AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1337650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337650 MtrunA17_Chr4g0072861 99.451 182 1 0 1 182 1 182 3.88e-134 372
Msa1337650 MtrunA17_Chr6g0450081 63.128 179 66 0 1 179 1 179 7.27e-85 248
Msa1337650 MtrunA17_Chr7g0270301 63.128 179 66 0 1 179 1 179 1.08e-84 247
Msa1337650 MtrunA17_Chr5g0413451 63.277 177 65 0 1 177 1 177 2.48e-84 246
Msa1337650 MtrunA17_Chr5g0413441 63.277 177 65 0 1 177 1 177 2.48e-84 246
Msa1337650 MtrunA17_Chr1g0194261 63.277 177 65 0 1 177 1 177 4.58e-84 246
Msa1337650 MtrunA17_Chr5g0401761 56.425 179 78 0 1 179 1 179 1.72e-76 226
Msa1337650 MtrunA17_Chr5g0395631 58.427 178 74 0 1 178 1 178 2.71e-75 224
Msa1337650 MtrunA17_Chr4g0039591 56.742 178 77 0 1 178 1 178 2.32e-71 214
Msa1337650 MtrunA17_Chr5g0395641 53.333 180 82 1 1 178 1 180 6.61e-69 207
Msa1337650 MtrunA17_Chr1g0188111 48.851 174 89 0 1 174 1 174 4.69e-61 187
Msa1337650 MtrunA17_Chr8g0373271 48.466 163 81 3 19 179 18 179 9.51e-48 154
Msa1337650 MtrunA17_Chr5g0401071 36.813 182 112 2 1 179 1 182 1.29e-35 122
Msa1337650 MtrunA17_Chr2g0287721 35.135 185 107 2 4 178 4 185 4.36e-35 122
Msa1337650 MtrunA17_Chr5g0434561 34.940 166 107 1 9 173 11 176 4.34e-30 108
Msa1337650 MtrunA17_Chr4g0012371 34.783 161 104 1 20 179 3 163 7.37e-30 107
Msa1337650 MtrunA17_Chr5g0395651 61.538 78 28 1 1 76 1 78 3.92e-29 103
Msa1337650 MtrunA17_Chr2g0294701 34.659 176 103 1 15 178 18 193 4.59e-29 106
Msa1337650 MtrunA17_Chr7g0271761 33.523 176 105 1 15 178 18 193 1.30e-28 105
Msa1337650 MtrunA17_Chr4g0068171 34.659 176 103 1 15 178 18 193 1.47e-27 102
Msa1337650 MtrunA17_Chr5g0395671 55.319 47 21 0 132 178 44 90 5.91e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337650 AT2G24765.1 91.758 182 15 0 1 182 1 182 6.32e-127 354
Msa1337650 AT2G24765.2 92.969 128 9 0 1 128 1 128 2.44e-87 253
Msa1337650 AT5G14670.2 62.570 179 67 0 1 179 1 179 7.45e-84 245
Msa1337650 AT5G14670.3 62.570 179 67 0 1 179 1 179 7.45e-84 245
Msa1337650 AT1G10630.1 62.570 179 67 0 1 179 1 179 8.04e-84 245
Msa1337650 AT1G10630.2 62.570 179 67 0 1 179 1 179 8.04e-84 245
Msa1337650 AT5G14670.1 62.570 179 67 0 1 179 1 179 1.53e-83 245
Msa1337650 AT2G47170.2 62.570 179 67 0 1 179 1 179 2.25e-83 244
Msa1337650 AT2G47170.1 62.570 179 67 0 1 179 1 179 2.25e-83 244
Msa1337650 AT2G47170.3 62.570 179 67 0 1 179 1 179 2.25e-83 244
Msa1337650 AT1G23490.1 62.712 177 66 0 1 177 1 177 3.53e-83 244
Msa1337650 AT1G70490.2 62.712 177 66 0 1 177 1 177 3.53e-83 244
Msa1337650 AT1G70490.7 62.712 177 66 0 1 177 1 177 3.53e-83 244
Msa1337650 AT1G70490.4 62.712 177 66 0 1 177 1 177 3.53e-83 244
Msa1337650 AT1G70490.3 62.712 177 66 0 1 177 1 177 3.53e-83 244
Msa1337650 AT1G70490.1 62.712 177 66 0 1 177 1 177 3.53e-83 244
Msa1337650 AT1G70490.6 62.712 177 66 0 1 177 1 177 3.53e-83 244
Msa1337650 AT1G70490.5 62.712 177 66 0 1 177 1 177 3.53e-83 244
Msa1337650 AT3G62290.3 62.712 177 66 0 1 177 1 177 6.73e-83 243
Msa1337650 AT3G62290.1 62.712 177 66 0 1 177 1 177 6.73e-83 243
Msa1337650 AT3G62290.2 62.712 177 66 0 1 177 1 177 6.73e-83 243
Msa1337650 AT5G17060.2 56.180 178 78 0 1 178 1 178 1.76e-73 219
Msa1337650 AT5G17060.1 56.180 178 78 0 1 178 1 178 1.76e-73 219
Msa1337650 AT3G03120.1 56.742 178 77 0 1 178 1 178 2.98e-72 216
Msa1337650 AT2G15310.1 56.497 177 77 0 1 177 1 177 1.19e-68 208
Msa1337650 AT3G22950.1 48.851 174 89 0 1 174 1 174 4.86e-61 187
Msa1337650 AT3G22950.2 48.851 174 89 0 1 174 1 174 4.86e-61 187
Msa1337650 AT3G03120.2 57.692 130 55 0 1 130 1 130 2.49e-53 166
Msa1337650 AT2G18390.1 47.853 163 82 3 19 179 18 179 7.48e-47 152
Msa1337650 AT1G02430.1 35.676 185 105 5 1 173 1 183 1.16e-38 131
Msa1337650 AT1G02440.1 32.432 185 111 5 1 173 1 183 1.68e-35 123
Msa1337650 AT3G49870.1 35.714 182 114 2 1 179 1 182 2.96e-35 122
Msa1337650 AT5G67560.1 35.294 170 109 1 11 179 13 182 5.37e-34 119
Msa1337650 AT3G49870.2 36.478 159 100 1 22 179 5 163 5.96e-33 115
Msa1337650 AT5G52210.1 32.967 182 115 1 4 178 4 185 8.57e-33 116
Msa1337650 AT5G52210.2 32.967 182 115 1 4 178 4 185 8.57e-33 116
Msa1337650 AT3G49860.1 36.364 165 104 1 16 179 10 174 1.07e-32 115
Msa1337650 AT1G02430.2 34.161 161 96 4 1 153 1 159 4.17e-32 113
Msa1337650 AT5G37680.1 33.735 166 109 1 9 173 11 176 2.20e-29 107
Msa1337650 AT4G02080.1 34.091 176 104 1 15 178 18 193 1.14e-28 105
Msa1337650 AT1G56330.1 34.286 175 103 1 15 177 18 192 7.73e-28 103
Msa1337650 AT1G09180.1 34.659 176 103 1 15 178 18 193 8.52e-28 103
Msa1337650 AT3G62560.1 33.714 175 104 1 15 177 18 192 1.09e-27 103
Msa1337650 AT5G37680.2 35.156 128 83 0 46 173 2 129 1.26e-24 93.6
Msa1337650 AT1G02440.2 27.922 154 75 4 1 153 1 119 2.07e-20 82.4

Find 74 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATTATTGCTTGAGTATT+TGG 0.102072 tig0001526:-318961 None:intergenic
AAATTTCAAGTTTGGGATTT+AGG 0.151990 tig0001526:+316467 Msa1337650:CDS
TTTAAAACTTCTGCTATAAA+AGG 0.186926 tig0001526:+320380 Msa1337650:CDS
ACAACATTAAATTTCAAGTT+TGG 0.228412 tig0001526:+316459 Msa1337650:CDS
TTTCAGGAAGAAGAACTAAA+AGG 0.299609 tig0001526:+320033 Msa1337650:intron
GTGATGCGATTGAAGGATTA+AGG 0.301293 tig0001526:-315858 None:intergenic
TCAGGATTTGGATTTGGATT+TGG 0.302075 tig0001526:-315774 None:intergenic
CGATGATGAGAATCAGGATT+TGG 0.321141 tig0001526:-315786 None:intergenic
CTCTTTGATTATACTGAAAT+CGG 0.325196 tig0001526:-315919 None:intergenic
GGAGGAGTTCCATGCAATTC+TGG 0.326352 tig0001526:+319026 Msa1337650:CDS
CAACATTAAATTTCAAGTTT+GGG 0.328587 tig0001526:+316460 Msa1337650:CDS
TGAGAATCAGGATTTGGATT+TGG 0.329441 tig0001526:-315780 None:intergenic
TTGAACCCCATGTAGCAATA+AGG 0.356498 tig0001526:-321923 None:intergenic
GGAAAGTAACACCTCCAATA+TGG 0.374802 tig0001526:-318940 None:intergenic
GGAAGATAGAAGAATCGAAT+TGG 0.396487 tig0001526:-315826 None:intergenic
TTTAGATCGATTGGTGAATT+CGG 0.406570 tig0001526:+321630 Msa1337650:three_prime_UTR
ACGAAACGATGATGAGAATC+AGG 0.409319 tig0001526:-315792 None:intergenic
CTTCTCCACCTTTCAGTCAT+GGG 0.413160 tig0001526:-315738 None:intergenic
GATTAAAACATGAATGAATC+AGG 0.413699 tig0001526:-315964 None:intergenic
TAATCCCTCTGCTGCCGAAT+CGG 0.415016 tig0001526:+315988 Msa1337650:five_prime_UTR
TAGATATAATTTAGATCGAT+TGG 0.417779 tig0001526:+321621 Msa1337650:three_prime_UTR
TTGATTCAAGTGACACTGAT+AGG 0.424944 tig0001526:+318989 Msa1337650:CDS
TAGAAGAATCGAATTGGAAG+AGG 0.427878 tig0001526:-315820 None:intergenic
TTGAGCAATACACTCAAATC+TGG 0.428240 tig0001526:+321568 Msa1337650:CDS
GCGATTGAAGGATTAAGGTT+AGG 0.434583 tig0001526:-315853 None:intergenic
CTGATAGGCTTGTGATAGCT+AGG 0.436345 tig0001526:+319004 Msa1337650:CDS
TCTTCTCCACCTTTCAGTCA+TGG 0.447419 tig0001526:-315739 None:intergenic
GAAGGATTAAGGTTAGGTTT+CGG 0.454406 tig0001526:-315847 None:intergenic
TCTGCTGCCGAATCGGAAGA+TGG 0.472634 tig0001526:+315995 Msa1337650:exon
CAGGTGGGCAAACAAGTATC+AGG 0.480395 tig0001526:+317848 Msa1337650:intron
GTTTGTGTAATCGAGCTACA+TGG 0.483918 tig0001526:+321867 Msa1337650:three_prime_UTR
TGAATCAGGTGCAAACGATT+CGG 0.485702 tig0001526:-315950 None:intergenic
AGAAGAATCGAATTGGAAGA+GGG 0.487334 tig0001526:-315819 None:intergenic
ATGAAGAAGCATACATAGAA+TGG 0.499743 tig0001526:-316108 None:intergenic
GAAGCTCGAATTCTCGTTCT+CGG 0.503966 tig0001526:+316062 Msa1337650:CDS
ACTAATCCCATCTTCCGATT+CGG 0.506920 tig0001526:-316002 None:intergenic
CTGCTGCCGAATCGGAAGAT+GGG 0.515413 tig0001526:+315996 Msa1337650:exon
AAGCAGAAGCGAAGAGAGGA+AGG 0.520182 tig0001526:-315885 None:intergenic
GATTATTTGATACAGCGATC+GGG 0.525019 tig0001526:+316411 Msa1337650:intron
TTGTCCATAGGCCATATTGG+AGG 0.528609 tig0001526:+318929 Msa1337650:intron
TTTGTGTAATCGAGCTACAT+GGG 0.528801 tig0001526:+321868 Msa1337650:three_prime_UTR
CCGTCACTGCAGCATCATCA+AGG 0.530798 tig0001526:-320313 None:intergenic
CCTTGATGATGCTGCAGTGA+CGG 0.531460 tig0001526:+320313 Msa1337650:CDS
GATCGATTGGTGAATTCGGA+AGG 0.531645 tig0001526:+321634 Msa1337650:three_prime_UTR
TGACTGAAAGGTGGAGAAGA+GGG 0.535231 tig0001526:+315742 Msa1337650:five_prime_UTR
TCCATTATGCAGGATCTACC+AGG 0.537332 tig0001526:+320287 Msa1337650:intron
GCAGCATCATCAAGGGCGCC+TGG 0.541314 tig0001526:-320305 None:intergenic
ATCTTCCGATTCGGCAGCAG+AGG 0.544864 tig0001526:-315993 None:intergenic
AGGGCATGTGATGCGATTGA+AGG 0.545871 tig0001526:-315865 None:intergenic
CATATACCTCCAGAATTGCA+TGG 0.565860 tig0001526:-319035 None:intergenic
ACTTCTGCTATAAAAGGCGA+AGG 0.577101 tig0001526:+320386 Msa1337650:CDS
CAATAGATCCCATGACTGAA+AGG 0.577176 tig0001526:+315730 Msa1337650:five_prime_UTR
TCAAATCTGGAGGTGGCTGA+AGG 0.580655 tig0001526:+321581 Msa1337650:CDS
TCGAAACTACTCTATGCAGA+GGG 0.583764 tig0001526:-321821 None:intergenic
CGTCACTGCAGCATCATCAA+GGG 0.584247 tig0001526:-320312 None:intergenic
TGATTATACTGAAATCGGAT+CGG 0.599932 tig0001526:-315914 None:intergenic
ATGACTGAAAGGTGGAGAAG+AGG 0.601995 tig0001526:+315741 Msa1337650:five_prime_UTR
AATACACTCAAATCTGGAGG+TGG 0.603022 tig0001526:+321574 Msa1337650:CDS
GAAGAATCGAATTGGAAGAG+GGG 0.603732 tig0001526:-315818 None:intergenic
GATCGAGTACGAACTTGGAA+TGG 0.605389 tig0001526:-316227 None:intergenic
TCTTCCGATTCGGCAGCAGA+GGG 0.610045 tig0001526:-315992 None:intergenic
GTTCTCGGTCTTGACAATGC+CGG 0.612027 tig0001526:+316077 Msa1337650:CDS
TGATAGGCTTGTGATAGCTA+GGG 0.616455 tig0001526:+319005 Msa1337650:CDS
GATTGGTGAATTCGGAAGGA+TGG 0.616718 tig0001526:+321638 Msa1337650:three_prime_UTR
CTCAAAGCAGAAGCGAAGAG+AGG 0.630142 tig0001526:-315889 None:intergenic
TTCGAAACTACTCTATGCAG+AGG 0.633391 tig0001526:-321822 None:intergenic
TTGTGTAATCGAGCTACATG+GGG 0.642122 tig0001526:+321869 Msa1337650:three_prime_UTR
TAGATCCCATGACTGAAAGG+TGG 0.653924 tig0001526:+315733 Msa1337650:five_prime_UTR
AGCAGAAGCGAAGAGAGGAA+GGG 0.660825 tig0001526:-315884 None:intergenic
TAGGCTTGTGATAGCTAGGG+AGG 0.666014 tig0001526:+319008 Msa1337650:CDS
AAGAAGCATACATAGAATGG+TGG 0.667666 tig0001526:-316105 None:intergenic
AGCAATACACTCAAATCTGG+AGG 0.669996 tig0001526:+321571 Msa1337650:CDS
GGAGTTCCATGCAATTCTGG+AGG 0.674172 tig0001526:+319029 Msa1337650:CDS
CGAAACTACTCTATGCAGAG+GGG 0.752901 tig0001526:-321820 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTAATAAACTATATTTTA+AGG - tig0001526:317720-317739 None:intergenic 10.0%
!! TAGTAATTTATTTATAATGT+TGG + tig0001526:318711-318730 Msa1337650:intron 10.0%
!! TTAAAATAAAATCTAGTAAA+AGG - tig0001526:319916-319935 None:intergenic 10.0%
!! AAAATAAAAACAATATTTAC+AGG - tig0001526:320648-320667 None:intergenic 10.0%
!!! TAAAAAGTTTTTCAAATATA+AGG - tig0001526:321127-321146 None:intergenic 10.0%
!!! AAAAACTTTTTACAAAAAAT+GGG + tig0001526:321135-321154 Msa1337650:intron 10.0%
!! GTTATAATTATTATTGTTAT+TGG + tig0001526:321697-321716 Msa1337650:intron 10.0%
!! AAAAAAAAAAGGAATAAAAT+AGG - tig0001526:321728-321747 None:intergenic 10.0%
!!! TTTCATTTTTTTTTTCAGAT+CGG + tig0001526:316179-316198 Msa1337650:intron 15.0%
!!! TGTATTTTATGTATGTTTTA+TGG + tig0001526:316532-316551 Msa1337650:intron 15.0%
!!! CAACTTTGAAATAAAATAAA+GGG - tig0001526:316768-316787 None:intergenic 15.0%
!!! ACAACTTTGAAATAAAATAA+AGG - tig0001526:316769-316788 None:intergenic 15.0%
!! ATTTACTTACAAAAAATTAC+TGG - tig0001526:316893-316912 None:intergenic 15.0%
!! AAAACTAATAAAACTTAACT+TGG - tig0001526:317086-317105 None:intergenic 15.0%
!! ATAATAAAAGTTATTGTCAA+AGG - tig0001526:317638-317657 None:intergenic 15.0%
!! TTAGATCATAATATCAAATA+GGG - tig0001526:318025-318044 None:intergenic 15.0%
!! ATTAGATCATAATATCAAAT+AGG - tig0001526:318026-318045 None:intergenic 15.0%
!! AAGAGTTAAGATTAAAAAAA+AGG - tig0001526:318081-318100 None:intergenic 15.0%
!!! TTTTTTCCTAATAAAATACA+AGG - tig0001526:318396-318415 None:intergenic 15.0%
!! AATTTACTACATATATATCA+GGG - tig0001526:318877-318896 None:intergenic 15.0%
!! AAATTTACTACATATATATC+AGG - tig0001526:318878-318897 None:intergenic 15.0%
!! AATTATTTATCAAACAAAAC+AGG - tig0001526:319491-319510 None:intergenic 15.0%
!! TATAATTACCAGTAAAAATA+AGG - tig0001526:319529-319548 None:intergenic 15.0%
!! CAATAAAATTACAATTACTA+AGG - tig0001526:319740-319759 None:intergenic 15.0%
!!! TAGTAATTGTAATTTTATTG+TGG + tig0001526:319740-319759 Msa1337650:intron 15.0%
!! GAAACAGATAAAAATTAATT+AGG - tig0001526:319892-319911 None:intergenic 15.0%
!!! TTTCATTTTTCAGTATTTAA+AGG + tig0001526:320521-320540 Msa1337650:intron 15.0%
!!! TAATGTTTAGCAATTTTTAT+AGG + tig0001526:320755-320774 Msa1337650:intron 15.0%
!! GATATTAAAATTATCTGTTA+TGG - tig0001526:320815-320834 None:intergenic 15.0%
!! CAATTCATTTGATATAATAT+AGG + tig0001526:320850-320869 Msa1337650:intron 15.0%
!!! TTTGACTTTAAAGTTTTTAT+AGG + tig0001526:321035-321054 Msa1337650:intron 15.0%
!!! GAAAAACTTTTTACAAAAAA+TGG + tig0001526:321134-321153 Msa1337650:intron 15.0%
!!! ACATTTTCATAAAATTTATG+CGG + tig0001526:321216-321235 Msa1337650:intron 15.0%
!!! TTTGTTTGAGATATAAAAAA+GGG - tig0001526:321291-321310 None:intergenic 15.0%
!!! TTTTGTTTGAGATATAAAAA+AGG - tig0001526:321292-321311 None:intergenic 15.0%
!! TATATCTCAAACAAAATTTA+AGG + tig0001526:321296-321315 Msa1337650:intron 15.0%
!! ATATCTCAAACAAAATTTAA+GGG + tig0001526:321297-321316 Msa1337650:intron 15.0%
!!! TCTTTGAAAACAAAAAAAAA+AGG - tig0001526:321739-321758 None:intergenic 15.0%
!!! ACAACATTAAATTTCAAGTT+TGG + tig0001526:316459-316478 Msa1337650:CDS 20.0%
!!! CAACATTAAATTTCAAGTTT+GGG + tig0001526:316460-316479 Msa1337650:CDS 20.0%
!! CAAAATTTGTAAAGATAACA+TGG - tig0001526:316616-316635 None:intergenic 20.0%
!! ATGTAAAAAACTAGCAATAA+AGG + tig0001526:316812-316831 Msa1337650:intron 20.0%
!!! TAAGTTTTATTAGTTTTTCC+CGG + tig0001526:317089-317108 Msa1337650:intron 20.0%
!! TAATTCAAAATATTGAGTAC+AGG - tig0001526:317327-317346 None:intergenic 20.0%
!! ATGCATTAAAGAAAATAAAC+AGG + tig0001526:317687-317706 Msa1337650:intron 20.0%
!!! ATCCAACTTTTATTTTATAC+AGG + tig0001526:317829-317848 Msa1337650:intron 20.0%
!!! AACTTTTATTTTATACAGGT+GGG + tig0001526:317833-317852 Msa1337650:intron 20.0%
!! TAGATCATAATATCAAATAG+GGG - tig0001526:318024-318043 None:intergenic 20.0%
!! ATTATGATCTAATTCAATTG+CGG + tig0001526:318033-318052 Msa1337650:intron 20.0%
!!! GTTTTATTCTTCTAGATTTT+AGG - tig0001526:318269-318288 None:intergenic 20.0%
!! TTGAAACTTCTCATTATATT+TGG - tig0001526:318349-318368 None:intergenic 20.0%
!!! AAGAAACCTTGTATTTTATT+AGG + tig0001526:318387-318406 Msa1337650:intron 20.0%
!! AATGTGGGAAAAAAATTATA+TGG + tig0001526:318771-318790 Msa1337650:intron 20.0%
!! AAATAATCAAAGACAGTAAA+AGG - tig0001526:318907-318926 None:intergenic 20.0%
!!! TTGATTATTTTTTTGTCCAT+AGG + tig0001526:318917-318936 Msa1337650:intron 20.0%
!!! TTTGTATTCCTTATTTTTAC+TGG + tig0001526:319518-319537 Msa1337650:intron 20.0%
!!! TAAAGGATTTGTTTACAAAA+TGG + tig0001526:319584-319603 Msa1337650:intron 20.0%
!!! ATTACTAAGGATTCATTTTT+TGG - tig0001526:319727-319746 None:intergenic 20.0%
!!! TAATTGTAATTTTATTGTGG+AGG + tig0001526:319743-319762 Msa1337650:intron 20.0%
!!! AATTGTAATTTTATTGTGGA+GGG + tig0001526:319744-319763 Msa1337650:intron 20.0%
!!! AAGTTTTAAAAATAGACCAT+TGG - tig0001526:320370-320389 None:intergenic 20.0%
!!! TTTAAAACTTCTGCTATAAA+AGG + tig0001526:320380-320399 Msa1337650:CDS 20.0%
!! TACAAATTTCTACTTATGTA+TGG - tig0001526:320704-320723 None:intergenic 20.0%
!! AATAAAAATAAAAAACGCAG+AGG + tig0001526:320888-320907 Msa1337650:intron 20.0%
!! ATAAAAATAAAAAACGCAGA+GGG + tig0001526:320889-320908 Msa1337650:intron 20.0%
!!! CATTTTCATAAAATTTATGC+GGG + tig0001526:321217-321236 Msa1337650:intron 20.0%
!!! ATTTTCATAAAATTTATGCG+GGG + tig0001526:321218-321237 Msa1337650:intron 20.0%
!! TAGATATAATTTAGATCGAT+TGG + tig0001526:321621-321640 Msa1337650:three_prime_UTR 20.0%
! CTCTTTGATTATACTGAAAT+CGG - tig0001526:315922-315941 None:intergenic 25.0%
! GATTAAAACATGAATGAATC+AGG - tig0001526:315967-315986 None:intergenic 25.0%
!! AGATTGTTTTCATCTGTTTT+CGG + tig0001526:316032-316051 Msa1337650:CDS 25.0%
!! ATTTTTGATACTTGCATGTA+TGG + tig0001526:316365-316384 Msa1337650:intron 25.0%
!!! AAATTTCAAGTTTGGGATTT+AGG + tig0001526:316467-316486 Msa1337650:CDS 25.0%
!! ATTTTGCATCATTTGATCAT+AGG + tig0001526:316630-316649 Msa1337650:intron 25.0%
!! TTTTGCATCATTTGATCATA+GGG + tig0001526:316631-316650 Msa1337650:intron 25.0%
! ATTTGAAAACCATACTAGTT+TGG - tig0001526:316726-316745 None:intergenic 25.0%
! AGCTTGAGGAAAAAAAAAAT+GGG - tig0001526:317218-317237 None:intergenic 25.0%
!!! GTTTTAAACTTTAAGTTTGC+TGG + tig0001526:317453-317472 Msa1337650:intron 25.0%
!!! TTGAATTTTGATATAGTGCA+AGG + tig0001526:317591-317610 Msa1337650:intron 25.0%
!!! TGAATTTTGATATAGTGCAA+GGG + tig0001526:317592-317611 Msa1337650:intron 25.0%
! CACCTGTATAAAATAAAAGT+TGG - tig0001526:317834-317853 None:intergenic 25.0%
!!! CAACTTTTATTTTATACAGG+TGG + tig0001526:317832-317851 Msa1337650:intron 25.0%
! TTTACAGCTAAACAGAAATA+TGG - tig0001526:318104-318123 None:intergenic 25.0%
!! TATCATTTTCAGAGAGAATT+AGG - tig0001526:318486-318505 None:intergenic 25.0%
!! AATTCTCTCTGAAAATGATA+AGG + tig0001526:318486-318505 Msa1337650:intron 25.0%
!! ATTCTCTCTGAAAATGATAA+GGG + tig0001526:318487-318506 Msa1337650:intron 25.0%
! AAAATGAATAAGATTGCGTT+AGG - tig0001526:318626-318645 None:intergenic 25.0%
!!! CTTATTCATTTTTGAAACTG+CGG + tig0001526:318634-318653 Msa1337650:intron 25.0%
! CTAAAAGAGAAATTCATCTT+TGG - tig0001526:318694-318713 None:intergenic 25.0%
! TGATTAAAAGAACAAATCAC+AGG + tig0001526:318802-318821 Msa1337650:intron 25.0%
! TAGATTATTGCTTGAGTATT+TGG - tig0001526:318964-318983 None:intergenic 25.0%
! AGCTTATATTGCAATTTACA+AGG + tig0001526:319154-319173 Msa1337650:intron 25.0%
! GCTTATATTGCAATTTACAA+GGG + tig0001526:319155-319174 Msa1337650:intron 25.0%
!!! TAGGTGTTATTTGTGATTAT+AGG + tig0001526:319361-319380 Msa1337650:intron 25.0%
!!! TTTTTGACTGAATCTAATTC+TGG + tig0001526:319409-319428 Msa1337650:intron 25.0%
! AAGTGTATTTACTGTTCTAA+AGG + tig0001526:319567-319586 Msa1337650:intron 25.0%
!! ATTGTAATTTTATTGTGGAG+GGG + tig0001526:319745-319764 Msa1337650:intron 25.0%
! AAGAAATGAAATTGACAAGT+AGG - tig0001526:319811-319830 None:intergenic 25.0%
! AGAATTTGATTCATAAGTGT+TGG + tig0001526:320090-320109 Msa1337650:intron 25.0%
!!! AATGCTATTTCAATGTAGTT+AGG + tig0001526:320448-320467 Msa1337650:intron 25.0%
! AAATTATCTGTTATGGATAG+TGG - tig0001526:320808-320827 None:intergenic 25.0%
!!! TGGTCACTGTTTTTTTTAAT+GGG + tig0001526:320949-320968 Msa1337650:intron 25.0%
! ATAAGGACTAAACTTATGTA+GGG - tig0001526:321110-321129 None:intergenic 25.0%
! TATAAGGACTAAACTTATGT+AGG - tig0001526:321111-321130 None:intergenic 25.0%
!!! TCTCTAATTTGCTTTTATAG+GGG - tig0001526:321194-321213 None:intergenic 25.0%
!!! GTCTCTAATTTGCTTTTATA+GGG - tig0001526:321195-321214 None:intergenic 25.0%
!!! TGTCTCTAATTTGCTTTTAT+AGG - tig0001526:321196-321215 None:intergenic 25.0%
!! TAAAATGCTGTGCTTTATTA+AGG + tig0001526:321248-321267 Msa1337650:intron 25.0%
! TTACGTTGTGTAGTTATTAA+TGG + tig0001526:321391-321410 Msa1337650:intron 25.0%
! TACGTTGTGTAGTTATTAAT+GGG + tig0001526:321392-321411 Msa1337650:intron 25.0%
! TCAACCTACATATTAACATT+TGG - tig0001526:321552-321571 None:intergenic 25.0%
TGATTATACTGAAATCGGAT+CGG - tig0001526:315917-315936 None:intergenic 30.0%
! ATGAAGAAGCATACATAGAA+TGG - tig0001526:316111-316130 None:intergenic 30.0%
TGATTATTTGATACAGCGAT+CGG + tig0001526:316410-316429 Msa1337650:intron 30.0%
ATCATTTGATCATAGGGATA+AGG + tig0001526:316637-316656 Msa1337650:intron 30.0%
TTACAAAAAATTACTGGTGC+TGG - tig0001526:316887-316906 None:intergenic 30.0%
TTGCATATCTTAATGACTTG+TGG + tig0001526:317030-317049 Msa1337650:intron 30.0%
! TGCATATCTTAATGACTTGT+GGG + tig0001526:317031-317050 Msa1337650:intron 30.0%
! TTCCTACCTCTAAGAAAAAA+AGG - tig0001526:317126-317145 None:intergenic 30.0%
GAGCTTGAGGAAAAAAAAAA+TGG - tig0001526:317219-317238 None:intergenic 30.0%
AAAAACAGTGGTTGTTGTAT+AGG - tig0001526:317293-317312 None:intergenic 30.0%
TAAATACTAGCAAGCATACA+TGG + tig0001526:317424-317443 Msa1337650:intron 30.0%
AAATACTAGCAAGCATACAT+GGG + tig0001526:317425-317444 Msa1337650:intron 30.0%
ATTAGAAATTGAAACAAGCC+AGG - tig0001526:317809-317828 None:intergenic 30.0%
TTACTTTAACAACGAATAGC+TGG + tig0001526:317950-317969 Msa1337650:intron 30.0%
GGATAGAAGAAAAATACTAC+TGG - tig0001526:318003-318022 None:intergenic 30.0%
TACTAGAAATACACACATCA+AGG - tig0001526:318141-318160 None:intergenic 30.0%
ACAATCTCATGTGATATTGT+AGG + tig0001526:318316-318335 Msa1337650:intron 30.0%
TCATGTGATATTGTAGGTTA+AGG + tig0001526:318322-318341 Msa1337650:intron 30.0%
TCAGAGAGAATTAGGAAATT+TGG - tig0001526:318478-318497 None:intergenic 30.0%
ACACACTTCATTTACAACTT+TGG + tig0001526:319093-319112 Msa1337650:intron 30.0%
TATTGCAATTTACAAGGGAT+TGG + tig0001526:319160-319179 Msa1337650:intron 30.0%
GACAATGCATAATATATGCA+AGG + tig0001526:319256-319275 Msa1337650:intron 30.0%
! AAGCTTCACGTAATCTATTT+TGG - tig0001526:319307-319326 None:intergenic 30.0%
GTACTATAGAAGAATGATGT+AGG + tig0001526:319342-319361 Msa1337650:intron 30.0%
AAACTAATTCCTCTTAGCTT+AGG - tig0001526:319392-319411 None:intergenic 30.0%
TGATTCATCCTAATTGGAAT+AGG + tig0001526:319436-319455 Msa1337650:intron 30.0%
!!! TGATCGTTGTTTTGAATGAT+TGG + tig0001526:319462-319481 Msa1337650:intron 30.0%
!!! GATCGTTGTTTTGAATGATT+GGG + tig0001526:319463-319482 Msa1337650:intron 30.0%
!!! ATCGTTGTTTTGAATGATTG+GGG + tig0001526:319464-319483 Msa1337650:intron 30.0%
TCGGAAACAACTTAAAACTA+TGG + tig0001526:319652-319671 Msa1337650:intron 30.0%
TAACTATTCTCCTTTGACTA+TGG + tig0001526:319933-319952 Msa1337650:intron 30.0%
!!! TTTCTCTGAACCTTTTTTTC+AGG + tig0001526:320017-320036 Msa1337650:intron 30.0%
AGTTCTTCTTCCTGAAAAAA+AGG - tig0001526:320030-320049 None:intergenic 30.0%
TTTCAGGAAGAAGAACTAAA+AGG + tig0001526:320033-320052 Msa1337650:intron 30.0%
!! TCTCATTTTTGCAAACAAAC+AGG + tig0001526:320065-320084 Msa1337650:CDS 30.0%
ACAAGATTAAAAATCGCCAA+TGG + tig0001526:320351-320370 Msa1337650:CDS 30.0%
!! GAGTTGATGATTGATAACAT+TGG - tig0001526:320556-320575 None:intergenic 30.0%
TATCAATCATCAACTCAGTT+AGG + tig0001526:320560-320579 Msa1337650:intron 30.0%
!!! GTGGATACTAGTTTTGTTAA+TGG - tig0001526:320789-320808 None:intergenic 30.0%
!!! GTGGTCACTGTTTTTTTTAA+TGG + tig0001526:320948-320967 Msa1337650:intron 30.0%
TGAATTTCCAATCCAATTAG+TGG + tig0001526:320999-321018 Msa1337650:intron 30.0%
AAATATGTTTGTAGTCCATG+TGG + tig0001526:321061-321080 Msa1337650:intron 30.0%
TCAAAAAGTGACATCAACAT+TGG - tig0001526:321445-321464 None:intergenic 30.0%
GATGCCAAATGTTAATATGT+AGG + tig0001526:321545-321564 Msa1337650:intron 30.0%
TTTAGATCGATTGGTGAATT+CGG + tig0001526:321630-321649 Msa1337650:three_prime_UTR 30.0%
!!! ATGGTCGACATTTGTTTTTT+TGG + tig0001526:321657-321676 Msa1337650:three_prime_UTR 30.0%
TCAGGATTTGGATTTGGATT+TGG - tig0001526:315777-315796 None:intergenic 35.0%
TGAGAATCAGGATTTGGATT+TGG - tig0001526:315783-315802 None:intergenic 35.0%
AGAAGAATCGAATTGGAAGA+GGG - tig0001526:315822-315841 None:intergenic 35.0%
TAGAAGAATCGAATTGGAAG+AGG - tig0001526:315823-315842 None:intergenic 35.0%
GGAAGATAGAAGAATCGAAT+TGG - tig0001526:315829-315848 None:intergenic 35.0%
GAAGGATTAAGGTTAGGTTT+CGG - tig0001526:315850-315869 None:intergenic 35.0%
! TTCATCTGTTTTCGGTAACA+AGG + tig0001526:316040-316059 Msa1337650:CDS 35.0%
! ACATAGAATGGTGGTTTTTC+CGG - tig0001526:316099-316118 None:intergenic 35.0%
! AAGAAGCATACATAGAATGG+TGG - tig0001526:316108-316127 None:intergenic 35.0%
TTGATACTTGCATGTATGGA+TGG + tig0001526:316369-316388 Msa1337650:intron 35.0%
GATTATTTGATACAGCGATC+GGG + tig0001526:316411-316430 Msa1337650:intron 35.0%
! ATACTAGTTTGGTCTAGGTA+AGG - tig0001526:316715-316734 None:intergenic 35.0%
TTACCTAGACCAAACTAGTA+TGG + tig0001526:316714-316733 Msa1337650:intron 35.0%
! AAACCATACTAGTTTGGTCT+AGG - tig0001526:316720-316739 None:intergenic 35.0%
GTAAAAACTCTACCTTCAGT+GGG + tig0001526:316938-316957 Msa1337650:intron 35.0%
TAGAAATTGGACTAAAACGC+TGG - tig0001526:316989-317008 None:intergenic 35.0%
CTCTACAAAGGGATAGAAAT+TGG - tig0001526:317002-317021 None:intergenic 35.0%
TTTCTATCCCTTTGTAGAGT+AGG + tig0001526:317003-317022 Msa1337650:intron 35.0%
!! AAAAAAGGCCTTAGTTTGTC+CGG - tig0001526:317111-317130 None:intergenic 35.0%
!!! CTAAGGCCTTTTTTTCTTAG+AGG + tig0001526:317117-317136 Msa1337650:intron 35.0%
GATTTAGTGAGGAAAAACAG+TGG - tig0001526:317305-317324 None:intergenic 35.0%
ATTGAGTACAGGATTTAGTG+AGG - tig0001526:317316-317335 None:intergenic 35.0%
TTTGAATTAACCTGTGAACC+TGG + tig0001526:317338-317357 Msa1337650:intron 35.0%
!!! AAGTTTGCTGGTCTCATTTT+TGG + tig0001526:317465-317484 Msa1337650:intron 35.0%
!!! AGTTTGCTGGTCTCATTTTT+GGG + tig0001526:317466-317485 Msa1337650:intron 35.0%
AACATGTAACAAAGCGAGTT+TGG + tig0001526:317507-317526 Msa1337650:intron 35.0%
! TGGATAATTTTGTCCTCTTC+TGG + tig0001526:317527-317546 Msa1337650:intron 35.0%
CTAAGAAAATAGCTTGACAC+AGG - tig0001526:317666-317685 None:intergenic 35.0%
! AGTGCTATTGTAATAAGTCC+TGG + tig0001526:317788-317807 Msa1337650:intron 35.0%
CAAGTATCAGGTAAACCTTA+TGG + tig0001526:317860-317879 Msa1337650:intron 35.0%
GATGCAAGAATGAAACCATA+AGG - tig0001526:317878-317897 None:intergenic 35.0%
!! TTCTTGCATCTTTTGACTGA+TGG + tig0001526:317888-317907 Msa1337650:intron 35.0%
AAAAGGAATTGCATGATGAG+TGG - tig0001526:318064-318083 None:intergenic 35.0%
CTAATTAACTGCAGAAGGAT+TGG - tig0001526:318172-318191 None:intergenic 35.0%
TCACACTAATTAACTGCAGA+AGG - tig0001526:318177-318196 None:intergenic 35.0%
TAGGAAATTTGGCCATAAAG+AGG - tig0001526:318467-318486 None:intergenic 35.0%
TTGCCTATAAACAAAAGGAG+GGG - tig0001526:318526-318545 None:intergenic 35.0%
GTTGCCTATAAACAAAAGGA+GGG - tig0001526:318527-318546 None:intergenic 35.0%
GAACGTTGCCTATAAACAAA+AGG - tig0001526:318531-318550 None:intergenic 35.0%
! CTTATTTCTTCTGACCATCT+CGG + tig0001526:318551-318570 Msa1337650:intron 35.0%
TTGTGGAAAGAAATGCTTTG+TGG + tig0001526:318666-318685 Msa1337650:intron 35.0%
! TGCCATTTCACTTGTAAATG+TGG + tig0001526:318755-318774 Msa1337650:intron 35.0%
GCCATTTCACTTGTAAATGT+GGG + tig0001526:318756-318775 Msa1337650:intron 35.0%
TCCCACATTTACAAGTGAAA+TGG - tig0001526:318760-318779 None:intergenic 35.0%
! TGAATTCTTTTCCCATCTTG+TGG - tig0001526:318853-318872 None:intergenic 35.0%
! TTTTTGTCCATAGGCCATAT+TGG + tig0001526:318926-318945 Msa1337650:intron 35.0%
TTGATTCAAGTGACACTGAT+AGG + tig0001526:318989-319008 Msa1337650:CDS 35.0%
TGCATAATATATGCAAGGTC+TGG + tig0001526:319261-319280 Msa1337650:intron 35.0%
GCATAATATATGCAAGGTCT+GGG + tig0001526:319262-319281 Msa1337650:intron 35.0%
CATAATATATGCAAGGTCTG+GGG + tig0001526:319263-319282 Msa1337650:intron 35.0%
!! CTTCACGTAATCTATTTTGG+TGG - tig0001526:319304-319323 None:intergenic 35.0%
GGTGTTTGATTCATCCTAAT+TGG + tig0001526:319430-319449 Msa1337650:intron 35.0%
GATCAAAGCCTATTCCAATT+AGG - tig0001526:319447-319466 None:intergenic 35.0%
!!! TCGTTGTTTTGAATGATTGG+GGG + tig0001526:319465-319484 Msa1337650:intron 35.0%
! TAAGTTGTTTCCGACTATCA+AGG - tig0001526:319646-319665 None:intergenic 35.0%
GACAACAAAACCATAGTCAA+AGG - tig0001526:319946-319965 None:intergenic 35.0%
! TGGATGCACATATTTTCACT+AGG + tig0001526:320110-320129 Msa1337650:intron 35.0%
! GGATGCACATATTTTCACTA+GGG + tig0001526:320111-320130 Msa1337650:intron 35.0%
! GATGCACATATTTTCACTAG+GGG + tig0001526:320112-320131 Msa1337650:intron 35.0%
! ATGCACATATTTTCACTAGG+GGG + tig0001526:320113-320132 Msa1337650:intron 35.0%
AGCTATGAAGCTGATATGAT+CGG + tig0001526:320163-320182 Msa1337650:intron 35.0%
GTGCATGTGCATAGATAATA+TGG + tig0001526:320202-320221 Msa1337650:intron 35.0%
TGCAGCATCACTACTTATTT+AGG - tig0001526:320485-320504 None:intergenic 35.0%
CAGAGGGAAAAAAAATGACT+TGG + tig0001526:320905-320924 Msa1337650:intron 35.0%
! TTACAAGTTGGAATTCCACA+TGG - tig0001526:321079-321098 None:intergenic 35.0%
AGGGACTAAACTTTACAAGT+TGG - tig0001526:321091-321110 None:intergenic 35.0%
! TATGCTCGTTTGAAATGTGA+AGG + tig0001526:321330-321349 Msa1337650:intron 35.0%
! ATGCTCGTTTGAAATGTGAA+GGG + tig0001526:321331-321350 Msa1337650:intron 35.0%
TACACAACGTAAAAGTCCAT+AGG - tig0001526:321383-321402 None:intergenic 35.0%
! ACTTCCTTTTTGTTGCTCAT+TGG + tig0001526:321514-321533 Msa1337650:intron 35.0%
! CTTCCTTTTTGTTGCTCATT+GGG + tig0001526:321515-321534 Msa1337650:intron 35.0%
! TTCCTTTTTGTTGCTCATTG+GGG + tig0001526:321516-321535 Msa1337650:intron 35.0%
TTGAGCAATACACTCAAATC+TGG + tig0001526:321568-321587 Msa1337650:CDS 35.0%
TTTGTGTAATCGAGCTACAT+GGG + tig0001526:321868-321887 Msa1337650:three_prime_UTR 35.0%
CAATAGATCCCATGACTGAA+AGG + tig0001526:315730-315749 Msa1337650:five_prime_UTR 40.0%
CGATGATGAGAATCAGGATT+TGG - tig0001526:315789-315808 None:intergenic 40.0%
ACGAAACGATGATGAGAATC+AGG - tig0001526:315795-315814 None:intergenic 40.0%
GAAGAATCGAATTGGAAGAG+GGG - tig0001526:315821-315840 None:intergenic 40.0%
GCGATTGAAGGATTAAGGTT+AGG - tig0001526:315856-315875 None:intergenic 40.0%
GTGATGCGATTGAAGGATTA+AGG - tig0001526:315861-315880 None:intergenic 40.0%
TGAATCAGGTGCAAACGATT+CGG - tig0001526:315953-315972 None:intergenic 40.0%
ACTAATCCCATCTTCCGATT+CGG - tig0001526:316005-316024 None:intergenic 40.0%
!! TTTTTCAGATCGGCTTCAGA+TGG + tig0001526:316189-316208 Msa1337650:intron 40.0%
!! TTTTCAGATCGGCTTCAGAT+GGG + tig0001526:316190-316209 Msa1337650:intron 40.0%
AATGAGATCGAGTACGAACT+TGG - tig0001526:316235-316254 None:intergenic 40.0%
TACTTGCATGTATGGATGGA+TGG + tig0001526:316373-316392 Msa1337650:intron 40.0%
CACTAAACATGCAACGACAT+AGG - tig0001526:316918-316937 None:intergenic 40.0%
CTATGTCGTTGCATGTTTAG+TGG + tig0001526:316916-316935 Msa1337650:intron 40.0%
GGTAAAAACTCTACCTTCAG+TGG + tig0001526:316937-316956 Msa1337650:intron 40.0%
CTACAAAAATTGCCCACTGA+AGG - tig0001526:316953-316972 None:intergenic 40.0%
! CTTCAGTGGGCAATTTTTGT+AGG + tig0001526:316951-316970 Msa1337650:intron 40.0%
ACTAAAACGCTGGACACAAT+AGG - tig0001526:316979-316998 None:intergenic 40.0%
CAAGTGACCTACTCTACAAA+GGG - tig0001526:317013-317032 None:intergenic 40.0%
! AGTTTTTCCCGGACAAACTA+AGG + tig0001526:317100-317119 Msa1337650:intron 40.0%
!! AAAAAGGCCTTAGTTTGTCC+GGG - tig0001526:317110-317129 None:intergenic 40.0%
!!! GGCCTTTTTTTCTTAGAGGT+AGG + tig0001526:317121-317140 Msa1337650:intron 40.0%
TGTTGTATAGGATTTGAGCC+TGG - tig0001526:317281-317300 None:intergenic 40.0%
ATTGACACAGTCCTATGAGT+AGG - tig0001526:317380-317399 None:intergenic 40.0%
! TAATTTTGTCCTCTTCTGGC+TGG + tig0001526:317531-317550 Msa1337650:intron 40.0%
AAAAAATCACCAGCCAGAAG+AGG - tig0001526:317543-317562 None:intergenic 40.0%
ACACACATCAAGGACTTAGT+AGG - tig0001526:318131-318150 None:intergenic 40.0%
TGCAGCATCTTTCTGTTGTT+GGG - tig0001526:318426-318445 None:intergenic 40.0%
AAAGATGCTGCAGAACTTAG+AGG + tig0001526:318434-318453 Msa1337650:intron 40.0%
AAGATGCTGCAGAACTTAGA+GGG + tig0001526:318435-318454 Msa1337650:intron 40.0%
!! CAACCCCTCCTTTTGTTTAT+AGG + tig0001526:318520-318539 Msa1337650:intron 40.0%
CGTTGCCTATAAACAAAAGG+AGG - tig0001526:318528-318547 None:intergenic 40.0%
CGAGATGGTCAGAAGAAATA+AGG - tig0001526:318553-318572 None:intergenic 40.0%
TAAGTGAGAGTGAGAGACTT+AGG - tig0001526:318589-318608 None:intergenic 40.0%
TCACAGGAAAATCGAAAACC+AGG + tig0001526:318818-318837 Msa1337650:intron 40.0%
! TCTTTTCCCATCTTGTGGTT+TGG - tig0001526:318848-318867 None:intergenic 40.0%
GGAAAGTAACACCTCCAATA+TGG - tig0001526:318943-318962 None:intergenic 40.0%
TGATAGGCTTGTGATAGCTA+GGG + tig0001526:319005-319024 Msa1337650:CDS 40.0%
CATATACCTCCAGAATTGCA+TGG - tig0001526:319038-319057 None:intergenic 40.0%
TGCAATTTACAAGGGATTGG+CGG + tig0001526:319163-319182 Msa1337650:intron 40.0%
!!! AATCTATTTTGGTGGTGGCT+GGG - tig0001526:319296-319315 None:intergenic 40.0%
!!! TAATCTATTTTGGTGGTGGC+TGG - tig0001526:319297-319316 None:intergenic 40.0%
!!! CACGTAATCTATTTTGGTGG+TGG - tig0001526:319301-319320 None:intergenic 40.0%
! TTCATGCACTCCTTGATAGT+CGG + tig0001526:319633-319652 Msa1337650:intron 40.0%
ACTAGGGGGATAAGAAGTAA+GGG + tig0001526:320127-320146 Msa1337650:intron 40.0%
GCTATGAAGCTGATATGATC+GGG + tig0001526:320164-320183 Msa1337650:intron 40.0%
! TAGATCCTGCATAATGGAAC+GGG - tig0001526:320285-320304 None:intergenic 40.0%
! GTAGATCCTGCATAATGGAA+CGG - tig0001526:320286-320305 None:intergenic 40.0%
ACTTCTGCTATAAAAGGCGA+AGG + tig0001526:320386-320405 Msa1337650:CDS 40.0%
! AAAAGGCGAAGGACTTTTTG+AGG + tig0001526:320397-320416 Msa1337650:CDS 40.0%
! AAAGGCGAAGGACTTTTTGA+GGG + tig0001526:320398-320417 Msa1337650:CDS 40.0%
TCATCAACTCAGTTAGGACT+TGG + tig0001526:320566-320585 Msa1337650:intron 40.0%
CATCAACTCAGTTAGGACTT+GGG + tig0001526:320567-320586 Msa1337650:intron 40.0%
TGGCCAGATCAATGTTGAAT+TGG + tig0001526:320925-320944 Msa1337650:intron 40.0%
GGCCAGATCAATGTTGAATT+GGG + tig0001526:320926-320945 Msa1337650:intron 40.0%
CACCCAATTCAACATTGATC+TGG - tig0001526:320931-320950 None:intergenic 40.0%
CAGATCAATGTTGAATTGGG+TGG + tig0001526:320929-320948 Msa1337650:intron 40.0%
! ATGTGAAGGGAGGTATATCT+TGG + tig0001526:321344-321363 Msa1337650:intron 40.0%
TGGTCTAGGAAATATGCCTA+TGG + tig0001526:321364-321383 Msa1337650:intron 40.0%
! AGCAACAAAAAGGAAGTGCA+AGG - tig0001526:321511-321530 None:intergenic 40.0%
AACCCCAATGAGCAACAAAA+AGG - tig0001526:321521-321540 None:intergenic 40.0%
AGCAATACACTCAAATCTGG+AGG + tig0001526:321571-321590 Msa1337650:CDS 40.0%
AATACACTCAAATCTGGAGG+TGG + tig0001526:321574-321593 Msa1337650:CDS 40.0%
TCGAAACTACTCTATGCAGA+GGG - tig0001526:321824-321843 None:intergenic 40.0%
TTCGAAACTACTCTATGCAG+AGG - tig0001526:321825-321844 None:intergenic 40.0%
GTTTGTGTAATCGAGCTACA+TGG + tig0001526:321867-321886 Msa1337650:three_prime_UTR 40.0%
TTGTGTAATCGAGCTACATG+GGG + tig0001526:321869-321888 Msa1337650:three_prime_UTR 40.0%
TAGATCCCATGACTGAAAGG+TGG + tig0001526:315733-315752 Msa1337650:five_prime_UTR 45.0%
CTTCTCCACCTTTCAGTCAT+GGG - tig0001526:315741-315760 None:intergenic 45.0%
TCTTCTCCACCTTTCAGTCA+TGG - tig0001526:315742-315761 None:intergenic 45.0%
ATGACTGAAAGGTGGAGAAG+AGG + tig0001526:315741-315760 Msa1337650:five_prime_UTR 45.0%
TGACTGAAAGGTGGAGAAGA+GGG + tig0001526:315742-315761 Msa1337650:five_prime_UTR 45.0%
GAAGCTCGAATTCTCGTTCT+CGG + tig0001526:316062-316081 Msa1337650:CDS 45.0%
GATCGAGTACGAACTTGGAA+TGG - tig0001526:316230-316249 None:intergenic 45.0%
TGTATGGATGGATGGCTGAT+TGG + tig0001526:316381-316400 Msa1337650:intron 45.0%
GCAAGTGACCTACTCTACAA+AGG - tig0001526:317014-317033 None:intergenic 45.0%
AATTTGAACCAGCGTAGCTC+AGG + tig0001526:317149-317168 Msa1337650:intron 45.0%
GAGCAAGTTATCTGAGCTTG+AGG - tig0001526:317232-317251 None:intergenic 45.0%
TTGCTTGAGCTTAATGAGCC+AGG + tig0001526:317260-317279 Msa1337650:intron 45.0%
CTTACCTCCATCCTACTCAT+AGG + tig0001526:317366-317385 Msa1337650:intron 45.0%
ACACAGTCCTATGAGTAGGA+TGG - tig0001526:317376-317395 None:intergenic 45.0%
AACGAATAGCTGGTGACTTC+TGG + tig0001526:317960-317979 Msa1337650:intron 45.0%
GTGTGTGTGTGTGAATGTGT+AGG + tig0001526:318219-318238 Msa1337650:intron 45.0%
CAGCATCTTTCTGTTGTTGG+GGG - tig0001526:318424-318443 None:intergenic 45.0%
GCAGCATCTTTCTGTTGTTG+GGG - tig0001526:318425-318444 None:intergenic 45.0%
CTGCAGCATCTTTCTGTTGT+TGG - tig0001526:318427-318446 None:intergenic 45.0%
! GAGAGACTTAGGTTAGTTGC+TGG - tig0001526:318578-318597 None:intergenic 45.0%
AACTGCGGTAGCTCATATTG+TGG + tig0001526:318649-318668 Msa1337650:intron 45.0%
GCATGTCAGAACTACTGCTT+GGG - tig0001526:318738-318757 None:intergenic 45.0%
CAGGAAAATCGAAAACCAGG+TGG + tig0001526:318821-318840 Msa1337650:intron 45.0%
TTGTCCATAGGCCATATTGG+AGG + tig0001526:318929-318948 Msa1337650:intron 45.0%
AACACCTCCAATATGGCCTA+TGG - tig0001526:318936-318955 None:intergenic 45.0%
CTGATAGGCTTGTGATAGCT+AGG + tig0001526:319004-319023 Msa1337650:CDS 45.0%
AAGTGTGTGTGTGTGTGTGT+GGG - tig0001526:319081-319100 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + tig0001526:319234-319253 Msa1337650:intron 45.0%
!!! ATCTATTTTGGTGGTGGCTG+GGG - tig0001526:319295-319314 None:intergenic 45.0%
CACTAGGGGGATAAGAAGTA+AGG + tig0001526:320126-320145 Msa1337650:intron 45.0%
TCCATTATGCAGGATCTACC+AGG + tig0001526:320287-320306 Msa1337650:intron 45.0%
!! GACTTTTTGAGGGACTTGAC+TGG + tig0001526:320408-320427 Msa1337650:CDS 45.0%
GTAGCAGCCACTAATTGGAT+TGG - tig0001526:321009-321028 None:intergenic 45.0%
GACTAGTAGCAGCCACTAAT+TGG - tig0001526:321014-321033 None:intergenic 45.0%
! CTCGTTTGAAATGTGAAGGG+AGG + tig0001526:321334-321353 Msa1337650:intron 45.0%
! AGGGAGGTATATCTTGGTCT+AGG + tig0001526:321350-321369 Msa1337650:intron 45.0%
GATCGATTGGTGAATTCGGA+AGG + tig0001526:321634-321653 Msa1337650:three_prime_UTR 45.0%
GATTGGTGAATTCGGAAGGA+TGG + tig0001526:321638-321657 Msa1337650:three_prime_UTR 45.0%
CGAAACTACTCTATGCAGAG+GGG - tig0001526:321823-321842 None:intergenic 45.0%
!!! TTATAATTATTATTGTTATT+GGG + tig0001526:321698-321717 Msa1337650:intron 5.0%
AGGGCATGTGATGCGATTGA+AGG - tig0001526:315868-315887 None:intergenic 50.0%
AGCAGAAGCGAAGAGAGGAA+GGG - tig0001526:315887-315906 None:intergenic 50.0%
AAGCAGAAGCGAAGAGAGGA+AGG - tig0001526:315888-315907 None:intergenic 50.0%
CTCAAAGCAGAAGCGAAGAG+AGG - tig0001526:315892-315911 None:intergenic 50.0%
TAATCCCTCTGCTGCCGAAT+CGG + tig0001526:315988-316007 Msa1337650:five_prime_UTR 50.0%
GTTCTCGGTCTTGACAATGC+CGG + tig0001526:316077-316096 Msa1337650:CDS 50.0%
GTAAGTCAAGCCAGGTTCAC+AGG - tig0001526:317351-317370 None:intergenic 50.0%
CAGTCCTATGAGTAGGATGG+AGG - tig0001526:317373-317392 None:intergenic 50.0%
CAGGTGGGCAAACAAGTATC+AGG + tig0001526:317848-317867 Msa1337650:intron 50.0%
AGAGGGTCTGCACCTCTTTA+TGG + tig0001526:318452-318471 Msa1337650:intron 50.0%
GGCATGTCAGAACTACTGCT+TGG - tig0001526:318739-318758 None:intergenic 50.0%
!! ATCTTGTGGTTTGGTCCACC+TGG - tig0001526:318839-318858 None:intergenic 50.0%
AGGTGGACCAAACCACAAGA+TGG + tig0001526:318838-318857 Msa1337650:intron 50.0%
GGTGGACCAAACCACAAGAT+GGG + tig0001526:318839-318858 Msa1337650:intron 50.0%
TAGGCTTGTGATAGCTAGGG+AGG + tig0001526:319008-319027 Msa1337650:CDS 50.0%
GGAGGAGTTCCATGCAATTC+TGG + tig0001526:319026-319045 Msa1337650:CDS 50.0%
GGAGTTCCATGCAATTCTGG+AGG + tig0001526:319029-319048 Msa1337650:CDS 50.0%
GTGGGTGTGTGTGTTGTATC+AGG - tig0001526:319063-319082 None:intergenic 50.0%
GAAGTGTGTGTGTGTGTGTG+TGG - tig0001526:319082-319101 None:intergenic 50.0%
TAGGCGTCTCCTAAGCTAAG+AGG + tig0001526:319380-319399 Msa1337650:intron 50.0%
TGTGTCCCGTTCCATTATGC+AGG + tig0001526:320277-320296 Msa1337650:intron 50.0%
GCCTGGTAGATCCTGCATAA+TGG - tig0001526:320291-320310 None:intergenic 50.0%
CGTCACTGCAGCATCATCAA+GGG - tig0001526:320315-320334 None:intergenic 50.0%
!! CCTTGATGATGCTGCAGTGA+CGG + tig0001526:320313-320332 Msa1337650:CDS 50.0%
TCAAATCTGGAGGTGGCTGA+AGG + tig0001526:321581-321600 Msa1337650:CDS 50.0%
!! TCTTCCGATTCGGCAGCAGA+GGG - tig0001526:315995-316014 None:intergenic 55.0%
!! ATCTTCCGATTCGGCAGCAG+AGG - tig0001526:315996-316015 None:intergenic 55.0%
TCTGCTGCCGAATCGGAAGA+TGG + tig0001526:315995-316014 Msa1337650:exon 55.0%
CTGCTGCCGAATCGGAAGAT+GGG + tig0001526:315996-316015 Msa1337650:exon 55.0%
GAACCAGCGTAGCTCAGGTT+TGG + tig0001526:317154-317173 Msa1337650:intron 55.0%
AAGCCAAACCTGAGCTACGC+TGG - tig0001526:317160-317179 None:intergenic 55.0%
GGATGGAGGTAAGTCAAGCC+AGG - tig0001526:317359-317378 None:intergenic 55.0%
! GGTTAGTTGCTGGACCGAGA+TGG - tig0001526:318568-318587 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - tig0001526:319232-319251 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + tig0001526:319229-319248 Msa1337650:intron 55.0%
GGGGGATAAGAAGTAAGGGC+TGG + tig0001526:320131-320150 Msa1337650:intron 55.0%
CCGTCACTGCAGCATCATCA+AGG - tig0001526:320316-320335 None:intergenic 55.0%
!! GCAGCATCATCAAGGGCGCC+TGG - tig0001526:320308-320327 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0001526 gene 315720 321934 315720 ID=Msa1337650;Name=Msa1337650
tig0001526 mRNA 315720 321934 315720 ID=Msa1337650-mRNA-1;Parent=Msa1337650;Name=Msa1337650-mRNA-1;_AED=0.27;_eAED=0.27;_QI=294|1|1|1|0.75|0.77|9|314|182
tig0001526 exon 315720 316116 315720 ID=Msa1337650-mRNA-1:exon:1276;Parent=Msa1337650-mRNA-1
tig0001526 exon 316197 316235 316197 ID=Msa1337650-mRNA-1:exon:1277;Parent=Msa1337650-mRNA-1
tig0001526 exon 316426 316488 316426 ID=Msa1337650-mRNA-1:exon:1278;Parent=Msa1337650-mRNA-1
tig0001526 exon 317851 317869 317851 ID=Msa1337650-mRNA-1:exon:1279;Parent=Msa1337650-mRNA-1
tig0001526 exon 318939 319050 318939 ID=Msa1337650-mRNA-1:exon:1280;Parent=Msa1337650-mRNA-1
tig0001526 exon 320039 320086 320039 ID=Msa1337650-mRNA-1:exon:1281;Parent=Msa1337650-mRNA-1
tig0001526 exon 320299 320429 320299 ID=Msa1337650-mRNA-1:exon:1282;Parent=Msa1337650-mRNA-1
tig0001526 exon 321567 321705 321567 ID=Msa1337650-mRNA-1:exon:1283;Parent=Msa1337650-mRNA-1
tig0001526 exon 321726 321934 321726 ID=Msa1337650-mRNA-1:exon:1284;Parent=Msa1337650-mRNA-1
tig0001526 five_prime_UTR 315720 316013 315720 ID=Msa1337650-mRNA-1:five_prime_utr;Parent=Msa1337650-mRNA-1
tig0001526 CDS 316014 316116 316014 ID=Msa1337650-mRNA-1:cds;Parent=Msa1337650-mRNA-1
tig0001526 CDS 316197 316235 316197 ID=Msa1337650-mRNA-1:cds;Parent=Msa1337650-mRNA-1
tig0001526 CDS 316426 316488 316426 ID=Msa1337650-mRNA-1:cds;Parent=Msa1337650-mRNA-1
tig0001526 CDS 317851 317869 317851 ID=Msa1337650-mRNA-1:cds;Parent=Msa1337650-mRNA-1
tig0001526 CDS 318939 319050 318939 ID=Msa1337650-mRNA-1:cds;Parent=Msa1337650-mRNA-1
tig0001526 CDS 320039 320086 320039 ID=Msa1337650-mRNA-1:cds;Parent=Msa1337650-mRNA-1
tig0001526 CDS 320299 320429 320299 ID=Msa1337650-mRNA-1:cds;Parent=Msa1337650-mRNA-1
tig0001526 CDS 321567 321600 321567 ID=Msa1337650-mRNA-1:cds;Parent=Msa1337650-mRNA-1
tig0001526 three_prime_UTR 321601 321705 321601 ID=Msa1337650-mRNA-1:three_prime_utr;Parent=Msa1337650-mRNA-1
tig0001526 three_prime_UTR 321726 321934 321726 ID=Msa1337650-mRNA-1:three_prime_utr;Parent=Msa1337650-mRNA-1
Gene Sequence

>Msa1337650

ATGGGATTAGTATTTACTAGATTGTTTTCATCTGTTTTCGGTAACAAGGAAGCTCGAATTCTCGTTCTCGGTCTTGACAATGCCGGAAAAACCACCATTCTATATCGGCTTCAGATGGGAGAAGTTGTCTCTACCATTCCAACGATCGGGTTTAATGTTGAAACTGTGCAGTATAACAACATTAAATTTCAAGTTTGGGATTTAGGTGGGCAAACAAGTATCAGGCCATATTGGAGGTGTTACTTTCCAAATACTCAAGCAATAATCTATGTTGTTGATTCAAGTGACACTGATAGGCTTGTGATAGCTAGGGAGGAGTTCCATGCAATTCTGGAGGAAGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTTGCAAACAAACAGGATCTACCAGGCGCCCTTGATGATGCTGCAGTGACGGAGTCTCTTGAGTTGCACAAGATTAAAAATCGCCAATGGTCTATTTTTAAAACTTCTGCTATAAAAGGCGAAGGACTTTTTGAGGGACTTGACTGGTTGAGCAATACACTCAAATCTGGAGGTGGCTGA

Protein sequence

>Msa1337650

MGLVFTRLFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVIAREEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTESLELHKIKNRQWSIFKTSAIKGEGLFEGLDWLSNTLKSGGG*