Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337100 | XP_013451106.2 | 95.364 | 151 | 7 | 0 | 1 | 151 | 4 | 154 | 2.10e-104 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337100 | sp|P24397|HY6H_HYONI | 40.000 | 155 | 81 | 6 | 5 | 151 | 4 | 154 | 2.03e-24 | 99.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337100 | A0A396HAK2 | 95.364 | 151 | 7 | 0 | 1 | 151 | 4 | 154 | 1.00e-104 | 311 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0976400 | Msa1337100 | 0.802046 | 6.754739e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337100 | MtrunA17_Chr6g0455481 | 95.364 | 151 | 7 | 0 | 1 | 151 | 4 | 154 | 1.93e-108 | 311 |
| Msa1337100 | MtrunA17_Chr7g0220011 | 65.563 | 151 | 51 | 1 | 1 | 151 | 1 | 150 | 1.96e-70 | 215 |
| Msa1337100 | MtrunA17_Chr7g0220001 | 60.265 | 151 | 59 | 1 | 1 | 151 | 3 | 152 | 6.05e-63 | 196 |
| Msa1337100 | MtrunA17_Chr7g0219991 | 56.209 | 153 | 64 | 2 | 1 | 151 | 1 | 152 | 6.20e-56 | 178 |
| Msa1337100 | MtrunA17_Chr1g0184151 | 44.156 | 154 | 81 | 3 | 1 | 151 | 1 | 152 | 1.02e-38 | 134 |
| Msa1337100 | MtrunA17_Chr1g0184161 | 43.506 | 154 | 82 | 3 | 1 | 151 | 1 | 152 | 4.60e-37 | 129 |
| Msa1337100 | MtrunA17_Chr1g0184101 | 43.791 | 153 | 80 | 4 | 3 | 151 | 2 | 152 | 1.51e-36 | 128 |
| Msa1337100 | MtrunA17_Chr1g0184121 | 44.079 | 152 | 80 | 3 | 3 | 151 | 2 | 151 | 1.78e-34 | 122 |
| Msa1337100 | MtrunA17_Chr1g0184111 | 42.105 | 152 | 83 | 3 | 3 | 151 | 2 | 151 | 2.65e-32 | 117 |
| Msa1337100 | MtrunA17_Chr8g0345831 | 30.464 | 151 | 99 | 3 | 5 | 151 | 7 | 155 | 2.27e-21 | 88.2 |
| Msa1337100 | MtrunA17_Chr3g0128001 | 31.126 | 151 | 101 | 2 | 1 | 151 | 1 | 148 | 2.61e-20 | 85.1 |
| Msa1337100 | MtrunA17_Chr1g0170641 | 31.915 | 141 | 91 | 2 | 14 | 151 | 22 | 160 | 1.48e-19 | 80.1 |
| Msa1337100 | MtrunA17_Chr7g0250511 | 34.266 | 143 | 87 | 3 | 14 | 151 | 23 | 163 | 1.94e-18 | 80.1 |
| Msa1337100 | MtrunA17_Chr3g0114871 | 31.788 | 151 | 100 | 3 | 3 | 151 | 5 | 154 | 3.59e-18 | 78.6 |
| Msa1337100 | MtrunA17_Chr5g0437181 | 33.333 | 156 | 89 | 5 | 4 | 149 | 13 | 163 | 3.85e-15 | 70.9 |
| Msa1337100 | MtrunA17_Chr3g0113641 | 32.258 | 155 | 90 | 6 | 4 | 148 | 14 | 163 | 1.46e-14 | 69.3 |
| Msa1337100 | MtrunA17_Chr5g0405411 | 29.221 | 154 | 99 | 4 | 4 | 151 | 5 | 154 | 1.93e-14 | 68.9 |
| Msa1337100 | MtrunA17_Chr1g0179801 | 29.787 | 141 | 89 | 3 | 16 | 148 | 38 | 176 | 3.75e-14 | 68.2 |
| Msa1337100 | MtrunA17_Chr3g0114861 | 27.333 | 150 | 106 | 3 | 3 | 151 | 4 | 151 | 4.42e-14 | 67.8 |
| Msa1337100 | MtrunA17_Chr2g0311641 | 29.104 | 134 | 92 | 3 | 16 | 147 | 33 | 165 | 1.58e-13 | 64.3 |
| Msa1337100 | MtrunA17_Chr5g0424201 | 27.632 | 152 | 105 | 4 | 3 | 151 | 7 | 156 | 1.70e-13 | 66.2 |
| Msa1337100 | MtrunA17_Chr8g0371931 | 32.143 | 140 | 86 | 3 | 15 | 148 | 15 | 151 | 2.41e-13 | 65.9 |
| Msa1337100 | MtrunA17_Chr4g0006371 | 32.692 | 156 | 81 | 6 | 14 | 148 | 23 | 175 | 2.76e-13 | 65.9 |
| Msa1337100 | MtrunA17_Chr7g0265221 | 28.169 | 142 | 91 | 3 | 16 | 148 | 38 | 177 | 3.89e-13 | 65.5 |
| Msa1337100 | MtrunA17_Chr5g0412651 | 31.469 | 143 | 83 | 5 | 15 | 147 | 14 | 151 | 6.27e-13 | 64.7 |
| Msa1337100 | MtrunA17_Chr7g0242551 | 31.293 | 147 | 86 | 6 | 14 | 148 | 24 | 167 | 7.46e-13 | 64.7 |
| Msa1337100 | MtrunA17_Chr8g0371921 | 29.286 | 140 | 90 | 3 | 15 | 148 | 15 | 151 | 1.41e-12 | 63.9 |
| Msa1337100 | MtrunA17_Chr5g0424211 | 27.778 | 144 | 97 | 4 | 13 | 151 | 15 | 156 | 1.78e-12 | 63.5 |
| Msa1337100 | MtrunA17_Chr2g0311631 | 28.358 | 134 | 93 | 3 | 16 | 147 | 33 | 165 | 3.28e-12 | 62.8 |
| Msa1337100 | MtrunA17_Chr5g0426891 | 30.380 | 158 | 90 | 6 | 3 | 151 | 5 | 151 | 7.55e-12 | 61.6 |
| Msa1337100 | MtrunA17_Chr5g0412671 | 28.387 | 155 | 94 | 4 | 6 | 147 | 1 | 151 | 1.03e-11 | 61.2 |
| Msa1337100 | MtrunA17_Chr2g0311701 | 32.812 | 128 | 68 | 5 | 29 | 150 | 58 | 173 | 2.50e-11 | 60.5 |
| Msa1337100 | MtrunA17_Chr1g0161111 | 36.170 | 94 | 56 | 3 | 39 | 130 | 132 | 223 | 3.97e-11 | 59.7 |
| Msa1337100 | MtrunA17_Chr1g0161081 | 36.842 | 95 | 54 | 3 | 39 | 130 | 73 | 164 | 7.03e-11 | 58.9 |
| Msa1337100 | MtrunA17_Chr1g0162361 | 30.921 | 152 | 86 | 5 | 14 | 151 | 2 | 148 | 8.22e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337100 | AT5G24530.1 | 34.437 | 151 | 96 | 2 | 1 | 151 | 1 | 148 | 6.74e-24 | 95.1 |
| Msa1337100 | AT2G44800.1 | 31.875 | 160 | 98 | 4 | 1 | 151 | 9 | 166 | 3.09e-18 | 80.1 |
| Msa1337100 | AT5G08640.2 | 34.211 | 152 | 89 | 4 | 6 | 151 | 9 | 155 | 4.04e-18 | 79.7 |
| Msa1337100 | AT5G08640.1 | 34.211 | 152 | 89 | 4 | 6 | 151 | 9 | 155 | 4.04e-18 | 79.7 |
| Msa1337100 | AT4G10500.1 | 32.857 | 140 | 88 | 3 | 16 | 151 | 20 | 157 | 8.82e-18 | 78.6 |
| Msa1337100 | AT5G07480.1 | 31.206 | 141 | 87 | 4 | 16 | 151 | 24 | 159 | 1.37e-17 | 78.2 |
| Msa1337100 | AT5G63590.1 | 33.898 | 118 | 76 | 2 | 35 | 151 | 10 | 126 | 5.79e-16 | 73.2 |
| Msa1337100 | AT3G60290.1 | 33.803 | 142 | 86 | 4 | 16 | 151 | 27 | 166 | 1.24e-15 | 72.8 |
| Msa1337100 | AT4G10490.1 | 31.126 | 151 | 98 | 3 | 5 | 151 | 7 | 155 | 1.81e-15 | 72.4 |
| Msa1337100 | AT3G51240.1 | 31.206 | 141 | 88 | 3 | 14 | 148 | 13 | 150 | 1.22e-14 | 70.1 |
| Msa1337100 | AT5G63600.1 | 29.577 | 142 | 89 | 4 | 11 | 151 | 8 | 139 | 1.56e-14 | 69.7 |
| Msa1337100 | AT5G63580.2 | 32.479 | 117 | 75 | 3 | 36 | 151 | 16 | 129 | 1.60e-14 | 68.6 |
| Msa1337100 | AT5G63580.1 | 32.479 | 117 | 75 | 3 | 36 | 151 | 16 | 129 | 1.75e-14 | 68.6 |
| Msa1337100 | AT5G63600.2 | 29.577 | 142 | 89 | 4 | 11 | 151 | 8 | 139 | 1.75e-14 | 69.3 |
| Msa1337100 | AT3G13610.1 | 30.303 | 132 | 90 | 2 | 15 | 145 | 37 | 167 | 8.61e-14 | 67.8 |
| Msa1337100 | AT3G55970.2 | 34.395 | 157 | 84 | 6 | 6 | 148 | 14 | 165 | 1.20e-13 | 67.0 |
| Msa1337100 | AT5G63595.1 | 32.308 | 130 | 78 | 5 | 23 | 151 | 11 | 131 | 1.21e-13 | 66.6 |
| Msa1337100 | AT3G12900.1 | 35.294 | 136 | 84 | 2 | 14 | 146 | 31 | 165 | 1.25e-13 | 67.0 |
| Msa1337100 | AT3G55970.1 | 34.395 | 157 | 84 | 6 | 6 | 148 | 14 | 165 | 1.64e-13 | 67.0 |
| Msa1337100 | AT1G06640.3 | 38.000 | 100 | 54 | 2 | 37 | 130 | 62 | 159 | 3.06e-13 | 65.5 |
| Msa1337100 | AT1G06640.2 | 37.615 | 109 | 57 | 3 | 37 | 136 | 62 | 168 | 3.11e-13 | 65.9 |
| Msa1337100 | AT1G06640.1 | 38.000 | 100 | 54 | 2 | 37 | 130 | 62 | 159 | 3.33e-13 | 65.9 |
| Msa1337100 | AT1G55290.1 | 30.303 | 132 | 89 | 2 | 16 | 145 | 37 | 167 | 7.41e-13 | 65.1 |
| Msa1337100 | AT2G36690.2 | 29.851 | 134 | 88 | 3 | 22 | 151 | 43 | 174 | 2.90e-12 | 63.2 |
| Msa1337100 | AT2G36690.1 | 29.851 | 134 | 88 | 3 | 22 | 151 | 43 | 174 | 2.90e-12 | 63.2 |
| Msa1337100 | AT5G43935.1 | 30.769 | 117 | 76 | 3 | 36 | 151 | 16 | 128 | 3.48e-12 | 62.8 |
| Msa1337100 | AT5G05600.2 | 31.034 | 145 | 87 | 5 | 14 | 149 | 36 | 176 | 7.48e-12 | 62.0 |
| Msa1337100 | AT5G05600.1 | 31.034 | 145 | 87 | 5 | 14 | 149 | 36 | 176 | 1.05e-11 | 61.6 |
| Msa1337100 | AT1G06645.1 | 34.259 | 108 | 59 | 3 | 37 | 136 | 75 | 178 | 3.19e-11 | 60.5 |
| Msa1337100 | AT1G06620.2 | 33.094 | 139 | 74 | 6 | 14 | 139 | 36 | 168 | 4.68e-11 | 59.7 |
| Msa1337100 | AT1G06620.1 | 33.094 | 139 | 74 | 6 | 14 | 139 | 36 | 168 | 5.86e-11 | 59.7 |
Find 44 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTAATTTACCCGTATTT+AGG | 0.200634 | tig0001375:-41540 | None:intergenic |
| CTGGAGAATTCATGGAGTTT+TGG | 0.201882 | tig0001375:+41505 | Msa1337100:CDS |
| AATATTGAACAGCATCTATT+TGG | 0.241718 | tig0001375:-41449 | None:intergenic |
| TGGAGTTTCCAAGGATTTAA+TGG | 0.247095 | tig0001375:+41308 | Msa1337100:CDS |
| AGCTTTCAAAATTTGCATTA+TGG | 0.258860 | tig0001375:-40374 | None:intergenic |
| TTGAAAGCTTCCGAAGAATA+TGG | 0.295171 | tig0001375:+40388 | Msa1337100:CDS |
| AAATAGATGCTGTTCAATAT+TGG | 0.342734 | tig0001375:+41451 | Msa1337100:CDS |
| ACAATACCCTTGATTGATCT+TGG | 0.351764 | tig0001375:+40331 | Msa1337100:CDS |
| AGCTTACAATTAATTCCATT+TGG | 0.356869 | tig0001375:-41405 | None:intergenic |
| TCCTCCCTCTGGAGAATTCA+TGG | 0.359193 | tig0001375:+41497 | Msa1337100:CDS |
| GGCTTCATCCATTAAATCCT+TGG | 0.384348 | tig0001375:-41316 | None:intergenic |
| AAGGGTATTGTCTTACTTGA+AGG | 0.401607 | tig0001375:-40319 | None:intergenic |
| GAACTCTTTGAAAATATTGA+AGG | 0.401853 | tig0001375:-41337 | None:intergenic |
| GAAGGGTTCGTGACCTTACC+AGG | 0.468801 | tig0001375:-40301 | None:intergenic |
| CCTCAGAAACCACCTAAATA+CGG | 0.472224 | tig0001375:+41528 | Msa1337100:CDS |
| ATGTCCTCCAAGATCAATCA+AGG | 0.496046 | tig0001375:-40338 | None:intergenic |
| AGGGTATTGTCTTACTTGAA+GGG | 0.520674 | tig0001375:-40318 | None:intergenic |
| ACACACCCTTGTCCTCCCTC+TGG | 0.521134 | tig0001375:+41486 | Msa1337100:CDS |
| TTTCCTTTGGAGGCATGGCA+TGG | 0.523508 | tig0001375:-41359 | None:intergenic |
| GAATGCTCTAAAGATCCAAA+TGG | 0.524250 | tig0001375:+41390 | Msa1337100:CDS |
| AACAAAGGCTTATCTCAAGT+TGG | 0.528594 | tig0001375:+40224 | Msa1337100:CDS |
| GATCAACCATGGAGTTTCCA+AGG | 0.539912 | tig0001375:+41299 | Msa1337100:CDS |
| AATTCTCCAGAGGGAGGACA+AGG | 0.540964 | tig0001375:-41492 | None:intergenic |
| ACTTGAGTGTAGACCTGGTA+AGG | 0.547756 | tig0001375:+40288 | Msa1337100:CDS |
| CCGTATTTAGGTGGTTTCTG+AGG | 0.549244 | tig0001375:-41528 | None:intergenic |
| CTCAGAAACCACCTAAATAC+GGG | 0.558694 | tig0001375:+41529 | Msa1337100:CDS |
| TTAAATCCTTGGAAACTCCA+TGG | 0.561347 | tig0001375:-41305 | None:intergenic |
| ATACCCTTGATTGATCTTGG+AGG | 0.563246 | tig0001375:+40334 | Msa1337100:CDS |
| TTAATTTACCCGTATTTAGG+TGG | 0.584318 | tig0001375:-41537 | None:intergenic |
| ATGAAATAGGTGATCAACCA+TGG | 0.586511 | tig0001375:+41288 | Msa1337100:intron |
| TCAAGTGGTTGCACAAAGGA+AGG | 0.591490 | tig0001375:-40271 | None:intergenic |
| GTTCCATGCCATGCCTCCAA+AGG | 0.593751 | tig0001375:+41356 | Msa1337100:CDS |
| AGATGCTGTTCAATATTGGA+AGG | 0.600937 | tig0001375:+41455 | Msa1337100:CDS |
| AACTCCATGAATTCTCCAGA+GGG | 0.617098 | tig0001375:-41501 | None:intergenic |
| CAACCACTTGAGTGTAGACC+TGG | 0.618834 | tig0001375:+40283 | Msa1337100:CDS |
| AGTGGTTGCACAAAGGAAGG+TGG | 0.626242 | tig0001375:-40268 | None:intergenic |
| TTATGGAAACAATGGAACAA+AGG | 0.638230 | tig0001375:+40209 | None:intergenic |
| TTACCAGGTCTACACTCAAG+TGG | 0.642924 | tig0001375:-40286 | None:intergenic |
| CACAAAGGAAGGTGGAACTG+AGG | 0.656514 | tig0001375:-40260 | None:intergenic |
| TCCATGAATTCTCCAGAGGG+AGG | 0.667889 | tig0001375:-41498 | None:intergenic |
| TGTCCTCCAAGATCAATCAA+GGG | 0.676722 | tig0001375:-40337 | None:intergenic |
| AAACTCCATGAATTCTCCAG+AGG | 0.678023 | tig0001375:-41502 | None:intergenic |
| ACACTCAAGTGGTTGCACAA+AGG | 0.680804 | tig0001375:-40275 | None:intergenic |
| ATTCTCCAGAGGGAGGACAA+GGG | 0.726732 | tig0001375:-41491 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTTATTAACTTAAAAAA+TGG | + | tig0001375:40637-40656 | Msa1337100:intron | 10.0% |
| !! | TTCTTTATTAACTTAAAAAA+TGG | + | tig0001375:40637-40656 | Msa1337100:intron | 10.0% |
| !!! | GACTTGAAAATTTTATATTA+TGG | + | tig0001375:40681-40700 | Msa1337100:intron | 15.0% |
| !! | TTAATATTAATCTTTCTTCT+GGG | - | tig0001375:40941-40960 | None:intergenic | 15.0% |
| !! | ATTAATATTAATCTTTCTTC+TGG | - | tig0001375:40942-40961 | None:intergenic | 15.0% |
| !! | CAAAAGAAATATATTGAAAA+AGG | + | tig0001375:40991-41010 | Msa1337100:intron | 15.0% |
| !! | AAACTAAAAAACTATGAAAT+AGG | + | tig0001375:41275-41294 | Msa1337100:intron | 15.0% |
| !!! | GACTTGAAAATTTTATATTA+TGG | + | tig0001375:40681-40700 | Msa1337100:intron | 15.0% |
| !! | TTAATATTAATCTTTCTTCT+GGG | - | tig0001375:40941-40960 | None:intergenic | 15.0% |
| !! | ATTAATATTAATCTTTCTTC+TGG | - | tig0001375:40942-40961 | None:intergenic | 15.0% |
| !! | CAAAAGAAATATATTGAAAA+AGG | + | tig0001375:40991-41010 | Msa1337100:intron | 15.0% |
| !! | AAACTAAAAAACTATGAAAT+AGG | + | tig0001375:41275-41294 | Msa1337100:intron | 15.0% |
| !! | TATATAATTCCTCTTGAATA+AGG | + | tig0001375:40477-40496 | Msa1337100:intron | 20.0% |
| !! | TCAAATCAAAATTTGTATGA+TGG | + | tig0001375:40568-40587 | Msa1337100:intron | 20.0% |
| !!! | CATGCTTAAACAATAATTTT+AGG | - | tig0001375:41244-41263 | None:intergenic | 20.0% |
| !! | TATATAATTCCTCTTGAATA+AGG | + | tig0001375:40477-40496 | Msa1337100:intron | 20.0% |
| !! | TCAAATCAAAATTTGTATGA+TGG | + | tig0001375:40568-40587 | Msa1337100:intron | 20.0% |
| !!! | CATGCTTAAACAATAATTTT+AGG | - | tig0001375:41244-41263 | None:intergenic | 20.0% |
| ! | AGCTTTCAAAATTTGCATTA+TGG | - | tig0001375:40377-40396 | None:intergenic | 25.0% |
| ! | CTGAAAAAAACCATATTCTT+CGG | - | tig0001375:40401-40420 | None:intergenic | 25.0% |
| ! | AGAATATTCGTAGATATTCA+TGG | + | tig0001375:40526-40545 | Msa1337100:intron | 25.0% |
| ! | GATCAAATCAAAATTTGTCT+TGG | + | tig0001375:40659-40678 | Msa1337100:intron | 25.0% |
| ! | TCCTTAAGAAATTTCTCATT+TGG | - | tig0001375:40782-40801 | None:intergenic | 25.0% |
| ! | ATACTGGTGAATTGATAAAA+AGG | - | tig0001375:40848-40867 | None:intergenic | 25.0% |
| !! | AAAAGATCATCTTTTTATCG+TGG | + | tig0001375:41078-41097 | Msa1337100:intron | 25.0% |
| !! | GAACTCTTTGAAAATATTGA+AGG | - | tig0001375:41340-41359 | None:intergenic | 25.0% |
| ! | AGCTTACAATTAATTCCATT+TGG | - | tig0001375:41408-41427 | None:intergenic | 25.0% |
| ! | AATATTGAACAGCATCTATT+TGG | - | tig0001375:41452-41471 | None:intergenic | 25.0% |
| ! | AAATAGATGCTGTTCAATAT+TGG | + | tig0001375:41451-41470 | Msa1337100:CDS | 25.0% |
| ! | AGCTTTCAAAATTTGCATTA+TGG | - | tig0001375:40377-40396 | None:intergenic | 25.0% |
| ! | CTGAAAAAAACCATATTCTT+CGG | - | tig0001375:40401-40420 | None:intergenic | 25.0% |
| ! | AGAATATTCGTAGATATTCA+TGG | + | tig0001375:40526-40545 | Msa1337100:intron | 25.0% |
| ! | GATCAAATCAAAATTTGTCT+TGG | + | tig0001375:40659-40678 | Msa1337100:intron | 25.0% |
| ! | TCCTTAAGAAATTTCTCATT+TGG | - | tig0001375:40782-40801 | None:intergenic | 25.0% |
| ! | ATACTGGTGAATTGATAAAA+AGG | - | tig0001375:40848-40867 | None:intergenic | 25.0% |
| !! | AAAAGATCATCTTTTTATCG+TGG | + | tig0001375:41078-41097 | Msa1337100:intron | 25.0% |
| !! | GAACTCTTTGAAAATATTGA+AGG | - | tig0001375:41340-41359 | None:intergenic | 25.0% |
| ! | AGCTTACAATTAATTCCATT+TGG | - | tig0001375:41408-41427 | None:intergenic | 25.0% |
| ! | AATATTGAACAGCATCTATT+TGG | - | tig0001375:41452-41471 | None:intergenic | 25.0% |
| ! | AAATAGATGCTGTTCAATAT+TGG | + | tig0001375:41451-41470 | Msa1337100:CDS | 25.0% |
| !!! | CGAAGAATATGGTTTTTTTC+AGG | + | tig0001375:40399-40418 | Msa1337100:CDS | 30.0% |
| ACTTCATTTCCTTATTCAAG+AGG | - | tig0001375:40489-40508 | None:intergenic | 30.0% | |
| TCTTCATAATCTTGAATGCT+GGG | - | tig0001375:40715-40734 | None:intergenic | 30.0% | |
| TTCTTCATAATCTTGAATGC+TGG | - | tig0001375:40716-40735 | None:intergenic | 30.0% | |
| TAAGAAATTTCTCATTTGGC+AGG | - | tig0001375:40778-40797 | None:intergenic | 30.0% | |
| GCCAAATGAGAAATTTCTTA+AGG | + | tig0001375:40778-40797 | Msa1337100:intron | 30.0% | |
| !! | GTTATTTCTCAAATTGAGCT+TGG | - | tig0001375:40826-40845 | None:intergenic | 30.0% |
| ! | TCAATTCACCAGTATTGAAA+AGG | + | tig0001375:40853-40872 | Msa1337100:intron | 30.0% |
| ! | CAATTCACCAGTATTGAAAA+GGG | + | tig0001375:40854-40873 | Msa1337100:intron | 30.0% |
| ! | CATCTTGATCTTTTATGCTT+AGG | + | tig0001375:41034-41053 | Msa1337100:intron | 30.0% |
| ! | TCATCTTTTTATCGTGGTAT+AGG | + | tig0001375:41084-41103 | Msa1337100:intron | 30.0% |
| ! | CATTCACTTATCTTTTCCTT+TGG | - | tig0001375:41375-41394 | None:intergenic | 30.0% |
| !!! | CGAAGAATATGGTTTTTTTC+AGG | + | tig0001375:40399-40418 | Msa1337100:CDS | 30.0% |
| ACTTCATTTCCTTATTCAAG+AGG | - | tig0001375:40489-40508 | None:intergenic | 30.0% | |
| TCTTCATAATCTTGAATGCT+GGG | - | tig0001375:40715-40734 | None:intergenic | 30.0% | |
| TTCTTCATAATCTTGAATGC+TGG | - | tig0001375:40716-40735 | None:intergenic | 30.0% | |
| TAAGAAATTTCTCATTTGGC+AGG | - | tig0001375:40778-40797 | None:intergenic | 30.0% | |
| GCCAAATGAGAAATTTCTTA+AGG | + | tig0001375:40778-40797 | Msa1337100:intron | 30.0% | |
| !! | GTTATTTCTCAAATTGAGCT+TGG | - | tig0001375:40826-40845 | None:intergenic | 30.0% |
| ! | TCAATTCACCAGTATTGAAA+AGG | + | tig0001375:40853-40872 | Msa1337100:intron | 30.0% |
| ! | CAATTCACCAGTATTGAAAA+GGG | + | tig0001375:40854-40873 | Msa1337100:intron | 30.0% |
| ! | CATCTTGATCTTTTATGCTT+AGG | + | tig0001375:41034-41053 | Msa1337100:intron | 30.0% |
| ! | TCATCTTTTTATCGTGGTAT+AGG | + | tig0001375:41084-41103 | Msa1337100:intron | 30.0% |
| ! | CATTCACTTATCTTTTCCTT+TGG | - | tig0001375:41375-41394 | None:intergenic | 30.0% |
| AACAAAGGCTTATCTCAAGT+TGG | + | tig0001375:40224-40243 | Msa1337100:CDS | 35.0% | |
| !! | AGGGTATTGTCTTACTTGAA+GGG | - | tig0001375:40321-40340 | None:intergenic | 35.0% |
| !! | AAGGGTATTGTCTTACTTGA+AGG | - | tig0001375:40322-40341 | None:intergenic | 35.0% |
| ACAATACCCTTGATTGATCT+TGG | + | tig0001375:40331-40350 | Msa1337100:CDS | 35.0% | |
| TTGAAAGCTTCCGAAGAATA+TGG | + | tig0001375:40388-40407 | Msa1337100:CDS | 35.0% | |
| CTTCATAATCTTGAATGCTG+GGG | - | tig0001375:40714-40733 | None:intergenic | 35.0% | |
| TTCTCAAATTGAGCTTGGAA+AGG | - | tig0001375:40821-40840 | None:intergenic | 35.0% | |
| !! | ACCAGTATTGAAAAGGGTTT+TGG | + | tig0001375:40860-40879 | Msa1337100:intron | 35.0% |
| !! | CCAGTATTGAAAAGGGTTTT+GGG | + | tig0001375:40861-40880 | Msa1337100:intron | 35.0% |
| !! | CAGTATTGAAAAGGGTTTTG+GGG | + | tig0001375:40862-40881 | Msa1337100:intron | 35.0% |
| TTTCTTCTGGGTTTGAATTC+AGG | - | tig0001375:40929-40948 | None:intergenic | 35.0% | |
| ! | TTTGATCTCTTTGACTTTCG+AGG | - | tig0001375:41171-41190 | None:intergenic | 35.0% |
| ATGAAATAGGTGATCAACCA+TGG | + | tig0001375:41288-41307 | Msa1337100:intron | 35.0% | |
| TTAAATCCTTGGAAACTCCA+TGG | - | tig0001375:41308-41327 | None:intergenic | 35.0% | |
| TGGAGTTTCCAAGGATTTAA+TGG | + | tig0001375:41308-41327 | Msa1337100:CDS | 35.0% | |
| ! | TCACTTATCTTTTCCTTTGG+AGG | - | tig0001375:41372-41391 | None:intergenic | 35.0% |
| !! | GAATGCTCTAAAGATCCAAA+TGG | + | tig0001375:41390-41409 | Msa1337100:CDS | 35.0% |
| AGATGCTGTTCAATATTGGA+AGG | + | tig0001375:41455-41474 | Msa1337100:CDS | 35.0% | |
| AACAAAGGCTTATCTCAAGT+TGG | + | tig0001375:40224-40243 | Msa1337100:CDS | 35.0% | |
| !! | AGGGTATTGTCTTACTTGAA+GGG | - | tig0001375:40321-40340 | None:intergenic | 35.0% |
| !! | AAGGGTATTGTCTTACTTGA+AGG | - | tig0001375:40322-40341 | None:intergenic | 35.0% |
| ACAATACCCTTGATTGATCT+TGG | + | tig0001375:40331-40350 | Msa1337100:CDS | 35.0% | |
| TTGAAAGCTTCCGAAGAATA+TGG | + | tig0001375:40388-40407 | Msa1337100:CDS | 35.0% | |
| CTTCATAATCTTGAATGCTG+GGG | - | tig0001375:40714-40733 | None:intergenic | 35.0% | |
| TTCTCAAATTGAGCTTGGAA+AGG | - | tig0001375:40821-40840 | None:intergenic | 35.0% | |
| !! | ACCAGTATTGAAAAGGGTTT+TGG | + | tig0001375:40860-40879 | Msa1337100:intron | 35.0% |
| !! | CCAGTATTGAAAAGGGTTTT+GGG | + | tig0001375:40861-40880 | Msa1337100:intron | 35.0% |
| !! | CAGTATTGAAAAGGGTTTTG+GGG | + | tig0001375:40862-40881 | Msa1337100:intron | 35.0% |
| TTTCTTCTGGGTTTGAATTC+AGG | - | tig0001375:40929-40948 | None:intergenic | 35.0% | |
| ! | TTTGATCTCTTTGACTTTCG+AGG | - | tig0001375:41171-41190 | None:intergenic | 35.0% |
| ATGAAATAGGTGATCAACCA+TGG | + | tig0001375:41288-41307 | Msa1337100:intron | 35.0% | |
| TTAAATCCTTGGAAACTCCA+TGG | - | tig0001375:41308-41327 | None:intergenic | 35.0% | |
| TGGAGTTTCCAAGGATTTAA+TGG | + | tig0001375:41308-41327 | Msa1337100:CDS | 35.0% | |
| ! | TCACTTATCTTTTCCTTTGG+AGG | - | tig0001375:41372-41391 | None:intergenic | 35.0% |
| !! | GAATGCTCTAAAGATCCAAA+TGG | + | tig0001375:41390-41409 | Msa1337100:CDS | 35.0% |
| AGATGCTGTTCAATATTGGA+AGG | + | tig0001375:41455-41474 | Msa1337100:CDS | 35.0% | |
| ATACCCTTGATTGATCTTGG+AGG | + | tig0001375:40334-40353 | Msa1337100:CDS | 40.0% | |
| TGTCCTCCAAGATCAATCAA+GGG | - | tig0001375:40340-40359 | None:intergenic | 40.0% | |
| ATGTCCTCCAAGATCAATCA+AGG | - | tig0001375:40341-40360 | None:intergenic | 40.0% | |
| ! | CCCAAAACCCTTTTCAATAC+TGG | - | tig0001375:40864-40883 | None:intergenic | 40.0% |
| !!! | TTGAAAAGGGTTTTGGGGTT+AGG | + | tig0001375:40867-40886 | Msa1337100:intron | 40.0% |
| !!! | TGAAAAGGGTTTTGGGGTTA+GGG | + | tig0001375:40868-40887 | Msa1337100:intron | 40.0% |
| TATAGGAATCAAGCTCTCGA+GGG | + | tig0001375:41101-41120 | Msa1337100:intron | 40.0% | |
| GGCTTCATCCATTAAATCCT+TGG | - | tig0001375:41319-41338 | None:intergenic | 40.0% | |
| !! | TATCTTTTCCTTTGGAGGCA+TGG | - | tig0001375:41367-41386 | None:intergenic | 40.0% |
| AACTCCATGAATTCTCCAGA+GGG | - | tig0001375:41504-41523 | None:intergenic | 40.0% | |
| AAACTCCATGAATTCTCCAG+AGG | - | tig0001375:41505-41524 | None:intergenic | 40.0% | |
| ! | CTGGAGAATTCATGGAGTTT+TGG | + | tig0001375:41505-41524 | Msa1337100:CDS | 40.0% |
| ATACCCTTGATTGATCTTGG+AGG | + | tig0001375:40334-40353 | Msa1337100:CDS | 40.0% | |
| TGTCCTCCAAGATCAATCAA+GGG | - | tig0001375:40340-40359 | None:intergenic | 40.0% | |
| ATGTCCTCCAAGATCAATCA+AGG | - | tig0001375:40341-40360 | None:intergenic | 40.0% | |
| ! | CCCAAAACCCTTTTCAATAC+TGG | - | tig0001375:40864-40883 | None:intergenic | 40.0% |
| !!! | TTGAAAAGGGTTTTGGGGTT+AGG | + | tig0001375:40867-40886 | Msa1337100:intron | 40.0% |
| !!! | TGAAAAGGGTTTTGGGGTTA+GGG | + | tig0001375:40868-40887 | Msa1337100:intron | 40.0% |
| TATAGGAATCAAGCTCTCGA+GGG | + | tig0001375:41101-41120 | Msa1337100:intron | 40.0% | |
| GGCTTCATCCATTAAATCCT+TGG | - | tig0001375:41319-41338 | None:intergenic | 40.0% | |
| !! | TATCTTTTCCTTTGGAGGCA+TGG | - | tig0001375:41367-41386 | None:intergenic | 40.0% |
| AACTCCATGAATTCTCCAGA+GGG | - | tig0001375:41504-41523 | None:intergenic | 40.0% | |
| AAACTCCATGAATTCTCCAG+AGG | - | tig0001375:41505-41524 | None:intergenic | 40.0% | |
| ! | CTGGAGAATTCATGGAGTTT+TGG | + | tig0001375:41505-41524 | Msa1337100:CDS | 40.0% |
| TCAAGTGGTTGCACAAAGGA+AGG | - | tig0001375:40274-40293 | None:intergenic | 45.0% | |
| ACACTCAAGTGGTTGCACAA+AGG | - | tig0001375:40278-40297 | None:intergenic | 45.0% | |
| TTACCAGGTCTACACTCAAG+TGG | - | tig0001375:40289-40308 | None:intergenic | 45.0% | |
| ACTTGAGTGTAGACCTGGTA+AGG | + | tig0001375:40288-40307 | Msa1337100:CDS | 45.0% | |
| GTATAGGAATCAAGCTCTCG+AGG | + | tig0001375:41100-41119 | Msa1337100:intron | 45.0% | |
| GATCAACCATGGAGTTTCCA+AGG | + | tig0001375:41299-41318 | Msa1337100:CDS | 45.0% | |
| TCAAGTGGTTGCACAAAGGA+AGG | - | tig0001375:40274-40293 | None:intergenic | 45.0% | |
| ACACTCAAGTGGTTGCACAA+AGG | - | tig0001375:40278-40297 | None:intergenic | 45.0% | |
| TTACCAGGTCTACACTCAAG+TGG | - | tig0001375:40289-40308 | None:intergenic | 45.0% | |
| ACTTGAGTGTAGACCTGGTA+AGG | + | tig0001375:40288-40307 | Msa1337100:CDS | 45.0% | |
| GTATAGGAATCAAGCTCTCG+AGG | + | tig0001375:41100-41119 | Msa1337100:intron | 45.0% | |
| GATCAACCATGGAGTTTCCA+AGG | + | tig0001375:41299-41318 | Msa1337100:CDS | 45.0% | |
| CACAAAGGAAGGTGGAACTG+AGG | - | tig0001375:40263-40282 | None:intergenic | 50.0% | |
| AGTGGTTGCACAAAGGAAGG+TGG | - | tig0001375:40271-40290 | None:intergenic | 50.0% | |
| CAACCACTTGAGTGTAGACC+TGG | + | tig0001375:40283-40302 | Msa1337100:CDS | 50.0% | |
| ! | TTTCCTTTGGAGGCATGGCA+TGG | - | tig0001375:41362-41381 | None:intergenic | 50.0% |
| ATTCTCCAGAGGGAGGACAA+GGG | - | tig0001375:41494-41513 | None:intergenic | 50.0% | |
| AATTCTCCAGAGGGAGGACA+AGG | - | tig0001375:41495-41514 | None:intergenic | 50.0% | |
| ! | TCCTCCCTCTGGAGAATTCA+TGG | + | tig0001375:41497-41516 | Msa1337100:CDS | 50.0% |
| TCCATGAATTCTCCAGAGGG+AGG | - | tig0001375:41501-41520 | None:intergenic | 50.0% | |
| CACAAAGGAAGGTGGAACTG+AGG | - | tig0001375:40263-40282 | None:intergenic | 50.0% | |
| AGTGGTTGCACAAAGGAAGG+TGG | - | tig0001375:40271-40290 | None:intergenic | 50.0% | |
| CAACCACTTGAGTGTAGACC+TGG | + | tig0001375:40283-40302 | Msa1337100:CDS | 50.0% | |
| ! | TTTCCTTTGGAGGCATGGCA+TGG | - | tig0001375:41362-41381 | None:intergenic | 50.0% |
| ATTCTCCAGAGGGAGGACAA+GGG | - | tig0001375:41494-41513 | None:intergenic | 50.0% | |
| AATTCTCCAGAGGGAGGACA+AGG | - | tig0001375:41495-41514 | None:intergenic | 50.0% | |
| ! | TCCTCCCTCTGGAGAATTCA+TGG | + | tig0001375:41497-41516 | Msa1337100:CDS | 50.0% |
| TCCATGAATTCTCCAGAGGG+AGG | - | tig0001375:41501-41520 | None:intergenic | 50.0% | |
| GAAGGGTTCGTGACCTTACC+AGG | - | tig0001375:40304-40323 | None:intergenic | 55.0% | |
| GTTCCATGCCATGCCTCCAA+AGG | + | tig0001375:41356-41375 | Msa1337100:CDS | 55.0% | |
| GAAGGGTTCGTGACCTTACC+AGG | - | tig0001375:40304-40323 | None:intergenic | 55.0% | |
| GTTCCATGCCATGCCTCCAA+AGG | + | tig0001375:41356-41375 | Msa1337100:CDS | 55.0% | |
| ACACACCCTTGTCCTCCCTC+TGG | + | tig0001375:41486-41505 | Msa1337100:CDS | 60.0% | |
| ACACACCCTTGTCCTCCCTC+TGG | + | tig0001375:41486-41505 | Msa1337100:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0001375 | gene | 40220 | 41548 | 40220 | ID=Msa1337100;Name=Msa1337100 |
| tig0001375 | mRNA | 40220 | 41548 | 40220 | ID=Msa1337100-mRNA-1;Parent=Msa1337100;Name=Msa1337100-mRNA-1;_AED=0.00;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|151 |
| tig0001375 | exon | 40220 | 40420 | 40220 | ID=Msa1337100-mRNA-1:exon:986;Parent=Msa1337100-mRNA-1 |
| tig0001375 | exon | 41297 | 41548 | 41297 | ID=Msa1337100-mRNA-1:exon:987;Parent=Msa1337100-mRNA-1 |
| tig0001375 | CDS | 40220 | 40420 | 40220 | ID=Msa1337100-mRNA-1:cds;Parent=Msa1337100-mRNA-1 |
| tig0001375 | CDS | 41297 | 41548 | 41297 | ID=Msa1337100-mRNA-1:cds;Parent=Msa1337100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
