Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1338900 | XP_013470402.1 | 94.235 | 503 | 15 | 3 | 1 | 490 | 31 | 532 | 0.0 | 968 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1338900 | sp|O49696|ALMTC_ARATH | 57.500 | 520 | 168 | 9 | 3 | 474 | 35 | 549 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1338900 | A0A072W2H7 | 94.235 | 503 | 15 | 3 | 1 | 490 | 31 | 532 | 0.0 | 968 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1338900 | Msa1355630 | 0.844235 | 8.572502e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1338900 | MtrunA17_Chr1g0212251 | 94.235 | 503 | 15 | 3 | 1 | 490 | 31 | 532 | 0.0 | 968 |
| Msa1338900 | MtrunA17_Chr1g0212201 | 83.333 | 504 | 68 | 5 | 1 | 490 | 35 | 536 | 0.0 | 855 |
| Msa1338900 | MtrunA17_Chr1g0212291 | 79.487 | 507 | 83 | 6 | 1 | 489 | 32 | 535 | 0.0 | 796 |
| Msa1338900 | MtrunA17_Chr4g0054741 | 61.847 | 498 | 172 | 6 | 3 | 490 | 45 | 534 | 0.0 | 572 |
| Msa1338900 | MtrunA17_Chr5g0400471 | 55.532 | 470 | 160 | 8 | 63 | 490 | 3 | 465 | 2.58e-155 | 449 |
| Msa1338900 | MtrunA17_Chr4g0054771 | 58.015 | 393 | 152 | 6 | 102 | 490 | 3 | 386 | 7.54e-149 | 430 |
| Msa1338900 | MtrunA17_Chr1g0188871 | 42.778 | 360 | 191 | 5 | 3 | 353 | 42 | 395 | 1.34e-94 | 295 |
| Msa1338900 | MtrunA17_Chr1g0188881 | 40.634 | 347 | 190 | 5 | 3 | 339 | 48 | 388 | 3.36e-87 | 276 |
| Msa1338900 | MtrunA17_Chr4g0025591 | 44.089 | 313 | 166 | 2 | 7 | 312 | 41 | 351 | 6.24e-84 | 267 |
| Msa1338900 | MtrunA17_Chr7g0267471 | 41.908 | 346 | 189 | 3 | 2 | 339 | 37 | 378 | 9.38e-80 | 256 |
| Msa1338900 | MtrunA17_Chr7g0259731 | 40.256 | 313 | 171 | 5 | 12 | 313 | 61 | 368 | 3.19e-77 | 248 |
| Msa1338900 | MtrunA17_Chr2g0321971 | 41.009 | 317 | 173 | 3 | 7 | 313 | 37 | 349 | 6.33e-75 | 243 |
| Msa1338900 | MtrunA17_Chr8g0390931 | 31.365 | 491 | 290 | 10 | 7 | 456 | 59 | 543 | 3.85e-74 | 244 |
| Msa1338900 | MtrunA17_Chr6g0484691 | 32.323 | 495 | 290 | 11 | 6 | 456 | 83 | 576 | 2.83e-71 | 237 |
| Msa1338900 | MtrunA17_Chr2g0321961 | 37.971 | 345 | 200 | 6 | 7 | 341 | 37 | 377 | 1.20e-69 | 229 |
| Msa1338900 | MtrunA17_Chr1g0210101 | 33.125 | 480 | 285 | 12 | 5 | 456 | 111 | 582 | 6.67e-68 | 228 |
| Msa1338900 | MtrunA17_Chr8g0390921 | 29.518 | 498 | 301 | 10 | 6 | 456 | 59 | 553 | 9.85e-64 | 216 |
| Msa1338900 | MtrunA17_Chr8g0390901 | 28.311 | 438 | 271 | 8 | 61 | 456 | 9 | 445 | 1.32e-54 | 189 |
| Msa1338900 | MtrunA17_Chr4g0054761 | 74.510 | 102 | 26 | 0 | 3 | 104 | 45 | 146 | 1.45e-31 | 119 |
| Msa1338900 | MtrunA17_Chr5g0400481 | 69.841 | 63 | 19 | 0 | 3 | 65 | 53 | 115 | 1.98e-24 | 97.8 |
| Msa1338900 | MtrunA17_Chr8g0390911 | 48.276 | 58 | 29 | 1 | 6 | 62 | 63 | 120 | 3.24e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1338900 | AT4G17970.1 | 57.500 | 520 | 168 | 9 | 3 | 474 | 35 | 549 | 0.0 | 565 |
| Msa1338900 | AT5G46610.1 | 57.058 | 503 | 181 | 9 | 3 | 474 | 37 | 535 | 0.0 | 551 |
| Msa1338900 | AT5G46600.1 | 55.419 | 489 | 184 | 6 | 3 | 457 | 38 | 526 | 0.0 | 518 |
| Msa1338900 | AT5G46610.2 | 52.684 | 503 | 179 | 10 | 3 | 474 | 37 | 511 | 2.12e-170 | 490 |
| Msa1338900 | AT5G46610.3 | 51.613 | 496 | 172 | 9 | 3 | 474 | 37 | 488 | 1.96e-163 | 472 |
| Msa1338900 | AT4G00910.1 | 35.579 | 475 | 245 | 10 | 1 | 464 | 53 | 477 | 1.83e-96 | 300 |
| Msa1338900 | AT1G08440.1 | 40.401 | 349 | 185 | 6 | 7 | 339 | 13 | 354 | 6.97e-78 | 252 |
| Msa1338900 | AT3G11680.1 | 40.173 | 346 | 194 | 4 | 3 | 339 | 32 | 373 | 4.27e-73 | 239 |
| Msa1338900 | AT3G11680.2 | 40.173 | 346 | 194 | 4 | 3 | 339 | 34 | 375 | 4.73e-73 | 239 |
| Msa1338900 | AT3G18440.1 | 32.341 | 504 | 282 | 13 | 3 | 456 | 75 | 569 | 4.07e-72 | 240 |
| Msa1338900 | AT1G08430.1 | 38.905 | 347 | 196 | 6 | 7 | 339 | 13 | 357 | 1.38e-71 | 236 |
| Msa1338900 | AT2G27240.2 | 39.255 | 349 | 189 | 5 | 7 | 339 | 13 | 354 | 1.81e-69 | 229 |
| Msa1338900 | AT1G18420.1 | 31.936 | 501 | 290 | 13 | 4 | 456 | 80 | 577 | 4.27e-69 | 231 |
| Msa1338900 | AT1G18420.2 | 31.791 | 497 | 288 | 13 | 8 | 456 | 1 | 494 | 1.11e-67 | 225 |
| Msa1338900 | AT2G27240.1 | 37.772 | 368 | 194 | 6 | 7 | 339 | 13 | 380 | 1.20e-66 | 223 |
| Msa1338900 | AT2G17470.1 | 29.607 | 483 | 303 | 9 | 7 | 456 | 31 | 509 | 1.86e-64 | 218 |
| Msa1338900 | AT2G17470.2 | 29.607 | 483 | 303 | 9 | 7 | 456 | 53 | 531 | 2.38e-64 | 218 |
| Msa1338900 | AT1G25480.1 | 30.123 | 488 | 302 | 13 | 5 | 456 | 57 | 541 | 1.51e-63 | 216 |
| Msa1338900 | AT1G68600.1 | 29.675 | 492 | 304 | 13 | 5 | 459 | 46 | 532 | 6.65e-61 | 208 |
| Msa1338900 | AT4G17585.1 | 71.667 | 60 | 16 | 1 | 3 | 61 | 35 | 94 | 2.91e-21 | 90.5 |
Find 104 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATAGTTCTTCTTTATATA+AGG | 0.196610 | tig0002782:-9992 | None:intergenic |
| CTTGTAAGAGTTGGGAGTTC+TGG | 0.199314 | tig0002782:-11447 | None:intergenic |
| AATAATGACTTGCCTTCTTA+TGG | 0.217309 | tig0002782:+11824 | Msa1338900:CDS |
| AACAGGCTTTGCAAGCAAAT+TGG | 0.235701 | tig0002782:+10618 | Msa1338900:intron |
| GTTGAATGAGGAAGACAATT+TGG | 0.238099 | tig0002782:+9257 | None:intergenic |
| AAAGAATGGACCACCCTTCT+AGG | 0.250395 | tig0002782:-9298 | None:intergenic |
| TGATACAATTATCAAATTAA+AGG | 0.250489 | tig0002782:-10041 | None:intergenic |
| TGTATCTTTGTTGTATCTAA+TGG | 0.253001 | tig0002782:+9345 | Msa1338900:CDS |
| CACCTCACCTTCTATAGATT+TGG | 0.256739 | tig0002782:-10221 | None:intergenic |
| AGTTCTTCCCCTGACCAATT+TGG | 0.278883 | tig0002782:-10163 | None:intergenic |
| GCCTGTTTGTATTTCCAAAT+TGG | 0.285143 | tig0002782:+10149 | Msa1338900:CDS |
| TTGTTTGCAGTCTGAAATTC+AGG | 0.286362 | tig0002782:+10745 | Msa1338900:CDS |
| GATCACTGGCATTCTTTATT+CGG | 0.298061 | tig0002782:+9603 | Msa1338900:CDS |
| CATAGTTCTTCTTTATATAA+GGG | 0.308076 | tig0002782:-9991 | None:intergenic |
| TCTTTGGATTTGCTTCCAAC+TGG | 0.308611 | tig0002782:-11524 | None:intergenic |
| CTACAACAGTGTAACTAAAA+TGG | 0.318625 | tig0002782:-10712 | None:intergenic |
| TCCTTCAAGCTTTGATATAG+TGG | 0.320167 | tig0002782:-10194 | None:intergenic |
| TTGTTCTCGGAAATGCTCTT+TGG | 0.330117 | tig0002782:-11540 | None:intergenic |
| ATAAAGAAGAACTATGACTA+TGG | 0.360195 | tig0002782:+9998 | Msa1338900:CDS |
| TCTATTTAGTCCTTTGCATA+AGG | 0.376876 | tig0002782:-9558 | None:intergenic |
| ACAGGCTTTGCAAGCAAATT+GGG | 0.389099 | tig0002782:+10619 | Msa1338900:intron |
| TTTGTATTTCCAAATTGGTC+AGG | 0.391446 | tig0002782:+10154 | Msa1338900:CDS |
| AGGAAGACAATTTGGAAGGT+TGG | 0.392414 | tig0002782:+9265 | Msa1338900:CDS |
| ATGTATGAAGTTGAAGAATT+GGG | 0.394893 | tig0002782:+11707 | Msa1338900:CDS |
| TTGTAAGAGTTGGGAGTTCT+GGG | 0.395187 | tig0002782:-11446 | None:intergenic |
| CTTTGGATTTGCTTCCAACT+GGG | 0.400585 | tig0002782:-11523 | None:intergenic |
| TCTTCAAGCTTGTAAGAGTT+GGG | 0.401192 | tig0002782:-11455 | None:intergenic |
| TTCTTCAAGCTTGTAAGAGT+TGG | 0.405902 | tig0002782:-11456 | None:intergenic |
| GTTCGAGCCTAGTAAAAGTT+GGG | 0.406315 | tig0002782:-11405 | None:intergenic |
| GCCTAGTAAAAGTTGGGGTT+GGG | 0.408934 | tig0002782:-11399 | None:intergenic |
| TATGTATGAAGTTGAAGAAT+TGG | 0.411224 | tig0002782:+11706 | Msa1338900:CDS |
| TGGCAGCATCTTGAGTATCT+TGG | 0.414116 | tig0002782:-10644 | None:intergenic |
| TTGGAAAAGATGATCCTAGA+AGG | 0.428022 | tig0002782:+9284 | Msa1338900:CDS |
| CAAAGGACTAAATAGAGGAT+TGG | 0.434235 | tig0002782:+9565 | Msa1338900:CDS |
| CATGACTGTGGTTGTGGTCA+TGG | 0.437773 | tig0002782:+9411 | Msa1338900:CDS |
| GGCTGTCATGACTGTGGTTG+TGG | 0.441242 | tig0002782:+9405 | Msa1338900:CDS |
| AAGAAGTATCAAAAGTACTA+AGG | 0.444292 | tig0002782:+11276 | Msa1338900:CDS |
| TAATGGAGCCATTGTTCAAA+GGG | 0.447359 | tig0002782:+9362 | Msa1338900:CDS |
| GCTTTGATATAGTGGATTTG+TGG | 0.447467 | tig0002782:-10186 | None:intergenic |
| TGTTGAGGCCACAACTTAGT+AGG | 0.449035 | tig0002782:+11591 | Msa1338900:CDS |
| GGATTGGGAACTTTGTTAGC+AGG | 0.453883 | tig0002782:+9581 | Msa1338900:CDS |
| CAAGACCAACTTTCAAAGAA+TGG | 0.458957 | tig0002782:-9312 | None:intergenic |
| ACCAATTTGGAAATACAAAC+AGG | 0.460157 | tig0002782:-10150 | None:intergenic |
| TCCACTATATCAAAGCTTGA+AGG | 0.461364 | tig0002782:+10193 | Msa1338900:CDS |
| CTTAGATTTAGAGTCTAAAA+CGG | 0.461552 | tig0002782:-10457 | None:intergenic |
| AGCCTAGTAAAAGTTGGGGT+TGG | 0.463368 | tig0002782:-11400 | None:intergenic |
| ATCAAAAGTACTAAGGGTAA+TGG | 0.464081 | tig0002782:+11283 | Msa1338900:CDS |
| AAAGGACTAAATAGAGGATT+GGG | 0.468039 | tig0002782:+9566 | Msa1338900:CDS |
| GGGTAATGGCCAACAGCATA+AGG | 0.474387 | tig0002782:+11297 | Msa1338900:CDS |
| GTGGTCCATTCTTTGAAAGT+TGG | 0.480077 | tig0002782:+9307 | Msa1338900:CDS |
| AAGACCAACGCCTATGCATA+TGG | 0.480102 | tig0002782:-10113 | None:intergenic |
| TGTTCGAGCCTAGTAAAAGT+TGG | 0.480883 | tig0002782:-11406 | None:intergenic |
| AACTTTGTTAGCAGGATCAC+TGG | 0.488085 | tig0002782:+9589 | Msa1338900:CDS |
| TTGATAATGTCTGGAGCATT+GGG | 0.488169 | tig0002782:+10074 | Msa1338900:CDS |
| GGATTAGCCAAATCTATAGA+AGG | 0.492362 | tig0002782:+10214 | Msa1338900:CDS |
| AATTATTCTGCTCCATAAGA+AGG | 0.495731 | tig0002782:-11836 | None:intergenic |
| TACACTGTTGTAGCACTACA+TGG | 0.500604 | tig0002782:+10722 | Msa1338900:CDS |
| GTTGATAATGTCTGGAGCAT+TGG | 0.501192 | tig0002782:+10073 | Msa1338900:CDS |
| ATTGTTTGAGAGTATTTGAA+GGG | 0.502348 | tig0002782:-11336 | None:intergenic |
| TCCCCTATCCCTTTGAACAA+TGG | 0.508398 | tig0002782:-9370 | None:intergenic |
| AACGAAGTGAATGCAGCAAA+GGG | 0.509112 | tig0002782:-11650 | None:intergenic |
| CAATGATGCAGTTTCTGTCA+TGG | 0.510953 | tig0002782:+10362 | Msa1338900:intron |
| CGGTATCTTGCAGATGTCCC+TGG | 0.513392 | tig0002782:+9623 | Msa1338900:CDS |
| AGCCATTGTTCAAAGGGATA+GGG | 0.514220 | tig0002782:+9368 | Msa1338900:CDS |
| TTTGGATTTGCTTCCAACTG+GGG | 0.518335 | tig0002782:-11522 | None:intergenic |
| GAGCCATTGTTCAAAGGGAT+AGG | 0.519040 | tig0002782:+9367 | Msa1338900:CDS |
| TGCATTCACTTCGTTGCTAG+TGG | 0.521899 | tig0002782:+11658 | Msa1338900:CDS |
| GTTACCGTGTTGATAATGTC+TGG | 0.522501 | tig0002782:+10065 | Msa1338900:CDS |
| AATGAGGAAGACAATTTGGA+AGG | 0.524375 | tig0002782:+9261 | None:intergenic |
| GATTGTTTGAGAGTATTTGA+AGG | 0.526199 | tig0002782:-11337 | None:intergenic |
| TTATGCAAAGGACTAAATAG+AGG | 0.533332 | tig0002782:+9560 | Msa1338900:CDS |
| TGTATGAAGTTGAAGAATTG+GGG | 0.537748 | tig0002782:+11708 | Msa1338900:CDS |
| TTGTATTTCCAAATTGGTCA+GGG | 0.538163 | tig0002782:+10155 | Msa1338900:CDS |
| GTGGTCATGGAGTTCACTGC+AGG | 0.547514 | tig0002782:+9424 | Msa1338900:CDS |
| AGAAGTATCAAAAGTACTAA+GGG | 0.552208 | tig0002782:+11277 | Msa1338900:CDS |
| CTAATGGAGCCATTGTTCAA+AGG | 0.553954 | tig0002782:+9361 | Msa1338900:CDS |
| AGTGATTGTTGTTCCCCAGT+TGG | 0.554267 | tig0002782:+11509 | Msa1338900:CDS |
| CAACGAAGTGAATGCAGCAA+AGG | 0.559342 | tig0002782:-11651 | None:intergenic |
| GCCATTGTTCAAAGGGATAG+GGG | 0.568486 | tig0002782:+9369 | Msa1338900:CDS |
| GTAGTGCTTCTGAGAACTCA+AGG | 0.568913 | tig0002782:-11628 | None:intergenic |
| TGGCAGCAATATGCAAAAGT+AGG | 0.572216 | tig0002782:+10677 | Msa1338900:CDS |
| TAAATCTAAGGATGAAACAC+TGG | 0.575893 | tig0002782:+10470 | Msa1338900:CDS |
| AGAAGAACATGTACACAAGA+AGG | 0.577236 | tig0002782:+11568 | Msa1338900:CDS |
| GATACTCAAGATGCTGCCAC+AGG | 0.577743 | tig0002782:+10648 | Msa1338900:CDS |
| ATGATAATCCTACTAAGTTG+TGG | 0.580977 | tig0002782:-11599 | None:intergenic |
| GATAGGGGAAAATGCTATGT+GGG | 0.584985 | tig0002782:+9384 | Msa1338900:CDS |
| TTCGAGCCTAGTAAAAGTTG+GGG | 0.596082 | tig0002782:-11404 | None:intergenic |
| CGCATCTATACCATATGCAT+AGG | 0.596530 | tig0002782:+10103 | Msa1338900:CDS |
| TATACCATATGCATAGGCGT+TGG | 0.599123 | tig0002782:+10109 | Msa1338900:CDS |
| GATGCTGCCACAGGATCCCA+TGG | 0.602281 | tig0002782:+10657 | Msa1338900:CDS |
| GGATAGGGGAAAATGCTATG+TGG | 0.611521 | tig0002782:+9383 | Msa1338900:CDS |
| ATAAGGGATGAATCTGACAT+AGG | 0.613359 | tig0002782:-9975 | None:intergenic |
| TGGAAAAGATGATCCTAGAA+GGG | 0.623581 | tig0002782:+9285 | Msa1338900:CDS |
| TTCGTTGCTAGTGGAGATCG+TGG | 0.624237 | tig0002782:+11667 | Msa1338900:CDS |
| TATAGATCACGTATTGACCT+CGG | 0.624873 | tig0002782:-11227 | None:intergenic |
| ATTGCTGCCATGGGATCCTG+TGG | 0.629583 | tig0002782:-10664 | None:intergenic |
| AGCAAATGATGATTCATCTG+AGG | 0.634254 | tig0002782:+10410 | Msa1338900:CDS |
| TGTATTTCCAAATTGGTCAG+GGG | 0.647968 | tig0002782:+10156 | Msa1338900:CDS |
| ATGTACACAAGAAGGTGTTG+AGG | 0.684367 | tig0002782:+11576 | Msa1338900:CDS |
| AAAAGATGATCCTAGAAGGG+TGG | 0.690795 | tig0002782:+9288 | Msa1338900:CDS |
| TGCTCCAGACATTATCAACA+CGG | 0.699701 | tig0002782:-10069 | None:intergenic |
| TATGTGGGCTGTCATGACTG+TGG | 0.700236 | tig0002782:+9399 | Msa1338900:CDS |
| TCTCATTTACAAGTGCTACG+AGG | 0.756572 | tig0002782:+10434 | Msa1338900:CDS |
| TATGATTCATGAAGACACCG+AGG | 0.800142 | tig0002782:+11210 | Msa1338900:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAAAATAGAAG+GGG | - | tig0002782:10540-10559 | None:intergenic | 10.0% |
| !! | CAAAAAAATAAAAAAATAGA+AGG | - | tig0002782:10542-10561 | None:intergenic | 10.0% |
| !! | TAAAATAATATGTAAGTTAA+AGG | - | tig0002782:11188-11207 | None:intergenic | 10.0% |
| !! | TATTCTTACTAATGAATAAT+CGG | - | tig0002782:9829-9848 | None:intergenic | 15.0% |
| !! | TGATACAATTATCAAATTAA+AGG | - | tig0002782:10044-10063 | None:intergenic | 15.0% |
| !! | ATATTCAATTATAAAGATTG+AGG | - | tig0002782:10337-10356 | None:intergenic | 15.0% |
| !!! | TTATCAACTATATTCATTTT+TGG | - | tig0002782:11806-11825 | None:intergenic | 15.0% |
| !!! | ATTTTTCATGCAATTTTCAT+CGG | + | tig0002782:9650-9669 | Msa1338900:CDS | 20.0% |
| !! | ATTCTTACTAATGAATAATC+GGG | - | tig0002782:9828-9847 | None:intergenic | 20.0% |
| !! | TTATTCATTAGTAAGAATAG+AGG | + | tig0002782:9830-9849 | Msa1338900:intron | 20.0% |
| !! | CATAGTTCTTCTTTATATAA+GGG | - | tig0002782:9994-10013 | None:intergenic | 20.0% |
| !! | TCATAGTTCTTCTTTATATA+AGG | - | tig0002782:9995-10014 | None:intergenic | 20.0% |
| !!! | AACTTAAGCAATTTTCTTTA+AGG | - | tig0002782:10278-10297 | None:intergenic | 20.0% |
| !! | ATACTTTACTTGACAAAAAA+AGG | - | tig0002782:10507-10526 | None:intergenic | 20.0% |
| !!! | TGAAAAAGTATATCAGAAAT+TGG | + | tig0002782:10560-10579 | Msa1338900:intron | 20.0% |
| !!! | GAAAGTCATTTTTAAACTAA+AGG | - | tig0002782:11144-11163 | None:intergenic | 20.0% |
| !!! | ATGACTTTCTTATTTGATTT+TGG | + | tig0002782:11155-11174 | Msa1338900:intron | 20.0% |
| !! | TGTATCTTTGTTGTATCTAA+TGG | + | tig0002782:9345-9364 | Msa1338900:CDS | 25.0% |
| ! | AACTTCATAGGTATTAATGA+AGG | + | tig0002782:9512-9531 | Msa1338900:intron | 25.0% |
| ! | AAGGATCAATTATGATTGTA+GGG | + | tig0002782:9531-9550 | Msa1338900:intron | 25.0% |
| ! | TTCTTACTAATGAATAATCG+GGG | - | tig0002782:9827-9846 | None:intergenic | 25.0% |
| ! | ATAAAGAAGAACTATGACTA+TGG | + | tig0002782:9998-10017 | Msa1338900:CDS | 25.0% |
| !! | CTTAGATTTAGAGTCTAAAA+CGG | - | tig0002782:10460-10479 | None:intergenic | 25.0% |
| ! | AATCAAAAAAATGCAGCTAT+CGG | - | tig0002782:10810-10829 | None:intergenic | 25.0% |
| ! | TTAATTCCTAGTCATACAAA+TGG | + | tig0002782:10851-10870 | Msa1338900:intron | 25.0% |
| !!! | AAGAAGTATCAAAAGTACTA+AGG | + | tig0002782:11276-11295 | Msa1338900:CDS | 25.0% |
| !!! | AGAAGTATCAAAAGTACTAA+GGG | + | tig0002782:11277-11296 | Msa1338900:CDS | 25.0% |
| !!! | ATTGTTTGAGAGTATTTGAA+GGG | - | tig0002782:11339-11358 | None:intergenic | 25.0% |
| ! | TATGTATGAAGTTGAAGAAT+TGG | + | tig0002782:11706-11725 | Msa1338900:CDS | 25.0% |
| ! | ATGTATGAAGTTGAAGAATT+GGG | + | tig0002782:11707-11726 | Msa1338900:CDS | 25.0% |
| GAAGGATCAATTATGATTGT+AGG | + | tig0002782:9530-9549 | Msa1338900:intron | 30.0% | |
| AGGATCAATTATGATTGTAG+GGG | + | tig0002782:9532-9551 | Msa1338900:intron | 30.0% | |
| TCTATTTAGTCCTTTGCATA+AGG | - | tig0002782:9561-9580 | None:intergenic | 30.0% | |
| TTATGCAAAGGACTAAATAG+AGG | + | tig0002782:9560-9579 | Msa1338900:CDS | 30.0% | |
| AAAGGACTAAATAGAGGATT+GGG | + | tig0002782:9566-9585 | Msa1338900:CDS | 30.0% | |
| TTGCATGAAAAATTTGACCA+GGG | - | tig0002782:9643-9662 | None:intergenic | 30.0% | |
| ATTGCATGAAAAATTTGACC+AGG | - | tig0002782:9644-9663 | None:intergenic | 30.0% | |
| AAATGCACTGTTAATAAACC+AGG | - | tig0002782:9714-9733 | None:intergenic | 30.0% | |
| AATTATGAGAGAAGCTCAAT+TGG | + | tig0002782:9767-9786 | Msa1338900:intron | 30.0% | |
| !! | AATCGGGGTTTTAATATCTT+TGG | - | tig0002782:9812-9831 | None:intergenic | 30.0% |
| ! | AAATTTTATGTCCTGTGACT+CGG | + | tig0002782:9898-9917 | Msa1338900:intron | 30.0% |
| ACCAATTTGGAAATACAAAC+AGG | - | tig0002782:10153-10172 | None:intergenic | 30.0% | |
| TTTGTATTTCCAAATTGGTC+AGG | + | tig0002782:10154-10173 | Msa1338900:CDS | 30.0% | |
| TTGTATTTCCAAATTGGTCA+GGG | + | tig0002782:10155-10174 | Msa1338900:CDS | 30.0% | |
| !! | CGTTTTAGACTCTAAATCTA+AGG | + | tig0002782:10458-10477 | Msa1338900:CDS | 30.0% |
| TAAATCTAAGGATGAAACAC+TGG | + | tig0002782:10470-10489 | Msa1338900:CDS | 30.0% | |
| CTCATTGTTTCGAAATAAAC+AGG | + | tig0002782:10601-10620 | Msa1338900:intron | 30.0% | |
| CTACAACAGTGTAACTAAAA+TGG | - | tig0002782:10715-10734 | None:intergenic | 30.0% | |
| ATCAAAAAAATGCAGCTATC+GGG | - | tig0002782:10809-10828 | None:intergenic | 30.0% | |
| CAATTACCATTTGTATGACT+AGG | - | tig0002782:10860-10879 | None:intergenic | 30.0% | |
| ! | GATGAATCTTATTTGACAAG+TGG | - | tig0002782:10950-10969 | None:intergenic | 30.0% |
| AAGATTCATCATTTAGATCC+TGG | + | tig0002782:10960-10979 | Msa1338900:intron | 30.0% | |
| ! | TGTGCTATTAATAAGATCAC+AGG | - | tig0002782:10990-11009 | None:intergenic | 30.0% |
| GTGATCTTATTAATAGCACA+TGG | + | tig0002782:10990-11009 | Msa1338900:intron | 30.0% | |
| TAGCATCTGAATAATGTTCA+AGG | + | tig0002782:11058-11077 | Msa1338900:intron | 30.0% | |
| !! | ATCAAAAGTACTAAGGGTAA+TGG | + | tig0002782:11283-11302 | Msa1338900:CDS | 30.0% |
| !! | GATTGTTTGAGAGTATTTGA+AGG | - | tig0002782:11340-11359 | None:intergenic | 30.0% |
| !! | GTTCTTCTTTTGTTTGTTCT+CGG | - | tig0002782:11556-11575 | None:intergenic | 30.0% |
| ATGATAATCCTACTAAGTTG+TGG | - | tig0002782:11602-11621 | None:intergenic | 30.0% | |
| TGTATGAAGTTGAAGAATTG+GGG | + | tig0002782:11708-11727 | Msa1338900:CDS | 30.0% | |
| ! | AATAATGACTTGCCTTCTTA+TGG | + | tig0002782:11824-11843 | Msa1338900:CDS | 30.0% |
| TTGGAAAAGATGATCCTAGA+AGG | + | tig0002782:9284-9303 | Msa1338900:CDS | 35.0% | |
| TGGAAAAGATGATCCTAGAA+GGG | + | tig0002782:9285-9304 | Msa1338900:CDS | 35.0% | |
| CAAGACCAACTTTCAAAGAA+TGG | - | tig0002782:9315-9334 | None:intergenic | 35.0% | |
| TAATGGAGCCATTGTTCAAA+GGG | + | tig0002782:9362-9381 | Msa1338900:CDS | 35.0% | |
| GGATCAATTATGATTGTAGG+GGG | + | tig0002782:9533-9552 | Msa1338900:intron | 35.0% | |
| CAAAGGACTAAATAGAGGAT+TGG | + | tig0002782:9565-9584 | Msa1338900:CDS | 35.0% | |
| GATCACTGGCATTCTTTATT+CGG | + | tig0002782:9603-9622 | Msa1338900:CDS | 35.0% | |
| !!! | GGTGCTGCAGTTTTTATTTT+AGG | + | tig0002782:9671-9690 | Msa1338900:intron | 35.0% |
| ATAAGGGATGAATCTGACAT+AGG | - | tig0002782:9978-9997 | None:intergenic | 35.0% | |
| !! | TTGATAATGTCTGGAGCATT+GGG | + | tig0002782:10074-10093 | Msa1338900:CDS | 35.0% |
| GCCTGTTTGTATTTCCAAAT+TGG | + | tig0002782:10149-10168 | Msa1338900:CDS | 35.0% | |
| TGTATTTCCAAATTGGTCAG+GGG | + | tig0002782:10156-10175 | Msa1338900:CDS | 35.0% | |
| !! | GCTTTGATATAGTGGATTTG+TGG | - | tig0002782:10189-10208 | None:intergenic | 35.0% |
| TCCACTATATCAAAGCTTGA+AGG | + | tig0002782:10193-10212 | Msa1338900:CDS | 35.0% | |
| ! | TCCTTCAAGCTTTGATATAG+TGG | - | tig0002782:10197-10216 | None:intergenic | 35.0% |
| !! | GGATTAGCCAAATCTATAGA+AGG | + | tig0002782:10214-10233 | Msa1338900:CDS | 35.0% |
| ! | TCTTTAAGGAAGTCATGATC+TGG | - | tig0002782:10264-10283 | None:intergenic | 35.0% |
| AGCAAATGATGATTCATCTG+AGG | + | tig0002782:10410-10429 | Msa1338900:CDS | 35.0% | |
| ! | TTGTTTGCAGTCTGAAATTC+AGG | + | tig0002782:10745-10764 | Msa1338900:CDS | 35.0% |
| AATAAGATCACAGGTAATCC+AGG | - | tig0002782:10981-11000 | None:intergenic | 35.0% | |
| ! | TATAGATCACGTATTGACCT+CGG | - | tig0002782:11230-11249 | None:intergenic | 35.0% |
| !!! | ATGCTTTTTCCTTATGCTGT+TGG | - | tig0002782:11309-11328 | None:intergenic | 35.0% |
| TCTTCAAGCTTGTAAGAGTT+GGG | - | tig0002782:11458-11477 | None:intergenic | 35.0% | |
| TTCTTCAAGCTTGTAAGAGT+TGG | - | tig0002782:11459-11478 | None:intergenic | 35.0% | |
| AGAAGAACATGTACACAAGA+AGG | + | tig0002782:11568-11587 | Msa1338900:CDS | 35.0% | |
| AGGAAGACAATTTGGAAGGT+TGG | + | tig0002782:9265-9284 | Msa1338900:CDS | 40.0% | |
| AAAAGATGATCCTAGAAGGG+TGG | + | tig0002782:9288-9307 | Msa1338900:CDS | 40.0% | |
| ! | GTGGTCCATTCTTTGAAAGT+TGG | + | tig0002782:9307-9326 | Msa1338900:CDS | 40.0% |
| CTAATGGAGCCATTGTTCAA+AGG | + | tig0002782:9361-9380 | Msa1338900:CDS | 40.0% | |
| AGCCATTGTTCAAAGGGATA+GGG | + | tig0002782:9368-9387 | Msa1338900:CDS | 40.0% | |
| GATAGGGGAAAATGCTATGT+GGG | + | tig0002782:9384-9403 | Msa1338900:CDS | 40.0% | |
| GTGCTTAGACACAACTTCAT+AGG | + | tig0002782:9500-9519 | Msa1338900:intron | 40.0% | |
| AACTTTGTTAGCAGGATCAC+TGG | + | tig0002782:9589-9608 | Msa1338900:CDS | 40.0% | |
| !! | GCAAGCATATTATTGACTCC+TGG | + | tig0002782:9693-9712 | Msa1338900:intron | 40.0% |
| !! | CGGGGTTTTAATATCTTTGG+TGG | - | tig0002782:9809-9828 | None:intergenic | 40.0% |
| !! | GTTACCGTGTTGATAATGTC+TGG | + | tig0002782:10065-10084 | Msa1338900:CDS | 40.0% |
| TGCTCCAGACATTATCAACA+CGG | - | tig0002782:10072-10091 | None:intergenic | 40.0% | |
| !! | GTTGATAATGTCTGGAGCAT+TGG | + | tig0002782:10073-10092 | Msa1338900:CDS | 40.0% |
| CGCATCTATACCATATGCAT+AGG | + | tig0002782:10103-10122 | Msa1338900:CDS | 40.0% | |
| TATACCATATGCATAGGCGT+TGG | + | tig0002782:10109-10128 | Msa1338900:CDS | 40.0% | |
| AGCCAAATCTATAGAAGGTG+AGG | + | tig0002782:10219-10238 | Msa1338900:intron | 40.0% | |
| CACCTCACCTTCTATAGATT+TGG | - | tig0002782:10224-10243 | None:intergenic | 40.0% | |
| ! | GAGGTGAACTTTGAGAAACA+AGG | + | tig0002782:10238-10257 | Msa1338900:intron | 40.0% |
| CAATGATGCAGTTTCTGTCA+TGG | + | tig0002782:10362-10381 | Msa1338900:intron | 40.0% | |
| TCTCATTTACAAGTGCTACG+AGG | + | tig0002782:10434-10453 | Msa1338900:CDS | 40.0% | |
| AACAGGCTTTGCAAGCAAAT+TGG | + | tig0002782:10618-10637 | Msa1338900:intron | 40.0% | |
| ACAGGCTTTGCAAGCAAATT+GGG | + | tig0002782:10619-10638 | Msa1338900:intron | 40.0% | |
| ! | CTTTTGCATATTGCTGCCAT+GGG | - | tig0002782:10676-10695 | None:intergenic | 40.0% |
| ! | ACTTTTGCATATTGCTGCCA+TGG | - | tig0002782:10677-10696 | None:intergenic | 40.0% |
| TGGCAGCAATATGCAAAAGT+AGG | + | tig0002782:10677-10696 | Msa1338900:CDS | 40.0% | |
| TACACTGTTGTAGCACTACA+TGG | + | tig0002782:10722-10741 | Msa1338900:CDS | 40.0% | |
| ! | TCGGTGTCTTCATGAATCAT+AGG | - | tig0002782:11211-11230 | None:intergenic | 40.0% |
| TATGATTCATGAAGACACCG+AGG | + | tig0002782:11210-11229 | Msa1338900:intron | 40.0% | |
| !! | GGGATTTTAACACACTGTCA+AGG | - | tig0002782:11382-11401 | None:intergenic | 40.0% |
| TTCGAGCCTAGTAAAAGTTG+GGG | - | tig0002782:11407-11426 | None:intergenic | 40.0% | |
| GTTCGAGCCTAGTAAAAGTT+GGG | - | tig0002782:11408-11427 | None:intergenic | 40.0% | |
| TGTTCGAGCCTAGTAAAAGT+TGG | - | tig0002782:11409-11428 | None:intergenic | 40.0% | |
| ! | CTTTTACTAGGCTCGAACAA+TGG | + | tig0002782:11410-11429 | Msa1338900:CDS | 40.0% |
| TTGTAAGAGTTGGGAGTTCT+GGG | - | tig0002782:11449-11468 | None:intergenic | 40.0% | |
| ! | TTTGGATTTGCTTCCAACTG+GGG | - | tig0002782:11525-11544 | None:intergenic | 40.0% |
| ! | CTTTGGATTTGCTTCCAACT+GGG | - | tig0002782:11526-11545 | None:intergenic | 40.0% |
| ! | TCTTTGGATTTGCTTCCAAC+TGG | - | tig0002782:11527-11546 | None:intergenic | 40.0% |
| TTGTTCTCGGAAATGCTCTT+TGG | - | tig0002782:11543-11562 | None:intergenic | 40.0% | |
| !! | ATGTACACAAGAAGGTGTTG+AGG | + | tig0002782:11576-11595 | Msa1338900:CDS | 40.0% |
| AACGAAGTGAATGCAGCAAA+GGG | - | tig0002782:11653-11672 | None:intergenic | 40.0% | |
| AAAGAATGGACCACCCTTCT+AGG | - | tig0002782:9301-9320 | None:intergenic | 45.0% | |
| GAGCCATTGTTCAAAGGGAT+AGG | + | tig0002782:9367-9386 | Msa1338900:CDS | 45.0% | |
| GCCATTGTTCAAAGGGATAG+GGG | + | tig0002782:9369-9388 | Msa1338900:CDS | 45.0% | |
| TCCCCTATCCCTTTGAACAA+TGG | - | tig0002782:9373-9392 | None:intergenic | 45.0% | |
| GGATAGGGGAAAATGCTATG+TGG | + | tig0002782:9383-9402 | Msa1338900:CDS | 45.0% | |
| GGATTGGGAACTTTGTTAGC+AGG | + | tig0002782:9581-9600 | Msa1338900:CDS | 45.0% | |
| CTGAGCCATTGCTTCACTAT+TGG | + | tig0002782:9937-9956 | Msa1338900:intron | 45.0% | |
| TCCTGCCAATAGTGAAGCAA+TGG | - | tig0002782:9945-9964 | None:intergenic | 45.0% | |
| AAGACCAACGCCTATGCATA+TGG | - | tig0002782:10116-10135 | None:intergenic | 45.0% | |
| AGTTCTTCCCCTGACCAATT+TGG | - | tig0002782:10166-10185 | None:intergenic | 45.0% | |
| TGGCAGCATCTTGAGTATCT+TGG | - | tig0002782:10647-10666 | None:intergenic | 45.0% | |
| ! | TCCCAACCCCAACTTTTACT+AGG | + | tig0002782:11398-11417 | Msa1338900:CDS | 45.0% |
| GCCTAGTAAAAGTTGGGGTT+GGG | - | tig0002782:11402-11421 | None:intergenic | 45.0% | |
| AGCCTAGTAAAAGTTGGGGT+TGG | - | tig0002782:11403-11422 | None:intergenic | 45.0% | |
| CTTGTAAGAGTTGGGAGTTC+TGG | - | tig0002782:11450-11469 | None:intergenic | 45.0% | |
| ! | AGTGATTGTTGTTCCCCAGT+TGG | + | tig0002782:11509-11528 | Msa1338900:CDS | 45.0% |
| TGTTGAGGCCACAACTTAGT+AGG | + | tig0002782:11591-11610 | Msa1338900:CDS | 45.0% | |
| ! | GTAGTGCTTCTGAGAACTCA+AGG | - | tig0002782:11631-11650 | None:intergenic | 45.0% |
| CAACGAAGTGAATGCAGCAA+AGG | - | tig0002782:11654-11673 | None:intergenic | 45.0% | |
| TGCATTCACTTCGTTGCTAG+TGG | + | tig0002782:11658-11677 | Msa1338900:CDS | 45.0% | |
| !! | AAAAAAATAAAAAAATAGAA+GGG | - | tig0002782:10541-10560 | None:intergenic | 5.0% |
| ! | TATGTGGGCTGTCATGACTG+TGG | + | tig0002782:9399-9418 | Msa1338900:CDS | 50.0% |
| CATGACTGTGGTTGTGGTCA+TGG | + | tig0002782:9411-9430 | Msa1338900:CDS | 50.0% | |
| GTAGGGGGAACCTTATGCAA+AGG | + | tig0002782:9548-9567 | Msa1338900:intron | 50.0% | |
| CATTTGAGAAGCCGAGTCAC+AGG | - | tig0002782:9912-9931 | None:intergenic | 50.0% | |
| GCCATTGCTTCACTATTGGC+AGG | + | tig0002782:9941-9960 | Msa1338900:intron | 50.0% | |
| GATACTCAAGATGCTGCCAC+AGG | + | tig0002782:10648-10667 | Msa1338900:CDS | 50.0% | |
| ! | GGGTAATGGCCAACAGCATA+AGG | + | tig0002782:11297-11316 | Msa1338900:CDS | 50.0% |
| TTCGTTGCTAGTGGAGATCG+TGG | + | tig0002782:11667-11686 | Msa1338900:CDS | 50.0% | |
| GGCTGTCATGACTGTGGTTG+TGG | + | tig0002782:9405-9424 | Msa1338900:CDS | 55.0% | |
| GTGGTCATGGAGTTCACTGC+AGG | + | tig0002782:9424-9443 | Msa1338900:CDS | 55.0% | |
| CGGTATCTTGCAGATGTCCC+TGG | + | tig0002782:9623-9642 | Msa1338900:CDS | 55.0% | |
| ATTGCTGCCATGGGATCCTG+TGG | - | tig0002782:10667-10686 | None:intergenic | 55.0% | |
| GATGCTGCCACAGGATCCCA+TGG | + | tig0002782:10657-10676 | Msa1338900:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0002782 | gene | 9262 | 11856 | 9262 | ID=Msa1338900;Name=Msa1338900 |
| tig0002782 | mRNA | 9262 | 11856 | 9262 | ID=Msa1338900-mRNA-1;Parent=Msa1338900;Name=Msa1338900-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|1|1|6|0|490 |
| tig0002782 | exon | 9262 | 9445 | 9262 | ID=Msa1338900-mRNA-1:exon:1872;Parent=Msa1338900-mRNA-1 |
| tig0002782 | exon | 9552 | 9671 | 9552 | ID=Msa1338900-mRNA-1:exon:1873;Parent=Msa1338900-mRNA-1 |
| tig0002782 | exon | 9963 | 10235 | 9963 | ID=Msa1338900-mRNA-1:exon:1874;Parent=Msa1338900-mRNA-1 |
| tig0002782 | exon | 10373 | 10491 | 10373 | ID=Msa1338900-mRNA-1:exon:1875;Parent=Msa1338900-mRNA-1 |
| tig0002782 | exon | 10623 | 10766 | 10623 | ID=Msa1338900-mRNA-1:exon:1876;Parent=Msa1338900-mRNA-1 |
| tig0002782 | exon | 11224 | 11856 | 11224 | ID=Msa1338900-mRNA-1:exon:1877;Parent=Msa1338900-mRNA-1 |
| tig0002782 | CDS | 9262 | 9445 | 9262 | ID=Msa1338900-mRNA-1:cds;Parent=Msa1338900-mRNA-1 |
| tig0002782 | CDS | 9552 | 9671 | 9552 | ID=Msa1338900-mRNA-1:cds;Parent=Msa1338900-mRNA-1 |
| tig0002782 | CDS | 9963 | 10235 | 9963 | ID=Msa1338900-mRNA-1:cds;Parent=Msa1338900-mRNA-1 |
| tig0002782 | CDS | 10373 | 10491 | 10373 | ID=Msa1338900-mRNA-1:cds;Parent=Msa1338900-mRNA-1 |
| tig0002782 | CDS | 10623 | 10766 | 10623 | ID=Msa1338900-mRNA-1:cds;Parent=Msa1338900-mRNA-1 |
| tig0002782 | CDS | 11224 | 11856 | 11224 | ID=Msa1338900-mRNA-1:cds;Parent=Msa1338900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
