0000051:1526-1545 | Msa1335060:intron | 25.0% |
| !!! | TGTTTTTATTATTTCTGTGC+CGG | + | tig0000051:1649-1668 | Msa1335060:intron | 25.0% |
| ! | GAATGTTCATATTGAGAATA+TGG | - | tig0000051:1781-1800 | None:intergenic | 25.0% |
| !!! | GAGAATGTTACTTTTATTAG+GGG | - | tig0000051:2024-2043 | None:intergenic | 25.0% |
| !!! | CAGAGAATGTTACTTTTATT+AGG | - | tig0000051:2026-2045 | None:intergenic | 25.0% |
| ! | AATCGTTCATATCAGATTAA+CGG | - | tig0000051:2292-2311 | None:intergenic | 25.0% |
| ! | GTCCAATTATTAATCACAAA+AGG | + | tig0000051:2601-2620 | Msa1335060:intron | 25.0% |
| !! | ACCCTTTTGTGATTAATAAT+TGG | - | tig0000051:2606-2625 | None:intergenic | 25.0% |
| ! | AATAAATCACTTGCATCAAA+CGG | - | tig0000051:2679-2698 | None:intergenic | 25.0% |
| ! | ATCATGTTAATACATAATGC+TGG | - | tig0000051:2704-2723 | None:intergenic | 25.0% |
| ! | AAGTCTTTCAGAATTTCAAA+TGG | + | tig0000051:2797-2816 | Msa1335060:CDS | 25.0% |
| ! | ACTAATTTATTCACAACTAG+AGG | + | tig0000051:3060-3079 | Msa1335060:exon | 25.0% |
| ! | ATTATGTTGTTATTGAGCAG+AGG | + | tig0000051:64-83 | Msa1335060:CDS | 30.0% |
| TTGATTACGTATGATGAACA+TGG | + | tig0000051:216-235 | Msa1335060:CDS | 30.0% | |
| !!! | TTATTTTAGGTTTGATCGGT+TGG | + | tig0000051:314-333 | Msa1335060:CDS | 30.0% |
| !!! | TATTTTAGGTTTGATCGGTT+GGG | + | tig0000051:315-334 | Msa1335060:CDS | 30.0% |
| ! | TCAAACTTTGGAAAACATAC+CGG | - | tig0000051:388-407 | None:intergenic | 30.0% |
| AATGAACACAAACAAAACCA+TGG | - | tig0000051:644-663 | None:intergenic | 30.0% | |
| !! | TCTTTGAGGTTGTCTTAATT+GGG | + | tig0000051:670-689 | Msa1335060:intron | 30.0% |
| !!! | TGGGAAGTTTGTTTTGTTTT+TGG | + | tig0000051:689-708 | Msa1335060:intron | 30.0% |
| TGTGAGTGTTAATTTATCGT+TGG | + | tig0000051:735-754 | Msa1335060:intron | 30.0% | |
| ! | TTTAGAATCTGATGCCAATT+TGG | + | tig0000051:760-779 | Msa1335060:intron | 30.0% |
| TACAACAAGAACTACCAAAT+TGG | - | tig0000051:777-796 | None:intergenic | 30.0% | |
| ! | TTATTAGGTTGTTAAGAGGA+TGG | + | tig0000051:858-877 | Msa1335060:intron | 30.0% |
| TCAAATTCACTCAAAACTAG+AGG | - | tig0000051:1144-1163 | None:intergenic | 30.0% | |
| TTGAGTGAAACGTAATAAAC+AGG | + | tig0000051:1160-1179 | Msa1335060:intron | 30.0% | |
| TTTAGACAGGTTATGGAATT+AGG | + | tig0000051:1230-1249 | Msa1335060:intron | 30.0% | |
| AAGTTGCAAAGAAGTAGAAA+CGG | - | tig0000051:1281-1300 | None:intergenic | 30.0% | |
| ATTGAATTACGGCATATCTT+GGG | - | tig0000051:1379-1398 | None:intergenic | 30.0% | |
| TATTGAATTACGGCATATCT+TGG | - | tig0000051:1380-1399 | None:intergenic | 30.0% | |
| CTGAAGAACATTACTTACTT+AGG | - | tig0000051:1418-1437 | None:intergenic | 30.0% | |
| TAATGTTCTTCAGTGTTCAT+TGG | + | tig0000051:1425-1444 | Msa1335060:intron | 30.0% | |
| ATGCAGAAACAACTTTATAC+TGG | - | tig0000051:1451-1470 | None:intergenic | 30.0% | |
| AAAAAGGCAATCAAAACAAG+AGG | - | tig0000051:1683-1702 | None:intergenic | 30.0% | |
| ATTGAAAAGCTTCTTTACTG+TGG | - | tig0000051:1815-1834 | None:intergenic | 30.0% | |
| ATCTCTCTTTGTTAGGAAAT+TGG | - | tig0000051:1845-1864 | None:intergenic | 30.0% | |
| !! | AATGTAAAAGTACTTCTCGA+AGG | - | tig0000051:1881-1900 | None:intergenic | 30.0% |
| TTCATTTGTAGTCTCTAGTT+TGG | + | tig0000051:1997-2016 | Msa1335060:intron | 30.0% | |
| TCAACGAGAACTATGATATT+CGG | - | tig0000051:2126-2145 | None:intergenic | 30.0% | |
| ! | TCTTGTTCTTTTACTCTTAC+TGG | + | tig0000051:2146-2165 | Msa1335060:intron | 30.0% |
| ! | CTTGTTCTTTTACTCTTACT+GGG | + | tig0000051:2147-2166 | Msa1335060:intron | 30.0% |
| GAAAAATCATCTATTCAGTC+TGG | + | tig0000051:2181-2200 | Msa1335060:intron | 30.0% | |
| ! | TTACATGCAGTTTTCAATCT+CGG | + | tig0000051:2266-2285 | Msa1335060:intron | 30.0% |
| ! | GACCTTAATTTAAGATCCAA+CGG | + | tig0000051:2350-2369 | Msa1335060:intron | 30.0% |
| AACCGTTGGATCTTAAATTA+AGG | - | tig0000051:2355-2374 | None:intergenic | 30.0% | |
| ATTATCATAGATGGTAGCTT+GGG | - | tig0000051:2422-2441 | None:intergenic | 30.0% | |
| TATTATCATAGATGGTAGCT+TGG | - | tig0000051:2423-2442 | None:intergenic | 30.0% | |
| GCAGTTAGTAAACTATATAC+AGG | - | tig0000051:2507-2526 | None:intergenic | 30.0% | |
| !!! | TTTTGAGATAGAGACAGAAA+TGG | - | tig0000051:2550-2569 | None:intergenic | 30.0% |
| CTCTATCTCAAAAGTTAGTT+TGG | + | tig0000051:2557-2576 | Msa1335060:intron | 30.0% | |
| GAAGTATATTGAAATGCCAA+TGG | + | tig0000051:2579-2598 | Msa1335060:intron | 30.0% | |
| GTGATTAATAATTGGACCAT+TGG | - | tig0000051:2598-2617 | None:intergenic | 30.0% | |
| CTTAGATTAATCTTCACTTC+AGG | - | tig0000051:2753-2772 | None:intergenic | 30.0% | |
| CTGAAGTGAAGATTAATCTA+AGG | + | tig0000051:2751-2770 | Msa1335060:CDS | 30.0% | |
| ! | AAGATTAATCTAAGGCCATT+TGG | + | tig0000051:2759-2778 | Msa1335060:CDS | 30.0% |
| ! | GAAAGACTTGAATCTTCTTT+TGG | - | tig0000051:2786-2805 | None:intergenic | 30.0% |
| CTCAATTCCTATCCAAATAT+CGG | + | tig0000051:2861-2880 | Msa1335060:CDS | 30.0% | |
| TCAATTCCTATCCAAATATC+GGG | + | tig0000051:2862-2881 | Msa1335060:CDS | 30.0% | |
| ! | AAATATCGGGAAAAGTATGA+CGG | + | tig0000051:2875-2894 | Msa1335060:CDS | 30.0% |
| ATGGACTTAATTAATCACAC+CGG | + | tig0000051:3245-3264 | Msa1335060:three_prime_UTR | 30.0% | |
| ATTACGTATGATGAACATGG+TGG | + | tig0000051:219-238 | Msa1335060:CDS | 35.0% | |
| TTACGTATGATGAACATGGT+GGG | + | tig0000051:220-239 | Msa1335060:CDS | 35.0% | |
| AACCTAAAATAATACGGGGT+AGG | - | tig0000051:306-325 | None:intergenic | 35.0% | |
| GATGCAACTTAATTATGCAG+TGG | + | tig0000051:540-559 | Msa1335060:intron | 35.0% | |
| !! | CACCAAAAGCTTTGATTTTG+TGG | + | tig0000051:583-602 | Msa1335060:intron | 35.0% |
| ! | AGCCACAAAATCAAAGCTTT+TGG | - | tig0000051:588-607 | None:intergenic | 35.0% |
| TGTTCATTCCTTTGTCTTTG+AGG | + | tig0000051:656-675 | Msa1335060:intron | 35.0% | |
| TAAGACAACCTCAAAGACAA+AGG | - | tig0000051:667-686 | None:intergenic | 35.0% | |
| !! | GTCTTTGAGGTTGTCTTAAT+TGG | + | tig0000051:669-688 | Msa1335060:intron | 35.0% |
| TATACTTCAACCAAGTCTAG+AGG | - | tig0000051:800-819 | None:intergenic | 35.0% | |
| ! | GACTTGGTTGAAGTATACTT+TGG | + | tig0000051:803-822 | Msa1335060:intron | 35.0% |
| ! | CTAAGTGAGTTGAAAGAAAG+TGG | + | tig0000051:1203-1222 | Msa1335060:intron | 35.0% |
| AGAAAGTGGCTTATTTAGAC+AGG | + | tig0000051:1217-1236 | Msa1335060:intron | 35.0% | |
| TGGCTTATTTAGACAGGTTA+TGG | + | tig0000051:1223-1242 | Msa1335060:intron | 35.0% | |
| TTGAATTACGGCATATCTTG+GGG | - | tig0000051:1378-1397 | None:intergenic | 35.0% | |
| TCATTCTCAGTAACTGTGTT+TGG | + | tig0000051:1592-1611 | Msa1335060:intron | 35.0% | |
| !!! | TTATTTCTGTGCCGGTTTTA+TGG | + | tig0000051:1657-1676 | Msa1335060:intron | 35.0% |
| AAAACAAGAGGCCATAAAAC+CGG | - | tig0000051:1671-1690 | None:intergenic | 35.0% | |
| !!! | TGCCTTTTTTGAGCATAAGT+TGG | + | tig0000051:1694-1713 | Msa1335060:intron | 35.0% |
| AGCCAACTTATGCTCAAAAA+AGG | - | tig0000051:1699-1718 | None:intergenic | 35.0% | |
| TCATATTGAGAATATGGCGT+TGG | - | tig0000051:1775-1794 | None:intergenic | 35.0% | |
| AAATTTCTATGACTGCACTC+AGG | - | tig0000051:2484-2503 | None:intergenic | 35.0% | |
| ! | GAATCTTCTTTTGGTCCAAA+TGG | - | tig0000051:2777-2796 | None:intergenic | 35.0% |
| ! | ACTTTTCCCGATATTTGGAT+AGG | - | tig0000051:2871-2890 | None:intergenic | 35.0% |
| ! | GTCATACTTTTCCCGATATT+TGG | - | tig0000051:2876-2895 | None:intergenic | 35.0% |
| AGTAAGATTCCAACTGCTTT+CGG | - | tig0000051:3043-3062 | None:intergenic | 35.0% | |
| ! | ACCAGACAACTGATTAGTTA+TGG | + | tig0000051:3203-3222 | Msa1335060:three_prime_UTR | 35.0% |
| ACCATAACTAATCAGTTGTC+TGG | - | tig0000051:3207-3226 | None:intergenic | 35.0% | |
| TGGACTTAATTAATCACACC+GGG | + | tig0000051:3246-3265 | Msa1335060:three_prime_UTR | 35.0% | |
| TTTAAGAACAATCAACCACC+CGG | - | tig0000051:3267-3286 | None:intergenic | 35.0% | |
| TTTCGATGTGAAGGTTTCTC+CGG | + | tig0000051:89-108 | Msa1335060:CDS | 40.0% | |
| TATAGGACAGAGGTTTGTGA+AGG | + | tig0000051:143-162 | Msa1335060:CDS | 40.0% | |
| GTTTGTGAAGGAGGTTTATG+AGG | + | tig0000051:155-174 | Msa1335060:CDS | 40.0% | |
| ! | AGGAGGTTTATGAGGTTTTG+AGG | + | tig0000051:163-182 | Msa1335060:intron | 40.0% |
| TTATGATCATGTTCCTACGC+CGG | + | tig0000051:245-264 | Msa1335060:CDS | 40.0% | |
| CAAGGCGAAATGAGAAAAGT+CGG | - | tig0000051:351-370 | None:intergenic | 40.0% | |
| TCATTTCGCCTTGGATTGAT+AGG | + | tig0000051:358-377 | Msa1335060:CDS | 40.0% | |
| ATTATGCAGTGGTTGTGTTG+CGG | + | tig0000051:551-570 | Msa1335060:intron | 40.0% | |
| ! | TCTTGTTGTACCTCTAGACT+TGG | + | tig0000051:787-806 | Msa1335060:intron | 40.0% |
| TGAATTACGGCATATCTTGG+GGG | - | tig0000051:1377-1396 | None:intergenic | 40.0% | |
| !! | TACTTACTTAGGTTGAGCAC+TGG | - | tig0000051:1407-1426 | None:intergenic | 40.0% |
| TCTCAGTAACTGTGTTTGGA+TGG | + | tig0000051:1596-1615 | Msa1335060:intron | 40.0% | |
| CTCAGTAACTGTGTTTGGAT+GGG | + | tig0000051:1597-1616 | Msa1335060:intron | 40.0% | |
| TCTTGCAGTGATTCATGAAC+CGG | + | tig0000051:1744-1763 | Msa1335060:intron | 40.0% | |
| AAAAGCTTCTTTACTGTGGC+AGG | - | tig0000051:1811-1830 | None:intergenic | 40.0% | |
| TCCTAACAAAGAGAGATGCA+TGG | + | tig0000051:1848-1867 | Msa1335060:CDS | 40.0% | |
| CCTAACAAAGAGAGATGCAT+GGG | + | tig0000051:1849-1868 | Msa1335060:CDS | 40.0% | |
| AGAAGAAGTAGATGCAAACC+TGG | - | tig0000051:1928-1947 | None:intergenic | 40.0% | |
| ATCATCTATTCAGTCTGGTC+TGG | + | tig0000051:2186-2205 | Msa1335060:intron | 40.0% | |
| GGTAGCTTGGGATTTGAATT+TGG | - | tig0000051:2410-2429 | None:intergenic | 40.0% | |
| GACTAGAGTGGTGTCTATAT+TGG | - | tig0000051:2449-2468 | None:intergenic | 40.0% | |
| ACTCTGCTATTGTCACAATG+AGG | + | tig0000051:2982-3001 | Msa1335060:CDS | 40.0% | |
| AACAGAAACTCTGCTGGTAA+GGG | - | tig0000051:3012-3031 | None:intergenic | 40.0% | |
| GTAAGATTCCAACTGCTTTC+GGG | - | tig0000051:3042-3061 | None:intergenic | 40.0% | |
| ACTTAATTAATCACACCGGG+TGG | + | tig0000051:3249-3268 | Msa1335060:three_prime_UTR | 40.0% | |
| ATTCGGTAACTTCCCCTTCA+AGG | - | tig0000051:46-65 | None:intergenic | 45.0% | |
| !! | GCAGAGGTATTTCGATGTGA+AGG | + | tig0000051:80-99 | Msa1335060:CDS | 45.0% |
| ACGATGTTGCTATAGGACAG+AGG | + | tig0000051:133-152 | Msa1335060:CDS | 45.0% | |
| !! | TTTTGAGGAAGAGTCCTCAG+TGG | + | tig0000051:178-197 | Msa1335060:intron | 45.0% |
| CCAATAATCCCATCCGGATT+CGG | - | tig0000051:282-301 | None:intergenic | 45.0% | |
| CGAATCCGGATGGGATTATT+GGG | + | tig0000051:280-299 | Msa1335060:CDS | 45.0% | |
| ! | GGCCTACCCCGTATTATTTT+AGG | + | tig0000051:301-320 | Msa1335060:CDS | 45.0% |
| ! | CGACTTTTCTCATTTCGCCT+TGG | + | tig0000051:349-368 | Msa1335060:CDS | 45.0% |
| GAATTACGGCATATCTTGGG+GGG | - | tig0000051:1376-1395 | None:intergenic | 45.0% | |
| GGTTAGTAAGGCACAGCTTA+TGG | - | tig0000051:1623-1642 | None:intergenic | 45.0% | |
| CCCATGCATCTCTCTTTGTT+AGG | - | tig0000051:1852-1871 | None:intergenic | 45.0% | |
| AAACCTGGACAATCATCACG+AGG | - | tig0000051:1913-1932 | None:intergenic | 45.0% | |
| ACTGCAATGAATCCAGATCC+TGG | - | tig0000051:2232-2251 | None:intergenic | 45.0% | |
| CAGATTTCGATCTCAACCGT+TGG | - | tig0000051:2369-2388 | None:intergenic | 45.0% | |
| AGATCGAAATCTGCATGACG+CGG | + | tig0000051:2376-2395 | Msa1335060:intron | 45.0% | |
| ! | TATGGCTTCTTGGACTAGAG+TGG | - | tig0000051:2461-2480 | None:intergenic | 45.0% |
| TCTATGACTGCACTCAGGTA+TGG | - | tig0000051:2479-2498 | None:intergenic | 45.0% | |
| ATGCAGAAGATGCAGTGAAG+AGG | + | tig0000051:2916-2935 | Msa1335060:CDS | 45.0% | |
| GTGAAGAGGTTTCTTGAAGC+AGG | + | tig0000051:2930-2949 | Msa1335060:CDS | 45.0% | |
| GAGGTTTCTTGAAGCAGGAA+AGG | + | tig0000051:2935-2954 | Msa1335060:CDS | 45.0% | |
| CAACAGAAACTCTGCTGGTA+AGG | - | tig0000051:3013-3032 | None:intergenic | 45.0% | |
| CTTACCAGCAGAGTTTCTGT+TGG | + | tig0000051:3011-3030 | Msa1335060:CDS | 45.0% | |
| GAAGGATGATCATCGTTCGC+CGG | - | tig0000051:111-130 | None:intergenic | 50.0% | |
| CCTATAGCAACATCGTGCGA+AGG | - | tig0000051:129-148 | None:intergenic | 50.0% | |
| CCTTCGCACGATGTTGCTAT+AGG | + | tig0000051:126-145 | Msa1335060:CDS | 50.0% | |
| AGGACAGAGGTTTGTGAAGG+AGG | + | tig0000051:146-165 | Msa1335060:CDS | 50.0% | |
| GGATTCGGAACACCAACAAC+CGG | - | tig0000051:267-286 | None:intergenic | 50.0% | |
| ! | GGTTGTTGGTGTTCCGAATC+CGG | + | tig0000051:266-285 | Msa1335060:CDS | 50.0% |
| ! | TTGGTGTTCCGAATCCGGAT+GGG | + | tig0000051:271-290 | Msa1335060:CDS | 50.0% |
| CCGAATCCGGATGGGATTAT+TGG | + | tig0000051:279-298 | Msa1335060:CDS | 50.0% | |
| GTAGGCCCAATAATCCCATC+CGG | - | tig0000051:288-307 | None:intergenic | 50.0% | |
| CCTTGGATTGATAGGCGTAC+CGG | + | tig0000051:366-385 | Msa1335060:CDS | 50.0% | |
| ! | CACGAGTGTTGCACTTGATC+TGG | + | tig0000051:962-981 | Msa1335060:intron | 50.0% |
| GCAGTGATTCATGAACCGGA+TGG | + | tig0000051:1748-1767 | Msa1335060:intron | 50.0% | |
| ! | GAATATGGCGTTGGACCATC+CGG | - | tig0000051:1766-1785 | None:intergenic | 50.0% |
| ACAAAGAGAGATGCATGGGC+TGG | + | tig0000051:1853-1872 | Msa1335060:CDS | 50.0% | |
| ACTCCTCGTGATGATTGTCC+AGG | + | tig0000051:1907-1926 | Msa1335060:CDS | 50.0% | |
| ACCAATAGACCAGAGCTACC+AGG | + | tig0000051:2211-2230 | Msa1335060:intron | 50.0% | |
| !! | TCCTGGTAGCTCTGGTCTAT+TGG | - | tig0000051:2215-2234 | None:intergenic | 50.0% |
| AATCCAGATCCTGGTAGCTC+TGG | - | tig0000051:2223-2242 | None:intergenic | 50.0% | |
| TGCACTCAGGTATGGCTTCT+TGG | - | tig0000051:2471-2490 | None:intergenic | 50.0% | |
| CAGCTAGCATCTCAGCTCAA+CGG | + | tig0000051:2828-2847 | Msa1335060:CDS | 50.0% | |
| GGAAAGGCTGCTCTTAAAGC+TGG | + | tig0000051:2951-2970 | Msa1335060:CDS | 50.0% | |
| GAAACTCTGCTGGTAAGGGA+AGG | - | tig0000051:3008-3027 | None:intergenic | 50.0% | |
| ACCAGCAGAGTTTCTGTTGG+AGG | + | tig0000051:3014-3033 | Msa1335060:CDS | 50.0% | |
| ACCTCCAACAGAAACTCTGC+TGG | - | tig0000051:3018-3037 | None:intergenic | 50.0% | |
| GAGGAAGAGTCCTCAGTGGA+AGG | + | tig0000051:182-201 | Msa1335060:intron | 55.0% | |
| GAGTCCTCAGTGGAAGGAGA+TGG | + | tig0000051:188-207 | Msa1335060:intron | 55.0% | |
| ATCGCCATCTCCTTCCACTG+AGG | - | tig0000051:195-214 | None:intergenic | 55.0% | |
| ! | CATGTTCCTACGCCGGTTGT+TGG | + | tig0000051:252-271 | Msa1335060:CDS | 55.0% |
| ! | GTTGGTGTTCCGAATCCGGA+TGG | + | tig0000051:270-289 | Msa1335060:CDS | 55.0% |
| CCGGTACGCCTATCAATCCA+AGG | - | tig0000051:369-388 | None:intergenic | 55.0% | |
| TTACGGCATATCTTGGGGGG+AGG | - | tig0000051:1373-1392 | None:intergenic | 55.0% | |
| AGACCAGAGCTACCAGGATC+TGG | + | tig0000051:2217-2236 | Msa1335060:intron | 55.0% | |
| CGTTGAGCTGAGATGCTAGC+TGG | - | tig0000051:2830-2849 | None:intergenic | 55.0% | |
| TGGAGGTTCCCGAAAGCAGT+TGG | + | tig0000051:3031-3050 | Msa1335060:CDS | 55.0% | |
| GGAACACCAACAACCGGCGT+AGG | - | tig0000051:261-280 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0000051 | gene | 36 | 3393 | 36 | ID=Msa1335060;Name=Msa1335060 |
| tig0000051 | mRNA | 36 | 3393 | 36 | ID=Msa1335060-mRNA-1;Parent=Msa1335060;Name=Msa1335060-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.66|0.5|1|0.33|0.5|4|329|279 |
| tig0000051 | exon | 36 | 176 | 36 | ID=Msa1335060-mRNA-1:exon:3;Parent=Msa1335060-mRNA-1 |
| tig0000051 | exon | 189 | 387 | 189 | ID=Msa1335060-mRNA-1:exon:4;Parent=Msa1335060-mRNA-1 |
| tig0000051 | exon | 1752 | 1928 | 1752 | ID=Msa1335060-mRNA-1:exon:5;Parent=Msa1335060-mRNA-1 |
| tig0000051 | exon | 2742 | 3393 | 2742 | ID=Msa1335060-mRNA-1:exon:6;Parent=Msa1335060-mRNA-1 |
| tig0000051 | CDS | 36 | 176 | 36 | ID=Msa1335060-mRNA-1:cds;Parent=Msa1335060-mRNA-1 |
| tig0000051 | CDS | 189 | 387 | 189 | ID=Msa1335060-mRNA-1:cds;Parent=Msa1335060-mRNA-1 |
| tig0000051 | CDS | 1752 | 1928 | 1752 | ID=Msa1335060-mRNA-1:cds;Parent=Msa1335060-mRNA-1 |
| tig0000051 | CDS | 2742 | 3064 | 2742 | ID=Msa1335060-mRNA-1:cds;Parent=Msa1335060-mRNA-1 |
| tig0000051 | three_prime_UTR | 3065 | 3393 | 3065 | ID=Msa1335060-mRNA-1:three_prime_utr;Parent=Msa1335060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
