AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1335730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1335730 MtrunA17_Chr1g0153671 99.068 429 3 1 1 429 1 428 0.0 869
Msa1335730 MtrunA17_Chr3g0133801 83.721 430 67 2 1 428 1 429 0.0 743
Msa1335730 MtrunA17_Chr1g0209451 60.287 418 161 3 4 418 7 422 0.0 531
Msa1335730 MtrunA17_Chr7g0271971 58.824 408 167 1 11 418 14 420 5.52e-173 491
Msa1335730 MtrunA17_Chr1g0192471 56.585 410 177 1 11 419 14 423 2.02e-164 469
Msa1335730 MtrunA17_Chr7g0225501 50.591 423 183 12 11 420 32 441 6.84e-124 366
Msa1335730 MtrunA17_Chr2g0326251 46.535 202 94 7 106 303 7 198 6.96e-49 166
Msa1335730 MtrunA17_Chr1g0150451 32.917 240 137 9 65 299 108 328 7.98e-26 107
Msa1335730 MtrunA17_Chr3g0136711 30.962 239 141 8 65 298 65 284 6.66e-24 100
Msa1335730 MtrunA17_Chr1g0212961 34.615 234 131 10 66 297 127 340 1.67e-23 100
Msa1335730 MtrunA17_Chr2g0317021 30.638 235 139 9 65 294 117 332 2.09e-22 97.4
Msa1335730 MtrunA17_Chr3g0105351 27.426 237 151 8 64 294 93 314 1.84e-21 94.4
Msa1335730 MtrunA17_Chr3g0126511 31.837 245 144 7 65 305 125 350 1.61e-20 92.4
Msa1335730 MtrunA17_Chr3g0105371 27.615 239 148 9 64 294 117 338 1.62e-20 92.0
Msa1335730 MtrunA17_Chr8g0360351 32.766 235 130 12 65 292 66 279 1.90e-20 90.9
Msa1335730 MtrunA17_Chr4g0065141 30.534 262 135 10 64 304 123 358 2.34e-19 89.4
Msa1335730 MtrunA17_Chr5g0430481 28.279 244 150 10 59 294 148 374 3.05e-19 89.0
Msa1335730 MtrunA17_Chr4g0070871 28.244 262 143 8 66 294 254 503 6.24e-19 89.0
Msa1335730 MtrunA17_Chr2g0279151 29.185 233 141 9 65 292 65 278 7.59e-19 86.3
Msa1335730 MtrunA17_Chr1g0150781 30.292 274 135 11 66 299 291 548 9.72e-18 85.5
Msa1335730 MtrunA17_Chr5g0407161 26.119 268 158 9 61 311 120 364 1.82e-17 83.6
Msa1335730 MtrunA17_Chr1g0171571 29.268 246 141 7 66 296 419 646 2.63e-17 84.3
Msa1335730 MtrunA17_Chr1g0194191 29.588 267 149 12 64 308 117 366 2.80e-17 83.2
Msa1335730 MtrunA17_Chr3g0115851 27.778 234 143 8 65 292 66 279 3.25e-17 81.6
Msa1335730 MtrunA17_Chr4g0050381 28.205 234 142 9 65 292 61 274 3.35e-17 81.6
Msa1335730 MtrunA17_Chr4g0051661 30.126 239 138 10 61 292 179 395 5.54e-17 82.4
Msa1335730 MtrunA17_Chr5g0426141 28.326 233 143 8 65 292 66 279 1.14e-16 80.1
Msa1335730 MtrunA17_Chr1g0158781 29.555 247 143 8 66 294 146 379 1.77e-16 80.9
Msa1335730 MtrunA17_Chr3g0135961 28.058 278 144 9 62 299 283 544 8.48e-16 79.3
Msa1335730 MtrunA17_Chr6g0483411 27.843 255 138 10 66 292 80 316 1.31e-15 77.4
Msa1335730 MtrunA17_Chr2g0295401 30.325 277 143 16 67 301 94 362 5.75e-14 72.8
Msa1335730 MtrunA17_Chr2g0299981 27.368 285 144 9 66 299 268 540 1.30e-13 72.8
Msa1335730 MtrunA17_Chr8g0389921 25.483 259 160 9 66 302 199 446 1.42e-13 72.4
Msa1335730 MtrunA17_Chr1g0150071 28.125 256 113 11 62 262 49 288 6.62e-13 69.7
Msa1335730 MtrunA17_Chr4g0067711 32.124 193 105 11 127 299 173 359 8.58e-13 69.3
Msa1335730 MtrunA17_Chr3g0136811 34.437 151 70 6 120 259 153 285 1.40e-12 68.6
Msa1335730 MtrunA17_Chr2g0293811 27.509 269 159 11 64 313 99 350 5.57e-12 67.0
Msa1335730 MtrunA17_Chr2g0286951 28.674 279 152 13 52 294 74 341 3.62e-11 64.7
Msa1335730 MtrunA17_Chr7g0272061 32.727 165 94 7 128 280 182 341 5.76e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1335730 AT1G47380.1 76.690 429 98 2 1 428 1 428 0.0 697
Msa1335730 AT1G68410.4 57.245 421 174 2 4 418 9 429 8.82e-180 509
Msa1335730 AT1G68410.3 57.245 421 174 2 4 418 9 429 8.82e-180 509
Msa1335730 AT1G68410.1 57.245 421 174 2 4 418 9 429 8.82e-180 509
Msa1335730 AT1G68410.2 57.245 421 174 2 4 418 9 429 8.82e-180 509
Msa1335730 AT1G09160.2 57.971 414 169 3 7 418 10 420 3.53e-169 481
Msa1335730 AT1G09160.1 57.971 414 169 3 7 418 10 420 3.53e-169 481
Msa1335730 AT5G53140.1 31.923 260 150 8 37 292 109 345 1.81e-25 107
Msa1335730 AT5G53140.2 31.923 260 150 8 37 292 109 345 1.81e-25 107
Msa1335730 AT1G43900.1 35.043 234 127 10 64 292 153 366 1.11e-24 105
Msa1335730 AT2G34740.1 28.782 271 162 11 30 295 91 335 1.37e-23 101
Msa1335730 AT4G31750.2 30.544 239 142 9 65 298 64 283 1.14e-22 98.2
Msa1335730 AT4G31750.1 30.544 239 142 9 65 298 64 283 1.57e-22 97.8
Msa1335730 AT4G31750.3 30.544 239 142 9 65 298 64 283 1.57e-22 97.8
Msa1335730 AT2G40180.1 29.218 243 155 6 58 294 154 385 4.27e-22 97.8
Msa1335730 AT1G78200.5 30.342 234 140 8 65 292 19 235 5.93e-22 94.7
Msa1335730 AT1G78200.4 30.342 234 140 8 65 292 19 235 5.93e-22 94.7
Msa1335730 AT5G10740.1 30.508 236 140 8 65 295 64 280 8.62e-22 96.3
Msa1335730 AT5G10740.2 30.508 236 140 8 65 295 64 280 8.62e-22 96.3
Msa1335730 AT1G07160.1 31.683 202 119 6 64 262 152 337 1.08e-21 96.7
Msa1335730 AT1G22280.3 28.755 233 148 7 65 292 65 284 1.19e-21 94.7
Msa1335730 AT5G24940.1 30.085 236 141 8 65 295 64 280 1.30e-21 97.1
Msa1335730 AT1G78200.1 30.342 234 140 8 65 292 64 280 2.22e-21 94.0
Msa1335730 AT1G78200.3 30.342 234 140 8 65 292 64 280 2.22e-21 94.0
Msa1335730 AT1G78200.2 30.342 234 140 8 65 292 64 280 2.22e-21 94.0
Msa1335730 AT1G22280.1 29.185 233 141 7 65 292 65 278 1.04e-20 92.0
Msa1335730 AT1G67820.1 32.273 220 135 5 64 283 150 355 1.62e-20 94.0
Msa1335730 AT1G67820.2 32.273 220 135 5 64 283 114 319 1.74e-20 93.2
Msa1335730 AT5G57050.2 30.798 263 136 9 66 294 121 371 1.96e-20 92.8
Msa1335730 AT4G26080.1 29.588 267 143 8 66 299 173 427 2.64e-20 93.2
Msa1335730 AT5G57050.1 30.798 263 136 9 66 294 161 411 3.09e-20 92.8
Msa1335730 AT2G20630.1 28.731 268 160 12 30 292 35 276 4.06e-20 90.5
Msa1335730 AT4G28400.3 28.235 255 154 10 43 292 28 258 7.36e-20 89.4
Msa1335730 AT2G25620.1 30.451 266 136 10 64 305 127 367 1.27e-19 90.5
Msa1335730 AT2G25620.2 30.451 266 136 10 64 305 127 367 1.27e-19 90.5
Msa1335730 AT4G28400.1 28.235 255 154 10 43 292 50 280 1.30e-19 89.0
Msa1335730 AT2G20630.2 28.467 274 165 12 30 298 35 282 1.49e-19 89.0
Msa1335730 AT3G51470.2 28.782 271 151 11 59 311 56 302 1.57e-19 89.4
Msa1335730 AT1G34750.2 29.185 233 141 7 65 292 66 279 2.16e-19 88.2
Msa1335730 AT1G34750.1 29.185 233 141 7 65 292 66 279 2.16e-19 88.2
Msa1335730 AT1G34750.3 29.185 233 141 7 65 292 66 279 2.16e-19 88.2
Msa1335730 AT3G51470.1 28.782 271 151 11 59 311 100 346 3.05e-19 89.0
Msa1335730 AT2G30020.1 30.000 240 143 11 64 294 169 392 1.90e-18 87.0
Msa1335730 AT2G40860.4 31.174 247 136 7 65 296 325 552 2.60e-17 84.7
Msa1335730 AT2G40860.1 31.174 247 136 7 65 296 423 650 2.64e-17 84.7
Msa1335730 AT2G33700.1 29.730 259 136 11 64 304 122 352 6.03e-17 82.4
Msa1335730 AT1G48040.1 30.072 276 155 10 59 312 106 365 2.62e-16 80.5
Msa1335730 AT3G62260.3 29.044 272 145 12 64 309 26 275 6.96e-16 78.2
Msa1335730 AT4G27800.1 25.338 296 170 8 58 312 81 366 2.33e-15 77.8
Msa1335730 AT2G40860.2 30.435 230 118 6 65 270 423 634 2.92e-15 78.6
Msa1335730 AT3G62260.1 29.044 272 145 12 64 309 115 364 3.09e-15 77.4
Msa1335730 AT3G62260.2 29.044 272 145 12 64 309 116 365 3.14e-15 77.4
Msa1335730 AT5G27930.1 34.356 163 93 6 128 280 176 334 7.08e-14 73.2
Msa1335730 AT5G27930.2 34.356 163 93 6 128 280 176 334 7.08e-14 73.2
Msa1335730 AT4G27800.2 25.856 263 148 7 58 283 81 333 1.30e-13 72.0
Msa1335730 AT3G11410.1 29.060 234 121 9 62 266 134 351 2.45e-13 71.6
Msa1335730 AT3G15260.2 27.039 233 146 7 65 292 73 286 3.33e-13 70.1
Msa1335730 AT3G15260.1 27.039 233 146 7 65 292 73 286 3.33e-13 70.1
Msa1335730 AT4G27800.3 26.446 242 131 7 58 262 81 312 4.00e-13 70.5
Msa1335730 AT1G17550.1 25.952 289 147 10 62 299 234 506 1.40e-12 69.7
Msa1335730 AT1G17550.2 25.952 289 147 10 62 299 234 506 1.40e-12 69.7
Msa1335730 AT4G28400.2 26.754 228 136 9 30 249 33 237 1.19e-11 65.1
Msa1335730 AT4G32950.1 28.276 290 174 12 36 305 49 324 1.32e-11 65.9
Msa1335730 AT1G18030.2 29.952 207 106 8 66 250 110 299 3.41e-11 64.3
Msa1335730 AT5G26010.1 29.545 220 127 11 57 255 65 277 5.90e-11 63.9
Msa1335730 AT2G40860.3 31.088 193 102 5 65 244 423 597 7.53e-11 64.7

Find 157 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATCATCACAGGGCTTTA+TGG 0.131676 tig0000674:-24425 Msa1335730:three_prime_UTR
GTCTATACATATTCTGTTTA+TGG 0.146524 tig0000674:-29004 Msa1335730:CDS
AGGGCTTTATGGATCTAATT+TGG 0.182569 tig0000674:-24414 Msa1335730:three_prime_UTR
TGGGATCAGTTCATTGTATA+TGG 0.214836 tig0000674:-24224 Msa1335730:three_prime_UTR
TGGAAGACCACTTTCATTAA+AGG 0.258550 tig0000674:+24175 None:intergenic
CCATGGCTTCTTTCTTCTCC+TGG 0.273356 tig0000674:+24674 None:intergenic
TGCTGCTGCTATTTATTCTA+AGG 0.285233 tig0000674:-28375 Msa1335730:CDS
TTCATTGTATATGGGTCATT+TGG 0.286662 tig0000674:-24215 Msa1335730:three_prime_UTR
CCACAATTGTAATGTGATAT+AGG 0.288037 tig0000674:-24155 Msa1335730:three_prime_UTR
TTGCCTAGAGCTTTGGTTGC+TGG 0.297177 tig0000674:-28284 Msa1335730:CDS
CCATCAAACGGTTCCTCTTT+CGG 0.298563 tig0000674:-29161 Msa1335730:CDS
CATCAAAAGAAGCCAGTAAA+AGG 0.301310 tig0000674:-25065 Msa1335730:CDS
TCCTTTGGCCATATGAAGAT+TGG 0.324850 tig0000674:-24033 Msa1335730:three_prime_UTR
TCTATACATATTCTGTTTAT+GGG 0.326441 tig0000674:-29003 Msa1335730:CDS
CACTTACGACATTATTTAGA+AGG 0.339322 tig0000674:+28348 None:intergenic
GTCACCTTTGTGATTATAGA+AGG 0.340000 tig0000674:-26809 Msa1335730:CDS
CACAATTGTAATGTGATATA+GGG 0.347759 tig0000674:-24154 Msa1335730:three_prime_UTR
TTGTGTCTTTCACGGTCTAT+TGG 0.351135 tig0000674:-25876 Msa1335730:CDS
TCTATTGGAGATATGGATAT+TGG 0.357187 tig0000674:-25861 Msa1335730:CDS
TTCACGGTCTATTGGAGATA+TGG 0.367775 tig0000674:-25868 Msa1335730:CDS
ACTCAACCTTTCACAAAACT+TGG 0.368682 tig0000674:+24311 None:intergenic
GAGAAACCTGAGATTGTTCA+TGG 0.372409 tig0000674:-29103 Msa1335730:CDS
ATTACTTGTCAGCAGATCAT+AGG 0.376944 tig0000674:-26718 Msa1335730:CDS
TAAAGCCCTGTGATGATAGA+AGG 0.381239 tig0000674:+24428 None:intergenic
TTATCTGCAGTGATGGTGTT+TGG 0.384391 tig0000674:-25417 Msa1335730:CDS
ATCAAAATTGTTCATTCGAC+TGG 0.384763 tig0000674:-24485 Msa1335730:three_prime_UTR
GAAATGAGAAGATGATGAAT+TGG 0.385984 tig0000674:+29809 None:intergenic
AGCAGCGTTGCCTAGAGCTT+TGG 0.392801 tig0000674:-28291 Msa1335730:CDS
CCGGTGGCTTGTGTCTTTCA+CGG 0.416465 tig0000674:-25884 Msa1335730:CDS
GTCAGAGGATGGTTGGTGAT+GGG 0.426132 tig0000674:-29027 Msa1335730:CDS
TTTCCTTTGCTTTAGTTGCC+AGG 0.429172 tig0000674:-24692 Msa1335730:CDS
CCTTTGGCCATATGAAGATT+GGG 0.429793 tig0000674:-24032 Msa1335730:three_prime_UTR
ATGGAAGGGAAAAGATCATT+AGG 0.430336 tig0000674:-24655 Msa1335730:intron
CACTCATCTCTGTTAAGATC+TGG 0.439890 tig0000674:+28317 None:intergenic
TGTCAGAGGATGGTTGGTGA+TGG 0.440068 tig0000674:-29028 Msa1335730:CDS
GAGGTTGGTCGTTTAAATAC+AGG 0.444696 tig0000674:-26555 Msa1335730:CDS
ATATAGACCTTTAATGAAAG+TGG 0.445537 tig0000674:-24182 Msa1335730:three_prime_UTR
TATAAGTGGCAGTTCACAAC+AGG 0.445666 tig0000674:-24288 Msa1335730:three_prime_UTR
TATCTGCAGTGATGGTGTTT+GGG 0.448206 tig0000674:-25416 Msa1335730:CDS
GTTATTGTTATTGTTGTTGA+AGG 0.449173 tig0000674:+29892 None:intergenic
ACGGTGTCGTTTAGATGATC+AGG 0.453644 tig0000674:+29774 None:intergenic
CAGGTGGAATTTGAACTCTC+TGG 0.453646 tig0000674:-29338 Msa1335730:five_prime_UTR
TACAGCTCCACTACCACATC+TGG 0.464766 tig0000674:+24972 None:intergenic
AGGTTGGTCCTTTGAGATGT+TGG 0.465990 tig0000674:-25908 Msa1335730:CDS
GCTTGACCATGAACAATCTC+AGG 0.467857 tig0000674:+29097 None:intergenic
CTCTTTCGGTTCTATTGAAG+CGG 0.469837 tig0000674:-29147 Msa1335730:CDS
CCTTTGTGATTATAGAAGGA+TGG 0.472037 tig0000674:-26805 Msa1335730:CDS
ATGTACTGAAATACCCTCTC+CGG 0.472811 tig0000674:+24759 None:intergenic
GGGATCAGTTCATTGTATAT+GGG 0.479984 tig0000674:-24223 Msa1335730:three_prime_UTR
CAATCAAGGGCCACTTCTGC+AGG 0.480526 tig0000674:+25385 None:intergenic
TGGCAGTTCACAACAGGAAG+TGG 0.483910 tig0000674:-24282 Msa1335730:three_prime_UTR
CGCTTCAATAGAACCGAAAG+AGG 0.484359 tig0000674:+29148 None:intergenic
AGTTCAAATTCCACCTGGAC+AGG 0.486036 tig0000674:+29344 None:intergenic
TGTTGTCGATATATTACCTC+AGG 0.492152 tig0000674:-25111 Msa1335730:CDS
CCGAAAGAGGAACCGTTTGA+TGG 0.492567 tig0000674:+29161 None:intergenic
TAATATATCGACAACAATAC+AGG 0.495282 tig0000674:+25118 None:intergenic
TACAAGACCCAATCTTCATA+TGG 0.497077 tig0000674:+24025 None:intergenic
CAGGAAGCTTTACAAGCAAA+GGG 0.497674 tig0000674:-25158 Msa1335730:CDS
ATTCTAACATGGAAGTGTAA+TGG 0.498210 tig0000674:-24341 Msa1335730:three_prime_UTR
CTTTGTGATTATAGAAGGAT+GGG 0.507466 tig0000674:-26804 Msa1335730:CDS
GGATGCTTTACCTGCAGAAG+TGG 0.508685 tig0000674:-25395 Msa1335730:CDS
AAAGAATAAATCATTCGAAA+AGG 0.510123 tig0000674:+24076 None:intergenic
ACATGCCACGACAACAATCA+AGG 0.512860 tig0000674:+25371 None:intergenic
GAAGAATATTTGCAAAACGC+TGG 0.512864 tig0000674:-29862 Msa1335730:five_prime_UTR
ACTTCTAGCGGCGGTGAGGT+TGG 0.512986 tig0000674:-26570 Msa1335730:CDS
TCAGGAAGCTTTACAAGCAA+AGG 0.513371 tig0000674:-25159 Msa1335730:intron
GTGAAAGGTTGAGTTATAAG+TGG 0.514846 tig0000674:-24302 Msa1335730:three_prime_UTR
GTTGTAACAGTTGCATCAGT+TGG 0.519119 tig0000674:-26782 Msa1335730:CDS
TCAGAGGATGGTTGGTGATG+GGG 0.521504 tig0000674:-29026 Msa1335730:CDS
CGGCTCGTTATCTGCAGTGA+TGG 0.525551 tig0000674:-25424 Msa1335730:CDS
GCAAAGGAAAGGTCCATCCC+AGG 0.526286 tig0000674:+24705 None:intergenic
TGGTTGGTATCGAGAATTTG+AGG 0.526879 tig0000674:-29227 Msa1335730:five_prime_UTR
GAGATTGTTCATGGTCAAGC+TGG 0.527083 tig0000674:-29094 Msa1335730:CDS
TCAATTCAGCTGTCTACCGC+TGG 0.528577 tig0000674:-25451 Msa1335730:intron
CAAGCTGGACAAAGTAAGAA+AGG 0.531054 tig0000674:-29079 Msa1335730:CDS
CAGTATAATTGATCTATGAA+TGG 0.531068 tig0000674:+24116 None:intergenic
AAGAATATTTGCAAAACGCT+GGG 0.533463 tig0000674:-29861 Msa1335730:five_prime_UTR
AGCTGTCTACCGCTGGAGGC+CGG 0.534654 tig0000674:-25444 Msa1335730:CDS
CTCAACCTTTCACAAAACTT+GGG 0.538386 tig0000674:+24312 None:intergenic
TGACTCCCTTCTATCATCAC+AGG 0.538628 tig0000674:-24434 Msa1335730:three_prime_UTR
AAAGAAGTGCGCATTGTCGT+TGG 0.538834 tig0000674:-29260 Msa1335730:five_prime_UTR
CATGGAGCCAGATGTGGTAG+TGG 0.541537 tig0000674:-24979 Msa1335730:CDS
TGAACTCTCTGGCTTGCTTG+AGG 0.545068 tig0000674:-29327 Msa1335730:five_prime_UTR
AACTTGAACATGTTGCATAG+TGG 0.546946 tig0000674:+24817 None:intergenic
CCTATATCACATTACAATTG+TGG 0.549510 tig0000674:+24155 None:intergenic
TGATGTGGTACAGGAGCAGG+TGG 0.551757 tig0000674:+25083 None:intergenic
GGAGTCATTGTTGCTACGCT+AGG 0.555697 tig0000674:+24450 None:intergenic
CCAGGAGAAGAAAGAAGCCA+TGG 0.556410 tig0000674:-24674 Msa1335730:CDS
AGAAGATTCTAGTACGCAGC+GGG 0.558740 tig0000674:+26754 None:intergenic
CGTTGGTTGACTCTAGTGGT+TGG 0.560267 tig0000674:-29243 Msa1335730:five_prime_UTR
TCTTTCGGTTCTATTGAAGC+GGG 0.561579 tig0000674:-29146 Msa1335730:CDS
AATCCAGCAACCAAAGCTCT+AGG 0.565798 tig0000674:+28281 None:intergenic
CCCAATCTTCATATGGCCAA+AGG 0.569712 tig0000674:+24032 None:intergenic
TGTACTGAAATACCCTCTCC+GGG 0.570714 tig0000674:+24760 None:intergenic
TACTAGAATCTTCTGAAGGA+GGG 0.573395 tig0000674:-26745 Msa1335730:CDS
TCATAGATCAATTATACTGT+AGG 0.573875 tig0000674:-24112 Msa1335730:three_prime_UTR
AACCTTTCACAAAACTTGGG+TGG 0.574447 tig0000674:+24315 None:intergenic
GGTCCTTTGAGATGTTGGCC+CGG 0.574568 tig0000674:-25903 Msa1335730:CDS
CGTGAAAGACACAAGCCACC+GGG 0.575222 tig0000674:+25885 None:intergenic
TTATATTGACAAAGAATACA+TGG 0.576737 tig0000674:-24997 Msa1335730:CDS
CCGTGAAAGACACAAGCCAC+CGG 0.577523 tig0000674:+25884 None:intergenic
TTGTCGTTGGTTGACTCTAG+TGG 0.579170 tig0000674:-29247 Msa1335730:five_prime_UTR
CAAAGGAAAGGTCCATCCCA+GGG 0.579850 tig0000674:+24706 None:intergenic
CTATACATATTCTGTTTATG+GGG 0.580689 tig0000674:-29002 Msa1335730:intron
ACCATATGTAAAACAAGTGA+AGG 0.581674 tig0000674:-25820 Msa1335730:intron
AACAACAATAACAATAACAA+TGG 0.583245 tig0000674:-29887 Msa1335730:five_prime_UTR
TGTGGTAGTGGAGCTGTATG+AGG 0.585486 tig0000674:-24967 Msa1335730:CDS
AGAAGAAAGAAGCCATGGAA+GGG 0.588485 tig0000674:-24669 Msa1335730:CDS
AGAGGGTATTTCAGTACATG+AGG 0.592511 tig0000674:-24755 Msa1335730:CDS
GAGAAGAAAGAAGCCATGGA+AGG 0.596474 tig0000674:-24670 Msa1335730:CDS
GAGGAGTGAACACCATCAAA+CGG 0.597871 tig0000674:-29173 Msa1335730:CDS
AAAGCCCTGTGATGATAGAA+GGG 0.602365 tig0000674:+24429 None:intergenic
TGTTAAAGTCTGATTGTCAG+AGG 0.605972 tig0000674:-29042 Msa1335730:CDS
GCCAGTAAAAGGAATGCTCA+AGG 0.606078 tig0000674:-25054 Msa1335730:CDS
GTGGCCCTTGATTGTTGTCG+TGG 0.610123 tig0000674:-25376 Msa1335730:CDS
TCATCTCTGTTAAGATCTGG+AGG 0.610319 tig0000674:+28320 None:intergenic
ATTCAGCTGTCTACCGCTGG+AGG 0.611201 tig0000674:-25448 Msa1335730:intron
GGCAGTTCACAACAGGAAGT+GGG 0.612633 tig0000674:-24281 Msa1335730:three_prime_UTR
CAGCTATTTGATGGACACAA+TGG 0.613548 tig0000674:-28401 Msa1335730:CDS
GTCATTGTTGCTACGCTAGG+AGG 0.614806 tig0000674:+24453 None:intergenic
CAGAAGATTCTAGTACGCAG+CGG 0.615294 tig0000674:+26753 None:intergenic
TCTCCTGGCAACTAAAGCAA+AGG 0.615423 tig0000674:+24689 None:intergenic
GTAGAAATAAAACCCGGAGA+GGG 0.616226 tig0000674:-24772 Msa1335730:CDS
TATCACTTCTAGCGGCGGTG+AGG 0.618968 tig0000674:-26574 Msa1335730:CDS
AAAGTCTGATTGTCAGAGGA+TGG 0.619234 tig0000674:-29038 Msa1335730:CDS
TCTGATTGTCAGAGGATGGT+TGG 0.621776 tig0000674:-29034 Msa1335730:CDS
AGGTTGGTCGTTTAAATACA+GGG 0.623903 tig0000674:-26554 Msa1335730:CDS
CAGAGAGTTCAAATTCCACC+TGG 0.625506 tig0000674:+29339 None:intergenic
GATAACGAGCCGGCCTCCAG+CGG 0.626646 tig0000674:+25435 None:intergenic
GTACTAGAATCTTCTGAAGG+AGG 0.627636 tig0000674:-26746 Msa1335730:CDS
TGGCAACTAAAGCAAAGGAA+AGG 0.629817 tig0000674:+24694 None:intergenic
TGCGTACTAGAATCTTCTGA+AGG 0.633378 tig0000674:-26749 Msa1335730:CDS
CATGCCACGACAACAATCAA+GGG 0.635389 tig0000674:+25372 None:intergenic
CCACCGGGCCAACATCTCAA+AGG 0.638238 tig0000674:+25900 None:intergenic
TGTCAAGTAGAAATAAAACC+CGG 0.639616 tig0000674:-24778 Msa1335730:CDS
AGAATACATGGAGCCAGATG+TGG 0.640882 tig0000674:-24985 Msa1335730:CDS
TGGACAAAGTAAGAAAGGAG+AGG 0.644392 tig0000674:-29074 Msa1335730:CDS
CCTTTGAGATGTTGGCCCGG+TGG 0.645181 tig0000674:-25900 Msa1335730:CDS
GGAGCAGGTGGCTTCTCCTG+AGG 0.645509 tig0000674:+25095 None:intergenic
CATCACTGCAGATAACGAGC+CGG 0.646831 tig0000674:+25425 None:intergenic
AGTAGAAATAAAACCCGGAG+AGG 0.647411 tig0000674:-24773 Msa1335730:CDS
CCATCCTTCTATAATCACAA+AGG 0.652760 tig0000674:+26805 None:intergenic
GACTCCCTTCTATCATCACA+GGG 0.657826 tig0000674:-24433 Msa1335730:three_prime_UTR
TTGTCGTGGCATGTCAGCAG+AGG 0.661195 tig0000674:-25362 Msa1335730:CDS
CTGACAATCAGACTTTAACA+AGG 0.663137 tig0000674:+29045 None:intergenic
AGGGTTCGTATCACTTCTAG+CGG 0.670269 tig0000674:-26582 Msa1335730:CDS
GTAGTGGAGCTGTATGAGGA+AGG 0.670367 tig0000674:-24963 Msa1335730:CDS
GAGGGTATTTCAGTACATGA+GGG 0.676102 tig0000674:-24754 Msa1335730:CDS
GTTGGTCGTTTAAATACAGG+GGG 0.676730 tig0000674:-26552 Msa1335730:CDS
GTTCGTATCACTTCTAGCGG+CGG 0.677465 tig0000674:-26579 Msa1335730:CDS
GGTTGGTCGTTTAAATACAG+GGG 0.683229 tig0000674:-26553 Msa1335730:CDS
CAGATCTTAACAGAGATGAG+TGG 0.687097 tig0000674:-28316 Msa1335730:CDS
AAAGGAAAGGTCCATCCCAG+GGG 0.692540 tig0000674:+24707 None:intergenic
GGGAAAGAACAATGTCTGTG+AGG 0.706298 tig0000674:-29192 Msa1335730:exon
ATCGTGATAGCATATAACTG+CGG 0.706352 tig0000674:-29290 Msa1335730:five_prime_UTR
ATTTCAGATAGACTTAGCAG+CGG 0.708774 tig0000674:-24551 Msa1335730:intron
GCTCTGCTATGCTTTCAGAG+AGG 0.715140 tig0000674:-24941 Msa1335730:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATCATTATTATTAATAA+CGG - tig0000674:24480-24499 Msa1335730:three_prime_UTR 10.0%
!! TAATATAGATGTTAAATAAT+AGG - tig0000674:25798-25817 Msa1335730:intron 10.0%
!! AATATAGATGTTAAATAATA+GGG - tig0000674:25799-25818 Msa1335730:intron 10.0%
!!! ATTTTTATTTTTAATGAGTA+TGG - tig0000674:25961-25980 Msa1335730:intron 10.0%
!!! ATTATTACCATTCTATTTTA+TGG - tig0000674:25121-25140 Msa1335730:CDS 15.0%
!! TTATACAAATAATTAACAGA+CGG + tig0000674:25679-25698 None:intergenic 15.0%
!!! AAAAATATTCACAAATGTTT+TGG + tig0000674:25747-25766 None:intergenic 15.0%
!! ATATAGATGTTAAATAATAG+GGG - tig0000674:25800-25819 Msa1335730:intron 15.0%
!! TATATATAACCATATTTGTT+AGG - tig0000674:26039-26058 Msa1335730:intron 15.0%
!!! TTGTGTTTTTAAATAGAATA+AGG - tig0000674:26690-26709 Msa1335730:intron 15.0%
!!! TGTAGATCATTTTTTATTTT+TGG - tig0000674:27198-27217 Msa1335730:intron 15.0%
!! ACTATACTGTTAATATTATA+TGG + tig0000674:27596-27615 None:intergenic 15.0%
!!! TTTTTACATATTTCTTTTTC+TGG - tig0000674:29623-29642 Msa1335730:intron 15.0%
!!! TTTTACATATTTCTTTTTCT+GGG - tig0000674:29624-29643 Msa1335730:intron 15.0%
!! AACAACAATAACAATAACAA+TGG - tig0000674:23980-23999 Msa1335730:three_prime_UTR 20.0%
!!! TGTTTTTGTTCATTTTTTCA+TGG + tig0000674:24371-24390 None:intergenic 20.0%
!! TCTATACATATTCTGTTTAT+GGG - tig0000674:24864-24883 Msa1335730:intron 20.0%
!! ACAAAATCACTAATTGAATA+TGG + tig0000674:24903-24922 None:intergenic 20.0%
!! TTAATTACATGATTACTGTT+TGG - tig0000674:25078-25097 Msa1335730:CDS 20.0%
!! AAACAAAACCATAACAATTA+GGG + tig0000674:25317-25336 None:intergenic 20.0%
!! TAAACAAAACCATAACAATT+AGG + tig0000674:25318-25337 None:intergenic 20.0%
!!! TTTTGGTAATATTACCATTA+AGG + tig0000674:25730-25749 None:intergenic 20.0%
!! AAATACAAAAGATTATACCA+AGG + tig0000674:25866-25885 None:intergenic 20.0%
!!! TATTTTTAATGAGTATGGTT+AGG - tig0000674:25966-25985 Msa1335730:intron 20.0%
!! TTGTAAATGATAATAGATGA+GGG - tig0000674:25989-26008 Msa1335730:intron 20.0%
!! TGTGATAGATCTTAATAATT+TGG + tig0000674:26936-26955 None:intergenic 20.0%
!! CAAAAATATACGAGTTAAAA+AGG + tig0000674:27373-27392 None:intergenic 20.0%
!! GTTAATATTACTGATATAAC+TGG - tig0000674:27913-27932 Msa1335730:intron 20.0%
!!! TCATTTTATGATTTGTTTTG+TGG - tig0000674:28576-28595 Msa1335730:intron 20.0%
!!! CATTTTATGATTTGTTTTGT+GGG - tig0000674:28577-28596 Msa1335730:intron 20.0%
!! TTATATTGACAAAGAATACA+TGG - tig0000674:28870-28889 Msa1335730:intron 20.0%
!!! TTTCATTATGTATTTTCATG+AGG + tig0000674:29483-29502 None:intergenic 20.0%
!! TTGTTAGAAAAATTCTAACA+TGG - tig0000674:29515-29534 Msa1335730:intron 20.0%
!! AAAGAATAAATCATTCGAAA+AGG + tig0000674:29794-29813 None:intergenic 20.0%
!! CATTACTGTTATTACAAAAA+AGG + tig0000674:29890-29909 None:intergenic 20.0%
!! GTTATTGTTATTGTTGTTGA+AGG + tig0000674:23978-23997 None:intergenic 25.0%
!!! TTTTGTTCATTTTTTCATGG+AGG + tig0000674:24368-24387 None:intergenic 25.0%
!!! TTTGTTTTGTTTCGTTATTC+AGG - tig0000674:24449-24468 Msa1335730:three_prime_UTR 25.0%
!!! AATTTGAGGATTTTTTAGGA+GGG - tig0000674:24654-24673 Msa1335730:intron 25.0%
! GTCTATACATATTCTGTTTA+TGG - tig0000674:24863-24882 Msa1335730:intron 25.0%
! CTATACATATTCTGTTTATG+GGG - tig0000674:24865-24884 Msa1335730:intron 25.0%
!!! ATTAGTGATTTTGTTATTGC+AGG - tig0000674:24909-24928 Msa1335730:intron 25.0%
! TTTGGAAAATTTATCTGAAC+TGG - tig0000674:25096-25115 Msa1335730:CDS 25.0%
!! TTTTACTTACAGCTATTTGA+TGG - tig0000674:25457-25476 Msa1335730:intron 25.0%
!!! TTTTATTTTGATCTATCACC+CGG - tig0000674:25763-25782 Msa1335730:intron 25.0%
! TTAAATAATAGGGGAAGAAA+AGG - tig0000674:25809-25828 Msa1335730:intron 25.0%
! GTTGTAAATGATAATAGATG+AGG - tig0000674:25988-26007 Msa1335730:intron 25.0%
!! ATAACCATATTTGTTAGGAT+TGG - tig0000674:26044-26063 Msa1335730:intron 25.0%
!! TAACCATATTTGTTAGGATT+GGG - tig0000674:26045-26064 Msa1335730:intron 25.0%
! AAATCTTAAAAATTCCTGTC+AGG - tig0000674:26232-26251 Msa1335730:intron 25.0%
! AACAAATGTTAGTATTGTGT+GGG + tig0000674:26380-26399 None:intergenic 25.0%
! AAACAAATGTTAGTATTGTG+TGG + tig0000674:26381-26400 None:intergenic 25.0%
! CTAACATTTGTTTACTCATA+TGG - tig0000674:26388-26407 Msa1335730:intron 25.0%
! TAAATCATGTGCTAACTATA+CGG + tig0000674:26415-26434 None:intergenic 25.0%
!!! TGACATATTAGAGTATTGTA+TGG - tig0000674:26571-26590 Msa1335730:CDS 25.0%
! AATAAGGATATCTCATGTAA+AGG - tig0000674:26706-26725 Msa1335730:CDS 25.0%
!!! TCCAGCAATACTTTAATTTT+TGG - tig0000674:27470-27489 Msa1335730:intron 25.0%
!!! ACCAAAAATTAAAGTATTGC+TGG + tig0000674:27474-27493 None:intergenic 25.0%
! ACTGTTAATATTATATGGAC+TGG + tig0000674:27591-27610 None:intergenic 25.0%
!! AAACATTTTACAACCTTTCT+TGG - tig0000674:27634-27653 Msa1335730:intron 25.0%
!! GTTTAGAATCTTTAGATGAT+AGG - tig0000674:27665-27684 Msa1335730:intron 25.0%
! TTCTCTTGGTAAAATACATA+GGG + tig0000674:27701-27720 None:intergenic 25.0%
! TTTCTCTTGGTAAAATACAT+AGG + tig0000674:27702-27721 None:intergenic 25.0%
!! ATTTTACCAAGAGAAATACT+AGG - tig0000674:27706-27725 Msa1335730:intron 25.0%
!! TTTAACACTCACTCTTTTAT+TGG - tig0000674:27736-27755 Msa1335730:intron 25.0%
!! TTAACACTCACTCTTTTATT+GGG - tig0000674:27737-27756 Msa1335730:intron 25.0%
!! ATGCAAAAATCTTCTAAAGA+GGG + tig0000674:27889-27908 None:intergenic 25.0%
!! AATGCAAAAATCTTCTAAAG+AGG + tig0000674:27890-27909 None:intergenic 25.0%
! ATCAAATGATTGAATTCTTG+AGG - tig0000674:28318-28337 Msa1335730:CDS 25.0%
! TCAAATGATTGAATTCTTGA+GGG - tig0000674:28319-28338 Msa1335730:CDS 25.0%
! TAATATATCGACAACAATAC+AGG + tig0000674:28752-28771 None:intergenic 25.0%
! ATATAGACCTTTAATGAAAG+TGG - tig0000674:29685-29704 Msa1335730:intron 25.0%
! CACAATTGTAATGTGATATA+GGG - tig0000674:29713-29732 Msa1335730:intron 25.0%
! CAGTATAATTGATCTATGAA+TGG + tig0000674:29754-29773 None:intergenic 25.0%
! TCATAGATCAATTATACTGT+AGG - tig0000674:29755-29774 Msa1335730:five_prime_UTR 25.0%
!!! TCTGATTTTGATAATTCCTT+TGG - tig0000674:29819-29838 Msa1335730:five_prime_UTR 25.0%
AAGAATATTTGCAAAACGCT+GGG - tig0000674:24006-24025 Msa1335730:three_prime_UTR 30.0%
GAAATGAGAAGATGATGAAT+TGG + tig0000674:24061-24080 None:intergenic 30.0%
AGAGATTTGAAAATGGAGAA+TGG + tig0000674:24153-24172 None:intergenic 30.0%
CAAAATATAGAGAAAGCGAT+TGG + tig0000674:24322-24341 None:intergenic 30.0%
!!! CGAGAATTTGAGGATTTTTT+AGG - tig0000674:24650-24669 Msa1335730:intron 30.0%
!!! GAATTTGAGGATTTTTTAGG+AGG - tig0000674:24653-24672 Msa1335730:intron 30.0%
!!! ATTTGAGGATTTTTTAGGAG+GGG - tig0000674:24655-24674 Msa1335730:intron 30.0%
AGTCAAGCCATAAAATAGAA+TGG + tig0000674:25131-25150 None:intergenic 30.0%
!! ATGCTATTGATTTCATCTTG+TGG - tig0000674:25201-25220 Msa1335730:intron 30.0%
ATAGATTCATTGACGATACA+CGG - tig0000674:25238-25257 Msa1335730:intron 30.0%
TTATTTGCACTCATCTTAGT+TGG - tig0000674:25335-25354 Msa1335730:intron 30.0%
CACTTACGACATTATTTAGA+AGG + tig0000674:25522-25541 None:intergenic 30.0%
! GATAAAGATTTTGCAGAGAA+AGG - tig0000674:25619-25638 Msa1335730:intron 30.0%
AGCAAATTAATCTGCATCAA+TGG - tig0000674:25701-25720 Msa1335730:intron 30.0%
!!! TTTATTTTGATCTATCACCC+GGG - tig0000674:25764-25783 Msa1335730:intron 30.0%
TTAAAAATTCCTGTCAGGTT+TGG - tig0000674:26237-26256 Msa1335730:intron 30.0%
!! TTAGCACATGATTTAAGTTG+TGG - tig0000674:26420-26439 Msa1335730:intron 30.0%
ACATATACTTGTCTAATAGG+CGG + tig0000674:26624-26643 None:intergenic 30.0%
CTGACATATACTTGTCTAAT+AGG + tig0000674:26627-26646 None:intergenic 30.0%
CTATTAGACAAGTATATGTC+AGG - tig0000674:26625-26644 Msa1335730:intron 30.0%
GCATATGGAACTACTTATTT+GGG + tig0000674:26657-26676 None:intergenic 30.0%
TGCATATGGAACTACTTATT+TGG + tig0000674:26658-26677 None:intergenic 30.0%
TACAACTTTACAAGTACTCT+AGG + tig0000674:26781-26800 None:intergenic 30.0%
AGAATATTATTGAATGCCTG+CGG + tig0000674:26878-26897 None:intergenic 30.0%
ATTTGGCAAGTAACTAGATA+TGG + tig0000674:26919-26938 None:intergenic 30.0%
TCTATCACATTAACTAGTCA+TGG - tig0000674:26947-26966 Msa1335730:intron 30.0%
AGTCATGGAAGTTATTAAGA+TGG - tig0000674:26962-26981 Msa1335730:intron 30.0%
! CTTCTCTATTTTGTCATTAC+AGG - tig0000674:27016-27035 Msa1335730:intron 30.0%
CTTTGTGATTATAGAAGGAT+GGG - tig0000674:27063-27082 Msa1335730:intron 30.0%
CTGATGAAAATGAAAAAGAG+GGG + tig0000674:27264-27283 None:intergenic 30.0%
CCTGATGAAAATGAAAAAGA+GGG + tig0000674:27265-27284 None:intergenic 30.0%
TCCTGATGAAAATGAAAAAG+AGG + tig0000674:27266-27285 None:intergenic 30.0%
!! TCTTTTTCATTTTCATCAGG+AGG - tig0000674:27265-27284 Msa1335730:intron 30.0%
!! CTTTTTCATTTTCATCAGGA+GGG - tig0000674:27266-27285 Msa1335730:intron 30.0%
TCTGATTATGTGGTTTAACA+TGG + tig0000674:27509-27528 None:intergenic 30.0%
TAAACAAGAGTTTCCAAGAA+AGG + tig0000674:27650-27669 None:intergenic 30.0%
TCTCTTGGTAAAATACATAG+GGG + tig0000674:27700-27719 None:intergenic 30.0%
CTAATACTCAGTCTCTTATT+GGG + tig0000674:27831-27850 None:intergenic 30.0%
TCTAATACTCAGTCTCTTAT+TGG + tig0000674:27832-27851 None:intergenic 30.0%
! AAATCTTCTAAAGAGGGTAT+TGG + tig0000674:27883-27902 None:intergenic 30.0%
TCTATTGGAGATATGGATAT+TGG - tig0000674:28006-28025 Msa1335730:intron 30.0%
!!! CTTGTTTTACATATGGTACA+GGG + tig0000674:28044-28063 None:intergenic 30.0%
!!! ACTTGTTTTACATATGGTAC+AGG + tig0000674:28045-28064 None:intergenic 30.0%
ACCATATGTAAAACAAGTGA+AGG - tig0000674:28047-28066 Msa1335730:intron 30.0%
!!! ACCTTCACTTGTTTTACATA+TGG + tig0000674:28051-28070 None:intergenic 30.0%
!! ATATTTTTGTATGCCTGTGT+GGG + tig0000674:28196-28215 None:intergenic 30.0%
!! TATATTTTTGTATGCCTGTG+TGG + tig0000674:28197-28216 None:intergenic 30.0%
!! TCAAAGTTTCTGAAACATTG+TGG + tig0000674:28296-28315 None:intergenic 30.0%
ACAATGTTTCAGAAACTTTG+AGG - tig0000674:28295-28314 Msa1335730:CDS 30.0%
CAAATGATTGAATTCTTGAG+GGG - tig0000674:28320-28339 Msa1335730:CDS 30.0%
!! TATCTCACTTTTACAATCTG+TGG + tig0000674:28539-28558 None:intergenic 30.0%
ATCATAGTGGTATGAAACTA+TGG - tig0000674:28642-28661 Msa1335730:intron 30.0%
CATGTTTCGTAAAAAGTCTT+CGG - tig0000674:28837-28856 Msa1335730:intron 30.0%
TGTCAAGTAGAAATAAAACC+CGG - tig0000674:29089-29108 Msa1335730:CDS 30.0%
TAGATTATGGACACATTTCA+AGG + tig0000674:29275-29294 None:intergenic 30.0%
!! CAAGATAGTGGATTAGATTA+TGG + tig0000674:29288-29307 None:intergenic 30.0%
CATAATCTAATCCACTATCT+TGG - tig0000674:29286-29305 Msa1335730:five_prime_UTR 30.0%
AAATGAAAAGACCAAGATAG+TGG + tig0000674:29300-29319 None:intergenic 30.0%
ATCAAAATTGTTCATTCGAC+TGG - tig0000674:29382-29401 Msa1335730:intron 30.0%
! TTTTTCTAACAAACTGCTGT+TGG + tig0000674:29507-29526 None:intergenic 30.0%
! ATTCTAACATGGAAGTGTAA+TGG - tig0000674:29526-29545 Msa1335730:intron 30.0%
TTCATTGTATATGGGTCATT+TGG - tig0000674:29652-29671 Msa1335730:intron 30.0%
CCTATATCACATTACAATTG+TGG + tig0000674:29715-29734 None:intergenic 30.0%
CCACAATTGTAATGTGATAT+AGG - tig0000674:29712-29731 Msa1335730:intron 30.0%
GAAGAATATTTGCAAAACGC+TGG - tig0000674:24005-24024 Msa1335730:three_prime_UTR 35.0%
GAGGAAGAAGAAGAAGAAAA+CGG + tig0000674:24115-24134 None:intergenic 35.0%
AAAATGGAGAATGGAGAAAG+AGG + tig0000674:24144-24163 None:intergenic 35.0%
GAGAGAGAGAGATTTGAAAA+TGG + tig0000674:24160-24179 None:intergenic 35.0%
GAAAACGAAAGCGAGAAAAA+CGG + tig0000674:24267-24286 None:intergenic 35.0%
AATACAATGAACGACGTTGA+TGG + tig0000674:24295-24314 None:intergenic 35.0%
! AATGATCATTTTACCTGTCC+AGG - tig0000674:24510-24529 Msa1335730:three_prime_UTR 35.0%
ATCGTGATAGCATATAACTG+CGG - tig0000674:24577-24596 Msa1335730:intron 35.0%
CTGACAATCAGACTTTAACA+AGG + tig0000674:24825-24844 None:intergenic 35.0%
TGTTAAAGTCTGATTGTCAG+AGG - tig0000674:24825-24844 Msa1335730:CDS 35.0%
CGAGAGAAAAAAACGAGATT+AGG - tig0000674:25158-25177 Msa1335730:CDS 35.0%
ATTAGGTATCATTGCAAGGA+TGG - tig0000674:25175-25194 Msa1335730:intron 35.0%
GAACAGTTCCCTAATTGTTA+TGG - tig0000674:25306-25325 Msa1335730:intron 35.0%
CAATGCATTCAGTGCATAAA+TGG + tig0000674:25380-25399 None:intergenic 35.0%
AGGGAAAACACACAAAAACT+CGG + tig0000674:25414-25433 None:intergenic 35.0%
CACATGAGAAAATGAAACCA+GGG + tig0000674:25433-25452 None:intergenic 35.0%
! TGCTGCTGCTATTTATTCTA+AGG - tig0000674:25492-25511 Msa1335730:intron 35.0%
! AGATTTTGCAGAGAAAGGTA+TGG - tig0000674:25624-25643 Msa1335730:intron 35.0%
!!! TTATTTTGATCTATCACCCG+GGG - tig0000674:25765-25784 Msa1335730:intron 35.0%
!!! TGCTGTGTATTTTGAAACCT+TGG - tig0000674:25846-25865 Msa1335730:CDS 35.0%
GATCTAGTGTCAAATCTTCA+GGG + tig0000674:25896-25915 None:intergenic 35.0%
!! AAAAATGCCCTGCTTTGAAA+AGG + tig0000674:26019-26038 None:intergenic 35.0%
!! TCTTTGCCTATTTTAGACTC+TGG - tig0000674:26097-26116 Msa1335730:intron 35.0%
AATTTGTATAGTCGAGCCAA+AGG + tig0000674:26180-26199 None:intergenic 35.0%
CTTCCTTGATTAAAGCTTGT+AGG - tig0000674:26281-26300 Msa1335730:intron 35.0%
AAATGTTAGTATTGTGTGGG+AGG + tig0000674:26377-26396 None:intergenic 35.0%
!! TTTAAGTTGTGGACTACATC+AGG - tig0000674:26431-26450 Msa1335730:intron 35.0%
!!! GTTTTAAAATGTGGTTGCAG+TGG + tig0000674:26537-26556 None:intergenic 35.0%
!!! TAGCACGTGGTTTTAAAATG+TGG + tig0000674:26546-26565 None:intergenic 35.0%
!! GAGTATTGTATGGTTGATGA+AGG - tig0000674:26581-26600 Msa1335730:CDS 35.0%
AACACGCTAACAAATGCATA+TGG + tig0000674:26672-26691 None:intergenic 35.0%
! ATATCTCATGTAAAGGCATG+TGG - tig0000674:26713-26732 Msa1335730:CDS 35.0%
CATTTGAATAATTGCACTGC+TGG - tig0000674:26843-26862 Msa1335730:intron 35.0%
GCAAGTAACTAGATATGGAA+TGG + tig0000674:26914-26933 None:intergenic 35.0%
GTCATTACAGGACAAAAATC+AGG - tig0000674:27028-27047 Msa1335730:intron 35.0%
GTCACCTTTGTGATTATAGA+AGG - tig0000674:27058-27077 Msa1335730:intron 35.0%
CCATCCTTCTATAATCACAA+AGG + tig0000674:27065-27084 None:intergenic 35.0%
CCTTTGTGATTATAGAAGGA+TGG - tig0000674:27062-27081 Msa1335730:intron 35.0%
! TACTAGAATCTTCTGAAGGA+GGG - tig0000674:27122-27141 Msa1335730:intron 35.0%
ATTACTTGTCAGCAGATCAT+AGG - tig0000674:27149-27168 Msa1335730:intron 35.0%
!!! ATTTTTGGTGAGCAACTGTT+TGG - tig0000674:27213-27232 Msa1335730:intron 35.0%
!! CCCTCTTTTTCATTTTCATC+AGG - tig0000674:27262-27281 Msa1335730:intron 35.0%
! AGGTTGGTCGTTTAAATACA+GGG - tig0000674:27313-27332 Msa1335730:intron 35.0%
! TTTATCTTTGGAAGAGAGTG+GGG + tig0000674:27416-27435 None:intergenic 35.0%
! CTTTATCTTTGGAAGAGAGT+GGG + tig0000674:27417-27436 None:intergenic 35.0%
! TCTTTATCTTTGGAAGAGAG+TGG + tig0000674:27418-27437 None:intergenic 35.0%
CTTCCAAAGATAAAGAGAAG+AGG - tig0000674:27422-27441 Msa1335730:intron 35.0%
TGTCCTCTTCTCTTTATCTT+TGG + tig0000674:27428-27447 None:intergenic 35.0%
GGTTTAACATGGCAAACATT+GGG + tig0000674:27498-27517 None:intergenic 35.0%
TGGTTTAACATGGCAAACAT+TGG + tig0000674:27499-27518 None:intergenic 35.0%
ACTCTTCATCTCTGATTATG+TGG + tig0000674:27519-27538 None:intergenic 35.0%
AGTGTTCCTAGTATTTCTCT+TGG + tig0000674:27715-27734 None:intergenic 35.0%
!! AAGAGGGTATTGGTAAAATG+AGG + tig0000674:27873-27892 None:intergenic 35.0%
! ACTAGGTTAAGGATTTTTGC+AGG - tig0000674:27939-27958 Msa1335730:intron 35.0%
GTCAACTCAATCTTACACAT+AGG - tig0000674:28073-28092 Msa1335730:intron 35.0%
TAAGTAACCTTGAGAGCAAA+CGG + tig0000674:28142-28161 None:intergenic 35.0%
!! TCTTTTGATTAATCCCACAC+AGG - tig0000674:28180-28199 Msa1335730:intron 35.0%
AAATGCACACAAGGATTTCT+TGG + tig0000674:28367-28386 None:intergenic 35.0%
CATTCAGAAAAATGCACACA+AGG + tig0000674:28376-28395 None:intergenic 35.0%
TACCACTATGATGTTGAAGT+CGG + tig0000674:28634-28653 None:intergenic 35.0%
TCACTTCACTTAATGTCTTC+AGG - tig0000674:28690-28709 Msa1335730:intron 35.0%
TGTTGTCGATATATTACCTC+AGG - tig0000674:28756-28775 Msa1335730:intron 35.0%
!!! TTTACTGGCTTCTTTTGATG+TGG + tig0000674:28802-28821 None:intergenic 35.0%
CATCAAAAGAAGCCAGTAAA+AGG - tig0000674:28802-28821 Msa1335730:intron 35.0%
! CGAAGACTTTTTACGAAACA+TGG + tig0000674:28839-28858 None:intergenic 35.0%
! AGAATGCTCGTTTAAAATGC+AGG - tig0000674:29012-29031 Msa1335730:CDS 35.0%
AACTTGAACATGTTGCATAG+TGG + tig0000674:29053-29072 None:intergenic 35.0%
! TAATGATCTTTTCCCTTCCA+TGG + tig0000674:29213-29232 None:intergenic 35.0%
ATGGAAGGGAAAAGATCATT+AGG - tig0000674:29212-29231 Msa1335730:five_prime_UTR 35.0%
ATTTCAGATAGACTTAGCAG+CGG - tig0000674:29316-29335 Msa1335730:five_prime_UTR 35.0%
! AGGGCTTTATGGATCTAATT+TGG - tig0000674:29453-29472 Msa1335730:intron 35.0%
CTCAACCTTTCACAAAACTT+GGG + tig0000674:29558-29577 None:intergenic 35.0%
ACTCAACCTTTCACAAAACT+TGG + tig0000674:29559-29578 None:intergenic 35.0%
GTGAAAGGTTGAGTTATAAG+TGG - tig0000674:29565-29584 Msa1335730:intron 35.0%
TGGGATCAGTTCATTGTATA+TGG - tig0000674:29643-29662 Msa1335730:intron 35.0%
GGGATCAGTTCATTGTATAT+GGG - tig0000674:29644-29663 Msa1335730:intron 35.0%
TGGAAGACCACTTTCATTAA+AGG + tig0000674:29695-29714 None:intergenic 35.0%
TACAAGACCCAATCTTCATA+TGG + tig0000674:29845-29864 None:intergenic 35.0%
GAAAGCGAGAAAAACGGTAA+TGG + tig0000674:24261-24280 None:intergenic 40.0%
! TGGTTGGTATCGAGAATTTG+AGG - tig0000674:24640-24659 Msa1335730:intron 40.0%
CTCTTTCGGTTCTATTGAAG+CGG - tig0000674:24720-24739 Msa1335730:CDS 40.0%
TCTTTCGGTTCTATTGAAGC+GGG - tig0000674:24721-24740 Msa1335730:CDS 40.0%
GAGAAACCTGAGATTGTTCA+TGG - tig0000674:24764-24783 Msa1335730:CDS 40.0%
CAAGCTGGACAAAGTAAGAA+AGG - tig0000674:24788-24807 Msa1335730:CDS 40.0%
TGGACAAAGTAAGAAAGGAG+AGG - tig0000674:24793-24812 Msa1335730:CDS 40.0%
AAAGTCTGATTGTCAGAGGA+TGG - tig0000674:24829-24848 Msa1335730:CDS 40.0%
CGAGATTAGGTATCATTGCA+AGG - tig0000674:25171-25190 Msa1335730:intron 40.0%
! GAGTTTTTGTGTGTTTTCCC+TGG - tig0000674:25413-25432 Msa1335730:CDS 40.0%
CCACATGAGAAAATGAAACC+AGG + tig0000674:25434-25453 None:intergenic 40.0%
! CCTGGTTTCATTTTCTCATG+TGG - tig0000674:25431-25450 Msa1335730:CDS 40.0%
! CAGCTATTTGATGGACACAA+TGG - tig0000674:25466-25485 Msa1335730:intron 40.0%
TCATCTCTGTTAAGATCTGG+AGG + tig0000674:25550-25569 None:intergenic 40.0%
CACTCATCTCTGTTAAGATC+TGG + tig0000674:25553-25572 None:intergenic 40.0%
CAGATCTTAACAGAGATGAG+TGG - tig0000674:25551-25570 Msa1335730:intron 40.0%
TGCATCAATGGCAACCTTAA+TGG - tig0000674:25713-25732 Msa1335730:intron 40.0%
! TATATTACTCTGAGAAGCCC+CGG + tig0000674:25785-25804 None:intergenic 40.0%
GGATCTAGTGTCAAATCTTC+AGG + tig0000674:25897-25916 None:intergenic 40.0%
! GTGATAGCTTTGCTCTCAAA+AGG + tig0000674:25918-25937 None:intergenic 40.0%
GTGCCCAATCCTAACAAATA+TGG + tig0000674:26051-26070 None:intergenic 40.0%
! TATTTGTTAGGATTGGGCAC+TGG - tig0000674:26051-26070 Msa1335730:intron 40.0%
! TCGTGTCCAGAGTCTAAAAT+AGG + tig0000674:26106-26125 None:intergenic 40.0%
CAATGTCGCATTGTTAAAGC+TGG + tig0000674:26157-26176 None:intergenic 40.0%
TAACAATGCGACATTGCCTT+TGG - tig0000674:26161-26180 Msa1335730:intron 40.0%
! GTGCCTACAAGCTTTAATCA+AGG + tig0000674:26287-26306 None:intergenic 40.0%
ATTAAAGCTTGTAGGCACGT+AGG - tig0000674:26289-26308 Msa1335730:intron 40.0%
TAGGAGATGTACTGTTTGCT+TGG - tig0000674:26308-26327 Msa1335730:intron 40.0%
! TTGTTTGATGCGGACTAATG+TGG + tig0000674:26500-26519 None:intergenic 40.0%
GTGGGTATAGTTGTTTGATG+CGG + tig0000674:26510-26529 None:intergenic 40.0%
ATATGTCAACTACTAGCACG+TGG + tig0000674:26559-26578 None:intergenic 40.0%
! GTTGTCATTTGCCGTTGATT+GGG - tig0000674:26735-26754 Msa1335730:CDS 40.0%
GTTGTAACAGTTGCATCAGT+TGG - tig0000674:27085-27104 Msa1335730:intron 40.0%
TGCGTACTAGAATCTTCTGA+AGG - tig0000674:27118-27137 Msa1335730:intron 40.0%
! GTACTAGAATCTTCTGAAGG+AGG - tig0000674:27121-27140 Msa1335730:intron 40.0%
! GAGGTTGGTCGTTTAAATAC+AGG - tig0000674:27312-27331 Msa1335730:intron 40.0%
! GGTTGGTCGTTTAAATACAG+GGG - tig0000674:27314-27333 Msa1335730:intron 40.0%
GTTGGTCGTTTAAATACAGG+GGG - tig0000674:27315-27334 Msa1335730:intron 40.0%
!! TGGGGTGTTTAAGCTTGTTA+TGG + tig0000674:27398-27417 None:intergenic 40.0%
GAGTAATGTGAACCATACTG+TGG - tig0000674:27535-27554 Msa1335730:intron 40.0%
CCTCTCAATTTACCACAGTA+TGG + tig0000674:27550-27569 None:intergenic 40.0%
CCATACTGTGGTAAATTGAG+AGG - tig0000674:27547-27566 Msa1335730:intron 40.0%
TACTGTGGTAAATTGAGAGG+CGG - tig0000674:27550-27569 Msa1335730:intron 40.0%
! TTTTATTGGGTGACTCACGT+GGG - tig0000674:27750-27769 Msa1335730:intron 40.0%
GAAATGGCTCCTACATAAAG+TGG + tig0000674:27781-27800 None:intergenic 40.0%
! TGAATCCCACACTTTGGAAA+TGG + tig0000674:27797-27816 None:intergenic 40.0%
!! TGGTAAAATGAGGAGTGCTA+TGG + tig0000674:27863-27882 None:intergenic 40.0%
ACTGATATAACTGGCTGACT+AGG - tig0000674:27922-27941 Msa1335730:intron 40.0%
ATAACTGGCTGACTAGGTTA+AGG - tig0000674:27928-27947 Msa1335730:intron 40.0%
! GGTTAAGGATTTTTGCAGGT+TGG - tig0000674:27943-27962 Msa1335730:intron 40.0%
TTGTGTCTTTCACGGTCTAT+TGG - tig0000674:27991-28010 Msa1335730:intron 40.0%
TTCACGGTCTATTGGAGATA+TGG - tig0000674:27999-28018 Msa1335730:intron 40.0%
CTTACACATAGGACAGTGTT+TGG - tig0000674:28084-28103 Msa1335730:intron 40.0%
AAGTAACCTTGAGAGCAAAC+GGG + tig0000674:28141-28160 None:intergenic 40.0%
GCACGTAAAAGACAAAACAG+CGG + tig0000674:28238-28257 None:intergenic 40.0%
! TTATCTGCAGTGATGGTGTT+TGG - tig0000674:28450-28469 Msa1335730:intron 40.0%
! TATCTGCAGTGATGGTGTTT+GGG - tig0000674:28451-28470 Msa1335730:intron 40.0%
!!! TTGTGGGACTGTTTTGATGT+TGG - tig0000674:28593-28612 Msa1335730:intron 40.0%
!!! TGTGGGACTGTTTTGATGTT+GGG - tig0000674:28594-28613 Msa1335730:intron 40.0%
TTCCGACTTCAACATCATAG+TGG - tig0000674:28629-28648 Msa1335730:intron 40.0%
TCAGGAAGCTTTACAAGCAA+AGG - tig0000674:28708-28727 Msa1335730:intron 40.0%
CAGGAAGCTTTACAAGCAAA+GGG - tig0000674:28709-28728 Msa1335730:intron 40.0%
AGTAGAAATAAAACCCGGAG+AGG - tig0000674:29094-29113 Msa1335730:CDS 40.0%
GTAGAAATAAAACCCGGAGA+GGG - tig0000674:29095-29114 Msa1335730:CDS 40.0%
ATGTACTGAAATACCCTCTC+CGG + tig0000674:29111-29130 None:intergenic 40.0%
!! AGAGGGTATTTCAGTACATG+AGG - tig0000674:29112-29131 Msa1335730:CDS 40.0%
!! GAGGGTATTTCAGTACATGA+GGG - tig0000674:29113-29132 Msa1335730:CDS 40.0%
TGGCAACTAAAGCAAAGGAA+AGG + tig0000674:29176-29195 None:intergenic 40.0%
TTTCCTTTGCTTTAGTTGCC+AGG - tig0000674:29175-29194 Msa1335730:CDS 40.0%
AGAAGAAAGAAGCCATGGAA+GGG - tig0000674:29198-29217 Msa1335730:exon 40.0%
GAAGATGGACAGAAATGAAG+AGG + tig0000674:29253-29272 None:intergenic 40.0%
TGGACACATTTCAAGGAAGA+TGG + tig0000674:29268-29287 None:intergenic 40.0%
AAAGCCCTGTGATGATAGAA+GGG + tig0000674:29441-29460 None:intergenic 40.0%
TAAAGCCCTGTGATGATAGA+AGG + tig0000674:29442-29461 None:intergenic 40.0%
TCTATCATCACAGGGCTTTA+TGG - tig0000674:29442-29461 Msa1335730:intron 40.0%
!! AACCACCCAAGTTTTGTGAA+AGG - tig0000674:29550-29569 Msa1335730:intron 40.0%
AACCTTTCACAAAACTTGGG+TGG + tig0000674:29555-29574 None:intergenic 40.0%
TATAAGTGGCAGTTCACAAC+AGG - tig0000674:29579-29598 Msa1335730:intron 40.0%
TCCTTTGGCCATATGAAGAT+TGG - tig0000674:29834-29853 Msa1335730:five_prime_UTR 40.0%
CCTTTGGCCATATGAAGATT+GGG - tig0000674:29835-29854 Msa1335730:five_prime_UTR 40.0%
TGTGTGATCCAAAAACGACG+CGG + tig0000674:24034-24053 None:intergenic 45.0%
!! ACGGTGTCGTTTAGATGATC+AGG + tig0000674:24096-24115 None:intergenic 45.0%
!! ATGGAGAAAGAGGTGTTACG+AGG + tig0000674:24134-24153 None:intergenic 45.0%
! GAGAAAAACGGTAATGGTCG+AGG + tig0000674:24255-24274 None:intergenic 45.0%
! GATCATTTTACCTGTCCAGG+TGG - tig0000674:24513-24532 Msa1335730:three_prime_UTR 45.0%
AGTTCAAATTCCACCTGGAC+AGG + tig0000674:24526-24545 None:intergenic 45.0%
CAGAGAGTTCAAATTCCACC+TGG + tig0000674:24531-24550 None:intergenic 45.0%
CAGGTGGAATTTGAACTCTC+TGG - tig0000674:24529-24548 Msa1335730:exon 45.0%
! AAAGAAGTGCGCATTGTCGT+TGG - tig0000674:24607-24626 Msa1335730:intron 45.0%
! TTGTCGTTGGTTGACTCTAG+TGG - tig0000674:24620-24639 Msa1335730:intron 45.0%
GGGAAAGAACAATGTCTGTG+AGG - tig0000674:24675-24694 Msa1335730:CDS 45.0%
GAGGAGTGAACACCATCAAA+CGG - tig0000674:24694-24713 Msa1335730:CDS 45.0%
CCATCAAACGGTTCCTCTTT+CGG - tig0000674:24706-24725 Msa1335730:CDS 45.0%
CGCTTCAATAGAACCGAAAG+AGG + tig0000674:24722-24741 None:intergenic 45.0%
GCTTGACCATGAACAATCTC+AGG + tig0000674:24773-24792 None:intergenic 45.0%
GAGATTGTTCATGGTCAAGC+TGG - tig0000674:24773-24792 Msa1335730:CDS 45.0%
TCTGATTGTCAGAGGATGGT+TGG - tig0000674:24833-24852 Msa1335730:CDS 45.0%
AATCCAGCAACCAAAGCTCT+AGG + tig0000674:25589-25608 None:intergenic 45.0%
! ATATTACTCTGAGAAGCCCC+GGG + tig0000674:25784-25803 None:intergenic 45.0%
! AGGGAACTCCTTTTCAAAGC+AGG - tig0000674:26008-26027 Msa1335730:intron 45.0%
! GGGAACTCCTTTTCAAAGCA+GGG - tig0000674:26009-26028 Msa1335730:intron 45.0%
GCACTGGAATTGAACAGCTT+AGG - tig0000674:26067-26086 Msa1335730:intron 45.0%
GTTAGAGCTGATGCCTTAAC+AGG + tig0000674:26135-26154 None:intergenic 45.0%
AAACTGCTTCCAAACCTGAC+AGG + tig0000674:26249-26268 None:intergenic 45.0%
GAGATGTACTGTTTGCTTGG+TGG - tig0000674:26311-26330 Msa1335730:intron 45.0%
! TGTACTGTTTGCTTGGTGGT+TGG - tig0000674:26315-26334 Msa1335730:intron 45.0%
! GTACTGTTTGCTTGGTGGTT+GGG - tig0000674:26316-26335 Msa1335730:intron 45.0%
! TACTGTTTGCTTGGTGGTTG+GGG - tig0000674:26317-26336 Msa1335730:intron 45.0%
TGTTAGTATTGTGTGGGAGG+TGG + tig0000674:26374-26393 None:intergenic 45.0%
! GCGGACTAATGTGGTAACAT+TGG + tig0000674:26491-26510 None:intergenic 45.0%
GACAAGTATATGTCAGGCGT+AGG - tig0000674:26631-26650 Msa1335730:intron 45.0%
! GGTTGTCATTTGCCGTTGAT+TGG - tig0000674:26734-26753 Msa1335730:CDS 45.0%
AGAAGATTCTAGTACGCAGC+GGG + tig0000674:27116-27135 None:intergenic 45.0%
CAGAAGATTCTAGTACGCAG+CGG + tig0000674:27117-27136 None:intergenic 45.0%
AGGGTTCGTATCACTTCTAG+CGG - tig0000674:27285-27304 Msa1335730:intron 45.0%
ACTGTGGTAAATTGAGAGGC+GGG - tig0000674:27551-27570 Msa1335730:intron 45.0%
! CTTTTATTGGGTGACTCACG+TGG - tig0000674:27749-27768 Msa1335730:intron 45.0%
TGGGTCTCACCACTTTATGT+AGG - tig0000674:27769-27788 Msa1335730:intron 45.0%
TAGGAGCCATTTCCAAAGTG+TGG - tig0000674:27788-27807 Msa1335730:intron 45.0%
AGGAGCCATTTCCAAAGTGT+GGG - tig0000674:27789-27808 Msa1335730:intron 45.0%
TCCAAAGTGTGGGATTCACA+CGG - tig0000674:27799-27818 Msa1335730:intron 45.0%
!! AGGTTGGTCCTTTGAGATGT+TGG - tig0000674:27959-27978 Msa1335730:intron 45.0%
AGTAACCTTGAGAGCAAACG+GGG + tig0000674:28140-28159 None:intergenic 45.0%
ACAGCGGTGAAAATGTGTGT+AGG + tig0000674:28222-28241 None:intergenic 45.0%
CATGCCACGACAACAATCAA+GGG + tig0000674:28498-28517 None:intergenic 45.0%
ACATGCCACGACAACAATCA+AGG + tig0000674:28499-28518 None:intergenic 45.0%
! TTTTGATGTGGTACAGGAGC+AGG + tig0000674:28790-28809 None:intergenic 45.0%
! GGCTTCTTTTGATGTGGTAC+AGG + tig0000674:28796-28815 None:intergenic 45.0%
GCCAGTAAAAGGAATGCTCA+AGG - tig0000674:28813-28832 Msa1335730:intron 45.0%
! GCCTTGAGCATTCCTTTTAC+TGG + tig0000674:28817-28836 None:intergenic 45.0%
AGAATACATGGAGCCAGATG+TGG - tig0000674:28882-28901 Msa1335730:intron 45.0%
TGTACTGAAATACCCTCTCC+GGG + tig0000674:29110-29129 None:intergenic 45.0%
TCTCCTGGCAACTAAAGCAA+AGG + tig0000674:29181-29200 None:intergenic 45.0%
GAGAAGAAAGAAGCCATGGA+AGG - tig0000674:29197-29216 Msa1335730:exon 45.0%
TGACTCCCTTCTATCATCAC+AGG - tig0000674:29433-29452 Msa1335730:intron 45.0%
GACTCCCTTCTATCATCACA+GGG - tig0000674:29434-29453 Msa1335730:intron 45.0%
CCCAATCTTCATATGGCCAA+AGG + tig0000674:29838-29857 None:intergenic 45.0%
!! TGAACTCTCTGGCTTGCTTG+AGG - tig0000674:24540-24559 Msa1335730:CDS 50.0%
! CGTTGGTTGACTCTAGTGGT+TGG - tig0000674:24624-24643 Msa1335730:intron 50.0%
CCGAAAGAGGAACCGTTTGA+TGG + tig0000674:24709-24728 None:intergenic 50.0%
!! TGTCAGAGGATGGTTGGTGA+TGG - tig0000674:24839-24858 Msa1335730:intron 50.0%
!! GTCAGAGGATGGTTGGTGAT+GGG - tig0000674:24840-24859 Msa1335730:intron 50.0%
!! TCAGAGGATGGTTGGTGATG+GGG - tig0000674:24841-24860 Msa1335730:intron 50.0%
! TTGCCTAGAGCTTTGGTTGC+TGG - tig0000674:25583-25602 Msa1335730:intron 50.0%
GACACGAGTCTTGCCTGTTA+AGG - tig0000674:26119-26138 Msa1335730:intron 50.0%
! GTGGACTACATCAGGCAATG+TGG - tig0000674:26439-26458 Msa1335730:intron 50.0%
GCCTGGTATCTCCCAATCAA+CGG + tig0000674:26749-26768 None:intergenic 50.0%
! ACTCTAGGAACTAGAGAGCC+TGG + tig0000674:26766-26785 None:intergenic 50.0%
CTGCTGGAAGTTATAACCGC+AGG - tig0000674:26859-26878 Msa1335730:intron 50.0%
GTTCGTATCACTTCTAGCGG+CGG - tig0000674:27288-27307 Msa1335730:intron 50.0%
GGTCGTTTAAATACAGGGGG+AGG - tig0000674:27318-27337 Msa1335730:intron 50.0%
CCAAAGTGTGGGATTCACAC+GGG - tig0000674:27800-27819 Msa1335730:intron 50.0%
TCAATTCAGCTGTCTACCGC+TGG - tig0000674:28416-28435 Msa1335730:intron 50.0%
CATCACTGCAGATAACGAGC+CGG + tig0000674:28445-28464 None:intergenic 50.0%
GGATGCTTTACCTGCAGAAG+TGG - tig0000674:28472-28491 Msa1335730:intron 50.0%
TACAGCTCCACTACCACATC+TGG + tig0000674:28898-28917 None:intergenic 50.0%
!! TGTGGTAGTGGAGCTGTATG+AGG - tig0000674:28900-28919 Msa1335730:intron 50.0%
! GTAGTGGAGCTGTATGAGGA+AGG - tig0000674:28904-28923 Msa1335730:intron 50.0%
GCTCTGCTATGCTTTCAGAG+AGG - tig0000674:28926-28945 Msa1335730:intron 50.0%
AAAGGAAAGGTCCATCCCAG+GGG + tig0000674:29163-29182 None:intergenic 50.0%
CAAAGGAAAGGTCCATCCCA+GGG + tig0000674:29164-29183 None:intergenic 50.0%
CCATGGCTTCTTTCTTCTCC+TGG + tig0000674:29196-29215 None:intergenic 50.0%
CCAGGAGAAGAAAGAAGCCA+TGG - tig0000674:29193-29212 Msa1335730:exon 50.0%
GTCATTGTTGCTACGCTAGG+AGG + tig0000674:29417-29436 None:intergenic 50.0%
GGAGTCATTGTTGCTACGCT+AGG + tig0000674:29420-29439 None:intergenic 50.0%
TGGCAGTTCACAACAGGAAG+TGG - tig0000674:29585-29604 Msa1335730:intron 50.0%
GGCAGTTCACAACAGGAAGT+GGG - tig0000674:29586-29605 Msa1335730:intron 50.0%
AGCAGCGTTGCCTAGAGCTT+TGG - tig0000674:25576-25595 Msa1335730:intron 55.0%
! TGTTTGCTTGGTGGTTGGGG+TGG - tig0000674:26320-26339 Msa1335730:intron 55.0%
! GTTTGCTTGGTGGTTGGGGT+GGG - tig0000674:26321-26340 Msa1335730:intron 55.0%
! TTTGCTTGGTGGTTGGGGTG+GGG - tig0000674:26322-26341 Msa1335730:intron 55.0%
GGGGGAGTGATAAGGAGAGA+GGG - tig0000674:26342-26361 Msa1335730:intron 55.0%
TGTGGTTGCAGTGGCGTTGT+GGG + tig0000674:26528-26547 None:intergenic 55.0%
ATGTGGTTGCAGTGGCGTTG+TGG + tig0000674:26529-26548 None:intergenic 55.0%
! GCCGTTGATTGGGAGATACC+AGG - tig0000674:26745-26764 Msa1335730:CDS 55.0%
TATCACTTCTAGCGGCGGTG+AGG - tig0000674:27293-27312 Msa1335730:intron 55.0%
! AAATACAGGGGGAGGTGCAG+AGG - tig0000674:27326-27345 Msa1335730:intron 55.0%
CCCGTGTGAATCCCACACTT+TGG + tig0000674:27803-27822 None:intergenic 55.0%
!! GGTCCTTTGAGATGTTGGCC+CGG - tig0000674:27964-27983 Msa1335730:intron 55.0%
CGTGAAAGACACAAGCCACC+GGG + tig0000674:27985-28004 None:intergenic 55.0%
CCGTGAAAGACACAAGCCAC+CGG + tig0000674:27986-28005 None:intergenic 55.0%
! CCGGTGGCTTGTGTCTTTCA+CGG - tig0000674:27983-28002 Msa1335730:intron 55.0%
GAGAGCAAACGGGGTGCAAA+TGG + tig0000674:28131-28150 None:intergenic 55.0%
TTGCACCCCGTTTGCTCTCA+AGG - tig0000674:28132-28151 Msa1335730:intron 55.0%
ATTCAGCTGTCTACCGCTGG+AGG - tig0000674:28419-28438 Msa1335730:intron 55.0%
CGGCTCGTTATCTGCAGTGA+TGG - tig0000674:28443-28462 Msa1335730:intron 55.0%
CAATCAAGGGCCACTTCTGC+AGG + tig0000674:28485-28504 None:intergenic 55.0%
GTGGCCCTTGATTGTTGTCG+TGG - tig0000674:28491-28510 Msa1335730:intron 55.0%
TTGTCGTGGCATGTCAGCAG+AGG - tig0000674:28505-28524 Msa1335730:intron 55.0%
TGATGTGGTACAGGAGCAGG+TGG + tig0000674:28787-28806 None:intergenic 55.0%
CATGGAGCCAGATGTGGTAG+TGG - tig0000674:28888-28907 Msa1335730:intron 55.0%
GCAAAGGAAAGGTCCATCCC+AGG + tig0000674:29165-29184 None:intergenic 55.0%
!! GCTGGGATCCGCGTCGTTTT+TGG - tig0000674:24023-24042 Msa1335730:three_prime_UTR 60.0%
! TTGCTTGGTGGTTGGGGTGG+GGG - tig0000674:26323-26342 Msa1335730:intron 60.0%
TTGGGGTGGGGGGAGTGATA+AGG - tig0000674:26334-26353 Msa1335730:intron 60.0%
GGGGGGAGTGATAAGGAGAG+AGG - tig0000674:26341-26360 Msa1335730:intron 60.0%
ACTTCTAGCGGCGGTGAGGT+TGG - tig0000674:27297-27316 Msa1335730:intron 60.0%
CCACCGGGCCAACATCTCAA+AGG + tig0000674:27970-27989 None:intergenic 60.0%
!! CCTTTGAGATGTTGGCCCGG+TGG - tig0000674:27967-27986 Msa1335730:intron 60.0%
! ACCCTCAAAAAGTGCGCCCC+TGG - tig0000674:29144-29163 Msa1335730:CDS 60.0%
!! CCCAGGGGCGCACTTTTTGA+GGG + tig0000674:29148-29167 None:intergenic 60.0%
! CCCTCAAAAAGTGCGCCCCT+GGG - tig0000674:29145-29164 Msa1335730:CDS 60.0%
!! TCCCAGGGGCGCACTTTTTG+AGG + tig0000674:29149-29168 None:intergenic 60.0%
! CAAAAAGTGCGCCCCTGGGA+TGG - tig0000674:29149-29168 Msa1335730:CDS 60.0%
! TGCTTGGTGGTTGGGGTGGG+GGG - tig0000674:26324-26343 Msa1335730:intron 65.0%
AGCTGTCTACCGCTGGAGGC+CGG - tig0000674:28423-28442 Msa1335730:intron 65.0%
GATAACGAGCCGGCCTCCAG+CGG + tig0000674:28435-28454 None:intergenic 65.0%
GGAGCAGGTGGCTTCTCCTG+AGG + tig0000674:28775-28794 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0000674 gene 23962 29927 23962 ID=Msa1335730;Name=Msa1335730
tig0000674 mRNA 23962 29927 23962 ID=Msa1335730-mRNA-1;Parent=Msa1335730;Name=Msa1335730-mRNA-1;_AED=0.06;_eAED=0.06;_QI=357|1|1|1|0.88|0.8|10|576|429
tig0000674 exon 23962 24566 23962 ID=Msa1335730-mRNA-1:exon:381;Parent=Msa1335730-mRNA-1
tig0000674 exon 24656 24855 24656 ID=Msa1335730-mRNA-1:exon:380;Parent=Msa1335730-mRNA-1
tig0000674 exon 24942 25177 24942 ID=Msa1335730-mRNA-1:exon:379;Parent=Msa1335730-mRNA-1
tig0000674 exon 25339 25464 25339 ID=Msa1335730-mRNA-1:exon:378;Parent=Msa1335730-mRNA-1
tig0000674 exon 25821 25928 25821 ID=Msa1335730-mRNA-1:exon:377;Parent=Msa1335730-mRNA-1
tig0000674 exon 26542 26605 26542 ID=Msa1335730-mRNA-1:exon:376;Parent=Msa1335730-mRNA-1
tig0000674 exon 26698 26851 26698 ID=Msa1335730-mRNA-1:exon:375;Parent=Msa1335730-mRNA-1
tig0000674 exon 28249 28420 28249 ID=Msa1335730-mRNA-1:exon:374;Parent=Msa1335730-mRNA-1
tig0000674 exon 29003 29387 29003 ID=Msa1335730-mRNA-1:exon:373;Parent=Msa1335730-mRNA-1
tig0000674 exon 29755 29927 29755 ID=Msa1335730-mRNA-1:exon:372;Parent=Msa1335730-mRNA-1
tig0000674 five_prime_UTR 29755 29927 29755 ID=Msa1335730-mRNA-1:five_prime_utr;Parent=Msa1335730-mRNA-1
tig0000674 five_prime_UTR 29204 29387 29204 ID=Msa1335730-mRNA-1:five_prime_utr;Parent=Msa1335730-mRNA-1
tig0000674 CDS 29003 29203 29003 ID=Msa1335730-mRNA-1:cds;Parent=Msa1335730-mRNA-1
tig0000674 CDS 28249 28420 28249 ID=Msa1335730-mRNA-1:cds;Parent=Msa1335730-mRNA-1
tig0000674 CDS 26698 26851 26698 ID=Msa1335730-mRNA-1:cds;Parent=Msa1335730-mRNA-1
tig0000674 CDS 26542 26605 26542 ID=Msa1335730-mRNA-1:cds;Parent=Msa1335730-mRNA-1
tig0000674 CDS 25821 25928 25821 ID=Msa1335730-mRNA-1:cds;Parent=Msa1335730-mRNA-1
tig0000674 CDS 25339 25464 25339 ID=Msa1335730-mRNA-1:cds;Parent=Msa1335730-mRNA-1
tig0000674 CDS 24942 25177 24942 ID=Msa1335730-mRNA-1:cds;Parent=Msa1335730-mRNA-1
tig0000674 CDS 24656 24855 24656 ID=Msa1335730-mRNA-1:cds;Parent=Msa1335730-mRNA-1
tig0000674 CDS 24538 24566 24538 ID=Msa1335730-mRNA-1:cds;Parent=Msa1335730-mRNA-1
tig0000674 three_prime_UTR 23962 24537 23962 ID=Msa1335730-mRNA-1:three_prime_utr;Parent=Msa1335730-mRNA-1
Gene Sequence

>Msa1335730

ATGTCTGTGAGGAGTGAACACCATCAAACGGTTCCTCTTTCGGTTCTATTGAAGCGGGAGTTGATGAGCGAGAAAATTGAGAAACCTGAGATTGTTCATGGTCAAGCTGGACAAAGTAAGAAAGGAGAGGATTTCGCCTTGTTAAAGTCTGATTGTCAGAGGATGGTTGGTGATGGGGTCTATACATATTCTGTTTATGGGCTATTTGATGGACACAATGGATCTGCTGCTGCTATTTATTCTAAGGAGAACCTTCTAAATAATGTCGTAAGTGCAATTCCTCCAGATCTTAACAGAGATGAGTGGTTAGCAGCGTTGCCTAGAGCTTTGGTTGCTGGATTTGTAAAAACTGATAAAGATTTTGCAGAGAAAGGACAAAAATCAGGAACAACTGTCACCTTTGTGATTATAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGCGATTCCCGCTGCGTACTAGAATCTTCTGAAGGAGGGATTTATTACTTGTCAGCAGATCATAGGCTAGAAACAAATGAAGAAGAGAGGGTTCGTATCACTTCTAGCGGCGGTGAGGTTGGTCGTTTAAATACAGGGGGAGGTGCAGAGGTTGGTCCTTTGAGATGTTGGCCCGGTGGCTTGTGTCTTTCACGGTCTATTGGAGATATGGATATTGGTGAATTTGTTGTCCCTGTACCATATGTAAAACAAGTGAAGCTGTCTACCGCTGGAGGCCGGCTCGTTATCTGCAGTGATGGTGTTTGGGATGCTTTACCTGCAGAAGTGGCCCTTGATTGTTGTCGTGGCATGTCAGCAGAGGCTGCTGCACCACAGATTGTAAAAGAAGCTTTACAAGCAAAGGGACTTAGAGATGATACAACCTGTATTGTTGTCGATATATTACCTCAGGAGAAGCCACCTGCTCCTGTACCACATCAAAAGAAGCCAGTAAAAGGAATGCTCAAGGCCATGTTTCGTAAAAAGTCTTCGGAATCATCATCTTATATTGACAAAGAATACATGGAGCCAGATGTGGTAGTGGAGCTGTATGAGGAAGGCTCTGCTATGCTTTCAGAGAGGTTAGAAACAAAATATCCACTATGCAACATGTTCAAGTTGTTCATATGTGCAGTATGTCAAGTAGAAATAAAACCCGGAGAGGGTATTTCAGTACATGAGGGTGCAGAAAACCCTCAAAAAGTGCGCCCCTGGGATGGACCTTTCCTTTGCTTTAGTTGCCAGGAGAAGAAAGAAGCCATGGAAGGGAAAAGATCATTAGATAGACTTAGCAGCGGAAGTGACGAATGA
Protein sequence

>Msa1335730

MSVRSEHHQTVPLSVLLKRELMSEKIEKPEIVHGQAGQSKKGEDFALLKSDCQRMVGDGVYTYSVYGLFDGHNGSAAAIYSKENLLNNVVSAIPPDLNRDEWLAALPRALVAGFVKTDKDFAEKGQKSGTTVTFVIIEGWVVTVASVGDSRCVLESSEGGIYYLSADHRLETNEEERVRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDIGEFVVPVPYVKQVKLSTAGGRLVICSDGVWDALPAEVALDCCRGMSAEAAAPQIVKEALQAKGLRDDTTCIVVDILPQEKPPAPVPHQKKPVKGMLKAMFRKKSSESSSYIDKEYMEPDVVVELYEEGSAMLSERLETKYPLCNMFKLFICAVCQVEIKPGEGISVHEGAENPQKVRPWDGPFLCFSCQEKKEAMEGKRSLDRLSSGSDE*