Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355630 | XP_013470402.1 | 94.747 | 533 | 14 | 3 | 1 | 520 | 1 | 532 | 0.0 | 1033 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355630 | sp|O49696|ALMTC_ARATH | 57.170 | 530 | 170 | 10 | 23 | 504 | 29 | 549 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355630 | A0A072W2H7 | 94.747 | 533 | 14 | 3 | 1 | 520 | 1 | 532 | 0.0 | 1033 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0115630 | Msa1355630 | 0.803878 | 2.825526e-49 | -8.615850e-47 |
| Msa1338900 | Msa1355630 | 0.844235 | 8.572502e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355630 | MtrunA17_Chr1g0212251 | 94.747 | 533 | 14 | 3 | 1 | 520 | 1 | 532 | 0.0 | 1033 |
| Msa1355630 | MtrunA17_Chr1g0212201 | 82.397 | 534 | 78 | 5 | 1 | 520 | 5 | 536 | 0.0 | 895 |
| Msa1355630 | MtrunA17_Chr1g0212291 | 79.626 | 535 | 88 | 6 | 3 | 519 | 4 | 535 | 0.0 | 843 |
| Msa1355630 | MtrunA17_Chr4g0054741 | 59.962 | 527 | 192 | 7 | 5 | 520 | 16 | 534 | 0.0 | 582 |
| Msa1355630 | MtrunA17_Chr5g0400471 | 55.532 | 470 | 160 | 8 | 93 | 520 | 3 | 465 | 4.10e-155 | 450 |
| Msa1355630 | MtrunA17_Chr4g0054771 | 58.270 | 393 | 151 | 6 | 132 | 520 | 3 | 386 | 1.97e-148 | 430 |
| Msa1355630 | MtrunA17_Chr1g0188871 | 41.775 | 383 | 204 | 6 | 10 | 383 | 23 | 395 | 4.02e-95 | 297 |
| Msa1355630 | MtrunA17_Chr1g0188881 | 40.634 | 347 | 190 | 5 | 33 | 369 | 48 | 388 | 7.04e-87 | 276 |
| Msa1355630 | MtrunA17_Chr4g0025591 | 42.216 | 334 | 177 | 3 | 23 | 342 | 20 | 351 | 6.36e-84 | 268 |
| Msa1355630 | MtrunA17_Chr7g0267471 | 41.908 | 346 | 189 | 3 | 32 | 369 | 37 | 378 | 2.84e-79 | 256 |
| Msa1355630 | MtrunA17_Chr7g0259731 | 40.256 | 313 | 171 | 5 | 42 | 343 | 61 | 368 | 6.84e-77 | 248 |
| Msa1355630 | MtrunA17_Chr2g0321971 | 41.009 | 317 | 173 | 3 | 37 | 343 | 37 | 349 | 1.14e-74 | 243 |
| Msa1355630 | MtrunA17_Chr8g0390931 | 32.591 | 494 | 280 | 13 | 37 | 486 | 59 | 543 | 8.34e-74 | 244 |
| Msa1355630 | MtrunA17_Chr6g0484691 | 31.731 | 520 | 307 | 12 | 14 | 486 | 58 | 576 | 1.76e-71 | 239 |
| Msa1355630 | MtrunA17_Chr2g0321961 | 37.166 | 374 | 218 | 7 | 11 | 371 | 8 | 377 | 7.12e-70 | 230 |
| Msa1355630 | MtrunA17_Chr1g0210101 | 33.125 | 480 | 285 | 12 | 35 | 486 | 111 | 582 | 1.19e-67 | 228 |
| Msa1355630 | MtrunA17_Chr8g0390921 | 29.518 | 498 | 301 | 10 | 36 | 486 | 59 | 553 | 2.02e-63 | 216 |
| Msa1355630 | MtrunA17_Chr8g0390901 | 28.311 | 438 | 271 | 8 | 91 | 486 | 9 | 445 | 2.57e-54 | 189 |
| Msa1355630 | MtrunA17_Chr4g0054761 | 64.122 | 131 | 46 | 1 | 5 | 134 | 16 | 146 | 4.40e-35 | 129 |
| Msa1355630 | MtrunA17_Chr5g0400481 | 60.256 | 78 | 31 | 0 | 15 | 92 | 35 | 112 | 1.88e-25 | 100 |
| Msa1355630 | MtrunA17_Chr1g0209601 | 81.633 | 49 | 8 | 1 | 10 | 58 | 5 | 52 | 1.50e-18 | 79.7 |
| Msa1355630 | MtrunA17_Chr8g0390911 | 41.333 | 75 | 43 | 1 | 19 | 92 | 46 | 120 | 1.64e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355630 | AT4G17970.1 | 57.170 | 530 | 170 | 10 | 23 | 504 | 29 | 549 | 0.0 | 570 |
| Msa1355630 | AT5G46610.1 | 56.395 | 516 | 187 | 10 | 23 | 504 | 24 | 535 | 0.0 | 554 |
| Msa1355630 | AT5G46600.1 | 55.221 | 498 | 186 | 7 | 27 | 487 | 29 | 526 | 0.0 | 520 |
| Msa1355630 | AT5G46610.2 | 52.132 | 516 | 185 | 11 | 23 | 504 | 24 | 511 | 4.62e-171 | 493 |
| Msa1355630 | AT5G46610.3 | 51.081 | 509 | 178 | 10 | 23 | 504 | 24 | 488 | 6.88e-164 | 474 |
| Msa1355630 | AT4G00910.1 | 35.270 | 482 | 251 | 10 | 24 | 494 | 46 | 477 | 2.41e-96 | 301 |
| Msa1355630 | AT1G08440.1 | 40.401 | 349 | 185 | 6 | 37 | 369 | 13 | 354 | 2.50e-77 | 252 |
| Msa1355630 | AT3G11680.1 | 38.692 | 367 | 205 | 5 | 19 | 369 | 11 | 373 | 1.76e-73 | 241 |
| Msa1355630 | AT3G11680.2 | 38.692 | 367 | 205 | 5 | 19 | 369 | 13 | 375 | 1.93e-73 | 241 |
| Msa1355630 | AT3G18440.1 | 32.341 | 504 | 282 | 13 | 33 | 486 | 75 | 569 | 8.47e-72 | 240 |
| Msa1355630 | AT1G08430.1 | 38.905 | 347 | 196 | 6 | 37 | 369 | 13 | 357 | 3.44e-71 | 235 |
| Msa1355630 | AT1G18420.1 | 31.107 | 524 | 300 | 14 | 19 | 486 | 59 | 577 | 4.33e-69 | 232 |
| Msa1355630 | AT2G27240.2 | 39.377 | 353 | 186 | 6 | 37 | 374 | 13 | 352 | 6.99e-69 | 229 |
| Msa1355630 | AT1G18420.2 | 31.791 | 497 | 288 | 13 | 38 | 486 | 1 | 494 | 2.72e-67 | 225 |
| Msa1355630 | AT2G27240.1 | 37.903 | 372 | 191 | 7 | 37 | 374 | 13 | 378 | 5.33e-66 | 222 |
| Msa1355630 | AT2G17470.1 | 29.607 | 483 | 303 | 9 | 37 | 486 | 31 | 509 | 5.51e-64 | 218 |
| Msa1355630 | AT2G17470.2 | 29.607 | 483 | 303 | 9 | 37 | 486 | 53 | 531 | 7.35e-64 | 218 |
| Msa1355630 | AT1G25480.1 | 29.492 | 512 | 311 | 14 | 11 | 486 | 44 | 541 | 9.23e-64 | 217 |
| Msa1355630 | AT1G68600.1 | 29.675 | 492 | 304 | 13 | 35 | 489 | 46 | 532 | 1.28e-60 | 209 |
| Msa1355630 | AT4G17585.1 | 65.714 | 70 | 19 | 2 | 23 | 91 | 29 | 94 | 3.61e-22 | 93.2 |
Find 110 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATAGTTCTTCTTTATATA+AGG | 0.196610 | tig0014953:-10331 | None:intergenic |
| CTTGTAAGAGTTGGGAGTTC+TGG | 0.199314 | tig0014953:-11785 | None:intergenic |
| AATAATGACTTGCCTTCTTA+TGG | 0.217309 | tig0014953:+12162 | Msa1355630:CDS |
| AACAGGCTTTGCAAGCAAAT+TGG | 0.235701 | tig0014953:+10957 | Msa1355630:intron |
| GTTCAATGAGGAAGACAATT+TGG | 0.238099 | tig0014953:+9596 | Msa1355630:CDS |
| AAAGAATGGACCACCCTTCT+AGG | 0.250395 | tig0014953:-9637 | None:intergenic |
| TGATACAATTATCAAATTAA+AGG | 0.250489 | tig0014953:-10380 | None:intergenic |
| TGTATCTTTGTTGTATCTAA+TGG | 0.253001 | tig0014953:+9684 | Msa1355630:CDS |
| CACCTCACCTTCTATAGATT+TGG | 0.256739 | tig0014953:-10560 | None:intergenic |
| AGTTCTTCCCCTGACCAATT+TGG | 0.278883 | tig0014953:-10502 | None:intergenic |
| GCCTGTTTGTATTTCCAAAT+TGG | 0.285143 | tig0014953:+10488 | Msa1355630:CDS |
| TTGTTTGCAGTCTGAAATTC+AGG | 0.286362 | tig0014953:+11084 | Msa1355630:CDS |
| GATCACTGGCATTCTTTATT+CGG | 0.298061 | tig0014953:+9942 | Msa1355630:CDS |
| CATAGTTCTTCTTTATATAA+GGG | 0.308076 | tig0014953:-10330 | None:intergenic |
| TCTTTGGATTTGCTTCCAAC+TGG | 0.308611 | tig0014953:-11862 | None:intergenic |
| CTACAACAGTGTAACTAAAA+TGG | 0.318625 | tig0014953:-11051 | None:intergenic |
| TCCTTCAAGCTTTGATATAG+TGG | 0.320167 | tig0014953:-10533 | None:intergenic |
| TTGTTCTCGGAAATGCTCTT+TGG | 0.330117 | tig0014953:-11878 | None:intergenic |
| ATAAAGAAGAACTATGACTA+TGG | 0.360195 | tig0014953:+10337 | Msa1355630:CDS |
| TATAAAGTGAAAAGATTTCC+AGG | 0.365738 | tig0014953:+9574 | Msa1355630:CDS |
| TCTATTTAGTCCTTTGCATA+AGG | 0.376876 | tig0014953:-9897 | None:intergenic |
| ACAGGCTTTGCAAGCAAATT+GGG | 0.389099 | tig0014953:+10958 | Msa1355630:intron |
| TTTGTATTTCCAAATTGGTC+AGG | 0.391446 | tig0014953:+10493 | Msa1355630:CDS |
| AGGAAGACAATTTGGAAGGT+TGG | 0.392414 | tig0014953:+9604 | Msa1355630:CDS |
| ATGTATGAAGTTGAAGAATT+GGG | 0.394893 | tig0014953:+12045 | Msa1355630:CDS |
| TTGTAAGAGTTGGGAGTTCT+GGG | 0.395187 | tig0014953:-11784 | None:intergenic |
| CTTTGGATTTGCTTCCAACT+GGG | 0.400585 | tig0014953:-11861 | None:intergenic |
| TCTTCAAGCTTGTAAGAGTT+GGG | 0.401192 | tig0014953:-11793 | None:intergenic |
| TTCTTCAAGCTTGTAAGAGT+TGG | 0.405902 | tig0014953:-11794 | None:intergenic |
| GTTCGAGCCTAGTAAAAGTT+GGG | 0.406315 | tig0014953:-11743 | None:intergenic |
| GCCTAGTAAAAGTTGGGGTT+GGG | 0.408934 | tig0014953:-11737 | None:intergenic |
| TATGTATGAAGTTGAAGAAT+TGG | 0.411224 | tig0014953:+12044 | Msa1355630:CDS |
| TGGCAGCATCTTGAGTATCT+TGG | 0.414116 | tig0014953:-10983 | None:intergenic |
| TTGGAAAAGATGATCCTAGA+AGG | 0.428022 | tig0014953:+9623 | Msa1355630:CDS |
| CAAAGGACTAAATAGAGGAT+TGG | 0.434235 | tig0014953:+9904 | Msa1355630:CDS |
| CATGACTGTGGTTGTGGTCA+TGG | 0.437773 | tig0014953:+9750 | Msa1355630:CDS |
| GGCTGTCATGACTGTGGTTG+TGG | 0.441242 | tig0014953:+9744 | Msa1355630:CDS |
| AAGAAGTATCAAAAGTACTA+AGG | 0.444292 | tig0014953:+11614 | Msa1355630:CDS |
| TAATGGAGCCATTGTTCAAA+GGG | 0.447359 | tig0014953:+9701 | Msa1355630:CDS |
| GCTTTGATATAGTGGATTTG+TGG | 0.447467 | tig0014953:-10525 | None:intergenic |
| TGTTGAGGCCACAACTTAGT+AGG | 0.449035 | tig0014953:+11929 | Msa1355630:CDS |
| GGATTGGGAACTTTGTTAGC+AGG | 0.453883 | tig0014953:+9920 | Msa1355630:CDS |
| CACTTCGTTGCTAGTGGAGA+TGG | 0.457941 | tig0014953:+12002 | Msa1355630:CDS |
| CAAGACCAACTTTCAAAGAA+TGG | 0.458957 | tig0014953:-9651 | None:intergenic |
| ACCAATTTGGAAATACAAAC+AGG | 0.460157 | tig0014953:-10489 | None:intergenic |
| TCCACTATATCAAAGCTTGA+AGG | 0.461364 | tig0014953:+10532 | Msa1355630:CDS |
| CTTAGATTTAGAGTCTAAAA+CGG | 0.461552 | tig0014953:-10796 | None:intergenic |
| AGCCTAGTAAAAGTTGGGGT+TGG | 0.463368 | tig0014953:-11738 | None:intergenic |
| ATCAAAAGTACTAAGGGTAA+TGG | 0.464081 | tig0014953:+11621 | Msa1355630:CDS |
| AAAGGACTAAATAGAGGATT+GGG | 0.468039 | tig0014953:+9905 | Msa1355630:CDS |
| GGGTAATGGCCAACAGCATA+AGG | 0.474387 | tig0014953:+11635 | Msa1355630:CDS |
| GTGGTCCATTCTTTGAAAGT+TGG | 0.480077 | tig0014953:+9646 | Msa1355630:CDS |
| AAGACCAACGCCTATGCATA+TGG | 0.480102 | tig0014953:-10452 | None:intergenic |
| TGTTCGAGCCTAGTAAAAGT+TGG | 0.480883 | tig0014953:-11744 | None:intergenic |
| ATTGTCTTCCTCATTGAACC+TGG | 0.484243 | tig0014953:-9592 | None:intergenic |
| CTATGAGAAGCTCAAGCCAT+TGG | 0.485104 | tig0014953:+9530 | Msa1355630:CDS |
| AACTTTGTTAGCAGGATCAC+TGG | 0.488085 | tig0014953:+9928 | Msa1355630:CDS |
| TTGATAATGTCTGGAGCATT+GGG | 0.488169 | tig0014953:+10413 | Msa1355630:CDS |
| GGATTAGCCAAATCTATAGA+AGG | 0.492362 | tig0014953:+10553 | Msa1355630:CDS |
| AATTATTCTGCTCCATAAGA+AGG | 0.495731 | tig0014953:-12174 | None:intergenic |
| TACACTGTTGTAGCACTACA+TGG | 0.500604 | tig0014953:+11061 | Msa1355630:CDS |
| GTTGATAATGTCTGGAGCAT+TGG | 0.501192 | tig0014953:+10412 | Msa1355630:CDS |
| ATTGTTTGAGAGTATTTGAA+GGG | 0.502348 | tig0014953:-11674 | None:intergenic |
| TCCCCTATCCCTTTGAACAA+TGG | 0.508398 | tig0014953:-9709 | None:intergenic |
| AACGAAGTGAATGCAGCAAA+GGG | 0.509112 | tig0014953:-11988 | None:intergenic |
| CAATGATGCAGTTTCTGTCA+TGG | 0.510953 | tig0014953:+10701 | Msa1355630:intron |
| CGGTATCTTGCAGATGTCCC+TGG | 0.513392 | tig0014953:+9962 | Msa1355630:CDS |
| AGCCATTGTTCAAAGGGATA+GGG | 0.514220 | tig0014953:+9707 | Msa1355630:CDS |
| TTTGGATTTGCTTCCAACTG+GGG | 0.518335 | tig0014953:-11860 | None:intergenic |
| GAGCCATTGTTCAAAGGGAT+AGG | 0.519040 | tig0014953:+9706 | Msa1355630:CDS |
| TGCATTCACTTCGTTGCTAG+TGG | 0.521899 | tig0014953:+11996 | Msa1355630:CDS |
| GTTACCGTGTTGATAATGTC+TGG | 0.522501 | tig0014953:+10404 | Msa1355630:CDS |
| GATTGTTTGAGAGTATTTGA+AGG | 0.526199 | tig0014953:-11675 | None:intergenic |
| TTATGCAAAGGACTAAATAG+AGG | 0.533332 | tig0014953:+9899 | Msa1355630:CDS |
| AATGAGGAAGACAATTTGGA+AGG | 0.534245 | tig0014953:+9600 | Msa1355630:CDS |
| AACTGTAAAATGATTTCCAA+TGG | 0.536056 | tig0014953:-9546 | None:intergenic |
| TGTATGAAGTTGAAGAATTG+GGG | 0.537748 | tig0014953:+12046 | Msa1355630:CDS |
| TTGTATTTCCAAATTGGTCA+GGG | 0.538163 | tig0014953:+10494 | Msa1355630:CDS |
| GTGGTCATGGAGTTCACTGC+AGG | 0.547514 | tig0014953:+9763 | Msa1355630:CDS |
| AGAAGTATCAAAAGTACTAA+GGG | 0.552208 | tig0014953:+11615 | Msa1355630:CDS |
| CTAATGGAGCCATTGTTCAA+AGG | 0.553954 | tig0014953:+9700 | Msa1355630:CDS |
| AGTGATTGTTGTTCCCCAGT+TGG | 0.554267 | tig0014953:+11847 | Msa1355630:CDS |
| CAACGAAGTGAATGCAGCAA+AGG | 0.559342 | tig0014953:-11989 | None:intergenic |
| GCCATTGTTCAAAGGGATAG+GGG | 0.568486 | tig0014953:+9708 | Msa1355630:CDS |
| GTAGTGCTTCTGAGAACTCA+AGG | 0.568913 | tig0014953:-11966 | None:intergenic |
| TGGCAGCAATATGCAAAAGT+AGG | 0.572216 | tig0014953:+11016 | Msa1355630:CDS |
| TAAATCTAAGGATGAAACAC+TGG | 0.575893 | tig0014953:+10809 | Msa1355630:CDS |
| AGAAGAACATGTACACAAGA+AGG | 0.577236 | tig0014953:+11906 | Msa1355630:CDS |
| GATACTCAAGATGCTGCCAC+AGG | 0.577743 | tig0014953:+10987 | Msa1355630:CDS |
| ATGATAATCCTACTAAGTTG+TGG | 0.580977 | tig0014953:-11937 | None:intergenic |
| GATAGGGGAAAATGCTATGT+GGG | 0.584985 | tig0014953:+9723 | Msa1355630:CDS |
| TTCGAGCCTAGTAAAAGTTG+GGG | 0.596082 | tig0014953:-11742 | None:intergenic |
| CGCATCTATACCATATGCAT+AGG | 0.596530 | tig0014953:+10442 | Msa1355630:CDS |
| TATACCATATGCATAGGCGT+TGG | 0.599123 | tig0014953:+10448 | Msa1355630:CDS |
| GATGCTGCCACAGGATCCCA+TGG | 0.602281 | tig0014953:+10996 | Msa1355630:CDS |
| GGATAGGGGAAAATGCTATG+TGG | 0.611521 | tig0014953:+9722 | Msa1355630:CDS |
| ATAAGGGATGAATCTGACAT+AGG | 0.613359 | tig0014953:-10314 | None:intergenic |
| TTCGTTGCTAGTGGAGATGG+TGG | 0.621421 | tig0014953:+12005 | Msa1355630:CDS |
| TGGAAAAGATGATCCTAGAA+GGG | 0.623581 | tig0014953:+9624 | Msa1355630:CDS |
| TATAGATCACGTATTGACCT+CGG | 0.624873 | tig0014953:-11565 | None:intergenic |
| AAAGATTTCCAGGTTCAATG+AGG | 0.626343 | tig0014953:+9584 | Msa1355630:CDS |
| ATTGCTGCCATGGGATCCTG+TGG | 0.629583 | tig0014953:-11003 | None:intergenic |
| AGCAAATGATGATTCATCTG+AGG | 0.634254 | tig0014953:+10749 | Msa1355630:CDS |
| TGTATTTCCAAATTGGTCAG+GGG | 0.647968 | tig0014953:+10495 | Msa1355630:CDS |
| ATGTACACAAGAAGGTGTTG+AGG | 0.684367 | tig0014953:+11914 | Msa1355630:CDS |
| AAAAGATGATCCTAGAAGGG+TGG | 0.690795 | tig0014953:+9627 | Msa1355630:CDS |
| TGCTCCAGACATTATCAACA+CGG | 0.699701 | tig0014953:-10408 | None:intergenic |
| TATGTGGGCTGTCATGACTG+TGG | 0.700236 | tig0014953:+9738 | Msa1355630:CDS |
| TCTCATTTACAAGTGCTACG+AGG | 0.756572 | tig0014953:+10773 | Msa1355630:CDS |
| TATGATTCATGAAGACACCG+AGG | 0.800142 | tig0014953:+11548 | Msa1355630:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAAAATAGAAG+GGG | - | tig0014953:10879-10898 | None:intergenic | 10.0% |
| !! | CAAAAAAATAAAAAAATAGA+AGG | - | tig0014953:10881-10900 | None:intergenic | 10.0% |
| !! | TAAAATAATATGTAAGTTAA+AGG | - | tig0014953:11526-11545 | None:intergenic | 10.0% |
| !! | TATTCTTACTAATGAATAAT+CGG | - | tig0014953:10168-10187 | None:intergenic | 15.0% |
| !! | TGATACAATTATCAAATTAA+AGG | - | tig0014953:10383-10402 | None:intergenic | 15.0% |
| !! | ATATTCAATTATAAAGATTG+AGG | - | tig0014953:10676-10695 | None:intergenic | 15.0% |
| !!! | TTATCAACTATATTCATTTT+TGG | - | tig0014953:12144-12163 | None:intergenic | 15.0% |
| !!! | ATTTTTCATGCAATTTTCAT+CGG | + | tig0014953:9989-10008 | Msa1355630:CDS | 20.0% |
| !! | ATTCTTACTAATGAATAATC+GGG | - | tig0014953:10167-10186 | None:intergenic | 20.0% |
| !! | TTATTCATTAGTAAGAATAG+AGG | + | tig0014953:10169-10188 | Msa1355630:intron | 20.0% |
| !! | CATAGTTCTTCTTTATATAA+GGG | - | tig0014953:10333-10352 | None:intergenic | 20.0% |
| !! | TCATAGTTCTTCTTTATATA+AGG | - | tig0014953:10334-10353 | None:intergenic | 20.0% |
| !!! | AACTTAAGCAATTTTCTTTA+AGG | - | tig0014953:10617-10636 | None:intergenic | 20.0% |
| !! | ATACTTTACTTGACAAAAAA+AGG | - | tig0014953:10846-10865 | None:intergenic | 20.0% |
| !!! | TGAAAAAGTATATCAGAAAT+TGG | + | tig0014953:10899-10918 | Msa1355630:intron | 20.0% |
| !!! | GAAAGTCATTTTTAAACTAA+AGG | - | tig0014953:11482-11501 | None:intergenic | 20.0% |
| !!! | ATGACTTTCTTATTTGATTT+TGG | + | tig0014953:11493-11512 | Msa1355630:intron | 20.0% |
| ! | AACTGTAAAATGATTTCCAA+TGG | - | tig0014953:9549-9568 | None:intergenic | 25.0% |
| ! | TATAAAGTGAAAAGATTTCC+AGG | + | tig0014953:9574-9593 | Msa1355630:CDS | 25.0% |
| !! | TGTATCTTTGTTGTATCTAA+TGG | + | tig0014953:9684-9703 | Msa1355630:CDS | 25.0% |
| ! | AACTTCATAGGTATTAATGA+AGG | + | tig0014953:9851-9870 | Msa1355630:intron | 25.0% |
| ! | AAGGATCAATTATGATTGTA+GGG | + | tig0014953:9870-9889 | Msa1355630:intron | 25.0% |
| ! | TTCTTACTAATGAATAATCG+GGG | - | tig0014953:10166-10185 | None:intergenic | 25.0% |
| ! | ATAAAGAAGAACTATGACTA+TGG | + | tig0014953:10337-10356 | Msa1355630:CDS | 25.0% |
| !! | CTTAGATTTAGAGTCTAAAA+CGG | - | tig0014953:10799-10818 | None:intergenic | 25.0% |
| ! | AATCAAAAAAATGCAGCTAT+CGG | - | tig0014953:11149-11168 | None:intergenic | 25.0% |
| ! | TTAATTCCTAGTCATACAAA+TGG | + | tig0014953:11190-11209 | Msa1355630:intron | 25.0% |
| !!! | AAGAAGTATCAAAAGTACTA+AGG | + | tig0014953:11614-11633 | Msa1355630:CDS | 25.0% |
| !!! | AGAAGTATCAAAAGTACTAA+GGG | + | tig0014953:11615-11634 | Msa1355630:CDS | 25.0% |
| !!! | ATTGTTTGAGAGTATTTGAA+GGG | - | tig0014953:11677-11696 | None:intergenic | 25.0% |
| ! | TATGTATGAAGTTGAAGAAT+TGG | + | tig0014953:12044-12063 | Msa1355630:CDS | 25.0% |
| ! | ATGTATGAAGTTGAAGAATT+GGG | + | tig0014953:12045-12064 | Msa1355630:CDS | 25.0% |
| GAAGGATCAATTATGATTGT+AGG | + | tig0014953:9869-9888 | Msa1355630:intron | 30.0% | |
| AGGATCAATTATGATTGTAG+GGG | + | tig0014953:9871-9890 | Msa1355630:intron | 30.0% | |
| TCTATTTAGTCCTTTGCATA+AGG | - | tig0014953:9900-9919 | None:intergenic | 30.0% | |
| TTATGCAAAGGACTAAATAG+AGG | + | tig0014953:9899-9918 | Msa1355630:CDS | 30.0% | |
| AAAGGACTAAATAGAGGATT+GGG | + | tig0014953:9905-9924 | Msa1355630:CDS | 30.0% | |
| TTGCATGAAAAATTTGACCA+GGG | - | tig0014953:9982-10001 | None:intergenic | 30.0% | |
| ATTGCATGAAAAATTTGACC+AGG | - | tig0014953:9983-10002 | None:intergenic | 30.0% | |
| AAATGCACTGTTAATAAACC+AGG | - | tig0014953:10053-10072 | None:intergenic | 30.0% | |
| AATTATGAGAGAAGCTCAAT+TGG | + | tig0014953:10106-10125 | Msa1355630:intron | 30.0% | |
| !! | AATCGGGGTTTTAATATCTT+TGG | - | tig0014953:10151-10170 | None:intergenic | 30.0% |
| ! | AAATTTTATGTCCTGTGACT+CGG | + | tig0014953:10237-10256 | Msa1355630:intron | 30.0% |
| ACCAATTTGGAAATACAAAC+AGG | - | tig0014953:10492-10511 | None:intergenic | 30.0% | |
| TTTGTATTTCCAAATTGGTC+AGG | + | tig0014953:10493-10512 | Msa1355630:CDS | 30.0% | |
| TTGTATTTCCAAATTGGTCA+GGG | + | tig0014953:10494-10513 | Msa1355630:CDS | 30.0% | |
| !! | CGTTTTAGACTCTAAATCTA+AGG | + | tig0014953:10797-10816 | Msa1355630:CDS | 30.0% |
| TAAATCTAAGGATGAAACAC+TGG | + | tig0014953:10809-10828 | Msa1355630:CDS | 30.0% | |
| CTCATTGTTTCGAAATAAAC+AGG | + | tig0014953:10940-10959 | Msa1355630:intron | 30.0% | |
| CTACAACAGTGTAACTAAAA+TGG | - | tig0014953:11054-11073 | None:intergenic | 30.0% | |
| ATCAAAAAAATGCAGCTATC+GGG | - | tig0014953:11148-11167 | None:intergenic | 30.0% | |
| CAATTACCATTTGTATGACT+AGG | - | tig0014953:11199-11218 | None:intergenic | 30.0% | |
| ! | GATGAATCTTATTTGACAAG+TGG | - | tig0014953:11288-11307 | None:intergenic | 30.0% |
| AAGATTCATCATTTAGATCC+TGG | + | tig0014953:11298-11317 | Msa1355630:intron | 30.0% | |
| ! | TGTGCTATTAATAAGATCAC+AGG | - | tig0014953:11328-11347 | None:intergenic | 30.0% |
| GTGATCTTATTAATAGCACA+TGG | + | tig0014953:11328-11347 | Msa1355630:intron | 30.0% | |
| TAGCATCTGAATAATGTTCA+AGG | + | tig0014953:11396-11415 | Msa1355630:intron | 30.0% | |
| !! | ATCAAAAGTACTAAGGGTAA+TGG | + | tig0014953:11621-11640 | Msa1355630:CDS | 30.0% |
| !! | GATTGTTTGAGAGTATTTGA+AGG | - | tig0014953:11678-11697 | None:intergenic | 30.0% |
| !! | GTTCTTCTTTTGTTTGTTCT+CGG | - | tig0014953:11894-11913 | None:intergenic | 30.0% |
| ATGATAATCCTACTAAGTTG+TGG | - | tig0014953:11940-11959 | None:intergenic | 30.0% | |
| TGTATGAAGTTGAAGAATTG+GGG | + | tig0014953:12046-12065 | Msa1355630:CDS | 30.0% | |
| ! | AATAATGACTTGCCTTCTTA+TGG | + | tig0014953:12162-12181 | Msa1355630:CDS | 30.0% |
| AAAGATTTCCAGGTTCAATG+AGG | + | tig0014953:9584-9603 | Msa1355630:CDS | 35.0% | |
| GTTCAATGAGGAAGACAATT+TGG | + | tig0014953:9596-9615 | Msa1355630:CDS | 35.0% | |
| AATGAGGAAGACAATTTGGA+AGG | + | tig0014953:9600-9619 | Msa1355630:CDS | 35.0% | |
| TTGGAAAAGATGATCCTAGA+AGG | + | tig0014953:9623-9642 | Msa1355630:CDS | 35.0% | |
| TGGAAAAGATGATCCTAGAA+GGG | + | tig0014953:9624-9643 | Msa1355630:CDS | 35.0% | |
| CAAGACCAACTTTCAAAGAA+TGG | - | tig0014953:9654-9673 | None:intergenic | 35.0% | |
| TAATGGAGCCATTGTTCAAA+GGG | + | tig0014953:9701-9720 | Msa1355630:CDS | 35.0% | |
| GGATCAATTATGATTGTAGG+GGG | + | tig0014953:9872-9891 | Msa1355630:intron | 35.0% | |
| CAAAGGACTAAATAGAGGAT+TGG | + | tig0014953:9904-9923 | Msa1355630:CDS | 35.0% | |
| GATCACTGGCATTCTTTATT+CGG | + | tig0014953:9942-9961 | Msa1355630:CDS | 35.0% | |
| !!! | GGTGCTGCAGTTTTTATTTT+AGG | + | tig0014953:10010-10029 | Msa1355630:intron | 35.0% |
| ATAAGGGATGAATCTGACAT+AGG | - | tig0014953:10317-10336 | None:intergenic | 35.0% | |
| !! | TTGATAATGTCTGGAGCATT+GGG | + | tig0014953:10413-10432 | Msa1355630:CDS | 35.0% |
| GCCTGTTTGTATTTCCAAAT+TGG | + | tig0014953:10488-10507 | Msa1355630:CDS | 35.0% | |
| TGTATTTCCAAATTGGTCAG+GGG | + | tig0014953:10495-10514 | Msa1355630:CDS | 35.0% | |
| !! | GCTTTGATATAGTGGATTTG+TGG | - | tig0014953:10528-10547 | None:intergenic | 35.0% |
| TCCACTATATCAAAGCTTGA+AGG | + | tig0014953:10532-10551 | Msa1355630:CDS | 35.0% | |
| ! | TCCTTCAAGCTTTGATATAG+TGG | - | tig0014953:10536-10555 | None:intergenic | 35.0% |
| !! | GGATTAGCCAAATCTATAGA+AGG | + | tig0014953:10553-10572 | Msa1355630:CDS | 35.0% |
| ! | TCTTTAAGGAAGTCATGATC+TGG | - | tig0014953:10603-10622 | None:intergenic | 35.0% |
| AGCAAATGATGATTCATCTG+AGG | + | tig0014953:10749-10768 | Msa1355630:CDS | 35.0% | |
| ! | TTGTTTGCAGTCTGAAATTC+AGG | + | tig0014953:11084-11103 | Msa1355630:CDS | 35.0% |
| AATAAGATCACAGGTAATCC+AGG | - | tig0014953:11319-11338 | None:intergenic | 35.0% | |
| ! | TATAGATCACGTATTGACCT+CGG | - | tig0014953:11568-11587 | None:intergenic | 35.0% |
| !!! | ATGCTTTTTCCTTATGCTGT+TGG | - | tig0014953:11647-11666 | None:intergenic | 35.0% |
| TCTTCAAGCTTGTAAGAGTT+GGG | - | tig0014953:11796-11815 | None:intergenic | 35.0% | |
| TTCTTCAAGCTTGTAAGAGT+TGG | - | tig0014953:11797-11816 | None:intergenic | 35.0% | |
| AGAAGAACATGTACACAAGA+AGG | + | tig0014953:11906-11925 | Msa1355630:CDS | 35.0% | |
| ATTGTCTTCCTCATTGAACC+TGG | - | tig0014953:9595-9614 | None:intergenic | 40.0% | |
| AGGAAGACAATTTGGAAGGT+TGG | + | tig0014953:9604-9623 | Msa1355630:CDS | 40.0% | |
| AAAAGATGATCCTAGAAGGG+TGG | + | tig0014953:9627-9646 | Msa1355630:CDS | 40.0% | |
| ! | GTGGTCCATTCTTTGAAAGT+TGG | + | tig0014953:9646-9665 | Msa1355630:CDS | 40.0% |
| CTAATGGAGCCATTGTTCAA+AGG | + | tig0014953:9700-9719 | Msa1355630:CDS | 40.0% | |
| AGCCATTGTTCAAAGGGATA+GGG | + | tig0014953:9707-9726 | Msa1355630:CDS | 40.0% | |
| GATAGGGGAAAATGCTATGT+GGG | + | tig0014953:9723-9742 | Msa1355630:CDS | 40.0% | |
| GTGCTTAGACACAACTTCAT+AGG | + | tig0014953:9839-9858 | Msa1355630:intron | 40.0% | |
| AACTTTGTTAGCAGGATCAC+TGG | + | tig0014953:9928-9947 | Msa1355630:CDS | 40.0% | |
| !! | GCAAGCATATTATTGACTCC+TGG | + | tig0014953:10032-10051 | Msa1355630:intron | 40.0% |
| !! | CGGGGTTTTAATATCTTTGG+TGG | - | tig0014953:10148-10167 | None:intergenic | 40.0% |
| !! | GTTACCGTGTTGATAATGTC+TGG | + | tig0014953:10404-10423 | Msa1355630:CDS | 40.0% |
| TGCTCCAGACATTATCAACA+CGG | - | tig0014953:10411-10430 | None:intergenic | 40.0% | |
| !! | GTTGATAATGTCTGGAGCAT+TGG | + | tig0014953:10412-10431 | Msa1355630:CDS | 40.0% |
| CGCATCTATACCATATGCAT+AGG | + | tig0014953:10442-10461 | Msa1355630:CDS | 40.0% | |
| TATACCATATGCATAGGCGT+TGG | + | tig0014953:10448-10467 | Msa1355630:CDS | 40.0% | |
| AGCCAAATCTATAGAAGGTG+AGG | + | tig0014953:10558-10577 | Msa1355630:intron | 40.0% | |
| CACCTCACCTTCTATAGATT+TGG | - | tig0014953:10563-10582 | None:intergenic | 40.0% | |
| ! | GAGGTGAACTTTGAGAAACA+AGG | + | tig0014953:10577-10596 | Msa1355630:intron | 40.0% |
| CAATGATGCAGTTTCTGTCA+TGG | + | tig0014953:10701-10720 | Msa1355630:intron | 40.0% | |
| TCTCATTTACAAGTGCTACG+AGG | + | tig0014953:10773-10792 | Msa1355630:CDS | 40.0% | |
| AACAGGCTTTGCAAGCAAAT+TGG | + | tig0014953:10957-10976 | Msa1355630:intron | 40.0% | |
| ACAGGCTTTGCAAGCAAATT+GGG | + | tig0014953:10958-10977 | Msa1355630:intron | 40.0% | |
| ! | CTTTTGCATATTGCTGCCAT+GGG | - | tig0014953:11015-11034 | None:intergenic | 40.0% |
| ! | ACTTTTGCATATTGCTGCCA+TGG | - | tig0014953:11016-11035 | None:intergenic | 40.0% |
| TGGCAGCAATATGCAAAAGT+AGG | + | tig0014953:11016-11035 | Msa1355630:CDS | 40.0% | |
| TACACTGTTGTAGCACTACA+TGG | + | tig0014953:11061-11080 | Msa1355630:CDS | 40.0% | |
| ! | TCGGTGTCTTCATGAATCAT+AGG | - | tig0014953:11549-11568 | None:intergenic | 40.0% |
| TATGATTCATGAAGACACCG+AGG | + | tig0014953:11548-11567 | Msa1355630:intron | 40.0% | |
| !! | GGGATTTTAACACACTGTCA+AGG | - | tig0014953:11720-11739 | None:intergenic | 40.0% |
| TTCGAGCCTAGTAAAAGTTG+GGG | - | tig0014953:11745-11764 | None:intergenic | 40.0% | |
| GTTCGAGCCTAGTAAAAGTT+GGG | - | tig0014953:11746-11765 | None:intergenic | 40.0% | |
| TGTTCGAGCCTAGTAAAAGT+TGG | - | tig0014953:11747-11766 | None:intergenic | 40.0% | |
| ! | CTTTTACTAGGCTCGAACAA+TGG | + | tig0014953:11748-11767 | Msa1355630:CDS | 40.0% |
| TTGTAAGAGTTGGGAGTTCT+GGG | - | tig0014953:11787-11806 | None:intergenic | 40.0% | |
| ! | TTTGGATTTGCTTCCAACTG+GGG | - | tig0014953:11863-11882 | None:intergenic | 40.0% |
| ! | CTTTGGATTTGCTTCCAACT+GGG | - | tig0014953:11864-11883 | None:intergenic | 40.0% |
| ! | TCTTTGGATTTGCTTCCAAC+TGG | - | tig0014953:11865-11884 | None:intergenic | 40.0% |
| TTGTTCTCGGAAATGCTCTT+TGG | - | tig0014953:11881-11900 | None:intergenic | 40.0% | |
| !! | ATGTACACAAGAAGGTGTTG+AGG | + | tig0014953:11914-11933 | Msa1355630:CDS | 40.0% |
| AACGAAGTGAATGCAGCAAA+GGG | - | tig0014953:11991-12010 | None:intergenic | 40.0% | |
| CTATGAGAAGCTCAAGCCAT+TGG | + | tig0014953:9530-9549 | Msa1355630:CDS | 45.0% | |
| AAAGAATGGACCACCCTTCT+AGG | - | tig0014953:9640-9659 | None:intergenic | 45.0% | |
| GAGCCATTGTTCAAAGGGAT+AGG | + | tig0014953:9706-9725 | Msa1355630:CDS | 45.0% | |
| GCCATTGTTCAAAGGGATAG+GGG | + | tig0014953:9708-9727 | Msa1355630:CDS | 45.0% | |
| TCCCCTATCCCTTTGAACAA+TGG | - | tig0014953:9712-9731 | None:intergenic | 45.0% | |
| GGATAGGGGAAAATGCTATG+TGG | + | tig0014953:9722-9741 | Msa1355630:CDS | 45.0% | |
| GGATTGGGAACTTTGTTAGC+AGG | + | tig0014953:9920-9939 | Msa1355630:CDS | 45.0% | |
| CTGAGCCATTGCTTCACTAT+TGG | + | tig0014953:10276-10295 | Msa1355630:intron | 45.0% | |
| TCCTGCCAATAGTGAAGCAA+TGG | - | tig0014953:10284-10303 | None:intergenic | 45.0% | |
| AAGACCAACGCCTATGCATA+TGG | - | tig0014953:10455-10474 | None:intergenic | 45.0% | |
| AGTTCTTCCCCTGACCAATT+TGG | - | tig0014953:10505-10524 | None:intergenic | 45.0% | |
| TGGCAGCATCTTGAGTATCT+TGG | - | tig0014953:10986-11005 | None:intergenic | 45.0% | |
| ! | TCCCAACCCCAACTTTTACT+AGG | + | tig0014953:11736-11755 | Msa1355630:CDS | 45.0% |
| GCCTAGTAAAAGTTGGGGTT+GGG | - | tig0014953:11740-11759 | None:intergenic | 45.0% | |
| AGCCTAGTAAAAGTTGGGGT+TGG | - | tig0014953:11741-11760 | None:intergenic | 45.0% | |
| CTTGTAAGAGTTGGGAGTTC+TGG | - | tig0014953:11788-11807 | None:intergenic | 45.0% | |
| ! | AGTGATTGTTGTTCCCCAGT+TGG | + | tig0014953:11847-11866 | Msa1355630:CDS | 45.0% |
| TGTTGAGGCCACAACTTAGT+AGG | + | tig0014953:11929-11948 | Msa1355630:CDS | 45.0% | |
| ! | GTAGTGCTTCTGAGAACTCA+AGG | - | tig0014953:11969-11988 | None:intergenic | 45.0% |
| CAACGAAGTGAATGCAGCAA+AGG | - | tig0014953:11992-12011 | None:intergenic | 45.0% | |
| TGCATTCACTTCGTTGCTAG+TGG | + | tig0014953:11996-12015 | Msa1355630:CDS | 45.0% | |
| !! | AAAAAAATAAAAAAATAGAA+GGG | - | tig0014953:10880-10899 | None:intergenic | 5.0% |
| ! | TATGTGGGCTGTCATGACTG+TGG | + | tig0014953:9738-9757 | Msa1355630:CDS | 50.0% |
| CATGACTGTGGTTGTGGTCA+TGG | + | tig0014953:9750-9769 | Msa1355630:CDS | 50.0% | |
| GTAGGGGGAACCTTATGCAA+AGG | + | tig0014953:9887-9906 | Msa1355630:intron | 50.0% | |
| CATTTGAGAAGCCGAGTCAC+AGG | - | tig0014953:10251-10270 | None:intergenic | 50.0% | |
| GCCATTGCTTCACTATTGGC+AGG | + | tig0014953:10280-10299 | Msa1355630:intron | 50.0% | |
| GATACTCAAGATGCTGCCAC+AGG | + | tig0014953:10987-11006 | Msa1355630:CDS | 50.0% | |
| ! | GGGTAATGGCCAACAGCATA+AGG | + | tig0014953:11635-11654 | Msa1355630:CDS | 50.0% |
| CACTTCGTTGCTAGTGGAGA+TGG | + | tig0014953:12002-12021 | Msa1355630:CDS | 50.0% | |
| TTCGTTGCTAGTGGAGATGG+TGG | + | tig0014953:12005-12024 | Msa1355630:CDS | 50.0% | |
| GGCTGTCATGACTGTGGTTG+TGG | + | tig0014953:9744-9763 | Msa1355630:CDS | 55.0% | |
| GTGGTCATGGAGTTCACTGC+AGG | + | tig0014953:9763-9782 | Msa1355630:CDS | 55.0% | |
| CGGTATCTTGCAGATGTCCC+TGG | + | tig0014953:9962-9981 | Msa1355630:CDS | 55.0% | |
| ATTGCTGCCATGGGATCCTG+TGG | - | tig0014953:11006-11025 | None:intergenic | 55.0% | |
| GATGCTGCCACAGGATCCCA+TGG | + | tig0014953:10996-11015 | Msa1355630:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0014953 | gene | 9511 | 12194 | 9511 | ID=Msa1355630;Name=Msa1355630 |
| tig0014953 | mRNA | 9511 | 12194 | 9511 | ID=Msa1355630-mRNA-1;Parent=Msa1355630;Name=Msa1355630-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|6|0|520 |
| tig0014953 | exon | 9511 | 9784 | 9511 | ID=Msa1355630-mRNA-1:exon:9541;Parent=Msa1355630-mRNA-1 |
| tig0014953 | exon | 9891 | 10010 | 9891 | ID=Msa1355630-mRNA-1:exon:9542;Parent=Msa1355630-mRNA-1 |
| tig0014953 | exon | 10302 | 10574 | 10302 | ID=Msa1355630-mRNA-1:exon:9543;Parent=Msa1355630-mRNA-1 |
| tig0014953 | exon | 10712 | 10830 | 10712 | ID=Msa1355630-mRNA-1:exon:9544;Parent=Msa1355630-mRNA-1 |
| tig0014953 | exon | 10962 | 11105 | 10962 | ID=Msa1355630-mRNA-1:exon:9545;Parent=Msa1355630-mRNA-1 |
| tig0014953 | exon | 11562 | 12194 | 11562 | ID=Msa1355630-mRNA-1:exon:9546;Parent=Msa1355630-mRNA-1 |
| tig0014953 | CDS | 9511 | 9784 | 9511 | ID=Msa1355630-mRNA-1:cds;Parent=Msa1355630-mRNA-1 |
| tig0014953 | CDS | 9891 | 10010 | 9891 | ID=Msa1355630-mRNA-1:cds;Parent=Msa1355630-mRNA-1 |
| tig0014953 | CDS | 10302 | 10574 | 10302 | ID=Msa1355630-mRNA-1:cds;Parent=Msa1355630-mRNA-1 |
| tig0014953 | CDS | 10712 | 10830 | 10712 | ID=Msa1355630-mRNA-1:cds;Parent=Msa1355630-mRNA-1 |
| tig0014953 | CDS | 10962 | 11105 | 10962 | ID=Msa1355630-mRNA-1:cds;Parent=Msa1355630-mRNA-1 |
| tig0014953 | CDS | 11562 | 12194 | 11562 | ID=Msa1355630-mRNA-1:cds;Parent=Msa1355630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
