AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1043880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1043880 MtrunA17_Chr1g0153671 99.068 429 3 1 1 429 1 428 0.0 869
Msa1043880 MtrunA17_Chr3g0133801 83.721 430 67 2 1 428 1 429 0.0 743
Msa1043880 MtrunA17_Chr1g0209451 60.287 418 161 3 4 418 7 422 0.0 531
Msa1043880 MtrunA17_Chr7g0271971 58.824 408 167 1 11 418 14 420 5.52e-173 491
Msa1043880 MtrunA17_Chr1g0192471 56.585 410 177 1 11 419 14 423 2.02e-164 469
Msa1043880 MtrunA17_Chr7g0225501 50.591 423 183 12 11 420 32 441 6.84e-124 366
Msa1043880 MtrunA17_Chr2g0326251 46.535 202 94 7 106 303 7 198 6.96e-49 166
Msa1043880 MtrunA17_Chr1g0150451 32.917 240 137 9 65 299 108 328 7.98e-26 107
Msa1043880 MtrunA17_Chr3g0136711 30.962 239 141 8 65 298 65 284 6.66e-24 100
Msa1043880 MtrunA17_Chr1g0212961 34.615 234 131 10 66 297 127 340 1.67e-23 100
Msa1043880 MtrunA17_Chr2g0317021 30.638 235 139 9 65 294 117 332 2.09e-22 97.4
Msa1043880 MtrunA17_Chr3g0105351 27.426 237 151 8 64 294 93 314 1.84e-21 94.4
Msa1043880 MtrunA17_Chr3g0126511 31.837 245 144 7 65 305 125 350 1.61e-20 92.4
Msa1043880 MtrunA17_Chr3g0105371 27.615 239 148 9 64 294 117 338 1.62e-20 92.0
Msa1043880 MtrunA17_Chr8g0360351 32.766 235 130 12 65 292 66 279 1.90e-20 90.9
Msa1043880 MtrunA17_Chr4g0065141 30.534 262 135 10 64 304 123 358 2.34e-19 89.4
Msa1043880 MtrunA17_Chr5g0430481 28.279 244 150 10 59 294 148 374 3.05e-19 89.0
Msa1043880 MtrunA17_Chr4g0070871 28.244 262 143 8 66 294 254 503 6.24e-19 89.0
Msa1043880 MtrunA17_Chr2g0279151 29.185 233 141 9 65 292 65 278 7.59e-19 86.3
Msa1043880 MtrunA17_Chr1g0150781 30.292 274 135 11 66 299 291 548 9.72e-18 85.5
Msa1043880 MtrunA17_Chr5g0407161 26.119 268 158 9 61 311 120 364 1.82e-17 83.6
Msa1043880 MtrunA17_Chr1g0171571 29.268 246 141 7 66 296 419 646 2.63e-17 84.3
Msa1043880 MtrunA17_Chr1g0194191 29.588 267 149 12 64 308 117 366 2.80e-17 83.2
Msa1043880 MtrunA17_Chr3g0115851 27.778 234 143 8 65 292 66 279 3.25e-17 81.6
Msa1043880 MtrunA17_Chr4g0050381 28.205 234 142 9 65 292 61 274 3.35e-17 81.6
Msa1043880 MtrunA17_Chr4g0051661 30.126 239 138 10 61 292 179 395 5.54e-17 82.4
Msa1043880 MtrunA17_Chr5g0426141 28.326 233 143 8 65 292 66 279 1.14e-16 80.1
Msa1043880 MtrunA17_Chr1g0158781 29.555 247 143 8 66 294 146 379 1.77e-16 80.9
Msa1043880 MtrunA17_Chr3g0135961 28.058 278 144 9 62 299 283 544 8.48e-16 79.3
Msa1043880 MtrunA17_Chr6g0483411 27.843 255 138 10 66 292 80 316 1.31e-15 77.4
Msa1043880 MtrunA17_Chr2g0295401 30.325 277 143 16 67 301 94 362 5.75e-14 72.8
Msa1043880 MtrunA17_Chr2g0299981 27.368 285 144 9 66 299 268 540 1.30e-13 72.8
Msa1043880 MtrunA17_Chr8g0389921 25.483 259 160 9 66 302 199 446 1.42e-13 72.4
Msa1043880 MtrunA17_Chr1g0150071 28.125 256 113 11 62 262 49 288 6.62e-13 69.7
Msa1043880 MtrunA17_Chr4g0067711 32.124 193 105 11 127 299 173 359 8.58e-13 69.3
Msa1043880 MtrunA17_Chr3g0136811 34.437 151 70 6 120 259 153 285 1.40e-12 68.6
Msa1043880 MtrunA17_Chr2g0293811 27.509 269 159 11 64 313 99 350 5.57e-12 67.0
Msa1043880 MtrunA17_Chr2g0286951 28.674 279 152 13 52 294 74 341 3.62e-11 64.7
Msa1043880 MtrunA17_Chr7g0272061 32.727 165 94 7 128 280 182 341 5.76e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1043880 AT1G47380.1 76.690 429 98 2 1 428 1 428 0.0 697
Msa1043880 AT1G68410.4 57.245 421 174 2 4 418 9 429 8.82e-180 509
Msa1043880 AT1G68410.3 57.245 421 174 2 4 418 9 429 8.82e-180 509
Msa1043880 AT1G68410.1 57.245 421 174 2 4 418 9 429 8.82e-180 509
Msa1043880 AT1G68410.2 57.245 421 174 2 4 418 9 429 8.82e-180 509
Msa1043880 AT1G09160.2 57.971 414 169 3 7 418 10 420 3.53e-169 481
Msa1043880 AT1G09160.1 57.971 414 169 3 7 418 10 420 3.53e-169 481
Msa1043880 AT5G53140.1 31.923 260 150 8 37 292 109 345 1.81e-25 107
Msa1043880 AT5G53140.2 31.923 260 150 8 37 292 109 345 1.81e-25 107
Msa1043880 AT1G43900.1 35.043 234 127 10 64 292 153 366 1.11e-24 105
Msa1043880 AT2G34740.1 28.782 271 162 11 30 295 91 335 1.37e-23 101
Msa1043880 AT4G31750.2 30.544 239 142 9 65 298 64 283 1.14e-22 98.2
Msa1043880 AT4G31750.1 30.544 239 142 9 65 298 64 283 1.57e-22 97.8
Msa1043880 AT4G31750.3 30.544 239 142 9 65 298 64 283 1.57e-22 97.8
Msa1043880 AT2G40180.1 29.218 243 155 6 58 294 154 385 4.27e-22 97.8
Msa1043880 AT1G78200.5 30.342 234 140 8 65 292 19 235 5.93e-22 94.7
Msa1043880 AT1G78200.4 30.342 234 140 8 65 292 19 235 5.93e-22 94.7
Msa1043880 AT5G10740.1 30.508 236 140 8 65 295 64 280 8.62e-22 96.3
Msa1043880 AT5G10740.2 30.508 236 140 8 65 295 64 280 8.62e-22 96.3
Msa1043880 AT1G07160.1 31.683 202 119 6 64 262 152 337 1.08e-21 96.7
Msa1043880 AT1G22280.3 28.755 233 148 7 65 292 65 284 1.19e-21 94.7
Msa1043880 AT5G24940.1 30.085 236 141 8 65 295 64 280 1.30e-21 97.1
Msa1043880 AT1G78200.1 30.342 234 140 8 65 292 64 280 2.22e-21 94.0
Msa1043880 AT1G78200.3 30.342 234 140 8 65 292 64 280 2.22e-21 94.0
Msa1043880 AT1G78200.2 30.342 234 140 8 65 292 64 280 2.22e-21 94.0
Msa1043880 AT1G22280.1 29.185 233 141 7 65 292 65 278 1.04e-20 92.0
Msa1043880 AT1G67820.1 32.273 220 135 5 64 283 150 355 1.62e-20 94.0
Msa1043880 AT1G67820.2 32.273 220 135 5 64 283 114 319 1.74e-20 93.2
Msa1043880 AT5G57050.2 30.798 263 136 9 66 294 121 371 1.96e-20 92.8
Msa1043880 AT4G26080.1 29.588 267 143 8 66 299 173 427 2.64e-20 93.2
Msa1043880 AT5G57050.1 30.798 263 136 9 66 294 161 411 3.09e-20 92.8
Msa1043880 AT2G20630.1 28.731 268 160 12 30 292 35 276 4.06e-20 90.5
Msa1043880 AT4G28400.3 28.235 255 154 10 43 292 28 258 7.36e-20 89.4
Msa1043880 AT2G25620.1 30.451 266 136 10 64 305 127 367 1.27e-19 90.5
Msa1043880 AT2G25620.2 30.451 266 136 10 64 305 127 367 1.27e-19 90.5
Msa1043880 AT4G28400.1 28.235 255 154 10 43 292 50 280 1.30e-19 89.0
Msa1043880 AT2G20630.2 28.467 274 165 12 30 298 35 282 1.49e-19 89.0
Msa1043880 AT3G51470.2 28.782 271 151 11 59 311 56 302 1.57e-19 89.4
Msa1043880 AT1G34750.2 29.185 233 141 7 65 292 66 279 2.16e-19 88.2
Msa1043880 AT1G34750.1 29.185 233 141 7 65 292 66 279 2.16e-19 88.2
Msa1043880 AT1G34750.3 29.185 233 141 7 65 292 66 279 2.16e-19 88.2
Msa1043880 AT3G51470.1 28.782 271 151 11 59 311 100 346 3.05e-19 89.0
Msa1043880 AT2G30020.1 30.000 240 143 11 64 294 169 392 1.90e-18 87.0
Msa1043880 AT2G40860.4 31.174 247 136 7 65 296 325 552 2.60e-17 84.7
Msa1043880 AT2G40860.1 31.174 247 136 7 65 296 423 650 2.64e-17 84.7
Msa1043880 AT2G33700.1 29.730 259 136 11 64 304 122 352 6.03e-17 82.4
Msa1043880 AT1G48040.1 30.072 276 155 10 59 312 106 365 2.62e-16 80.5
Msa1043880 AT3G62260.3 29.044 272 145 12 64 309 26 275 6.96e-16 78.2
Msa1043880 AT4G27800.1 25.338 296 170 8 58 312 81 366 2.33e-15 77.8
Msa1043880 AT2G40860.2 30.435 230 118 6 65 270 423 634 2.92e-15 78.6
Msa1043880 AT3G62260.1 29.044 272 145 12 64 309 115 364 3.09e-15 77.4
Msa1043880 AT3G62260.2 29.044 272 145 12 64 309 116 365 3.14e-15 77.4
Msa1043880 AT5G27930.1 34.356 163 93 6 128 280 176 334 7.08e-14 73.2
Msa1043880 AT5G27930.2 34.356 163 93 6 128 280 176 334 7.08e-14 73.2
Msa1043880 AT4G27800.2 25.856 263 148 7 58 283 81 333 1.30e-13 72.0
Msa1043880 AT3G11410.1 29.060 234 121 9 62 266 134 351 2.45e-13 71.6
Msa1043880 AT3G15260.2 27.039 233 146 7 65 292 73 286 3.33e-13 70.1
Msa1043880 AT3G15260.1 27.039 233 146 7 65 292 73 286 3.33e-13 70.1
Msa1043880 AT4G27800.3 26.446 242 131 7 58 262 81 312 4.00e-13 70.5
Msa1043880 AT1G17550.1 25.952 289 147 10 62 299 234 506 1.40e-12 69.7
Msa1043880 AT1G17550.2 25.952 289 147 10 62 299 234 506 1.40e-12 69.7
Msa1043880 AT4G28400.2 26.754 228 136 9 30 249 33 237 1.19e-11 65.1
Msa1043880 AT4G32950.1 28.276 290 174 12 36 305 49 324 1.32e-11 65.9
Msa1043880 AT1G18030.2 29.952 207 106 8 66 250 110 299 3.41e-11 64.3
Msa1043880 AT5G26010.1 29.545 220 127 11 57 255 65 277 5.90e-11 63.9
Msa1043880 AT2G40860.3 31.088 193 102 5 65 244 423 597 7.53e-11 64.7

Find 151 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATCATCACAGGGGCTTTA+TGG 0.101138 7_2:-2028989 Msa1043880:three_prime_UTR
GTCTATACATATTCTGTTTA+TGG 0.146524 7_2:-2033568 Msa1043880:CDS
GGGGCTTTATGGATCTAATT+TGG 0.188892 7_2:-2028978 Msa1043880:three_prime_UTR
TGGGATCAGTTCATTGTATA+TGG 0.214836 7_2:-2028788 Msa1043880:three_prime_UTR
CCATGGCTTCTTTCTTCTCC+TGG 0.273356 7_2:+2029239 None:intergenic
TCTGTCGCTTGAGGTTATTC+TGG 0.277576 7_2:-2033882 Msa1043880:five_prime_UTR
GAATTTGAACTCTGTGGCTT+TGG 0.282965 7_2:-2033917 Msa1043880:five_prime_UTR
TGCTGCTGCTATTTATTCTA+AGG 0.285233 7_2:-2032939 Msa1043880:CDS
TTCATTGTATATGGGTCATT+TGG 0.286662 7_2:-2028779 Msa1043880:three_prime_UTR
CCACAATTGTAATGTGATAT+AGG 0.288037 7_2:-2028719 Msa1043880:three_prime_UTR
TTGCCTAGAGCTTTGGTTGC+TGG 0.297177 7_2:-2032848 Msa1043880:CDS
CCATCAAACGGTTCCTCTTT+CGG 0.298563 7_2:-2033725 Msa1043880:CDS
CATCAAAAGAAGCCAGTAAA+AGG 0.301310 7_2:-2029630 Msa1043880:CDS
TCCTTTGGCCATATGAAGAT+TGG 0.324850 7_2:-2028597 Msa1043880:three_prime_UTR
TCTATACATATTCTGTTTAT+GGG 0.326441 7_2:-2033567 Msa1043880:CDS
GTCACCTTTGTGATTATAGA+AGG 0.340000 7_2:-2031374 Msa1043880:CDS
CACAATTGTAATGTGATATA+GGG 0.347759 7_2:-2028718 Msa1043880:three_prime_UTR
TTGTGTCTTTCACGGTCTAT+TGG 0.351135 7_2:-2030441 Msa1043880:CDS
TCTATTGGAGATATGGATAT+TGG 0.357187 7_2:-2030426 Msa1043880:CDS
TTCACGGTCTATTGGAGATA+TGG 0.367775 7_2:-2030433 Msa1043880:CDS
ACTCAACCTTTCACAAAACT+TGG 0.368682 7_2:+2028875 None:intergenic
GAGAAACCTGAGATTGTTCA+TGG 0.372409 7_2:-2033667 Msa1043880:CDS
ATTACTTGTCAGCAGATCAT+AGG 0.376944 7_2:-2031283 Msa1043880:CDS
TTATCTGCAGTGATGGTGTT+TGG 0.384391 7_2:-2029982 Msa1043880:CDS
ATCAAAATTGTTCATTCGAC+TGG 0.384763 7_2:-2029050 Msa1043880:three_prime_UTR
GAAATGAGAAGATGATGAAT+TGG 0.385984 7_2:+2034369 None:intergenic
AAAGCCCCTGTGATGATAGA+AGG 0.390050 7_2:+2028993 None:intergenic
AGCAGCGTTGCCTAGAGCTT+TGG 0.392801 7_2:-2032855 Msa1043880:CDS
CCGGTGGCTTGTGTCTTTCA+CGG 0.416465 7_2:-2030449 Msa1043880:CDS
GTCAGAGGATGGTTGGTGAT+GGG 0.426132 7_2:-2033591 Msa1043880:CDS
TTTCCTTTGCTTTAGTTGCC+AGG 0.429172 7_2:-2029257 Msa1043880:CDS
CCTTTGGCCATATGAAGATT+GGG 0.429793 7_2:-2028596 Msa1043880:three_prime_UTR
ATGGAAGGGAAAAGATCATT+AGG 0.430336 7_2:-2029220 Msa1043880:intron
CACTCATCTCTGTTAAGATC+TGG 0.439890 7_2:+2032881 None:intergenic
TGTCAGAGGATGGTTGGTGA+TGG 0.440068 7_2:-2033592 Msa1043880:CDS
CGCTGGTTGAGTCTAGTTGT+TGG 0.441951 7_2:-2033807 Msa1043880:five_prime_UTR
GAGGTTGGTCGTTTAAATAC+AGG 0.444696 7_2:-2031120 Msa1043880:CDS
TATAAGTGGCAGTTCACAAC+AGG 0.445666 7_2:-2028852 Msa1043880:three_prime_UTR
TATCTGCAGTGATGGTGTTT+GGG 0.448206 7_2:-2029981 Msa1043880:CDS
GTTATTGTTATTGTTGTTGA+AGG 0.449173 7_2:+2034452 None:intergenic
ACGGTGTCGTTTAGATGATC+AGG 0.453644 7_2:+2034334 None:intergenic
TACAGCTCCACTACCACATC+TGG 0.464766 7_2:+2029537 None:intergenic
AGGTTGGTCCTTTGAGATGT+TGG 0.465990 7_2:-2030473 Msa1043880:CDS
GCTTGACCATGAACAATCTC+AGG 0.467857 7_2:+2033661 None:intergenic
CTCTTTCGGTTCTATTGAAG+CGG 0.469837 7_2:-2033711 Msa1043880:CDS
CCTTTGTGATTATAGAAGGA+TGG 0.472037 7_2:-2031370 Msa1043880:CDS
ATGTACTGAAATACCCTCTC+CGG 0.472811 7_2:+2029324 None:intergenic
GGGATCAGTTCATTGTATAT+GGG 0.479984 7_2:-2028787 Msa1043880:three_prime_UTR
CAATCAAGGGCCACTTCTGC+AGG 0.480526 7_2:+2029950 None:intergenic
TGGCAGTTCACAACAGGAAG+TGG 0.483910 7_2:-2028846 Msa1043880:three_prime_UTR
CGCTTCAATAGAACCGAAAG+AGG 0.484359 7_2:+2033712 None:intergenic
TGTTGTCGATATATTACCTC+AGG 0.492152 7_2:-2029676 Msa1043880:CDS
CCGAAAGAGGAACCGTTTGA+TGG 0.492567 7_2:+2033725 None:intergenic
TAATATATCGACAACAATAC+AGG 0.495282 7_2:+2029683 None:intergenic
TACAAGACCCAATCTTCATA+TGG 0.497077 7_2:+2028589 None:intergenic
CAGGAAGCTTTACAAGCAAA+GGG 0.497674 7_2:-2029723 Msa1043880:CDS
ATTCTAACATGGAAGTGTAA+TGG 0.498210 7_2:-2028905 Msa1043880:three_prime_UTR
AAAGAAGCGCGCATTGTCGC+TGG 0.503997 7_2:-2033824 Msa1043880:five_prime_UTR
CTTTGTGATTATAGAAGGAT+GGG 0.507466 7_2:-2031369 Msa1043880:CDS
GGATGCTTTACCTGCAGAAG+TGG 0.508685 7_2:-2029960 Msa1043880:CDS
AAAGAATAAATCATTCGAAA+AGG 0.510123 7_2:+2028640 None:intergenic
ACATGCCACGACAACAATCA+AGG 0.512860 7_2:+2029936 None:intergenic
GAAGAATATTTGCAAAACGC+TGG 0.512864 7_2:-2034422 Msa1043880:five_prime_UTR
ACTTCTAGCGGCGGTGAGGT+TGG 0.512986 7_2:-2031135 Msa1043880:CDS
TCAGGAAGCTTTACAAGCAA+AGG 0.513371 7_2:-2029724 Msa1043880:intron
GTGAAAGGTTGAGTTATAAG+TGG 0.514846 7_2:-2028866 Msa1043880:three_prime_UTR
GTTGTAACAGTTGCATCAGT+TGG 0.519119 7_2:-2031347 Msa1043880:CDS
TCAGAGGATGGTTGGTGATG+GGG 0.521504 7_2:-2033590 Msa1043880:CDS
CGGCTCGTTATCTGCAGTGA+TGG 0.525551 7_2:-2029989 Msa1043880:CDS
GCAAAGGAAAGGTCCATCCC+AGG 0.526286 7_2:+2029270 None:intergenic
GAGATTGTTCATGGTCAAGC+TGG 0.527083 7_2:-2033658 Msa1043880:CDS
TCAATTCAGCTGTCTACCGC+TGG 0.528577 7_2:-2030016 Msa1043880:intron
CAAGCTGGACAAAGTAAGAA+AGG 0.531054 7_2:-2033643 Msa1043880:CDS
CAGTATAATTGATCTATGAA+TGG 0.531068 7_2:+2028680 None:intergenic
AAGAATATTTGCAAAACGCT+GGG 0.533463 7_2:-2034421 Msa1043880:five_prime_UTR
AGCTGTCTACCGCTGGAGGC+CGG 0.534654 7_2:-2030009 Msa1043880:CDS
CTCAACCTTTCACAAAACTT+GGG 0.538386 7_2:+2028876 None:intergenic
TGACTCCCTTCTATCATCAC+AGG 0.538628 7_2:-2028999 Msa1043880:three_prime_UTR
CATGGAGCCAGATGTGGTAG+TGG 0.541537 7_2:-2029544 Msa1043880:CDS
AACTTGAACATGTTGCATAG+TGG 0.546946 7_2:+2029382 None:intergenic
CCTATATCACATTACAATTG+TGG 0.549510 7_2:+2028719 None:intergenic
TGATGTGGTACAGGAGCAGG+TGG 0.551757 7_2:+2029648 None:intergenic
GGAGTCATTGTTGCTACGCT+AGG 0.555697 7_2:+2029015 None:intergenic
CCAGGAGAAGAAAGAAGCCA+TGG 0.556410 7_2:-2029239 Msa1043880:CDS
AGAAGATTCTAGTACGCAGC+GGG 0.558740 7_2:+2031319 None:intergenic
TCTTTCGGTTCTATTGAAGC+GGG 0.561579 7_2:-2033710 Msa1043880:CDS
GATTTGAACTCTGTCGCTTG+AGG 0.565232 7_2:-2033891 Msa1043880:five_prime_UTR
AATCCAGCAACCAAAGCTCT+AGG 0.565798 7_2:+2032845 None:intergenic
CCCAATCTTCATATGGCCAA+AGG 0.569712 7_2:+2028596 None:intergenic
TGTACTGAAATACCCTCTCC+GGG 0.570714 7_2:+2029325 None:intergenic
TACTAGAATCTTCTGAAGGA+GGG 0.573395 7_2:-2031310 Msa1043880:CDS
TCATAGATCAATTATACTGT+AGG 0.573875 7_2:-2028676 Msa1043880:three_prime_UTR
AACCTTTCACAAAACTTGGG+TGG 0.574447 7_2:+2028879 None:intergenic
GGTCCTTTGAGATGTTGGCC+CGG 0.574568 7_2:-2030468 Msa1043880:CDS
CGTGAAAGACACAAGCCACC+GGG 0.575222 7_2:+2030450 None:intergenic
TTATATTGACAAAGAATACA+TGG 0.576737 7_2:-2029562 Msa1043880:CDS
CCGTGAAAGACACAAGCCAC+CGG 0.577523 7_2:+2030449 None:intergenic
CAAAGGAAAGGTCCATCCCA+GGG 0.579850 7_2:+2029271 None:intergenic
CTATACATATTCTGTTTATG+GGG 0.580689 7_2:-2033566 Msa1043880:intron
ACCATATGTAAAACAAGTGA+AGG 0.581674 7_2:-2030385 Msa1043880:intron
AACAACAATAACAATAACAA+TGG 0.583245 7_2:-2034447 Msa1043880:five_prime_UTR
TGTGGTAGTGGAGCTGTATG+AGG 0.585486 7_2:-2029532 Msa1043880:CDS
AGAAGAAAGAAGCCATGGAA+GGG 0.588485 7_2:-2029234 Msa1043880:CDS
AGAGGGTATTTCAGTACATG+AGG 0.592511 7_2:-2029320 Msa1043880:CDS
GAGAAGAAAGAAGCCATGGA+AGG 0.596474 7_2:-2029235 Msa1043880:CDS
AAGCCCCTGTGATGATAGAA+GGG 0.597788 7_2:+2028994 None:intergenic
GAGGAGTGAACACCATCAAA+CGG 0.597871 7_2:-2033737 Msa1043880:CDS
GACTCCCTTCTATCATCACA+GGG 0.599726 7_2:-2028998 Msa1043880:three_prime_UTR
GCCAGTAAAAGGAATGCTCA+AGG 0.606078 7_2:-2029619 Msa1043880:CDS
TGTTAAAGTCTGATTGTCAG+AGG 0.608454 7_2:-2033606 Msa1043880:CDS
GTGGCCCTTGATTGTTGTCG+TGG 0.610123 7_2:-2029941 Msa1043880:CDS
TCATCTCTGTTAAGATCTGG+AGG 0.610319 7_2:+2032884 None:intergenic
ATTCAGCTGTCTACCGCTGG+AGG 0.611201 7_2:-2030013 Msa1043880:intron
GGCAGTTCACAACAGGAAGT+GGG 0.612633 7_2:-2028845 Msa1043880:three_prime_UTR
CAGCTATTTGATGGACACAA+TGG 0.613548 7_2:-2032965 Msa1043880:CDS
GTCATTGTTGCTACGCTAGG+AGG 0.614806 7_2:+2029018 None:intergenic
CAGAAGATTCTAGTACGCAG+CGG 0.615294 7_2:+2031318 None:intergenic
TCTCCTGGCAACTAAAGCAA+AGG 0.615423 7_2:+2029254 None:intergenic
GTAGAAATAAAACCCGGAGA+GGG 0.616226 7_2:-2029337 Msa1043880:CDS
TATCACTTCTAGCGGCGGTG+AGG 0.618968 7_2:-2031139 Msa1043880:CDS
AAAGTCTGATTGTCAGAGGA+TGG 0.619234 7_2:-2033602 Msa1043880:CDS
TCTGATTGTCAGAGGATGGT+TGG 0.621776 7_2:-2033598 Msa1043880:CDS
AGGTTGGTCGTTTAAATACA+GGG 0.623903 7_2:-2031119 Msa1043880:CDS
GATAACGAGCCGGCCTCCAG+CGG 0.626646 7_2:+2030000 None:intergenic
GTACTAGAATCTTCTGAAGG+AGG 0.627636 7_2:-2031311 Msa1043880:CDS
TGGCAACTAAAGCAAAGGAA+AGG 0.629817 7_2:+2029259 None:intergenic
TGCGTACTAGAATCTTCTGA+AGG 0.633378 7_2:-2031314 Msa1043880:CDS
CATGCCACGACAACAATCAA+GGG 0.635389 7_2:+2029937 None:intergenic
CCACCGGGCCAACATCTCAA+AGG 0.638238 7_2:+2030465 None:intergenic
TGTCAAGTAGAAATAAAACC+CGG 0.639616 7_2:-2029343 Msa1043880:CDS
AGAATACATGGAGCCAGATG+TGG 0.640882 7_2:-2029550 Msa1043880:CDS
TGGACAAAGTAAGAAAGGAG+AGG 0.644392 7_2:-2033638 Msa1043880:CDS
CCTTTGAGATGTTGGCCCGG+TGG 0.645181 7_2:-2030465 Msa1043880:CDS
GGAGCAGGTGGCTTCTCCTG+AGG 0.645509 7_2:+2029660 None:intergenic
CATCACTGCAGATAACGAGC+CGG 0.646831 7_2:+2029990 None:intergenic
AGTAGAAATAAAACCCGGAG+AGG 0.647411 7_2:-2029338 Msa1043880:CDS
CAGGTGGAATTTGAACTCTG+TGG 0.651530 7_2:-2033923 Msa1043880:five_prime_UTR
CCATCCTTCTATAATCACAA+AGG 0.652760 7_2:+2031370 None:intergenic
TTGTCGTGGCATGTCAGCAG+AGG 0.661195 7_2:-2029927 Msa1043880:CDS
AGGGTTCGTATCACTTCTAG+CGG 0.670269 7_2:-2031147 Msa1043880:CDS
GTAGTGGAGCTGTATGAGGA+AGG 0.670367 7_2:-2029528 Msa1043880:CDS
GAGGGTATTTCAGTACATGA+GGG 0.676102 7_2:-2029319 Msa1043880:CDS
GTTGGTCGTTTAAATACAGG+GGG 0.676730 7_2:-2031117 Msa1043880:CDS
GTTCGTATCACTTCTAGCGG+CGG 0.677465 7_2:-2031144 Msa1043880:CDS
GGTTGGTCGTTTAAATACAG+GGG 0.683229 7_2:-2031118 Msa1043880:CDS
CAGATCTTAACAGAGATGAG+TGG 0.687097 7_2:-2032880 Msa1043880:CDS
AAAGGAAAGGTCCATCCCAG+GGG 0.692540 7_2:+2029272 None:intergenic
GGGAAAGAACAATGTCTGTG+AGG 0.706298 7_2:-2033756 Msa1043880:exon
ATTTCAGATAGACTTAGCAG+CGG 0.708774 7_2:-2029116 Msa1043880:intron
GCTCTGCTATGCTTTCAGAG+AGG 0.715140 7_2:-2029506 Msa1043880:intron
ACTCCCTTCTATCATCACAG+GGG 0.792716 7_2:-2028997 Msa1043880:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATCATTATTATTAATAA+CGG - chr7_2:2029008-2029027 Msa1043880:three_prime_UTR 10.0%
!! TAATATAGATGTTAAATAAT+AGG - chr7_2:2030347-2030366 Msa1043880:intron 10.0%
!! AATATAGATGTTAAATAATA+GGG - chr7_2:2030348-2030367 Msa1043880:intron 10.0%
!!! TTTTTTATTTTTAATGAGTA+TGG - chr7_2:2030511-2030530 Msa1043880:intron 10.0%
!!! ATTATTACCATTCTATTTTA+TGG - chr7_2:2029670-2029689 Msa1043880:CDS 15.0%
!!! AAAAATATTCACAAATGTTT+TGG + chr7_2:2030296-2030315 None:intergenic 15.0%
!! ATATAGATGTTAAATAATAG+GGG - chr7_2:2030349-2030368 Msa1043880:intron 15.0%
!! TATATATAACCATATTTGTT+AGG - chr7_2:2030589-2030608 Msa1043880:intron 15.0%
!!! TTGTGTTTTTAAATAGAATA+AGG - chr7_2:2031238-2031257 Msa1043880:intron 15.0%
!!! TGTAGATCATTTTTTATTTT+TGG - chr7_2:2031746-2031765 Msa1043880:intron 15.0%
!! ACTATACTGTTAATATTATA+TGG + chr7_2:2032144-2032163 None:intergenic 15.0%
!!! TTTTTACATATTTCTTTTTC+TGG - chr7_2:2034172-2034191 Msa1043880:intron 15.0%
!!! TTTTACATATTTCTTTTTCT+GGG - chr7_2:2034173-2034192 Msa1043880:intron 15.0%
!! AACAACAATAACAATAACAA+TGG - chr7_2:2028533-2028552 Msa1043880:three_prime_UTR 20.0%
!! CTATATTTCGATCTTTATTA+TGG - chr7_2:2028862-2028881 Msa1043880:three_prime_UTR 20.0%
!!! TGTTTTTGTTCATTTTTTCA+TGG + chr7_2:2028901-2028920 None:intergenic 20.0%
!!! AATTTGAGTATTTTTTAGGA+GGG - chr7_2:2029203-2029222 Msa1043880:intron 20.0%
!! TCTATACATATTCTGTTTAT+GGG - chr7_2:2029413-2029432 Msa1043880:intron 20.0%
!! ACAAAATCAGTAATTGAATA+TGG + chr7_2:2029452-2029471 None:intergenic 20.0%
!! TTAATTACATGATTACTGTT+TGG - chr7_2:2029627-2029646 Msa1043880:CDS 20.0%
!! AAACAAAACCATAACAATTA+GGG + chr7_2:2029866-2029885 None:intergenic 20.0%
!! TAAACAAAACCATAACAATT+AGG + chr7_2:2029867-2029886 None:intergenic 20.0%
!!! TTTTGGTAATATTACCATTA+AGG + chr7_2:2030279-2030298 None:intergenic 20.0%
!! AAATACAAAAGATTATACCA+AGG + chr7_2:2030415-2030434 None:intergenic 20.0%
!!! TATTTTTAATGAGTATGGTT+AGG - chr7_2:2030516-2030535 Msa1043880:intron 20.0%
!! TTGTAAATGATAATAGATGA+GGG - chr7_2:2030539-2030558 Msa1043880:intron 20.0%
!! TGTGATAGATCTTAATAATT+TGG + chr7_2:2031484-2031503 None:intergenic 20.0%
!! CAAAAATATACGAGTTAAAA+AGG + chr7_2:2031921-2031940 None:intergenic 20.0%
!! GTTAATATTACTGATATAAC+TGG - chr7_2:2032461-2032480 Msa1043880:intron 20.0%
!!! TCATTTTATGATTTGTTTTG+TGG - chr7_2:2033124-2033143 Msa1043880:intron 20.0%
!!! CATTTTATGATTTGTTTTGT+GGG - chr7_2:2033125-2033144 Msa1043880:intron 20.0%
!! TTATATTGACAAAGAATACA+TGG - chr7_2:2033418-2033437 Msa1043880:intron 20.0%
!!! TTTCATTATGTATTTTCATG+AGG + chr7_2:2034032-2034051 None:intergenic 20.0%
!! TTGTTAGAAAAATTCTAACA+TGG - chr7_2:2034064-2034083 Msa1043880:intron 20.0%
!!! ATATAGACTTTTAATGAAAG+TGG - chr7_2:2034234-2034253 Msa1043880:intron 20.0%
!! AAAGAATAAATCATTCGAAA+AGG + chr7_2:2034343-2034362 None:intergenic 20.0%
!! CATTACTGTTATTACAAAAA+AGG + chr7_2:2034439-2034458 None:intergenic 20.0%
!! GTTATTGTTATTGTTGTTGA+AGG + chr7_2:2028531-2028550 None:intergenic 25.0%
!!! TTTTGTTCATTTTTTCATGG+AGG + chr7_2:2028898-2028917 None:intergenic 25.0%
!!! TTTGTTTTGTTTCGTTAATC+AGG - chr7_2:2028977-2028996 Msa1043880:three_prime_UTR 25.0%
!!! CGAGAATTTGAGTATTTTTT+AGG - chr7_2:2029199-2029218 Msa1043880:intron 25.0%
!!! GAATTTGAGTATTTTTTAGG+AGG - chr7_2:2029202-2029221 Msa1043880:intron 25.0%
!!! ATTTGAGTATTTTTTAGGAG+GGG - chr7_2:2029204-2029223 Msa1043880:intron 25.0%
! GTCTATACATATTCTGTTTA+TGG - chr7_2:2029412-2029431 Msa1043880:intron 25.0%
! CTATACATATTCTGTTTATG+GGG - chr7_2:2029414-2029433 Msa1043880:intron 25.0%
!!! ATTACTGATTTTGTTATTGC+AGG - chr7_2:2029458-2029477 Msa1043880:intron 25.0%
! TTTGGAAAATTTATCTGAAC+TGG - chr7_2:2029645-2029664 Msa1043880:CDS 25.0%
!! TTTTACTTACAGCTATTTGA+TGG - chr7_2:2030006-2030025 Msa1043880:CDS 25.0%
!!! TTTTATTTTGATCTATCACC+CGG - chr7_2:2030312-2030331 Msa1043880:intron 25.0%
! TTAAATAATAGGGGAAGAAA+AGG - chr7_2:2030358-2030377 Msa1043880:intron 25.0%
! GTTGTAAATGATAATAGATG+AGG - chr7_2:2030538-2030557 Msa1043880:intron 25.0%
!! ATAACCATATTTGTTAGGAT+TGG - chr7_2:2030594-2030613 Msa1043880:intron 25.0%
!! TAACCATATTTGTTAGGATT+GGG - chr7_2:2030595-2030614 Msa1043880:intron 25.0%
! AAATCTTAAAAATTCCTGTC+AGG - chr7_2:2030780-2030799 Msa1043880:intron 25.0%
! AACAAATGTTAGTATTGTGT+GGG + chr7_2:2030928-2030947 None:intergenic 25.0%
! AAACAAATGTTAGTATTGTG+TGG + chr7_2:2030929-2030948 None:intergenic 25.0%
! CTAACATTTGTTTACTCATA+TGG - chr7_2:2030936-2030955 Msa1043880:intron 25.0%
! TAAATCATGTGCTAACTATA+AGG + chr7_2:2030963-2030982 None:intergenic 25.0%
!!! TGACATATTAGAGTATTGTA+TGG - chr7_2:2031119-2031138 Msa1043880:CDS 25.0%
! AATAAGGATATCTCATGTAA+AGG - chr7_2:2031254-2031273 Msa1043880:intron 25.0%
! TCTATCACATTAAATAGTCA+TGG - chr7_2:2031495-2031514 Msa1043880:intron 25.0%
!!! TCCAGCAATACTTTAATTTT+TGG - chr7_2:2032018-2032037 Msa1043880:intron 25.0%
!!! ACCAAAAATTAAAGTATTGC+TGG + chr7_2:2032022-2032041 None:intergenic 25.0%
! ACTGTTAATATTATATGGAC+TGG + chr7_2:2032139-2032158 None:intergenic 25.0%
!! AAACATTTTACAACCTTTCT+TGG - chr7_2:2032182-2032201 Msa1043880:intron 25.0%
!! GTTTAGAATCTTTAGATGAT+AGG - chr7_2:2032213-2032232 Msa1043880:intron 25.0%
! TTCTCTTGGTAAAATACATA+GGG + chr7_2:2032249-2032268 None:intergenic 25.0%
! TTTCTCTTGGTAAAATACAT+AGG + chr7_2:2032250-2032269 None:intergenic 25.0%
!! ATTTTACCAAGAGAAATACT+AGG - chr7_2:2032254-2032273 Msa1043880:intron 25.0%
!! ATGCAAAAATCTTCTAAAGA+GGG + chr7_2:2032437-2032456 None:intergenic 25.0%
!! AATGCAAAAATCTTCTAAAG+AGG + chr7_2:2032438-2032457 None:intergenic 25.0%
! ATCAAATGATTGAATTCTTG+AGG - chr7_2:2032866-2032885 Msa1043880:CDS 25.0%
! TCAAATGATTGAATTCTTGA+GGG - chr7_2:2032867-2032886 Msa1043880:CDS 25.0%
! TAATATATCGACAACAATAC+AGG + chr7_2:2033300-2033319 None:intergenic 25.0%
! CACAATTGTAATGTGATATA+GGG - chr7_2:2034262-2034281 Msa1043880:intron 25.0%
! CAGTATAATTGATCTATGAA+TGG + chr7_2:2034303-2034322 None:intergenic 25.0%
! TCATAGATCAATTATACTGT+AGG - chr7_2:2034304-2034323 Msa1043880:intron 25.0%
!!! TCTGATTTTGATAATTCCTT+TGG - chr7_2:2034368-2034387 Msa1043880:five_prime_UTR 25.0%
AAGAATATTTGCAAAACGCT+GGG - chr7_2:2028559-2028578 Msa1043880:three_prime_UTR 30.0%
GAAATGAGAAGATGATGAAT+TGG + chr7_2:2028614-2028633 None:intergenic 30.0%
AGAGATTTGAAAATGGAGAA+TGG + chr7_2:2028706-2028725 None:intergenic 30.0%
TAGAGAGAGAGATTTGAAAA+TGG + chr7_2:2028713-2028732 None:intergenic 30.0%
CGAAATATAGAGAAAACGAT+TGG + chr7_2:2028852-2028871 None:intergenic 30.0%
AGTCAAGCCATAAAATAGAA+TGG + chr7_2:2029680-2029699 None:intergenic 30.0%
!! ATGCTATTGATTTCATCTTG+TGG - chr7_2:2029750-2029769 Msa1043880:intron 30.0%
ATAGATTCATTGACGATACA+CGG - chr7_2:2029787-2029806 Msa1043880:intron 30.0%
TTATTTGCACTCATCTTAGT+TGG - chr7_2:2029884-2029903 Msa1043880:intron 30.0%
! GATAAAGATTTTGCAGAGAA+AGG - chr7_2:2030168-2030187 Msa1043880:intron 30.0%
AGCAAATTAATCTGCATCAA+TGG - chr7_2:2030250-2030269 Msa1043880:intron 30.0%
!!! TTTATTTTGATCTATCACCC+GGG - chr7_2:2030313-2030332 Msa1043880:intron 30.0%
TTAAAAATTCCTGTCAGGTT+TGG - chr7_2:2030785-2030804 Msa1043880:intron 30.0%
!! TTAGCACATGATTTAAGTTG+TGG - chr7_2:2030968-2030987 Msa1043880:intron 30.0%
ACATATACTTGTCTAATAGG+CGG + chr7_2:2031172-2031191 None:intergenic 30.0%
CTGACATATACTTGTCTAAT+AGG + chr7_2:2031175-2031194 None:intergenic 30.0%
CTATTAGACAAGTATATGTC+AGG - chr7_2:2031173-2031192 Msa1043880:intron 30.0%
GCATATGGAACTACTTATTT+GGG + chr7_2:2031205-2031224 None:intergenic 30.0%
TGCATATGGAACTACTTATT+TGG + chr7_2:2031206-2031225 None:intergenic 30.0%
TACAACTTTACAAGTACTCT+AGG + chr7_2:2031329-2031348 None:intergenic 30.0%
CATTTGAATAATTGAACTGC+TGG - chr7_2:2031391-2031410 Msa1043880:CDS 30.0%
AGAATATTATTGAATGCCTG+CGG + chr7_2:2031426-2031445 None:intergenic 30.0%
ATTTGGCAAGTAACTAGATA+TGG + chr7_2:2031467-2031486 None:intergenic 30.0%
AGTCATGGAAGTTATTAAGA+TGG - chr7_2:2031510-2031529 Msa1043880:intron 30.0%
! CTTCTCTATTTTGTCATTAC+AGG - chr7_2:2031564-2031583 Msa1043880:intron 30.0%
CTTTGTGATTATAGAAGGAT+GGG - chr7_2:2031611-2031630 Msa1043880:intron 30.0%
CTGATGAAAATGAAAAAGAG+GGG + chr7_2:2031812-2031831 None:intergenic 30.0%
CCTGATGAAAATGAAAAAGA+GGG + chr7_2:2031813-2031832 None:intergenic 30.0%
TCCTGATGAAAATGAAAAAG+AGG + chr7_2:2031814-2031833 None:intergenic 30.0%
!! TCTTTTTCATTTTCATCAGG+AGG - chr7_2:2031813-2031832 Msa1043880:intron 30.0%
!! CTTTTTCATTTTCATCAGGA+GGG - chr7_2:2031814-2031833 Msa1043880:intron 30.0%
TCTGATTATGTGGTTTAACA+TGG + chr7_2:2032057-2032076 None:intergenic 30.0%
TAAACAAGAGTTTCCAAGAA+AGG + chr7_2:2032198-2032217 None:intergenic 30.0%
TCTCTTGGTAAAATACATAG+GGG + chr7_2:2032248-2032267 None:intergenic 30.0%
! TCTAACACTCACTCTTTTAT+TGG - chr7_2:2032284-2032303 Msa1043880:intron 30.0%
! CTAACACTCACTCTTTTATT+GGG - chr7_2:2032285-2032304 Msa1043880:intron 30.0%
CTAATACTCAGTCTCTTATT+GGG + chr7_2:2032379-2032398 None:intergenic 30.0%
TCTAATACTCAGTCTCTTAT+TGG + chr7_2:2032380-2032399 None:intergenic 30.0%
! AAATCTTCTAAAGAGGGTAT+TGG + chr7_2:2032431-2032450 None:intergenic 30.0%
TCTATTGGAGATATGGATAT+TGG - chr7_2:2032554-2032573 Msa1043880:intron 30.0%
!!! CTTGTTTTACATATGGTACA+GGG + chr7_2:2032592-2032611 None:intergenic 30.0%
!!! ACTTGTTTTACATATGGTAC+AGG + chr7_2:2032593-2032612 None:intergenic 30.0%
ACCATATGTAAAACAAGTGA+AGG - chr7_2:2032595-2032614 Msa1043880:intron 30.0%
!!! ACCTTCACTTGTTTTACATA+TGG + chr7_2:2032599-2032618 None:intergenic 30.0%
!! ATATTTTTGTATGCCTGTGT+GGG + chr7_2:2032744-2032763 None:intergenic 30.0%
!! TATATTTTTGTATGCCTGTG+TGG + chr7_2:2032745-2032764 None:intergenic 30.0%
!! TCAAAGTTTCTGAAACATTG+TGG + chr7_2:2032844-2032863 None:intergenic 30.0%
ACAATGTTTCAGAAACTTTG+AGG - chr7_2:2032843-2032862 Msa1043880:CDS 30.0%
CAAATGATTGAATTCTTGAG+GGG - chr7_2:2032868-2032887 Msa1043880:CDS 30.0%
!! TATCTCACTTTTACAATCTG+TGG + chr7_2:2033087-2033106 None:intergenic 30.0%
ATCATAGTGGTATGAAACTA+TGG - chr7_2:2033190-2033209 Msa1043880:intron 30.0%
CATGTTTCGTAAAAAGTCTT+CGG - chr7_2:2033385-2033404 Msa1043880:intron 30.0%
TGTCAAGTAGAAATAAAACC+CGG - chr7_2:2033637-2033656 Msa1043880:CDS 30.0%
TAGATTATGGACACATTTCA+AGG + chr7_2:2033823-2033842 None:intergenic 30.0%
!! CAAGATAGTGGATTAGATTA+TGG + chr7_2:2033836-2033855 None:intergenic 30.0%
CATAATCTAATCCACTATCT+TGG - chr7_2:2033834-2033853 Msa1043880:five_prime_UTR 30.0%
AAATGAAAAGACCAAGATAG+TGG + chr7_2:2033848-2033867 None:intergenic 30.0%
ATCAAAATTGTTCATTCGAC+TGG - chr7_2:2033930-2033949 Msa1043880:intron 30.0%
! TTTTTCTAACAAACTGCTGT+TGG + chr7_2:2034056-2034075 None:intergenic 30.0%
! ATTCTAACATGGAAGTGTAA+TGG - chr7_2:2034075-2034094 Msa1043880:intron 30.0%
TTCATTGTATATGGGTCATT+TGG - chr7_2:2034201-2034220 Msa1043880:intron 30.0%
CCTATATCACATTACAATTG+TGG + chr7_2:2034264-2034283 None:intergenic 30.0%
CCACAATTGTAATGTGATAT+AGG - chr7_2:2034261-2034280 Msa1043880:intron 30.0%
GAAGAATATTTGCAAAACGC+TGG - chr7_2:2028558-2028577 Msa1043880:three_prime_UTR 35.0%
GAGGAAGAAGAAGAAGAAAA+CGG + chr7_2:2028668-2028687 None:intergenic 35.0%
AAAATGGAGAATGGAGAAAG+AGG + chr7_2:2028697-2028716 None:intergenic 35.0%
GAAAACGAAAGCGAGAAAAA+CGG + chr7_2:2028797-2028816 None:intergenic 35.0%
AATACATTGAACGACGTTGA+TGG + chr7_2:2028825-2028844 None:intergenic 35.0%
! AATGATCATTTTACCTGTCC+AGG - chr7_2:2029038-2029057 Msa1043880:three_prime_UTR 35.0%
TGTTAAAGTCTGATTGTCAG+AGG - chr7_2:2029374-2029393 Msa1043880:CDS 35.0%
CATATTCTGTTTATGGGGTA+TGG - chr7_2:2029419-2029438 Msa1043880:intron 35.0%
CGAGAGAAAAAAACGAGATT+AGG - chr7_2:2029707-2029726 Msa1043880:CDS 35.0%
ATTAGGTATCATTGCAAGGA+TGG - chr7_2:2029724-2029743 Msa1043880:intron 35.0%
GAACAGTTCCCTAATTGTTA+TGG - chr7_2:2029855-2029874 Msa1043880:intron 35.0%
CAATGCATTCAGTGCATAAA+TGG + chr7_2:2029929-2029948 None:intergenic 35.0%
AGGGAAAACACACAAAAACT+AGG + chr7_2:2029963-2029982 None:intergenic 35.0%
! TAGTTTTTGTGTGTTTTCCC+TGG - chr7_2:2029962-2029981 Msa1043880:CDS 35.0%
CACATGAGAAAATGAAACCA+GGG + chr7_2:2029982-2030001 None:intergenic 35.0%
! TGCTGCTGCTATTTATTCTA+AGG - chr7_2:2030041-2030060 Msa1043880:intron 35.0%
! AGATTTTGCAGAGAAAGGTA+TGG - chr7_2:2030173-2030192 Msa1043880:intron 35.0%
!!! TTATTTTGATCTATCACCCG+GGG - chr7_2:2030314-2030333 Msa1043880:intron 35.0%
!!! TGCTGTGTATTTTGAAACCT+TGG - chr7_2:2030395-2030414 Msa1043880:CDS 35.0%
GATCTAGTGTCAAATCTTCA+GGG + chr7_2:2030445-2030464 None:intergenic 35.0%
!! AAAAATGCCCTGCTTTGAAA+AGG + chr7_2:2030569-2030588 None:intergenic 35.0%
!! TCTTTGCCTATTTTAGACTC+TGG - chr7_2:2030647-2030666 Msa1043880:intron 35.0%
! TAACAATGCGACATTGCTTT+TGG - chr7_2:2030711-2030730 Msa1043880:intron 35.0%
CTTCCTTGATTAAAGCTTGT+AGG - chr7_2:2030829-2030848 Msa1043880:intron 35.0%
AAATGTTAGTATTGTGTGGG+AGG + chr7_2:2030925-2030944 None:intergenic 35.0%
!! TTTAAGTTGTGGACTACATC+AGG - chr7_2:2030979-2030998 Msa1043880:intron 35.0%
!!! GTTTTAAAATGTGGTTGCAG+TGG + chr7_2:2031085-2031104 None:intergenic 35.0%
!!! TAGCACGTGGTTTTAAAATG+TGG + chr7_2:2031094-2031113 None:intergenic 35.0%
!! GAGTATTGTATGGTTGATGA+AGG - chr7_2:2031129-2031148 Msa1043880:CDS 35.0%
AACACGCTAACAAATGCATA+TGG + chr7_2:2031220-2031239 None:intergenic 35.0%
! ATATCTCATGTAAAGGCATG+TGG - chr7_2:2031261-2031280 Msa1043880:intron 35.0%
GCAAGTAACTAGATATGGAA+TGG + chr7_2:2031462-2031481 None:intergenic 35.0%
GTCATTACAGGACAAAAATC+AGG - chr7_2:2031576-2031595 Msa1043880:intron 35.0%
GTCACCTTTGTGATTATAGA+AGG - chr7_2:2031606-2031625 Msa1043880:intron 35.0%
CCATCCTTCTATAATCACAA+AGG + chr7_2:2031613-2031632 None:intergenic 35.0%
CCTTTGTGATTATAGAAGGA+TGG - chr7_2:2031610-2031629 Msa1043880:intron 35.0%
! TACTAGAATCTTCTGAAGGA+GGG - chr7_2:2031670-2031689 Msa1043880:intron 35.0%
ATTACTTGTCAGCAGATCAT+AGG - chr7_2:2031697-2031716 Msa1043880:intron 35.0%
!!! ATTTTTGGTGAGCAACTGTT+TGG - chr7_2:2031761-2031780 Msa1043880:intron 35.0%
!! CCCTCTTTTTCATTTTCATC+AGG - chr7_2:2031810-2031829 Msa1043880:intron 35.0%
! AGGTTGGTCGTTTAAATACA+GGG - chr7_2:2031861-2031880 Msa1043880:intron 35.0%
! TTTATCTTTGGAAGAGAGTG+GGG + chr7_2:2031964-2031983 None:intergenic 35.0%
! CTTTATCTTTGGAAGAGAGT+GGG + chr7_2:2031965-2031984 None:intergenic 35.0%
! TCTTTATCTTTGGAAGAGAG+TGG + chr7_2:2031966-2031985 None:intergenic 35.0%
CTTCCAAAGATAAAGAGAAG+AGG - chr7_2:2031970-2031989 Msa1043880:intron 35.0%
TGTCCTCTTCTCTTTATCTT+TGG + chr7_2:2031976-2031995 None:intergenic 35.0%
GGTTTAACATGGCAAACATT+GGG + chr7_2:2032046-2032065 None:intergenic 35.0%
TGGTTTAACATGGCAAACAT+TGG + chr7_2:2032047-2032066 None:intergenic 35.0%
ACTCTTCATCTCTGATTATG+TGG + chr7_2:2032067-2032086 None:intergenic 35.0%
AGTGTTCCTAGTATTTCTCT+TGG + chr7_2:2032263-2032282 None:intergenic 35.0%
!! AAGAGGGTATTGGTAAAATG+AGG + chr7_2:2032421-2032440 None:intergenic 35.0%
! ACTAGGTTAAGGATTTTTGC+AGG - chr7_2:2032487-2032506 Msa1043880:intron 35.0%
GTCAACTCAATCTTACACAT+AGG - chr7_2:2032621-2032640 Msa1043880:intron 35.0%
TAAGTAACCTTGAGAGCAAA+CGG + chr7_2:2032690-2032709 None:intergenic 35.0%
!! TCTTTTGATTAATCCCACAC+AGG - chr7_2:2032728-2032747 Msa1043880:intron 35.0%
AAATGCACACAAGGATTTCT+TGG + chr7_2:2032915-2032934 None:intergenic 35.0%
CATTCAGAAAAATGCACACA+AGG + chr7_2:2032924-2032943 None:intergenic 35.0%
TACCACTATGATGTTGAAGT+CGG + chr7_2:2033182-2033201 None:intergenic 35.0%
TCACTTCACTTAATGTCTTC+AGG - chr7_2:2033238-2033257 Msa1043880:intron 35.0%
TGTTGTCGATATATTACCTC+AGG - chr7_2:2033304-2033323 Msa1043880:intron 35.0%
!!! TTTACTGGCTTCTTTTGATG+TGG + chr7_2:2033350-2033369 None:intergenic 35.0%
CATCAAAAGAAGCCAGTAAA+AGG - chr7_2:2033350-2033369 Msa1043880:intron 35.0%
! CGAAGACTTTTTACGAAACA+TGG + chr7_2:2033387-2033406 None:intergenic 35.0%
! AGAATGCTCGTTTAAAATGC+AGG - chr7_2:2033560-2033579 Msa1043880:intron 35.0%
AACTTGAACATGTTGCATAG+TGG + chr7_2:2033601-2033620 None:intergenic 35.0%
! TAATGATCTTTTCCCTTCCA+TGG + chr7_2:2033761-2033780 None:intergenic 35.0%
ATGGAAGGGAAAAGATCATT+AGG - chr7_2:2033760-2033779 Msa1043880:exon 35.0%
ATTTCAGATAGACTTAGCAG+CGG - chr7_2:2033864-2033883 Msa1043880:five_prime_UTR 35.0%
CTCAACCTTTCACAAAACTT+GGG + chr7_2:2034107-2034126 None:intergenic 35.0%
ACTCAACCTTTCACAAAACT+TGG + chr7_2:2034108-2034127 None:intergenic 35.0%
GTGAAAGGTTGAGTTATAAG+TGG - chr7_2:2034114-2034133 Msa1043880:intron 35.0%
TGGGATCAGTTCATTGTATA+TGG - chr7_2:2034192-2034211 Msa1043880:intron 35.0%
GGGATCAGTTCATTGTATAT+GGG - chr7_2:2034193-2034212 Msa1043880:intron 35.0%
TACAAGACCCAATCTTCATA+TGG + chr7_2:2034394-2034413 None:intergenic 35.0%
GAAAGCGAGAAAAACGGTAA+TGG + chr7_2:2028791-2028810 None:intergenic 40.0%
GAATTTGAACTCTGTGGCTT+TGG - chr7_2:2029063-2029082 Msa1043880:three_prime_UTR 40.0%
CTCTTTCGGTTCTATTGAAG+CGG - chr7_2:2029269-2029288 Msa1043880:CDS 40.0%
TCTTTCGGTTCTATTGAAGC+GGG - chr7_2:2029270-2029289 Msa1043880:CDS 40.0%
GAGAAACCTGAGATTGTTCA+TGG - chr7_2:2029313-2029332 Msa1043880:CDS 40.0%
CAAGCTGGACAAAGTAAGAA+AGG - chr7_2:2029337-2029356 Msa1043880:CDS 40.0%
TGGACAAAGTAAGAAAGGAG+AGG - chr7_2:2029342-2029361 Msa1043880:CDS 40.0%
AAAGTCTGATTGTCAGAGGA+TGG - chr7_2:2029378-2029397 Msa1043880:CDS 40.0%
CGAGATTAGGTATCATTGCA+AGG - chr7_2:2029720-2029739 Msa1043880:CDS 40.0%
CCACATGAGAAAATGAAACC+AGG + chr7_2:2029983-2030002 None:intergenic 40.0%
! CCTGGTTTCATTTTCTCATG+TGG - chr7_2:2029980-2029999 Msa1043880:CDS 40.0%
! CAGCTATTTGATGGACACAA+TGG - chr7_2:2030015-2030034 Msa1043880:intron 40.0%
TCATCTCTGTTAAGATCTGG+AGG + chr7_2:2030099-2030118 None:intergenic 40.0%
CACTCATCTCTGTTAAGATC+TGG + chr7_2:2030102-2030121 None:intergenic 40.0%
CAGATCTTAACAGAGATGAG+TGG - chr7_2:2030100-2030119 Msa1043880:intron 40.0%
TGCATCAATGGCAACCTTAA+TGG - chr7_2:2030262-2030281 Msa1043880:intron 40.0%
! TATATTACTCTGAGAAGCCC+CGG + chr7_2:2030334-2030353 None:intergenic 40.0%
GGATCTAGTGTCAAATCTTC+AGG + chr7_2:2030446-2030465 None:intergenic 40.0%
! GTGATAGCTTTGCTCTCAAA+AGG + chr7_2:2030467-2030486 None:intergenic 40.0%
GTGCCCAATCCTAACAAATA+TGG + chr7_2:2030601-2030620 None:intergenic 40.0%
! TATTTGTTAGGATTGGGCAC+TGG - chr7_2:2030601-2030620 Msa1043880:intron 40.0%
! TCGTGTCCAGAGTCTAAAAT+AGG + chr7_2:2030656-2030675 None:intergenic 40.0%
CAATGTCGCATTGTTAAAGC+TGG + chr7_2:2030707-2030726 None:intergenic 40.0%
! GTGCCTACAAGCTTTAATCA+AGG + chr7_2:2030835-2030854 None:intergenic 40.0%
ATTAAAGCTTGTAGGCACGT+AGG - chr7_2:2030837-2030856 Msa1043880:intron 40.0%
TAGGAGATGTACTGTTTGCT+TGG - chr7_2:2030856-2030875 Msa1043880:intron 40.0%
! TTGTTTGATGCGGACTAATG+TGG + chr7_2:2031048-2031067 None:intergenic 40.0%
GTGGGTATAGTTGTTTGATG+CGG + chr7_2:2031058-2031077 None:intergenic 40.0%
ATATGTCAACTACTAGCACG+TGG + chr7_2:2031107-2031126 None:intergenic 40.0%
! GTTGTCATTTGCCGTTGATT+GGG - chr7_2:2031283-2031302 Msa1043880:CDS 40.0%
GTTGTAACAGTTGCATCAGT+TGG - chr7_2:2031633-2031652 Msa1043880:intron 40.0%
TGCGTACTAGAATCTTCTGA+AGG - chr7_2:2031666-2031685 Msa1043880:intron 40.0%
! GTACTAGAATCTTCTGAAGG+AGG - chr7_2:2031669-2031688 Msa1043880:intron 40.0%
! GAGGTTGGTCGTTTAAATAC+AGG - chr7_2:2031860-2031879 Msa1043880:intron 40.0%
! GGTTGGTCGTTTAAATACAG+GGG - chr7_2:2031862-2031881 Msa1043880:intron 40.0%
GTTGGTCGTTTAAATACAGG+GGG - chr7_2:2031863-2031882 Msa1043880:intron 40.0%
!! TGGGGTGTTTAAGCTTGTTA+TGG + chr7_2:2031946-2031965 None:intergenic 40.0%
GAGTAATGTGAACCATACTG+TGG - chr7_2:2032083-2032102 Msa1043880:intron 40.0%
! TTTTATTGGGTGACTCACGT+GGG - chr7_2:2032298-2032317 Msa1043880:intron 40.0%
GAAATGGCTCCTACATAAAG+TGG + chr7_2:2032329-2032348 None:intergenic 40.0%
! TGAATCCCACACTTTGGAAA+TGG + chr7_2:2032345-2032364 None:intergenic 40.0%
!! TGGTAAAATGAGGAGTGCTA+TGG + chr7_2:2032411-2032430 None:intergenic 40.0%
ACTGATATAACTGGCTGACT+AGG - chr7_2:2032470-2032489 Msa1043880:intron 40.0%
ATAACTGGCTGACTAGGTTA+AGG - chr7_2:2032476-2032495 Msa1043880:intron 40.0%
! GGTTAAGGATTTTTGCAGGT+TGG - chr7_2:2032491-2032510 Msa1043880:intron 40.0%
TTGTGTCTTTCACGGTCTAT+TGG - chr7_2:2032539-2032558 Msa1043880:intron 40.0%
TTCACGGTCTATTGGAGATA+TGG - chr7_2:2032547-2032566 Msa1043880:intron 40.0%
CTTACACATAGGACAGTGTT+TGG - chr7_2:2032632-2032651 Msa1043880:intron 40.0%
AAGTAACCTTGAGAGCAAAC+GGG + chr7_2:2032689-2032708 None:intergenic 40.0%
GCACGTAAAAGACAAAACAG+CGG + chr7_2:2032786-2032805 None:intergenic 40.0%
! TTATCTGCAGTGATGGTGTT+TGG - chr7_2:2032998-2033017 Msa1043880:intron 40.0%
! TATCTGCAGTGATGGTGTTT+GGG - chr7_2:2032999-2033018 Msa1043880:intron 40.0%
!!! TTGTGGGACTGTTTTGATGT+TGG - chr7_2:2033141-2033160 Msa1043880:intron 40.0%
!!! TGTGGGACTGTTTTGATGTT+GGG - chr7_2:2033142-2033161 Msa1043880:intron 40.0%
TTCCGACTTCAACATCATAG+TGG - chr7_2:2033177-2033196 Msa1043880:intron 40.0%
TCAGGAAGCTTTACAAGCAA+AGG - chr7_2:2033256-2033275 Msa1043880:intron 40.0%
CAGGAAGCTTTACAAGCAAA+GGG - chr7_2:2033257-2033276 Msa1043880:intron 40.0%
AGTAGAAATAAAACCCGGAG+AGG - chr7_2:2033642-2033661 Msa1043880:CDS 40.0%
GTAGAAATAAAACCCGGAGA+GGG - chr7_2:2033643-2033662 Msa1043880:CDS 40.0%
ATGTACTGAAATACCCTCTC+CGG + chr7_2:2033659-2033678 None:intergenic 40.0%
!! AGAGGGTATTTCAGTACATG+AGG - chr7_2:2033660-2033679 Msa1043880:CDS 40.0%
!! GAGGGTATTTCAGTACATGA+GGG - chr7_2:2033661-2033680 Msa1043880:CDS 40.0%
TGGCAACTAAAGCAAAGGAA+AGG + chr7_2:2033724-2033743 None:intergenic 40.0%
TTTCCTTTGCTTTAGTTGCC+AGG - chr7_2:2033723-2033742 Msa1043880:CDS 40.0%
AGAAGAAAGAAGCCATGGAA+GGG - chr7_2:2033746-2033765 Msa1043880:CDS 40.0%
GAAGATGGACAGAAATGAAG+AGG + chr7_2:2033801-2033820 None:intergenic 40.0%
TGGACACATTTCAAGGAAGA+TGG + chr7_2:2033816-2033835 None:intergenic 40.0%
! GGGGCTTTATGGATCTAATT+TGG - chr7_2:2034002-2034021 Msa1043880:intron 40.0%
!! AACCACCCAAGTTTTGTGAA+AGG - chr7_2:2034099-2034118 Msa1043880:intron 40.0%
AACCTTTCACAAAACTTGGG+TGG + chr7_2:2034104-2034123 None:intergenic 40.0%
TATAAGTGGCAGTTCACAAC+AGG - chr7_2:2034128-2034147 Msa1043880:intron 40.0%
TCCTTTGGCCATATGAAGAT+TGG - chr7_2:2034383-2034402 Msa1043880:five_prime_UTR 40.0%
CCTTTGGCCATATGAAGATT+GGG - chr7_2:2034384-2034403 Msa1043880:five_prime_UTR 40.0%
TGTGTGATCCAAAAACGACG+CGG + chr7_2:2028587-2028606 None:intergenic 45.0%
!! ACGGTGTCGTTTAGATGATC+AGG + chr7_2:2028649-2028668 None:intergenic 45.0%
!! ATGGAGAAAGAGGTGTTACG+AGG + chr7_2:2028687-2028706 None:intergenic 45.0%
! GAGAAAAACGGTAATGGTCG+AGG + chr7_2:2028785-2028804 None:intergenic 45.0%
! GATCATTTTACCTGTCCAGG+TGG - chr7_2:2029041-2029060 Msa1043880:three_prime_UTR 45.0%
AGTTCAAATTCCACCTGGAC+AGG + chr7_2:2029054-2029073 None:intergenic 45.0%
CACAGAGTTCAAATTCCACC+TGG + chr7_2:2029059-2029078 None:intergenic 45.0%
CAGGTGGAATTTGAACTCTG+TGG - chr7_2:2029057-2029076 Msa1043880:three_prime_UTR 45.0%
! GATTTGAACTCTGTCGCTTG+AGG - chr7_2:2029089-2029108 Msa1043880:exon 45.0%
! TCTGTCGCTTGAGGTTATTC+TGG - chr7_2:2029098-2029117 Msa1043880:exon 45.0%
GGGAAAGAACAATGTCTGTG+AGG - chr7_2:2029224-2029243 Msa1043880:CDS 45.0%
GAGGAGTGAACACCATCAAA+CGG - chr7_2:2029243-2029262 Msa1043880:CDS 45.0%
CCATCAAACGGTTCCTCTTT+CGG - chr7_2:2029255-2029274 Msa1043880:CDS 45.0%
CGCTTCAATAGAACCGAAAG+AGG + chr7_2:2029271-2029290 None:intergenic 45.0%
GCTTGACCATGAACAATCTC+AGG + chr7_2:2029322-2029341 None:intergenic 45.0%
GAGATTGTTCATGGTCAAGC+TGG - chr7_2:2029322-2029341 Msa1043880:CDS 45.0%
TCTGATTGTCAGAGGATGGT+TGG - chr7_2:2029382-2029401 Msa1043880:CDS 45.0%
AATCCAGCAACCAAAGCTCT+AGG + chr7_2:2030138-2030157 None:intergenic 45.0%
! ATATTACTCTGAGAAGCCCC+GGG + chr7_2:2030333-2030352 None:intergenic 45.0%
! AGGGAACTCCTTTTCAAAGC+AGG - chr7_2:2030558-2030577 Msa1043880:intron 45.0%
! GGGAACTCCTTTTCAAAGCA+GGG - chr7_2:2030559-2030578 Msa1043880:intron 45.0%
GCACTGGAATTGAACAGCTT+AGG - chr7_2:2030617-2030636 Msa1043880:intron 45.0%
GTTAGAGCTGATGCCTTAAC+AGG + chr7_2:2030685-2030704 None:intergenic 45.0%
AAACTGCTTCCAAACCTGAC+AGG + chr7_2:2030797-2030816 None:intergenic 45.0%
GAGATGTACTGTTTGCTTGG+TGG - chr7_2:2030859-2030878 Msa1043880:intron 45.0%
! TGTACTGTTTGCTTGGTGGT+TGG - chr7_2:2030863-2030882 Msa1043880:intron 45.0%
! GTACTGTTTGCTTGGTGGTT+GGG - chr7_2:2030864-2030883 Msa1043880:intron 45.0%
! TACTGTTTGCTTGGTGGTTG+GGG - chr7_2:2030865-2030884 Msa1043880:intron 45.0%
TGTTAGTATTGTGTGGGAGG+TGG + chr7_2:2030922-2030941 None:intergenic 45.0%
! GCGGACTAATGTGGTAACAT+TGG + chr7_2:2031039-2031058 None:intergenic 45.0%
GACAAGTATATGTCAGGCGT+AGG - chr7_2:2031179-2031198 Msa1043880:intron 45.0%
! GGTTGTCATTTGCCGTTGAT+TGG - chr7_2:2031282-2031301 Msa1043880:CDS 45.0%
AGAAGATTCTAGTACGCAGC+GGG + chr7_2:2031664-2031683 None:intergenic 45.0%
CAGAAGATTCTAGTACGCAG+CGG + chr7_2:2031665-2031684 None:intergenic 45.0%
AGGGTTCGTATCACTTCTAG+CGG - chr7_2:2031833-2031852 Msa1043880:intron 45.0%
CCTCTCAGTTTACCACAGTA+TGG + chr7_2:2032098-2032117 None:intergenic 45.0%
CCATACTGTGGTAAACTGAG+AGG - chr7_2:2032095-2032114 Msa1043880:intron 45.0%
TACTGTGGTAAACTGAGAGG+CGG - chr7_2:2032098-2032117 Msa1043880:intron 45.0%
! CTTTTATTGGGTGACTCACG+TGG - chr7_2:2032297-2032316 Msa1043880:intron 45.0%
TGGGTCTCACCACTTTATGT+AGG - chr7_2:2032317-2032336 Msa1043880:intron 45.0%
TAGGAGCCATTTCCAAAGTG+TGG - chr7_2:2032336-2032355 Msa1043880:intron 45.0%
AGGAGCCATTTCCAAAGTGT+GGG - chr7_2:2032337-2032356 Msa1043880:intron 45.0%
TCCAAAGTGTGGGATTCACA+CGG - chr7_2:2032347-2032366 Msa1043880:intron 45.0%
!! AGGTTGGTCCTTTGAGATGT+TGG - chr7_2:2032507-2032526 Msa1043880:intron 45.0%
AGTAACCTTGAGAGCAAACG+GGG + chr7_2:2032688-2032707 None:intergenic 45.0%
ACAGCGGTGAAAATGTGTGT+AGG + chr7_2:2032770-2032789 None:intergenic 45.0%
CATGCCACGACAACAATCAA+GGG + chr7_2:2033046-2033065 None:intergenic 45.0%
ACATGCCACGACAACAATCA+AGG + chr7_2:2033047-2033066 None:intergenic 45.0%
! TTTTGATGTGGTACAGGAGC+AGG + chr7_2:2033338-2033357 None:intergenic 45.0%
! GGCTTCTTTTGATGTGGTAC+AGG + chr7_2:2033344-2033363 None:intergenic 45.0%
GCCAGTAAAAGGAATGCTCA+AGG - chr7_2:2033361-2033380 Msa1043880:intron 45.0%
! GCCTTGAGCATTCCTTTTAC+TGG + chr7_2:2033365-2033384 None:intergenic 45.0%
AGAATACATGGAGCCAGATG+TGG - chr7_2:2033430-2033449 Msa1043880:intron 45.0%
TGTACTGAAATACCCTCTCC+GGG + chr7_2:2033658-2033677 None:intergenic 45.0%
TCTCCTGGCAACTAAAGCAA+AGG + chr7_2:2033729-2033748 None:intergenic 45.0%
GAGAAGAAAGAAGCCATGGA+AGG - chr7_2:2033745-2033764 Msa1043880:CDS 45.0%
TGACTCCCTTCTATCATCAC+AGG - chr7_2:2033981-2034000 Msa1043880:intron 45.0%
GACTCCCTTCTATCATCACA+GGG - chr7_2:2033982-2034001 Msa1043880:intron 45.0%
ACTCCCTTCTATCATCACAG+GGG - chr7_2:2033983-2034002 Msa1043880:intron 45.0%
AAGCCCCTGTGATGATAGAA+GGG + chr7_2:2033989-2034008 None:intergenic 45.0%
AAAGCCCCTGTGATGATAGA+AGG + chr7_2:2033990-2034009 None:intergenic 45.0%
CTATCATCACAGGGGCTTTA+TGG - chr7_2:2033991-2034010 Msa1043880:intron 45.0%
CCCAATCTTCATATGGCCAA+AGG + chr7_2:2034387-2034406 None:intergenic 45.0%
! CGCTGGTTGAGTCTAGTTGT+TGG - chr7_2:2029173-2029192 Msa1043880:intron 50.0%
CCGAAAGAGGAACCGTTTGA+TGG + chr7_2:2029258-2029277 None:intergenic 50.0%
!! TGTCAGAGGATGGTTGGTGA+TGG - chr7_2:2029388-2029407 Msa1043880:CDS 50.0%
!! GTCAGAGGATGGTTGGTGAT+GGG - chr7_2:2029389-2029408 Msa1043880:CDS 50.0%
!! TCAGAGGATGGTTGGTGATG+GGG - chr7_2:2029390-2029409 Msa1043880:CDS 50.0%
! TTGCCTAGAGCTTTGGTTGC+TGG - chr7_2:2030132-2030151 Msa1043880:intron 50.0%
GACACGAGTCTTGCCTGTTA+AGG - chr7_2:2030669-2030688 Msa1043880:intron 50.0%
! GTGGACTACATCAGGCAATG+CGG - chr7_2:2030987-2031006 Msa1043880:intron 50.0%
GCCTGGTATCTCCCAATCAA+CGG + chr7_2:2031297-2031316 None:intergenic 50.0%
! ACTCTAGGAACTAGAGAGCC+TGG + chr7_2:2031314-2031333 None:intergenic 50.0%
CTGCTGGAAGTTATAACCGC+AGG - chr7_2:2031407-2031426 Msa1043880:intron 50.0%
GTTCGTATCACTTCTAGCGG+CGG - chr7_2:2031836-2031855 Msa1043880:intron 50.0%
GGTCGTTTAAATACAGGGGG+AGG - chr7_2:2031866-2031885 Msa1043880:intron 50.0%
ACTGTGGTAAACTGAGAGGC+GGG - chr7_2:2032099-2032118 Msa1043880:intron 50.0%
CCAAAGTGTGGGATTCACAC+GGG - chr7_2:2032348-2032367 Msa1043880:intron 50.0%
TCAATTCAGCTGTCTACCGC+TGG - chr7_2:2032964-2032983 Msa1043880:CDS 50.0%
CATCACTGCAGATAACGAGC+CGG + chr7_2:2032993-2033012 None:intergenic 50.0%
GGATGCTTTACCTGCAGAAG+TGG - chr7_2:2033020-2033039 Msa1043880:intron 50.0%
TACAGCTCCACTACCACATC+TGG + chr7_2:2033446-2033465 None:intergenic 50.0%
!! TGTGGTAGTGGAGCTGTATG+AGG - chr7_2:2033448-2033467 Msa1043880:intron 50.0%
! GTAGTGGAGCTGTATGAGGA+AGG - chr7_2:2033452-2033471 Msa1043880:intron 50.0%
GCTCTGCTATGCTTTCAGAG+AGG - chr7_2:2033474-2033493 Msa1043880:intron 50.0%
AAAGGAAAGGTCCATCCCAG+GGG + chr7_2:2033711-2033730 None:intergenic 50.0%
CAAAGGAAAGGTCCATCCCA+GGG + chr7_2:2033712-2033731 None:intergenic 50.0%
CCATGGCTTCTTTCTTCTCC+TGG + chr7_2:2033744-2033763 None:intergenic 50.0%
CCAGGAGAAGAAAGAAGCCA+TGG - chr7_2:2033741-2033760 Msa1043880:CDS 50.0%
GTCATTGTTGCTACGCTAGG+AGG + chr7_2:2033965-2033984 None:intergenic 50.0%
GGAGTCATTGTTGCTACGCT+AGG + chr7_2:2033968-2033987 None:intergenic 50.0%
TGGCAGTTCACAACAGGAAG+TGG - chr7_2:2034134-2034153 Msa1043880:intron 50.0%
GGCAGTTCACAACAGGAAGT+GGG - chr7_2:2034135-2034154 Msa1043880:intron 50.0%
! AAAGAAGCGCGCATTGTCGC+TGG - chr7_2:2029156-2029175 Msa1043880:intron 55.0%
AGCAGCGTTGCCTAGAGCTT+TGG - chr7_2:2030125-2030144 Msa1043880:intron 55.0%
! TGTTTGCTTGGTGGTTGGGG+TGG - chr7_2:2030868-2030887 Msa1043880:intron 55.0%
! GTTTGCTTGGTGGTTGGGGT+GGG - chr7_2:2030869-2030888 Msa1043880:intron 55.0%
! TTTGCTTGGTGGTTGGGGTG+GGG - chr7_2:2030870-2030889 Msa1043880:intron 55.0%
GGGGGAGTGATAAGGAGAGA+GGG - chr7_2:2030890-2030909 Msa1043880:intron 55.0%
TGTGGTTGCAGTGGCGTTGT+GGG + chr7_2:2031076-2031095 None:intergenic 55.0%
ATGTGGTTGCAGTGGCGTTG+TGG + chr7_2:2031077-2031096 None:intergenic 55.0%
! GCCGTTGATTGGGAGATACC+AGG - chr7_2:2031293-2031312 Msa1043880:CDS 55.0%
TATCACTTCTAGCGGCGGTG+AGG - chr7_2:2031841-2031860 Msa1043880:intron 55.0%
! AAATACAGGGGGAGGTGCAG+AGG - chr7_2:2031874-2031893 Msa1043880:intron 55.0%
CCCGTGTGAATCCCACACTT+TGG + chr7_2:2032351-2032370 None:intergenic 55.0%
!! GGTCCTTTGAGATGTTGGCC+CGG - chr7_2:2032512-2032531 Msa1043880:intron 55.0%
CGTGAAAGACACAAGCCACC+GGG + chr7_2:2032533-2032552 None:intergenic 55.0%
CCGTGAAAGACACAAGCCAC+CGG + chr7_2:2032534-2032553 None:intergenic 55.0%
! CCGGTGGCTTGTGTCTTTCA+CGG - chr7_2:2032531-2032550 Msa1043880:intron 55.0%
GAGAGCAAACGGGGTGCAAA+TGG + chr7_2:2032679-2032698 None:intergenic 55.0%
TTGCACCCCGTTTGCTCTCA+AGG - chr7_2:2032680-2032699 Msa1043880:intron 55.0%
ATTCAGCTGTCTACCGCTGG+AGG - chr7_2:2032967-2032986 Msa1043880:intron 55.0%
CGGCTCGTTATCTGCAGTGA+TGG - chr7_2:2032991-2033010 Msa1043880:intron 55.0%
CAATCAAGGGCCACTTCTGC+AGG + chr7_2:2033033-2033052 None:intergenic 55.0%
GTGGCCCTTGATTGTTGTCG+TGG - chr7_2:2033039-2033058 Msa1043880:intron 55.0%
TTGTCGTGGCATGTCAGCAG+AGG - chr7_2:2033053-2033072 Msa1043880:intron 55.0%
TGATGTGGTACAGGAGCAGG+TGG + chr7_2:2033335-2033354 None:intergenic 55.0%
CATGGAGCCAGATGTGGTAG+TGG - chr7_2:2033436-2033455 Msa1043880:intron 55.0%
GCAAAGGAAAGGTCCATCCC+AGG + chr7_2:2033713-2033732 None:intergenic 55.0%
!! GCTGGGATCCGCGTCGTTTT+TGG - chr7_2:2028576-2028595 Msa1043880:three_prime_UTR 60.0%
! TTGCTTGGTGGTTGGGGTGG+GGG - chr7_2:2030871-2030890 Msa1043880:intron 60.0%
TTGGGGTGGGGGGAGTGATA+AGG - chr7_2:2030882-2030901 Msa1043880:intron 60.0%
GGGGGGAGTGATAAGGAGAG+AGG - chr7_2:2030889-2030908 Msa1043880:intron 60.0%
ACTTCTAGCGGCGGTGAGGT+TGG - chr7_2:2031845-2031864 Msa1043880:intron 60.0%
CCACCGGGCCAACATCTCAA+AGG + chr7_2:2032518-2032537 None:intergenic 60.0%
!! CCTTTGAGATGTTGGCCCGG+TGG - chr7_2:2032515-2032534 Msa1043880:intron 60.0%
! ACCCTCAAAAAGTGCGCCCC+TGG - chr7_2:2033692-2033711 Msa1043880:CDS 60.0%
!! CCCAGGGGCGCACTTTTTGA+GGG + chr7_2:2033696-2033715 None:intergenic 60.0%
! CCCTCAAAAAGTGCGCCCCT+GGG - chr7_2:2033693-2033712 Msa1043880:CDS 60.0%
!! TCCCAGGGGCGCACTTTTTG+AGG + chr7_2:2033697-2033716 None:intergenic 60.0%
! CAAAAAGTGCGCCCCTGGGA+TGG - chr7_2:2033697-2033716 Msa1043880:CDS 60.0%
! TGCTTGGTGGTTGGGGTGGG+GGG - chr7_2:2030872-2030891 Msa1043880:intron 65.0%
AGCTGTCTACCGCTGGAGGC+CGG - chr7_2:2032971-2032990 Msa1043880:intron 65.0%
GATAACGAGCCGGCCTCCAG+CGG + chr7_2:2032983-2033002 None:intergenic 65.0%
GGAGCAGGTGGCTTCTCCTG+AGG + chr7_2:2033323-2033342 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 2028526 2034476 2028526 ID=Msa1043880;Name=Msa1043880
chr7_2 mRNA 2028526 2034476 2028526 ID=Msa1043880-mRNA-1;Parent=Msa1043880;Name=Msa1043880-mRNA-1;_AED=0.06;_eAED=0.06;_QI=337|1|1|1|0.88|0.8|10|577|429
chr7_2 exon 2028526 2029131 2028526 ID=Msa1043880-mRNA-1:exon:461;Parent=Msa1043880-mRNA-1
chr7_2 exon 2029221 2029420 2029221 ID=Msa1043880-mRNA-1:exon:460;Parent=Msa1043880-mRNA-1
chr7_2 exon 2029507 2029742 2029507 ID=Msa1043880-mRNA-1:exon:459;Parent=Msa1043880-mRNA-1
chr7_2 exon 2029904 2030029 2029904 ID=Msa1043880-mRNA-1:exon:458;Parent=Msa1043880-mRNA-1
chr7_2 exon 2030386 2030493 2030386 ID=Msa1043880-mRNA-1:exon:457;Parent=Msa1043880-mRNA-1
chr7_2 exon 2031107 2031170 2031107 ID=Msa1043880-mRNA-1:exon:456;Parent=Msa1043880-mRNA-1
chr7_2 exon 2031263 2031416 2031263 ID=Msa1043880-mRNA-1:exon:455;Parent=Msa1043880-mRNA-1
chr7_2 exon 2032813 2032984 2032813 ID=Msa1043880-mRNA-1:exon:454;Parent=Msa1043880-mRNA-1
chr7_2 exon 2033567 2033942 2033567 ID=Msa1043880-mRNA-1:exon:453;Parent=Msa1043880-mRNA-1
chr7_2 exon 2034315 2034476 2034315 ID=Msa1043880-mRNA-1:exon:452;Parent=Msa1043880-mRNA-1
chr7_2 five_prime_UTR 2034315 2034476 2034315 ID=Msa1043880-mRNA-1:five_prime_utr;Parent=Msa1043880-mRNA-1
chr7_2 five_prime_UTR 2033768 2033942 2033768 ID=Msa1043880-mRNA-1:five_prime_utr;Parent=Msa1043880-mRNA-1
chr7_2 CDS 2033567 2033767 2033567 ID=Msa1043880-mRNA-1:cds;Parent=Msa1043880-mRNA-1
chr7_2 CDS 2032813 2032984 2032813 ID=Msa1043880-mRNA-1:cds;Parent=Msa1043880-mRNA-1
chr7_2 CDS 2031263 2031416 2031263 ID=Msa1043880-mRNA-1:cds;Parent=Msa1043880-mRNA-1
chr7_2 CDS 2031107 2031170 2031107 ID=Msa1043880-mRNA-1:cds;Parent=Msa1043880-mRNA-1
chr7_2 CDS 2030386 2030493 2030386 ID=Msa1043880-mRNA-1:cds;Parent=Msa1043880-mRNA-1
chr7_2 CDS 2029904 2030029 2029904 ID=Msa1043880-mRNA-1:cds;Parent=Msa1043880-mRNA-1
chr7_2 CDS 2029507 2029742 2029507 ID=Msa1043880-mRNA-1:cds;Parent=Msa1043880-mRNA-1
chr7_2 CDS 2029221 2029420 2029221 ID=Msa1043880-mRNA-1:cds;Parent=Msa1043880-mRNA-1
chr7_2 CDS 2029103 2029131 2029103 ID=Msa1043880-mRNA-1:cds;Parent=Msa1043880-mRNA-1
chr7_2 three_prime_UTR 2028526 2029102 2028526 ID=Msa1043880-mRNA-1:three_prime_utr;Parent=Msa1043880-mRNA-1
Gene Sequence

>Msa1043880

ATGTCTGTGAGGAGTGAACACCATCAAACGGTTCCTCTTTCGGTTCTATTGAAGCGGGAGTTGATGAGCGAGAAAATTGAGAAACCTGAGATTGTTCATGGTCAAGCTGGACAAAGTAAGAAAGGAGAGGATTTTGCGTTGTTAAAGTCTGATTGTCAGAGGATGGTTGGTGATGGGGTCTATACATATTCTGTTTATGGGCTATTTGATGGACACAATGGATCTGCTGCTGCTATTTATTCTAAGGAGAATCTTCTAAATAATGTCGTAAGTGCAATTCCTCCAGATCTTAACAGAGATGAGTGGTTAGCAGCGTTGCCTAGAGCTTTGGTTGCTGGATTTGTAAAAACTGATAAAGATTTTGCAGAGAAAGGACAAAAATCAGGAACAACTGTCACCTTTGTGATTATAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGCGATTCCCGCTGCGTACTAGAATCTTCTGAAGGAGGGATTTATTACTTGTCAGCAGATCATAGGCTAGAAACAAATGAAGAAGAGAGGGTTCGTATCACTTCTAGCGGCGGTGAGGTTGGTCGTTTAAATACAGGGGGAGGTGCAGAGGTTGGTCCTTTGAGATGTTGGCCCGGTGGCTTGTGTCTTTCACGGTCTATTGGAGATATGGATATTGGTGAATTTGTTGTCCCTGTACCATATGTAAAACAAGTGAAGCTGTCTACCGCTGGAGGCCGGCTCGTTATCTGCAGTGATGGTGTTTGGGATGCTTTACCTGCAGAAGTGGCCCTTGATTGTTGTCGTGGCATGTCAGCAGAGGCTGCTGCACCACAGATTGTAAAAGAAGCTTTACAAGCAAAGGGACTTAGAGATGATACAACCTGTATTGTTGTCGATATATTACCTCAGGAGAAGCCACCTGCTCCTGTACCACATCAAAAGAAGCCAGTAAAAGGAATGCTCAAGGCCATGTTTCGTAAAAAGTCTTCGGAATCATCATCTTATATTGACAAAGAATACATGGAGCCAGATGTGGTAGTGGAGCTGTATGAGGAAGGCTCTGCTATGCTTTCAGAGAGGTTAGAAACAAAATATCCACTATGCAACATGTTCAAGTTGTTCATATGTGCAGTATGTCAAGTAGAAATAAAACCCGGAGAGGGTATTTCAGTACATGAGGGTGCAGAAAACCCTCAAAAAGTGCGCCCCTGGGATGGACCTTTCCTTTGCTTTAGTTGCCAGGAGAAGAAAGAAGCCATGGAAGGGAAAAGATCATTAGATAGACTTAGCAGCGGAAGTGACGAATGA
Protein sequence

>Msa1043880

MSVRSEHHQTVPLSVLLKRELMSEKIEKPEIVHGQAGQSKKGEDFALLKSDCQRMVGDGVYTYSVYGLFDGHNGSAAAIYSKENLLNNVVSAIPPDLNRDEWLAALPRALVAGFVKTDKDFAEKGQKSGTTVTFVIIEGWVVTVASVGDSRCVLESSEGGIYYLSADHRLETNEEERVRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDIGEFVVPVPYVKQVKLSTAGGRLVICSDGVWDALPAEVALDCCRGMSAEAAAPQIVKEALQAKGLRDDTTCIVVDILPQEKPPAPVPHQKKPVKGMLKAMFRKKSSESSSYIDKEYMEPDVVVELYEEGSAMLSERLETKYPLCNMFKLFICAVCQVEIKPGEGISVHEGAENPQKVRPWDGPFLCFSCQEKKEAMEGKRSLDRLSSGSDE*