Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339060 | KEH30429.1 | 79.726 | 730 | 130 | 2 | 1 | 712 | 1 | 730 | 0.0 | 1181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339060 | sp|O65009|BNM2A_BRANA | 37.838 | 222 | 130 | 3 | 489 | 703 | 60 | 280 | 2.86e-46 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339060 | A0A072UL17 | 79.726 | 730 | 130 | 2 | 1 | 712 | 1 | 730 | 0.0 | 1181 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0190670 | Msa1339060 | 0.805663 | 1.197485e-49 | -8.615850e-47 |
| Msa1024350 | Msa1339060 | 0.800841 | 1.192497e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339060 | MtrunA17_Chr4g0034691 | 77.808 | 730 | 130 | 3 | 1 | 712 | 1 | 716 | 0.0 | 1143 |
| Msa1339060 | MtrunA17_Chr4g0034721 | 70.478 | 586 | 115 | 10 | 146 | 712 | 38 | 584 | 0.0 | 767 |
| Msa1339060 | MtrunA17_Chr4g0034721 | 47.645 | 361 | 76 | 9 | 1 | 289 | 1 | 320 | 2.07e-76 | 256 |
| Msa1339060 | MtrunA17_Chr4g0034731 | 66.585 | 410 | 100 | 6 | 318 | 705 | 39 | 433 | 0.0 | 540 |
| Msa1339060 | MtrunA17_Chr4g0034731 | 60.000 | 180 | 48 | 4 | 33 | 201 | 19 | 185 | 1.51e-54 | 193 |
| Msa1339060 | MtrunA17_Chr4g0034731 | 54.396 | 182 | 42 | 4 | 190 | 360 | 34 | 185 | 2.10e-46 | 171 |
| Msa1339060 | MtrunA17_Chr4g0034731 | 54.749 | 179 | 40 | 4 | 146 | 313 | 37 | 185 | 2.17e-46 | 171 |
| Msa1339060 | MtrunA17_Chr4g0034731 | 53.459 | 159 | 40 | 4 | 130 | 266 | 39 | 185 | 8.45e-38 | 146 |
| Msa1339060 | MtrunA17_Chr4g0034731 | 44.643 | 112 | 51 | 1 | 58 | 158 | 107 | 218 | 1.98e-16 | 82.4 |
| Msa1339060 | MtrunA17_Chr4g0034731 | 46.465 | 99 | 36 | 1 | 381 | 462 | 37 | 135 | 1.64e-14 | 76.6 |
| Msa1339060 | MtrunA17_Chr4g0034451 | 65.552 | 299 | 90 | 4 | 414 | 712 | 249 | 534 | 2.93e-136 | 411 |
| Msa1339060 | MtrunA17_Chr3g0144391 | 58.621 | 232 | 94 | 2 | 476 | 707 | 279 | 508 | 2.59e-92 | 296 |
| Msa1339060 | MtrunA17_Chr6g0485051 | 68.075 | 213 | 63 | 2 | 501 | 712 | 1 | 209 | 2.86e-92 | 286 |
| Msa1339060 | MtrunA17_Chr3g0144411 | 58.475 | 236 | 96 | 2 | 472 | 707 | 308 | 541 | 4.69e-91 | 294 |
| Msa1339060 | MtrunA17_Chr3g0138231 | 46.460 | 226 | 116 | 4 | 489 | 711 | 50 | 273 | 5.50e-62 | 208 |
| Msa1339060 | MtrunA17_Chr4g0034821 | 45.662 | 219 | 114 | 4 | 489 | 704 | 75 | 291 | 2.56e-60 | 205 |
| Msa1339060 | MtrunA17_Chr3g0144451 | 46.575 | 219 | 112 | 4 | 489 | 704 | 59 | 275 | 1.71e-58 | 199 |
| Msa1339060 | MtrunA17_Chr3g0144421 | 40.244 | 246 | 134 | 5 | 463 | 705 | 68 | 303 | 2.07e-54 | 189 |
| Msa1339060 | MtrunA17_Chr4g0034051 | 74.713 | 87 | 22 | 0 | 626 | 712 | 1 | 87 | 1.77e-43 | 151 |
| Msa1339060 | MtrunA17_Chr1g0147271 | 37.900 | 219 | 126 | 6 | 489 | 703 | 171 | 383 | 2.21e-40 | 152 |
| Msa1339060 | MtrunA17_Chr3g0139431 | 38.258 | 264 | 142 | 10 | 454 | 704 | 66 | 321 | 1.32e-39 | 148 |
| Msa1339060 | MtrunA17_Chr1g0147261 | 36.111 | 216 | 129 | 5 | 489 | 702 | 89 | 297 | 3.22e-38 | 144 |
| Msa1339060 | MtrunA17_Chr1g0147291 | 36.111 | 216 | 131 | 5 | 489 | 703 | 56 | 265 | 3.85e-38 | 142 |
| Msa1339060 | MtrunA17_Chr1g0147251 | 35.047 | 214 | 131 | 5 | 489 | 702 | 35 | 240 | 6.06e-38 | 141 |
| Msa1339060 | MtrunA17_Chr1g0147321 | 35.814 | 215 | 131 | 5 | 489 | 702 | 27 | 235 | 3.48e-37 | 139 |
| Msa1339060 | MtrunA17_Chr1g0146631 | 34.404 | 218 | 133 | 6 | 489 | 703 | 113 | 323 | 2.36e-36 | 139 |
| Msa1339060 | MtrunA17_Chr1g0147301 | 35.000 | 220 | 132 | 6 | 489 | 703 | 70 | 283 | 3.92e-36 | 137 |
| Msa1339060 | MtrunA17_Chr1g0147331 | 34.404 | 218 | 133 | 6 | 489 | 703 | 113 | 323 | 7.68e-36 | 138 |
| Msa1339060 | MtrunA17_Chr1g0147311 | 35.000 | 220 | 132 | 6 | 489 | 703 | 141 | 354 | 1.81e-34 | 135 |
| Msa1339060 | MtrunA17_Chr1g0147241 | 34.737 | 190 | 117 | 4 | 513 | 702 | 128 | 310 | 6.20e-31 | 123 |
| Msa1339060 | MtrunA17_Chr4g0034711 | 73.684 | 76 | 20 | 0 | 477 | 552 | 22 | 97 | 6.24e-31 | 117 |
| Msa1339060 | MtrunA17_Chr8g0365401 | 32.474 | 194 | 119 | 5 | 513 | 702 | 438 | 623 | 7.57e-26 | 113 |
| Msa1339060 | MtrunA17_Chr5g0413591 | 30.928 | 194 | 122 | 6 | 513 | 702 | 441 | 626 | 1.78e-24 | 108 |
| Msa1339060 | MtrunA17_Chr8g0365381 | 30.909 | 220 | 138 | 7 | 489 | 702 | 429 | 640 | 3.41e-24 | 107 |
| Msa1339060 | MtrunA17_Chr3g0117791 | 24.863 | 366 | 223 | 11 | 345 | 702 | 303 | 624 | 1.02e-23 | 106 |
| Msa1339060 | MtrunA17_Chr4g0034021 | 35.556 | 225 | 103 | 10 | 327 | 527 | 50 | 256 | 1.16e-23 | 100 |
| Msa1339060 | MtrunA17_Chr8g0365361 | 30.890 | 191 | 126 | 5 | 513 | 702 | 207 | 392 | 1.40e-22 | 100 |
| Msa1339060 | MtrunA17_Chr4g0076231 | 32.911 | 158 | 101 | 4 | 546 | 702 | 3 | 156 | 4.97e-21 | 90.5 |
| Msa1339060 | MtrunA17_Chr4g0034031 | 60.714 | 56 | 22 | 0 | 548 | 603 | 1 | 56 | 6.18e-18 | 78.2 |
| Msa1339060 | MtrunA17_Chr8g0355311 | 33.553 | 152 | 85 | 7 | 555 | 704 | 53 | 190 | 1.19e-15 | 76.3 |
| Msa1339060 | MtrunA17_Chr5g0412991 | 27.749 | 191 | 132 | 4 | 513 | 702 | 223 | 408 | 1.96e-14 | 76.3 |
| Msa1339060 | MtrunA17_Chr5g0412991 | 28.235 | 170 | 117 | 3 | 513 | 681 | 15 | 180 | 3.98e-13 | 72.0 |
| Msa1339060 | MtrunA17_Chr2g0318931 | 30.769 | 221 | 119 | 11 | 489 | 704 | 79 | 270 | 2.14e-14 | 74.3 |
| Msa1339060 | MtrunA17_Chr5g0412981 | 27.749 | 191 | 132 | 4 | 513 | 702 | 223 | 408 | 2.14e-14 | 75.9 |
| Msa1339060 | MtrunA17_Chr5g0412951 | 26.702 | 191 | 134 | 4 | 513 | 702 | 22 | 207 | 3.91e-14 | 72.0 |
| Msa1339060 | MtrunA17_Chr1g0168781 | 33.333 | 150 | 89 | 6 | 555 | 704 | 121 | 259 | 4.10e-13 | 70.5 |
| Msa1339060 | MtrunA17_Chr2g0318901 | 31.469 | 143 | 86 | 5 | 562 | 704 | 129 | 259 | 5.04e-12 | 67.0 |
| Msa1339060 | MtrunA17_Chr8g0355871 | 26.941 | 219 | 132 | 9 | 489 | 705 | 31 | 223 | 2.54e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339060 | AT1G49320.1 | 35.586 | 222 | 135 | 3 | 489 | 703 | 58 | 278 | 3.44e-45 | 163 |
| Msa1339060 | AT5G25610.1 | 35.160 | 219 | 132 | 6 | 489 | 702 | 176 | 389 | 1.13e-36 | 142 |
| Msa1339060 | AT1G70370.2 | 24.717 | 530 | 312 | 24 | 230 | 703 | 125 | 623 | 9.93e-23 | 103 |
| Msa1339060 | AT1G70370.1 | 24.717 | 530 | 312 | 24 | 230 | 703 | 125 | 623 | 9.93e-23 | 103 |
| Msa1339060 | AT1G60390.1 | 29.381 | 194 | 125 | 6 | 513 | 702 | 435 | 620 | 1.49e-22 | 103 |
| Msa1339060 | AT1G23760.1 | 27.320 | 194 | 131 | 6 | 513 | 703 | 433 | 619 | 3.32e-19 | 92.4 |
Find 226 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGTTGTGTAAGGTTTAT+TGG | 0.206922 | tig0003030:-35788 | Msa1339060:intergenic |
| TTTACAGAAGTACACCATTT+TGG | 0.213237 | tig0003030:+37202 | Msa1339060:CDS |
| GTGGTAGATGGGTGGCCTTT+TGG | 0.266019 | tig0003030:-36774 | Msa1339060:intergenic |
| TTGTACCCGGTAGTGTAATC+TGG | 0.274373 | tig0003030:-36171 | Msa1339060:intergenic |
| TTGTACCCGGTAGTGTAATC+TGG | 0.274373 | tig0003030:-36312 | Msa1339060:intergenic |
| ATTTAGGCAGCTTAGCATTA+AGG | 0.280064 | tig0003030:+37427 | Msa1339060:CDS |
| TCCATTGGATTCTGATTGTT+TGG | 0.283923 | tig0003030:-36532 | Msa1339060:intergenic |
| AATTTGGTTGCTTGGTTTCA+TGG | 0.292156 | tig0003030:-36719 | Msa1339060:intergenic |
| TGCATTGGAATCTGGTTGTT+TGG | 0.297536 | tig0003030:-35827 | Msa1339060:intergenic |
| TCCATTGGAATCTGGTTGTT+TGG | 0.301710 | tig0003030:-36109 | Msa1339060:intergenic |
| TCCATTGGAATCTGGTTGTT+TGG | 0.301710 | tig0003030:-36391 | Msa1339060:intergenic |
| GGACCTTACAAAACTCAATA+TGG | 0.303101 | tig0003030:+35988 | Msa1339060:CDS |
| GGCAGTGTAATCTAGGTTAT+TGG | 0.304685 | tig0003030:-35599 | Msa1339060:intergenic |
| TCCGTTTGAATTTGTTTGTT+TGG | 0.305836 | tig0003030:-36250 | Msa1339060:intergenic |
| TTGTACCCTGTAGTGTAATA+TGG | 0.306717 | tig0003030:-35748 | Msa1339060:intergenic |
| TGCCTAAATATTATATGATC+TGG | 0.310349 | tig0003030:-37413 | Msa1339060:intergenic |
| GGTAGTGTAATCTTGGTTCT+TGG | 0.318677 | tig0003030:-35881 | Msa1339060:intergenic |
| GGTAGTGTAATCTTGGTTCT+TGG | 0.318677 | tig0003030:-36022 | Msa1339060:intergenic |
| TTAGCTTGAGGAGAATCTTC+AGG | 0.325821 | tig0003030:-37011 | Msa1339060:intergenic |
| TGTAGTGTAATATGGATTCT+TGG | 0.325895 | tig0003030:-35740 | Msa1339060:intergenic |
| ATCATGTGATATTTCCAAAA+TGG | 0.325921 | tig0003030:-37216 | Msa1339060:intergenic |
| ATGTACCTGATAAGGTAATT+TGG | 0.330584 | tig0003030:-36735 | Msa1339060:intergenic |
| TCCATTGGAATCTGGTTGTT+TGG | 0.335644 | tig0003030:-35968 | Msa1339060:intergenic |
| GGACCTTACAAAACTCAATA+TGG | 0.338395 | tig0003030:+36129 | Msa1339060:CDS |
| GGACCTTACAAAACTCAATA+TGG | 0.338395 | tig0003030:+36411 | Msa1339060:CDS |
| TGTAAGGTTTATTGGATTCA+TGG | 0.339275 | tig0003030:-35780 | Msa1339060:intergenic |
| AGCAACCAAATTACCTTATC+AGG | 0.341588 | tig0003030:+36730 | Msa1339060:CDS |
| ATGGGTTTGAGTCTTATATC+TGG | 0.342357 | tig0003030:-36661 | Msa1339060:intergenic |
| GGTAGTGTAATCTGGGTTCT+TGG | 0.343242 | tig0003030:-36163 | Msa1339060:intergenic |
| GGTAGTGTAATCTGGGTTCT+TGG | 0.343242 | tig0003030:-36304 | Msa1339060:intergenic |
| TCCATTGGATTCTTGTTGTT+CGG | 0.344557 | tig0003030:-36586 | Msa1339060:intergenic |
| GGACCTTACATAACTCAATA+TGG | 0.345216 | tig0003030:+36552 | Msa1339060:CDS |
| CGTACAATTCATTAGATTCA+TGG | 0.345861 | tig0003030:-36680 | Msa1339060:intergenic |
| GGACCTTACAAAACTCAATA+TGG | 0.346411 | tig0003030:+36270 | Msa1339060:CDS |
| ACCCAGATCATATAATATTT+AGG | 0.367907 | tig0003030:+37411 | Msa1339060:CDS |
| TTGTAAGGTCCATTGGAATC+TGG | 0.371655 | tig0003030:-35976 | Msa1339060:intergenic |
| TTGTAAGGTCCATTGGAATC+TGG | 0.371655 | tig0003030:-36117 | Msa1339060:intergenic |
| TTGTAAGGTCCATTGGAATC+TGG | 0.371655 | tig0003030:-36399 | Msa1339060:intergenic |
| TGTGAATCGGAAACCATTAC+AGG | 0.374526 | tig0003030:+37059 | Msa1339060:CDS |
| TGATGTGAATGGAGATAAAA+TGG | 0.379160 | tig0003030:+37349 | Msa1339060:CDS |
| TGTAAGGCCCATTGGGTTCA+TGG | 0.379597 | tig0003030:-35639 | Msa1339060:intergenic |
| GCATTGGAATCTGGTTGTTT+GGG | 0.383480 | tig0003030:-35826 | Msa1339060:intergenic |
| TGTAAGGTCCATTGGATTCA+TGG | 0.385445 | tig0003030:-35921 | Msa1339060:intergenic |
| CGTCTTTGTCTCCCCTGTAA+TGG | 0.385779 | tig0003030:-37072 | Msa1339060:intergenic |
| CTACCATAGGTTGTTGTGTA+AGG | 0.385787 | tig0003030:-35796 | Msa1339060:intergenic |
| TGTAAGGTCCATCCGATTCA+TGG | 0.388912 | tig0003030:-36203 | Msa1339060:intergenic |
| GAATTTGTTGACATGATCAT+TGG | 0.389245 | tig0003030:+37122 | Msa1339060:CDS |
| AGTCTCTGGCATTGATGTCT+TGG | 0.390832 | tig0003030:-35498 | Msa1339060:intergenic |
| AGCTGTCGGTGAGGGTTTGT+TGG | 0.391933 | tig0003030:-37174 | Msa1339060:intergenic |
| GGTAGTGTAATCTGAGTTCT+TGG | 0.396320 | tig0003030:-36445 | Msa1339060:intergenic |
| TGCAGTGTTGTAAGGTTCAT+TGG | 0.399713 | tig0003030:-36493 | Msa1339060:intergenic |
| ACGATCCAAGTTAGGAGATT+GGG | 0.401570 | tig0003030:-36817 | Msa1339060:intergenic |
| GCCATTTGGACACATCTGAT+TGG | 0.403046 | tig0003030:+37387 | Msa1339060:CDS |
| GTTTATTGGATTCATGGGTA+TGG | 0.403482 | tig0003030:-35774 | Msa1339060:intergenic |
| GATAAGGTAATTTGGTTGCT+TGG | 0.405225 | tig0003030:-36727 | Msa1339060:intergenic |
| TTGAAATATTGAGTAATGTA+AGG | 0.407639 | tig0003030:-35568 | Msa1339060:intergenic |
| TGTACCCGGTAGTGTAATCT+TGG | 0.411279 | tig0003030:-35888 | Msa1339060:intergenic |
| TGTACCCGGTAGTGTAATCT+TGG | 0.411279 | tig0003030:-36029 | Msa1339060:intergenic |
| ATGTAAGGTGCATTGGAATC+TGG | 0.411886 | tig0003030:-35835 | Msa1339060:intergenic |
| GGATGACAAGCTACCCATTT+GGG | 0.412800 | tig0003030:-37248 | Msa1339060:intergenic |
| GTCCATTGGATTCATGGGTA+TGG | 0.416460 | tig0003030:-35915 | Msa1339060:intergenic |
| GAACCTTACAACACTGCATA+TGG | 0.417467 | tig0003030:+36498 | Msa1339060:CDS |
| AGCTGTTGGAATTTGCCATT+TGG | 0.418321 | tig0003030:+37373 | Msa1339060:CDS |
| GTCCATCAGATTCATGGGTA+TGG | 0.419194 | tig0003030:-36338 | Msa1339060:intergenic |
| TGTAAGGTCCATCGGATTCA+TGG | 0.419289 | tig0003030:-36062 | Msa1339060:intergenic |
| GTCCATCCGATTCATGGGTA+TGG | 0.420457 | tig0003030:-36197 | Msa1339060:intergenic |
| CTCTCCAAGTGAATTTATCA+TGG | 0.423407 | tig0003030:-37036 | Msa1339060:intergenic |
| GTTCATTGGATGCATGGGTA+TGG | 0.426590 | tig0003030:-36479 | Msa1339060:intergenic |
| GTCCATCGGATTCATGGGTA+TGG | 0.426611 | tig0003030:-36056 | Msa1339060:intergenic |
| TGACAAAAGTAAATAGCATA+TGG | 0.426890 | tig0003030:-37281 | Msa1339060:intergenic |
| GGATCGTACAGAAGCTTTCA+AGG | 0.432297 | tig0003030:+36833 | Msa1339060:CDS |
| GTTTATCATTCGAGTCCATT+TGG | 0.433175 | tig0003030:-35546 | Msa1339060:intergenic |
| TTGAGTTATGTAAGGTCCAT+TGG | 0.433211 | tig0003030:-36547 | Msa1339060:intergenic |
| TGTAAGGTCCATCAGATTCA+TGG | 0.439928 | tig0003030:-36344 | Msa1339060:intergenic |
| AATTTGGATGATCTTTATGT+TGG | 0.440932 | tig0003030:+36867 | Msa1339060:CDS |
| TTACCATATGCAGTGTTGTA+AGG | 0.442322 | tig0003030:-36501 | Msa1339060:intergenic |
| ATGTAAGGTGCATTGGAATC+CGG | 0.443286 | tig0003030:-35694 | Msa1339060:intergenic |
| GGGATGACAAGCTACCCATT+TGG | 0.447559 | tig0003030:-37249 | Msa1339060:intergenic |
| GCTTCTGTACGATCCAAGTT+AGG | 0.449491 | tig0003030:-36825 | Msa1339060:intergenic |
| TTACCATATTGAGTTATGTA+AGG | 0.449605 | tig0003030:-36555 | Msa1339060:intergenic |
| CATAGTGATAGTTGGAGTCT+TGG | 0.449918 | tig0003030:+34466 | Msa1339060:CDS |
| AAATGGTGTACTTCTGTAAA+GGG | 0.451382 | tig0003030:-37199 | Msa1339060:intergenic |
| TACGATCCAAGTTAGGAGAT+TGG | 0.454814 | tig0003030:-36818 | Msa1339060:intergenic |
| GGCAGTTATGTAAGGCCCAT+TGG | 0.454832 | tig0003030:-35647 | Msa1339060:intergenic |
| CTTATCAGGTACATATCTAC+TGG | 0.455404 | tig0003030:+36744 | Msa1339060:CDS |
| AAAATGGTGTACTTCTGTAA+AGG | 0.455484 | tig0003030:-37200 | Msa1339060:intergenic |
| CATCAATGCCAGAGACTTGA+AGG | 0.456451 | tig0003030:+35504 | Msa1339060:CDS |
| GCAGTTATGTAAGGCCCATT+GGG | 0.458021 | tig0003030:-35646 | Msa1339060:intergenic |
| CAACTCTACCTTCAAGTCTC+TGG | 0.458124 | tig0003030:-35512 | Msa1339060:intergenic |
| CAATTGTACATAGTGATAGT+TGG | 0.458347 | tig0003030:+34458 | Msa1339060:CDS |
| TTGAAATATTGAGTTATGTA+AGG | 0.458628 | tig0003030:-35709 | Msa1339060:intergenic |
| TTGAAATATTGAGTTATGTA+AGG | 0.458628 | tig0003030:-35850 | Msa1339060:intergenic |
| ATGATATTGATGCTCCCAAA+TGG | 0.459757 | tig0003030:+37234 | Msa1339060:CDS |
| TACAGGGACTAGAGTGTTCA+AGG | 0.461314 | tig0003030:+37313 | Msa1339060:CDS |
| TTGAGTTATGTAAGGTGCAT+TGG | 0.461371 | tig0003030:-35701 | Msa1339060:intergenic |
| TTGAGTTATGTAAGGTGCAT+TGG | 0.461371 | tig0003030:-35842 | Msa1339060:intergenic |
| CAGTAGATATGTACCTGATA+AGG | 0.464829 | tig0003030:-36743 | Msa1339060:intergenic |
| TTTGGGTTCAAGTCTACCAT+AGG | 0.469281 | tig0003030:-35809 | Msa1339060:intergenic |
| AAGAATCCATATTACACTAC+AGG | 0.469658 | tig0003030:+35742 | Msa1339060:CDS |
| GGAAGTTGTGTACGGTCCAT+TGG | 0.473348 | tig0003030:-36601 | Msa1339060:intergenic |
| TTTATTGGATTCATGGGTAT+GGG | 0.474335 | tig0003030:-35773 | Msa1339060:intergenic |
| GGAAGTTATGTAAGGTCCAT+TGG | 0.474736 | tig0003030:-35929 | Msa1339060:intergenic |
| GTAAGGTTTATTGGATTCAT+GGG | 0.477244 | tig0003030:-35779 | Msa1339060:intergenic |
| TTTGGCTTCATGTGTACCAT+AGG | 0.479289 | tig0003030:-36232 | Msa1339060:intergenic |
| CTACCATAGGCAGTTATGTA+AGG | 0.480392 | tig0003030:-35655 | Msa1339060:intergenic |
| TAGCTTGAGGAGAATCTTCA+GGG | 0.480432 | tig0003030:-37010 | Msa1339060:intergenic |
| GTTGAGAGATCAGGACCAAA+TGG | 0.482943 | tig0003030:+35531 | Msa1339060:CDS |
| GCATTGGAACCCACAGAAGA+TGG | 0.483535 | tig0003030:-37490 | Msa1339060:intergenic |
| GAATTGTACGTATCTGCATA+TGG | 0.484602 | tig0003030:+36693 | Msa1339060:CDS |
| ACCACCTCAAAAGATCTAGA+AGG | 0.485704 | tig0003030:+36792 | Msa1339060:CDS |
| GTGTTCAAGGTCTCACTTGT+CGG | 0.486727 | tig0003030:+37326 | Msa1339060:CDS |
| ACACATTGGAGAGTTCTTCC+CGG | 0.491477 | tig0003030:-37450 | Msa1339060:intergenic |
| GGACCTTACATAACTTCCTA+TGG | 0.491567 | tig0003030:+35934 | Msa1339060:CDS |
| GGTGGTGAGAATACTATGTT+TGG | 0.495632 | tig0003030:-37153 | Msa1339060:intergenic |
| GGGCCTTACATAACTGCCTA+TGG | 0.496076 | tig0003030:+35652 | Msa1339060:CDS |
| GATAGTTGGAGTCTTGGAGA+GGG | 0.499049 | tig0003030:+34472 | Msa1339060:CDS |
| ACCTGTGAACCATCTTCTGT+GGG | 0.500279 | tig0003030:+37481 | Msa1339060:CDS |
| GTAAGGCCCATTGGGTTCAT+GGG | 0.500412 | tig0003030:-35638 | Msa1339060:intergenic |
| CGTACAGAAGCTTTCAAGGT+AGG | 0.500541 | tig0003030:+36837 | Msa1339060:CDS |
| GCCTAAATATTATATGATCT+GGG | 0.500651 | tig0003030:-37412 | Msa1339060:intergenic |
| TACCTGTGAACCATCTTCTG+TGG | 0.501318 | tig0003030:+37480 | Msa1339060:CDS |
| TTTATCATGGATTTAGCTTG+AGG | 0.502246 | tig0003030:-37023 | Msa1339060:intergenic |
| GTACAATTCATTAGATTCAT+GGG | 0.503071 | tig0003030:-36679 | Msa1339060:intergenic |
| TCCAATCAGATGTGTCCAAA+TGG | 0.503560 | tig0003030:-37388 | Msa1339060:intergenic |
| CCACTTGGACGGGAAATTGA+AGG | 0.503790 | tig0003030:-36902 | Msa1339060:intergenic |
| GAAAAGAGTTGAAGAACACT+TGG | 0.505531 | tig0003030:-36984 | Msa1339060:intergenic |
| GCCAAACAAACAAATTCAAA+CGG | 0.508367 | tig0003030:+36249 | Msa1339060:CDS |
| AAACCTTACACAACAACCTA+TGG | 0.509425 | tig0003030:+35793 | Msa1339060:CDS |
| CTACCATAGGAAGTTATGTA+AGG | 0.511322 | tig0003030:-36078 | Msa1339060:intergenic |
| CTACCATAGGAAGTTATGTA+AGG | 0.511322 | tig0003030:-36360 | Msa1339060:intergenic |
| GTAAGGTCCATTGGATTCAT+GGG | 0.511530 | tig0003030:-35920 | Msa1339060:intergenic |
| TTTGCCTTCATGTCTACCAT+AGG | 0.512267 | tig0003030:-35668 | Msa1339060:intergenic |
| TGCACCCGGCAGTGTAATCT+AGG | 0.512282 | tig0003030:-35606 | Msa1339060:intergenic |
| GGACCTTACATAACTTCCTA+TGG | 0.513216 | tig0003030:+36357 | Msa1339060:CDS |
| CAAGACCCATACCCATGAAT+CGG | 0.515556 | tig0003030:+36191 | Msa1339060:CDS |
| GGACCTTACATAACTTCCTA+TGG | 0.515655 | tig0003030:+36075 | Msa1339060:CDS |
| GGAGATAAAATGGAAGCTGT+TGG | 0.517741 | tig0003030:+37359 | Msa1339060:CDS |
| CGACCATAGGAAGTTATGTA+AGG | 0.518339 | tig0003030:-35937 | Msa1339060:intergenic |
| TTCATTGGATGCATGGGTAT+GGG | 0.519593 | tig0003030:-36478 | Msa1339060:intergenic |
| TTCACTTGGAGAGTGTGAAT+CGG | 0.519976 | tig0003030:+37046 | Msa1339060:CDS |
| GAAGGTAGAGTTGAGAGATC+AGG | 0.522133 | tig0003030:+35522 | Msa1339060:CDS |
| GGACCTTACATAAATTCCTA+TGG | 0.523762 | tig0003030:+36216 | Msa1339060:CDS |
| TCCATTGGATTCATGGGTAT+GGG | 0.524497 | tig0003030:-35914 | Msa1339060:intergenic |
| TAGACATGAAGGCAAACAAC+CGG | 0.526259 | tig0003030:+35675 | Msa1339060:CDS |
| GTACCATAGGAATTTATGTA+AGG | 0.527438 | tig0003030:-36219 | Msa1339060:intergenic |
| TTTGGCTTCATGTCTACCAT+AGG | 0.530193 | tig0003030:-36091 | Msa1339060:intergenic |
| TTTGGCTTCATGTCTACCAT+AGG | 0.530193 | tig0003030:-36373 | Msa1339060:intergenic |
| TGTACCCGGTAGTGTAATCT+GGG | 0.532124 | tig0003030:-36170 | Msa1339060:intergenic |
| TGTACCCGGTAGTGTAATCT+GGG | 0.532124 | tig0003030:-36311 | Msa1339060:intergenic |
| TTTGGCATCATGTCGACCAT+AGG | 0.533224 | tig0003030:-35950 | Msa1339060:intergenic |
| TCACTTGTCGGTGATGTGAA+TGG | 0.533840 | tig0003030:+37338 | Msa1339060:CDS |
| AAGAACTCAGATTACACTAC+CGG | 0.535594 | tig0003030:+36447 | Msa1339060:CDS |
| TCCATCCGATTCATGGGTAT+GGG | 0.541019 | tig0003030:-36196 | Msa1339060:intergenic |
| CATATACCCATGAACCCAAT+GGG | 0.544483 | tig0003030:+35632 | Msa1339060:CDS |
| TGATATTGATGCTCCCAAAT+GGG | 0.545823 | tig0003030:+37235 | Msa1339060:CDS |
| TCCATCAGATTCATGGGTAT+GGG | 0.546689 | tig0003030:-36337 | Msa1339060:intergenic |
| GGCAGCTTAGCATTAAGGCC+GGG | 0.548154 | tig0003030:+37432 | Msa1339060:CDS |
| AAGAACCAAGATTACACTAC+CGG | 0.548558 | tig0003030:+35883 | Msa1339060:CDS |
| AAGAACCAAGATTACACTAC+CGG | 0.548558 | tig0003030:+36024 | Msa1339060:CDS |
| GTAAGGTCCATCGGATTCAT+GGG | 0.549173 | tig0003030:-36061 | Msa1339060:intergenic |
| AATAACCTAGATTACACTGC+CGG | 0.550679 | tig0003030:+35601 | Msa1339060:CDS |
| AGGCAGCTTAGCATTAAGGC+CGG | 0.553688 | tig0003030:+37431 | Msa1339060:CDS |
| AAGAACCCAGATTACACTAC+CGG | 0.556042 | tig0003030:+36165 | Msa1339060:CDS |
| AAGAACCCAGATTACACTAC+CGG | 0.556042 | tig0003030:+36306 | Msa1339060:CDS |
| CTTTGCTTCTTGTTTATCGT+AGG | 0.558457 | tig0003030:-36622 | Msa1339060:intergenic |
| GTAAGGTCCATCAGATTCAT+GGG | 0.558575 | tig0003030:-36343 | Msa1339060:intergenic |
| GTAAGGTCCATCCGATTCAT+GGG | 0.558938 | tig0003030:-36202 | Msa1339060:intergenic |
| AAAGGAGAAACCACTTGGAC+GGG | 0.559421 | tig0003030:-36912 | Msa1339060:intergenic |
| TGTAAGGTTCATTGGATGCA+TGG | 0.559989 | tig0003030:-36485 | Msa1339060:intergenic |
| ACCCACAGAAGATGGTTCAC+AGG | 0.560222 | tig0003030:-37482 | Msa1339060:intergenic |
| TTGTGACATTGCAAGAGGAA+TGG | 0.560283 | tig0003030:-36958 | Msa1339060:intergenic |
| TTCTGTAAAGGGACAGCTGT+CGG | 0.562177 | tig0003030:-37188 | Msa1339060:intergenic |
| AGAGGAAAGGAGAAACCACT+TGG | 0.562679 | tig0003030:-36917 | Msa1339060:intergenic |
| TCTACTGGAAATGACCCAAA+AGG | 0.563730 | tig0003030:+36759 | Msa1339060:CDS |
| TTATCGTAGGAAGTTGTGTA+CGG | 0.567625 | tig0003030:-36609 | Msa1339060:intergenic |
| CGATCCAAGTTAGGAGATTG+GGG | 0.568061 | tig0003030:-36816 | Msa1339060:intergenic |
| GGAAGTTATGTAAGGTCCAT+CGG | 0.572040 | tig0003030:-36070 | Msa1339060:intergenic |
| ACCCATACCCATGAATCTGA+TGG | 0.573174 | tig0003030:+36336 | Msa1339060:CDS |
| ATGGGTATGGGTCTTGTACC+CGG | 0.573227 | tig0003030:-35902 | Msa1339060:intergenic |
| ATGGGTATGGGTCTTGTACC+CGG | 0.573227 | tig0003030:-36043 | Msa1339060:intergenic |
| ATGGGTATGGGTCTTGTACC+CGG | 0.573227 | tig0003030:-36184 | Msa1339060:intergenic |
| ATGGGTATGGGTCTTGTACC+CGG | 0.573227 | tig0003030:-36325 | Msa1339060:intergenic |
| TGTCGGTGAGGGTTTGTTGG+TGG | 0.574295 | tig0003030:-37171 | Msa1339060:intergenic |
| ACTGCCTATGGTAGACATGA+AGG | 0.576597 | tig0003030:+35664 | Msa1339060:CDS |
| ATGGGTATGGGTCTTGTACC+CGG | 0.577866 | tig0003030:-36466 | Msa1339060:intergenic |
| GAGCATGGACTCTAGAGAGT+TGG | 0.580577 | tig0003030:-37099 | Msa1339060:intergenic |
| TGATAGTTGGAGTCTTGGAG+AGG | 0.583237 | tig0003030:+34471 | Msa1339060:CDS |
| GTAAGGTTCATTGGATGCAT+GGG | 0.583311 | tig0003030:-36484 | Msa1339060:intergenic |
| TCCATCGGATTCATGGGTAT+GGG | 0.584499 | tig0003030:-36055 | Msa1339060:intergenic |
| CCTTCAATTTCCCGTCCAAG+TGG | 0.588140 | tig0003030:+36902 | Msa1339060:CDS |
| AAAGGGACAGCTGTCGGTGA+GGG | 0.588868 | tig0003030:-37182 | Msa1339060:intergenic |
| ACATATACCCATGAACCCAA+TGG | 0.592458 | tig0003030:+35631 | Msa1339060:CDS |
| ACCCATACCCATGAATCCAA+TGG | 0.594715 | tig0003030:+35913 | Msa1339060:CDS |
| ATAACCTAGATTACACTGCC+GGG | 0.596269 | tig0003030:+35602 | Msa1339060:CDS |
| ACCCATACCCATGAATCCGA+TGG | 0.597317 | tig0003030:+36054 | Msa1339060:CDS |
| GAAAGGAGAAACCACTTGGA+CGG | 0.598116 | tig0003030:-36913 | Msa1339060:intergenic |
| TTTGTCATTACATAGCTACA+GGG | 0.598347 | tig0003030:+37297 | Msa1339060:CDS |
| CACTTGGACGGGAAATTGAA+GGG | 0.598885 | tig0003030:-36901 | Msa1339060:intergenic |
| ACCCATACCCATGAATCGGA+TGG | 0.598944 | tig0003030:+36195 | Msa1339060:CDS |
| AAATCCATGATAAATTCACT+TGG | 0.603290 | tig0003030:+37032 | Msa1339060:CDS |
| GGGAGTTGTGACATTGCAAG+AGG | 0.609821 | tig0003030:-36963 | Msa1339060:intergenic |
| GCCAAACAATCAGAATCCAA+TGG | 0.613339 | tig0003030:+36531 | Msa1339060:CDS |
| AGAAGAAAAGAACTACTATG+AGG | 0.616332 | tig0003030:-34424 | Msa1339060:intergenic |
| AATAGCATATGGATATGAGA+GGG | 0.621995 | tig0003030:-37270 | Msa1339060:intergenic |
| AAATAGCATATGGATATGAG+AGG | 0.622204 | tig0003030:-37271 | Msa1339060:intergenic |
| CATGTCAACAAATTCGAGCA+TGG | 0.623516 | tig0003030:-37114 | Msa1339060:intergenic |
| AAAAGAGTTGAAGAACACTT+GGG | 0.624787 | tig0003030:-36983 | Msa1339060:intergenic |
| GCCAAACAACCAGATTCCAA+TGG | 0.625758 | tig0003030:+36108 | Msa1339060:CDS |
| GCCAAACAACCAGATTCCAA+TGG | 0.625758 | tig0003030:+36390 | Msa1339060:CDS |
| GCCGAACAACAAGAATCCAA+TGG | 0.625758 | tig0003030:+36585 | Msa1339060:CDS |
| GTGAATCGGAAACCATTACA+GGG | 0.628683 | tig0003030:+37060 | Msa1339060:CDS |
| GCCAAACAACCAGATTCCAA+TGG | 0.634974 | tig0003030:+35967 | Msa1339060:CDS |
| TAAAGGGACAGCTGTCGGTG+AGG | 0.638707 | tig0003030:-37183 | Msa1339060:intergenic |
| ACAGGTAAGAAGTGACACAT+TGG | 0.643260 | tig0003030:-37464 | Msa1339060:intergenic |
| ATGGGTATATGTCTTGCACC+CGG | 0.652014 | tig0003030:-35620 | Msa1339060:intergenic |
| AGAATCCATATTACACTACA+GGG | 0.656087 | tig0003030:+35743 | Msa1339060:CDS |
| ATAGCATATGGATATGAGAG+GGG | 0.656616 | tig0003030:-37269 | Msa1339060:intergenic |
| AGAACTCAGATTACACTACC+GGG | 0.656771 | tig0003030:+36448 | Msa1339060:CDS |
| AGAACCAAGATTACACTACC+GGG | 0.659254 | tig0003030:+35884 | Msa1339060:CDS |
| AGAACCAAGATTACACTACC+GGG | 0.659254 | tig0003030:+36025 | Msa1339060:CDS |
| AGAACCCAGATTACACTACC+GGG | 0.659254 | tig0003030:+36166 | Msa1339060:CDS |
| AGAACCCAGATTACACTACC+GGG | 0.659254 | tig0003030:+36307 | Msa1339060:CDS |
| ATAGACCAACTCACTTCACA+TGG | 0.683921 | tig0003030:-37528 | Msa1339060:intergenic |
| GACCAACTCACTTCACATGG+TGG | 0.684974 | tig0003030:-37525 | Msa1339060:intergenic |
| TGAATCGGAAACCATTACAG+GGG | 0.744089 | tig0003030:+37061 | Msa1339060:CDS |
| GATCCAAGTTAGGAGATTGG+GGG | 0.750379 | tig0003030:-36815 | Msa1339050:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATCACTTTTTTTTTTTTT+AGG | + | tig0003030:35114-35133 | Msa1339060:intron | 10.0% |
| !! | AAGTAAATTATTTATCTTCA+AGG | - | tig0003030:34708-34727 | Msa1339060:intergenic | 15.0% |
| !!! | TATAACTGTTTTTTTTTTGA+AGG | + | tig0003030:34768-34787 | Msa1339060:intron | 15.0% |
| !! | TAATTGAATATTTGATTATG+CGG | - | tig0003030:34857-34876 | Msa1339060:intergenic | 15.0% |
| !! | AAAAAAGTGATTATATACAA+TGG | - | tig0003030:35107-35126 | Msa1339060:intergenic | 15.0% |
| !!! | TATTTTATTTTTCTTCTGTT+TGG | + | tig0003030:35244-35263 | Msa1339060:intron | 15.0% |
| !! | TTTGATCAAGTTATTAGATA+CGG | + | tig0003030:34525-34544 | Msa1339060:intron | 20.0% |
| !! | CAATAAGTGATTATATACAA+TGG | - | tig0003030:35143-35162 | Msa1339060:intergenic | 20.0% |
| !! | AATATAGTAGTATATCAACT+TGG | + | tig0003030:35367-35386 | Msa1339060:intron | 20.0% |
| !! | TTGAAATATTGAGTAATGTA+AGG | - | tig0003030:35571-35590 | Msa1339060:intergenic | 20.0% |
| !! | TTGAAATATTGAGTTATGTA+AGG | - | tig0003030:35712-35731 | Msa1339060:intergenic | 20.0% |
| !! | TTGAAATATTGAGTTATGTA+AGG | - | tig0003030:35712-35731 | Msa1339060:intergenic | 20.0% |
| !! | AGTAGTTCTTTTCTTCTTTA+CGG | + | tig0003030:34430-34449 | Msa1339060:CDS | 25.0% |
| ! | TTGTCATAATATTTCAATCG+TGG | + | tig0003030:34619-34638 | Msa1339060:intron | 25.0% |
| !!! | CCTTTTTAAGTAGTTATTGT+CGG | + | tig0003030:34939-34958 | Msa1339060:intron | 25.0% |
| !! | AGTTAGAAGAAATTTTACGA+GGG | - | tig0003030:35081-35100 | Msa1339060:intergenic | 25.0% |
| !! | AAGTTAGAAGAAATTTTACG+AGG | - | tig0003030:35082-35101 | Msa1339060:intergenic | 25.0% |
| ! | TCAATATTCTACAAAACTCT+AGG | + | tig0003030:35214-35233 | Msa1339060:intron | 25.0% |
| !!! | ATTCTGTTTGGTTTGATTAA+AGG | + | tig0003030:35285-35304 | Msa1339060:intron | 25.0% |
| !! | ATTTTCTTCTTCTTGGTTAA+AGG | + | tig0003030:35320-35339 | Msa1339060:intron | 25.0% |
| ! | ATCAACTTGGATAATCAATA+AGG | + | tig0003030:35380-35399 | Msa1339060:intron | 25.0% |
| !!! | TTTCCATATTGAGTTTTGTA+AGG | - | tig0003030:35994-36013 | Msa1339060:intergenic | 25.0% |
| !!! | TTACCATATTGAGTTTTGTA+AGG | - | tig0003030:36135-36154 | Msa1339060:intergenic | 25.0% |
| !!! | TTACCATATTGAGTTTTGTA+AGG | - | tig0003030:36135-36154 | Msa1339060:intergenic | 25.0% |
| !!! | TTACCATATTGAGTTTTGTA+AGG | - | tig0003030:36135-36154 | Msa1339060:intergenic | 25.0% |
| ! | TTACCATATTGAGTTATGTA+AGG | - | tig0003030:36558-36577 | Msa1339060:intergenic | 25.0% |
| ! | GTACAATTCATTAGATTCAT+GGG | - | tig0003030:36682-36701 | Msa1339060:intergenic | 25.0% |
| ! | AATTTGGATGATCTTTATGT+TGG | + | tig0003030:36867-36886 | Msa1339060:CDS | 25.0% |
| ! | AAATCCATGATAAATTCACT+TGG | + | tig0003030:37032-37051 | Msa1339060:CDS | 25.0% |
| ! | ATCATGTGATATTTCCAAAA+TGG | - | tig0003030:37219-37238 | Msa1339060:intergenic | 25.0% |
| ! | TGACAAAAGTAAATAGCATA+TGG | - | tig0003030:37284-37303 | Msa1339060:intergenic | 25.0% |
| ! | ACCCAGATCATATAATATTT+AGG | + | tig0003030:37411-37430 | Msa1339060:CDS | 25.0% |
| ! | GCCTAAATATTATATGATCT+GGG | - | tig0003030:37415-37434 | Msa1339060:intergenic | 25.0% |
| ! | TGCCTAAATATTATATGATC+TGG | - | tig0003030:37416-37435 | Msa1339060:intergenic | 25.0% |
| AGAAGAAAAGAACTACTATG+AGG | - | tig0003030:34427-34446 | Msa0078600:intergenic | 30.0% | |
| CAATTGTACATAGTGATAGT+TGG | + | tig0003030:34458-34477 | Msa1339060:CDS | 30.0% | |
| CAAACAAGGCAATTTCTATT+GGG | + | tig0003030:34681-34700 | Msa1339060:intron | 30.0% | |
| CCGACAATAACTACTTAAAA+AGG | - | tig0003030:34942-34961 | Msa1339060:intergenic | 30.0% | |
| ! | GCTTTAATTTACGTTTCTGA+TGG | + | tig0003030:34981-35000 | Msa1339060:intron | 30.0% |
| ! | TTTTTGAACAGCATTCTGTT+TGG | + | tig0003030:35273-35292 | Msa1339060:intron | 30.0% |
| GAAGAAGAAAATTAACTGCA+AGG | - | tig0003030:35312-35331 | Msa1339060:intergenic | 30.0% | |
| ! | GCAGTTAATTTTCTTCTTCT+TGG | + | tig0003030:35313-35332 | Msa1339060:intron | 30.0% |
| TGTAGTGTAATATGGATTCT+TGG | - | tig0003030:35743-35762 | Msa1339060:intergenic | 30.0% | |
| AAGAATCCATATTACACTAC+AGG | + | tig0003030:35742-35761 | Msa1339060:CDS | 30.0% | |
| AGAATCCATATTACACTACA+GGG | + | tig0003030:35743-35762 | Msa1339060:CDS | 30.0% | |
| TTTATTGGATTCATGGGTAT+GGG | - | tig0003030:35776-35795 | Msa1339060:intergenic | 30.0% | |
| GTAAGGTTTATTGGATTCAT+GGG | - | tig0003030:35782-35801 | Msa1339060:intergenic | 30.0% | |
| TGTAAGGTTTATTGGATTCA+TGG | - | tig0003030:35783-35802 | Msa1339060:intergenic | 30.0% | |
| GTACCATAGGAATTTATGTA+AGG | - | tig0003030:36222-36241 | Msa1339060:intergenic | 30.0% | |
| GCCAAACAAACAAATTCAAA+CGG | + | tig0003030:36249-36268 | Msa1339060:CDS | 30.0% | |
| ! | TCCGTTTGAATTTGTTTGTT+TGG | - | tig0003030:36253-36272 | Msa1339060:intergenic | 30.0% |
| CGTACAATTCATTAGATTCA+TGG | - | tig0003030:36683-36702 | Msa1339060:intergenic | 30.0% | |
| ATGTACCTGATAAGGTAATT+TGG | - | tig0003030:36738-36757 | Msa1339060:intergenic | 30.0% | |
| !! | CAAGGTAGGATTTTTCAATT+TGG | + | tig0003030:36851-36870 | Msa1339060:CDS | 30.0% |
| AAAAGAGTTGAAGAACACTT+GGG | - | tig0003030:36986-37005 | Msa1339060:intergenic | 30.0% | |
| !! | TTTATCATGGATTTAGCTTG+AGG | - | tig0003030:37026-37045 | Msa1339060:intergenic | 30.0% |
| !! | GAATTTGTTGACATGATCAT+TGG | + | tig0003030:37122-37141 | Msa1339060:CDS | 30.0% |
| AAATGGTGTACTTCTGTAAA+GGG | - | tig0003030:37202-37221 | Msa1339060:intergenic | 30.0% | |
| AAAATGGTGTACTTCTGTAA+AGG | - | tig0003030:37203-37222 | Msa1339060:intergenic | 30.0% | |
| !! | TTTACAGAAGTACACCATTT+TGG | + | tig0003030:37202-37221 | Msa1339060:CDS | 30.0% |
| AATAGCATATGGATATGAGA+GGG | - | tig0003030:37273-37292 | Msa1339060:intergenic | 30.0% | |
| AAATAGCATATGGATATGAG+AGG | - | tig0003030:37274-37293 | Msa1339060:intergenic | 30.0% | |
| ! | TTTTGTCATTACATAGCTAC+AGG | + | tig0003030:37296-37315 | Msa1339060:CDS | 30.0% |
| TTTGTCATTACATAGCTACA+GGG | + | tig0003030:37297-37316 | Msa1339060:CDS | 30.0% | |
| TGATGTGAATGGAGATAAAA+TGG | + | tig0003030:37349-37368 | Msa1339060:CDS | 30.0% | |
| GATCAAGTTATTAGATACGG+AGG | + | tig0003030:34528-34547 | Msa1339060:intron | 35.0% | |
| TTAGATACGGAGGAAAAAAG+AGG | + | tig0003030:34538-34557 | Msa1339060:intron | 35.0% | |
| TAGATACGGAGGAAAAAAGA+GGG | + | tig0003030:34539-34558 | Msa1339060:intron | 35.0% | |
| !! | TTGCCTTGTTTGGTTCATTA+CGG | - | tig0003030:34673-34692 | Msa1339060:intergenic | 35.0% |
| ! | CCAATAGAAATTGCCTTGTT+TGG | - | tig0003030:34683-34702 | Msa1339060:intergenic | 35.0% |
| CCAAACAAGGCAATTTCTAT+TGG | + | tig0003030:34680-34699 | Msa1339060:intron | 35.0% | |
| !!! | GTTTCACGTTTTAACTGCAA+AGG | - | tig0003030:35347-35366 | Msa1339060:intergenic | 35.0% |
| TCATTGTCGTCATTGTAGAT+TGG | + | tig0003030:35475-35494 | Msa1339060:intron | 35.0% | |
| GTTTATCATTCGAGTCCATT+TGG | - | tig0003030:35549-35568 | Msa1339060:intergenic | 35.0% | |
| AATAACCTAGATTACACTGC+CGG | + | tig0003030:35601-35620 | Msa1339060:CDS | 35.0% | |
| TTGAGTTATGTAAGGTGCAT+TGG | - | tig0003030:35704-35723 | Msa1339060:intergenic | 35.0% | |
| TTGTACCCTGTAGTGTAATA+TGG | - | tig0003030:35751-35770 | Msa1339060:intergenic | 35.0% | |
| GTTTATTGGATTCATGGGTA+TGG | - | tig0003030:35777-35796 | Msa1339060:intergenic | 35.0% | |
| GGTTGTTGTGTAAGGTTTAT+TGG | - | tig0003030:35791-35810 | Msa1339060:intergenic | 35.0% | |
| AAACCTTACACAACAACCTA+TGG | + | tig0003030:35793-35812 | Msa1339060:CDS | 35.0% | |
| TTGAGTTATGTAAGGTGCAT+TGG | - | tig0003030:35704-35723 | Msa1339060:intergenic | 35.0% | |
| AAGAACCAAGATTACACTAC+CGG | + | tig0003030:35883-35902 | Msa1339060:CDS | 35.0% | |
| !! | TTGAGTTTTGTAAGGTCCAT+TGG | - | tig0003030:35986-36005 | Msa1339060:intergenic | 35.0% |
| GGACCTTACAAAACTCAATA+TGG | + | tig0003030:35988-36007 | Msa1339060:CDS | 35.0% | |
| AAGAACCAAGATTACACTAC+CGG | + | tig0003030:35883-35902 | Msa1339060:CDS | 35.0% | |
| CTACCATAGGAAGTTATGTA+AGG | - | tig0003030:36081-36100 | Msa1339060:intergenic | 35.0% | |
| !! | TTGAGTTTTGTAAGGTCCAT+TGG | - | tig0003030:35986-36005 | Msa1339060:intergenic | 35.0% |
| GGACCTTACAAAACTCAATA+TGG | + | tig0003030:35988-36007 | Msa1339060:CDS | 35.0% | |
| GGACCTTACATAAATTCCTA+TGG | + | tig0003030:36216-36235 | Msa1339060:CDS | 35.0% | |
| GGACCTTACAAAACTCAATA+TGG | + | tig0003030:35988-36007 | Msa1339060:CDS | 35.0% | |
| CTACCATAGGAAGTTATGTA+AGG | - | tig0003030:36081-36100 | Msa1339060:intergenic | 35.0% | |
| !! | TTGAGTTTTGTAAGGTCCAT+TGG | - | tig0003030:35986-36005 | Msa1339060:intergenic | 35.0% |
| GGACCTTACAAAACTCAATA+TGG | + | tig0003030:35988-36007 | Msa1339060:CDS | 35.0% | |
| AAGAACTCAGATTACACTAC+CGG | + | tig0003030:36447-36466 | Msa1339060:CDS | 35.0% | |
| TTACCATATGCAGTGTTGTA+AGG | - | tig0003030:36504-36523 | Msa1339060:intergenic | 35.0% | |
| TCCATTGGATTCTGATTGTT+TGG | - | tig0003030:36535-36554 | Msa1339060:intergenic | 35.0% | |
| TTGAGTTATGTAAGGTCCAT+TGG | - | tig0003030:36550-36569 | Msa1339060:intergenic | 35.0% | |
| GGACCTTACATAACTCAATA+TGG | + | tig0003030:36552-36571 | Msa1339060:CDS | 35.0% | |
| !! | TCCATTGGATTCTTGTTGTT+CGG | - | tig0003030:36589-36608 | Msa1339060:intergenic | 35.0% |
| TTATCGTAGGAAGTTGTGTA+CGG | - | tig0003030:36612-36631 | Msa1339060:intergenic | 35.0% | |
| ! | CTTTGCTTCTTGTTTATCGT+AGG | - | tig0003030:36625-36644 | Msa1339060:intergenic | 35.0% |
| ! | ATGGGTTTGAGTCTTATATC+TGG | - | tig0003030:36664-36683 | Msa1339060:intergenic | 35.0% |
| GAATTGTACGTATCTGCATA+TGG | + | tig0003030:36693-36712 | Msa1339060:CDS | 35.0% | |
| AATTTGGTTGCTTGGTTTCA+TGG | - | tig0003030:36722-36741 | Msa1339060:intergenic | 35.0% | |
| GATAAGGTAATTTGGTTGCT+TGG | - | tig0003030:36730-36749 | Msa1339060:intergenic | 35.0% | |
| AGCAACCAAATTACCTTATC+AGG | + | tig0003030:36730-36749 | Msa1339060:CDS | 35.0% | |
| CAGTAGATATGTACCTGATA+AGG | - | tig0003030:36746-36765 | Msa1339060:intergenic | 35.0% | |
| CTTATCAGGTACATATCTAC+TGG | + | tig0003030:36744-36763 | Msa1339060:CDS | 35.0% | |
| TCCTTTCCTCTCAAAAAAAG+AGG | + | tig0003030:36929-36948 | Msa1339060:CDS | 35.0% | |
| !!! | ACCTCTTTTTTTGAGAGGAA+AGG | - | tig0003030:36933-36952 | Msa1339060:intergenic | 35.0% |
| !!! | AGTCAACCTCTTTTTTTGAG+AGG | - | tig0003030:36938-36957 | Msa1339060:intergenic | 35.0% |
| GAAAAGAGTTGAAGAACACT+TGG | - | tig0003030:36987-37006 | Msa1339060:intergenic | 35.0% | |
| CTCTCCAAGTGAATTTATCA+TGG | - | tig0003030:37039-37058 | Msa1339060:intergenic | 35.0% | |
| ATGATATTGATGCTCCCAAA+TGG | + | tig0003030:37234-37253 | Msa1339060:CDS | 35.0% | |
| TGATATTGATGCTCCCAAAT+GGG | + | tig0003030:37235-37254 | Msa1339060:CDS | 35.0% | |
| ATAGCATATGGATATGAGAG+GGG | - | tig0003030:37272-37291 | Msa1339060:intergenic | 35.0% | |
| ATTTAGGCAGCTTAGCATTA+AGG | + | tig0003030:37427-37446 | Msa1339060:CDS | 35.0% | |
| CATAGTGATAGTTGGAGTCT+TGG | + | tig0003030:34466-34485 | Msa1339060:CDS | 40.0% | |
| TGGTTCATTACGGGAAAATG+AGG | - | tig0003030:34663-34682 | Msa1339060:intergenic | 40.0% | |
| TTCCCGTAATGAACCAAACA+AGG | + | tig0003030:34667-34686 | Msa1339060:intron | 40.0% | |
| !! | TGCCTTGTTTGGTTCATTAC+GGG | - | tig0003030:34672-34691 | Msa1339060:intergenic | 40.0% |
| GGCAGTGTAATCTAGGTTAT+TGG | - | tig0003030:35602-35621 | Msa1339060:intergenic | 40.0% | |
| ATAACCTAGATTACACTGCC+GGG | + | tig0003030:35602-35621 | Msa1339060:CDS | 40.0% | |
| ACATATACCCATGAACCCAA+TGG | + | tig0003030:35631-35650 | Msa1339060:CDS | 40.0% | |
| CATATACCCATGAACCCAAT+GGG | + | tig0003030:35632-35651 | Msa1339060:CDS | 40.0% | |
| CTACCATAGGCAGTTATGTA+AGG | - | tig0003030:35658-35677 | Msa1339060:intergenic | 40.0% | |
| TTTGCCTTCATGTCTACCAT+AGG | - | tig0003030:35671-35690 | Msa1339060:intergenic | 40.0% | |
| TAGACATGAAGGCAAACAAC+CGG | + | tig0003030:35675-35694 | Msa1339060:CDS | 40.0% | |
| ATGTAAGGTGCATTGGAATC+CGG | - | tig0003030:35697-35716 | Msa1339060:intergenic | 40.0% | |
| CTACCATAGGTTGTTGTGTA+AGG | - | tig0003030:35799-35818 | Msa1339060:intergenic | 40.0% | |
| ! | TTTGGGTTCAAGTCTACCAT+AGG | - | tig0003030:35812-35831 | Msa1339060:intergenic | 40.0% |
| GCATTGGAATCTGGTTGTTT+GGG | - | tig0003030:35829-35848 | Msa1339060:intergenic | 40.0% | |
| TGCATTGGAATCTGGTTGTT+TGG | - | tig0003030:35830-35849 | Msa1339060:intergenic | 40.0% | |
| ATGTAAGGTGCATTGGAATC+TGG | - | tig0003030:35697-35716 | Msa1339060:intergenic | 40.0% | |
| ! | GGTAGTGTAATCTTGGTTCT+TGG | - | tig0003030:35884-35903 | Msa1339060:intergenic | 40.0% |
| AGAACCAAGATTACACTACC+GGG | + | tig0003030:35884-35903 | Msa1339060:CDS | 40.0% | |
| TCCATTGGATTCATGGGTAT+GGG | - | tig0003030:35917-35936 | Msa1339060:intergenic | 40.0% | |
| GTAAGGTCCATTGGATTCAT+GGG | - | tig0003030:35923-35942 | Msa1339060:intergenic | 40.0% | |
| TGTAAGGTCCATTGGATTCA+TGG | - | tig0003030:35924-35943 | Msa1339060:intergenic | 40.0% | |
| GGAAGTTATGTAAGGTCCAT+TGG | - | tig0003030:35932-35951 | Msa1339060:intergenic | 40.0% | |
| GGACCTTACATAACTTCCTA+TGG | + | tig0003030:35934-35953 | Msa1339060:CDS | 40.0% | |
| CGACCATAGGAAGTTATGTA+AGG | - | tig0003030:35940-35959 | Msa1339060:intergenic | 40.0% | |
| TCCATTGGAATCTGGTTGTT+TGG | - | tig0003030:35971-35990 | Msa1339060:intergenic | 40.0% | |
| TTGTAAGGTCCATTGGAATC+TGG | - | tig0003030:35979-35998 | Msa1339060:intergenic | 40.0% | |
| ! | GGTAGTGTAATCTTGGTTCT+TGG | - | tig0003030:35884-35903 | Msa1339060:intergenic | 40.0% |
| AGAACCAAGATTACACTACC+GGG | + | tig0003030:35884-35903 | Msa1339060:CDS | 40.0% | |
| GGAAGTTATGTAAGGTCCAT+CGG | - | tig0003030:35932-35951 | Msa1339060:intergenic | 40.0% | |
| GGACCTTACATAACTTCCTA+TGG | + | tig0003030:35934-35953 | Msa1339060:CDS | 40.0% | |
| ! | TTTGGCTTCATGTCTACCAT+AGG | - | tig0003030:36094-36113 | Msa1339060:intergenic | 40.0% |
| TCCATTGGAATCTGGTTGTT+TGG | - | tig0003030:35971-35990 | Msa1339060:intergenic | 40.0% | |
| TTGTAAGGTCCATTGGAATC+TGG | - | tig0003030:35979-35998 | Msa1339060:intergenic | 40.0% | |
| AAGAACCCAGATTACACTAC+CGG | + | tig0003030:36165-36184 | Msa1339060:CDS | 40.0% | |
| ! | TTTGGCTTCATGTGTACCAT+AGG | - | tig0003030:36235-36254 | Msa1339060:intergenic | 40.0% |
| AAGAACCCAGATTACACTAC+CGG | + | tig0003030:36165-36184 | Msa1339060:CDS | 40.0% | |
| TCCATCAGATTCATGGGTAT+GGG | - | tig0003030:36340-36359 | Msa1339060:intergenic | 40.0% | |
| GTAAGGTCCATCAGATTCAT+GGG | - | tig0003030:36346-36365 | Msa1339060:intergenic | 40.0% | |
| TGTAAGGTCCATCAGATTCA+TGG | - | tig0003030:36347-36366 | Msa1339060:intergenic | 40.0% | |
| GGACCTTACATAACTTCCTA+TGG | + | tig0003030:35934-35953 | Msa1339060:CDS | 40.0% | |
| ! | TTTGGCTTCATGTCTACCAT+AGG | - | tig0003030:36094-36113 | Msa1339060:intergenic | 40.0% |
| TCCATTGGAATCTGGTTGTT+TGG | - | tig0003030:35971-35990 | Msa1339060:intergenic | 40.0% | |
| TTGTAAGGTCCATTGGAATC+TGG | - | tig0003030:35979-35998 | Msa1339060:intergenic | 40.0% | |
| GGTAGTGTAATCTGAGTTCT+TGG | - | tig0003030:36448-36467 | Msa1339060:intergenic | 40.0% | |
| AGAACTCAGATTACACTACC+GGG | + | tig0003030:36448-36467 | Msa1339060:CDS | 40.0% | |
| TTCATTGGATGCATGGGTAT+GGG | - | tig0003030:36481-36500 | Msa1339060:intergenic | 40.0% | |
| GTAAGGTTCATTGGATGCAT+GGG | - | tig0003030:36487-36506 | Msa1339060:intergenic | 40.0% | |
| TGTAAGGTTCATTGGATGCA+TGG | - | tig0003030:36488-36507 | Msa1339060:intergenic | 40.0% | |
| TGCAGTGTTGTAAGGTTCAT+TGG | - | tig0003030:36496-36515 | Msa1339060:intergenic | 40.0% | |
| GAACCTTACAACACTGCATA+TGG | + | tig0003030:36498-36517 | Msa1339060:CDS | 40.0% | |
| GCCAAACAATCAGAATCCAA+TGG | + | tig0003030:36531-36550 | Msa1339060:CDS | 40.0% | |
| TCTACTGGAAATGACCCAAA+AGG | + | tig0003030:36759-36778 | Msa1339060:CDS | 40.0% | |
| !!! | GATCTTTTGAGGTGGTAGAT+GGG | - | tig0003030:36788-36807 | Msa1339060:intergenic | 40.0% |
| !!! | AGATCTTTTGAGGTGGTAGA+TGG | - | tig0003030:36789-36808 | Msa1339060:intergenic | 40.0% |
| ACCACCTCAAAAGATCTAGA+AGG | + | tig0003030:36792-36811 | Msa1339060:CDS | 40.0% | |
| ACGATCCAAGTTAGGAGATT+GGG | - | tig0003030:36820-36839 | Msa1339060:intergenic | 40.0% | |
| TACGATCCAAGTTAGGAGAT+TGG | - | tig0003030:36821-36840 | Msa1339060:intergenic | 40.0% | |
| TTGTGACATTGCAAGAGGAA+TGG | - | tig0003030:36961-36980 | Msa1339060:intergenic | 40.0% | |
| TAGCTTGAGGAGAATCTTCA+GGG | - | tig0003030:37013-37032 | Msa1339060:intergenic | 40.0% | |
| ! | TTAGCTTGAGGAGAATCTTC+AGG | - | tig0003030:37014-37033 | Msa1339060:intergenic | 40.0% |
| ! | TTCACTTGGAGAGTGTGAAT+CGG | + | tig0003030:37046-37065 | Msa1339060:CDS | 40.0% |
| TGTGAATCGGAAACCATTAC+AGG | + | tig0003030:37059-37078 | Msa1339060:CDS | 40.0% | |
| GTGAATCGGAAACCATTACA+GGG | + | tig0003030:37060-37079 | Msa1339060:CDS | 40.0% | |
| TGAATCGGAAACCATTACAG+GGG | + | tig0003030:37061-37080 | Msa1339060:CDS | 40.0% | |
| CATGTCAACAAATTCGAGCA+TGG | - | tig0003030:37117-37136 | Msa1339060:intergenic | 40.0% | |
| GGTGGTGAGAATACTATGTT+TGG | - | tig0003030:37156-37175 | Msa1339060:intergenic | 40.0% | |
| GGAGATAAAATGGAAGCTGT+TGG | + | tig0003030:37359-37378 | Msa1339060:CDS | 40.0% | |
| AGCTGTTGGAATTTGCCATT+TGG | + | tig0003030:37373-37392 | Msa1339060:CDS | 40.0% | |
| TCCAATCAGATGTGTCCAAA+TGG | - | tig0003030:37391-37410 | Msa1339060:intergenic | 40.0% | |
| ACAGGTAAGAAGTGACACAT+TGG | - | tig0003030:37467-37486 | Msa1339060:intergenic | 40.0% | |
| TGATAGTTGGAGTCTTGGAG+AGG | + | tig0003030:34471-34490 | Msa1339060:CDS | 45.0% | |
| GATAGTTGGAGTCTTGGAGA+GGG | + | tig0003030:34472-34491 | Msa1339060:CDS | 45.0% | |
| !! | AGTCTCTGGCATTGATGTCT+TGG | - | tig0003030:35501-35520 | Msa1339060:intergenic | 45.0% |
| CATCAATGCCAGAGACTTGA+AGG | + | tig0003030:35504-35523 | Msa1339060:CDS | 45.0% | |
| CAACTCTACCTTCAAGTCTC+TGG | - | tig0003030:35515-35534 | Msa1339060:intergenic | 45.0% | |
| GAAGGTAGAGTTGAGAGATC+AGG | + | tig0003030:35522-35541 | Msa1339060:CDS | 45.0% | |
| GTTGAGAGATCAGGACCAAA+TGG | + | tig0003030:35531-35550 | Msa1339060:CDS | 45.0% | |
| ATGGGTATATGTCTTGCACC+CGG | - | tig0003030:35623-35642 | Msa1339060:intergenic | 45.0% | |
| GCAGTTATGTAAGGCCCATT+GGG | - | tig0003030:35649-35668 | Msa1339060:intergenic | 45.0% | |
| ACTGCCTATGGTAGACATGA+AGG | + | tig0003030:35664-35683 | Msa1339060:CDS | 45.0% | |
| TGTACCCGGTAGTGTAATCT+TGG | - | tig0003030:35891-35910 | Msa1339060:intergenic | 45.0% | |
| ACCCATACCCATGAATCCAA+TGG | + | tig0003030:35772-35791 | Msa1339060:CDS | 45.0% | |
| GTCCATTGGATTCATGGGTA+TGG | - | tig0003030:35918-35937 | Msa1339060:intergenic | 45.0% | |
| TTTGGCATCATGTCGACCAT+AGG | - | tig0003030:35953-35972 | Msa1339060:intergenic | 45.0% | |
| GCCAAACAACCAGATTCCAA+TGG | + | tig0003030:35967-35986 | Msa1339060:CDS | 45.0% | |
| TGTACCCGGTAGTGTAATCT+TGG | - | tig0003030:35891-35910 | Msa1339060:intergenic | 45.0% | |
| TCCATCGGATTCATGGGTAT+GGG | - | tig0003030:36058-36077 | Msa1339060:intergenic | 45.0% | |
| GTAAGGTCCATCGGATTCAT+GGG | - | tig0003030:36064-36083 | Msa1339060:intergenic | 45.0% | |
| TGTAAGGTCCATCGGATTCA+TGG | - | tig0003030:36065-36084 | Msa1339060:intergenic | 45.0% | |
| GCCAAACAACCAGATTCCAA+TGG | + | tig0003030:35967-35986 | Msa1339060:CDS | 45.0% | |
| GGTAGTGTAATCTGGGTTCT+TGG | - | tig0003030:36166-36185 | Msa1339060:intergenic | 45.0% | |
| AGAACCCAGATTACACTACC+GGG | + | tig0003030:36166-36185 | Msa1339060:CDS | 45.0% | |
| TGTACCCGGTAGTGTAATCT+GGG | - | tig0003030:35891-35910 | Msa1339060:intergenic | 45.0% | |
| TTGTACCCGGTAGTGTAATC+TGG | - | tig0003030:35892-35911 | Msa1339060:intergenic | 45.0% | |
| CAAGACCCATACCCATGAAT+CGG | + | tig0003030:35768-35787 | Msa1339060:CDS | 45.0% | |
| TCCATCCGATTCATGGGTAT+GGG | - | tig0003030:36199-36218 | Msa1339060:intergenic | 45.0% | |
| GTAAGGTCCATCCGATTCAT+GGG | - | tig0003030:36205-36224 | Msa1339060:intergenic | 45.0% | |
| TGTAAGGTCCATCCGATTCA+TGG | - | tig0003030:36206-36225 | Msa1339060:intergenic | 45.0% | |
| GGTAGTGTAATCTGGGTTCT+TGG | - | tig0003030:36166-36185 | Msa1339060:intergenic | 45.0% | |
| AGAACCCAGATTACACTACC+GGG | + | tig0003030:36166-36185 | Msa1339060:CDS | 45.0% | |
| TGTACCCGGTAGTGTAATCT+GGG | - | tig0003030:35891-35910 | Msa1339060:intergenic | 45.0% | |
| TTGTACCCGGTAGTGTAATC+TGG | - | tig0003030:35892-35911 | Msa1339060:intergenic | 45.0% | |
| ACCCATACCCATGAATCTGA+TGG | + | tig0003030:36336-36355 | Msa1339060:CDS | 45.0% | |
| GTCCATCAGATTCATGGGTA+TGG | - | tig0003030:36341-36360 | Msa1339060:intergenic | 45.0% | |
| GCCAAACAACCAGATTCCAA+TGG | + | tig0003030:35967-35986 | Msa1339060:CDS | 45.0% | |
| GTTCATTGGATGCATGGGTA+TGG | - | tig0003030:36482-36501 | Msa1339060:intergenic | 45.0% | |
| GCCGAACAACAAGAATCCAA+TGG | + | tig0003030:36585-36604 | Msa1339060:CDS | 45.0% | |
| !! | GCCTTCTAGATCTTTTGAGG+TGG | - | tig0003030:36796-36815 | Msa1339060:intergenic | 45.0% |
| GATCCAAGTTAGGAGATTGG+GGG | - | tig0003030:36818-36837 | Msa1339060:intergenic | 45.0% | |
| CGATCCAAGTTAGGAGATTG+GGG | - | tig0003030:36819-36838 | Msa1339060:intergenic | 45.0% | |
| GCTTCTGTACGATCCAAGTT+AGG | - | tig0003030:36828-36847 | Msa1339060:intergenic | 45.0% | |
| GGATCGTACAGAAGCTTTCA+AGG | + | tig0003030:36833-36852 | Msa1339060:CDS | 45.0% | |
| CGTACAGAAGCTTTCAAGGT+AGG | + | tig0003030:36837-36856 | Msa1339060:CDS | 45.0% | |
| CACTTGGACGGGAAATTGAA+GGG | - | tig0003030:36904-36923 | Msa1339060:intergenic | 45.0% | |
| AAAGGAGAAACCACTTGGAC+GGG | - | tig0003030:36915-36934 | Msa1339060:intergenic | 45.0% | |
| GAAAGGAGAAACCACTTGGA+CGG | - | tig0003030:36916-36935 | Msa1339060:intergenic | 45.0% | |
| AGAGGAAAGGAGAAACCACT+TGG | - | tig0003030:36920-36939 | Msa1339060:intergenic | 45.0% | |
| TTCTGTAAAGGGACAGCTGT+CGG | - | tig0003030:37191-37210 | Msa1339060:intergenic | 45.0% | |
| GGATGACAAGCTACCCATTT+GGG | - | tig0003030:37251-37270 | Msa1339060:intergenic | 45.0% | |
| ! | TACAGGGACTAGAGTGTTCA+AGG | + | tig0003030:37313-37332 | Msa1339060:CDS | 45.0% |
| GTGTTCAAGGTCTCACTTGT+CGG | + | tig0003030:37326-37345 | Msa1339060:CDS | 45.0% | |
| TCACTTGTCGGTGATGTGAA+TGG | + | tig0003030:37338-37357 | Msa1339060:CDS | 45.0% | |
| GCCATTTGGACACATCTGAT+TGG | + | tig0003030:37387-37406 | Msa1339060:CDS | 45.0% | |
| ACACATTGGAGAGTTCTTCC+CGG | - | tig0003030:37453-37472 | Msa1339060:intergenic | 45.0% | |
| TACCTGTGAACCATCTTCTG+TGG | + | tig0003030:37480-37499 | Msa1339060:CDS | 45.0% | |
| ACCTGTGAACCATCTTCTGT+GGG | + | tig0003030:37481-37500 | Msa1339060:CDS | 45.0% | |
| !! | GTGGCTTTTGAAGGTTGCAT+TGG | - | tig0003030:37509-37528 | Msa1339060:intergenic | 45.0% |
| !!! | ACATTAATATTTTTTTTTTT+AGG | + | tig0003030:35403-35422 | Msa1339060:intron | 5.0% |
| !!! | CATTAATATTTTTTTTTTTA+GGG | + | tig0003030:35404-35423 | Msa1339060:intron | 5.0% |
| !!! | ATTAATATTTTTTTTTTTAG+GGG | + | tig0003030:35405-35424 | Msa1339060:intron | 5.0% |
| GTAAGGCCCATTGGGTTCAT+GGG | - | tig0003030:35641-35660 | Msa1339060:intergenic | 50.0% | |
| TGTAAGGCCCATTGGGTTCA+TGG | - | tig0003030:35642-35661 | Msa1339060:intergenic | 50.0% | |
| GGCAGTTATGTAAGGCCCAT+TGG | - | tig0003030:35650-35669 | Msa1339060:intergenic | 50.0% | |
| GGGCCTTACATAACTGCCTA+TGG | + | tig0003030:35652-35671 | Msa1339060:CDS | 50.0% | |
| ! | ATGGGTATGGGTCTTGTACC+CGG | - | tig0003030:35764-35783 | Msa1339060:intergenic | 50.0% |
| ! | ATGGGTATGGGTCTTGTACC+CGG | - | tig0003030:35764-35783 | Msa1339060:intergenic | 50.0% |
| ACCCATACCCATGAATCCGA+TGG | + | tig0003030:36054-36073 | Msa1339060:CDS | 50.0% | |
| GTCCATCGGATTCATGGGTA+TGG | - | tig0003030:36059-36078 | Msa1339060:intergenic | 50.0% | |
| ! | ATGGGTATGGGTCTTGTACC+CGG | - | tig0003030:35764-35783 | Msa1339060:intergenic | 50.0% |
| ACCCATACCCATGAATCGGA+TGG | + | tig0003030:36195-36214 | Msa1339060:CDS | 50.0% | |
| GTCCATCCGATTCATGGGTA+TGG | - | tig0003030:36200-36219 | Msa1339060:intergenic | 50.0% | |
| ! | ATGGGTATGGGTCTTGTACC+CGG | - | tig0003030:35764-35783 | Msa1339060:intergenic | 50.0% |
| ! | ATGGGTATGGGTCTTGTACC+CGG | - | tig0003030:35764-35783 | Msa1339060:intergenic | 50.0% |
| GGAAGTTGTGTACGGTCCAT+TGG | - | tig0003030:36604-36623 | Msa1339060:intergenic | 50.0% | |
| ! | TGGTAGATGGGTGGCCTTTT+GGG | - | tig0003030:36776-36795 | Msa1339060:intergenic | 50.0% |
| !!! | CTTTTGAGGTGGTAGATGGG+TGG | - | tig0003030:36785-36804 | Msa1339060:intergenic | 50.0% |
| ! | GGGGCCTTCTAGATCTTTTG+AGG | - | tig0003030:36799-36818 | Msa1339060:intergenic | 50.0% |
| CCACTTGGACGGGAAATTGA+AGG | - | tig0003030:36905-36924 | Msa1339060:intergenic | 50.0% | |
| CCTTCAATTTCCCGTCCAAG+TGG | + | tig0003030:36902-36921 | Msa1339060:CDS | 50.0% | |
| GGGAGTTGTGACATTGCAAG+AGG | - | tig0003030:36966-36985 | Msa1339060:intergenic | 50.0% | |
| CGTCTTTGTCTCCCCTGTAA+TGG | - | tig0003030:37075-37094 | Msa1339060:intergenic | 50.0% | |
| ! | GAGCATGGACTCTAGAGAGT+TGG | - | tig0003030:37102-37121 | Msa1339060:intergenic | 50.0% |
| GGGATGACAAGCTACCCATT+TGG | - | tig0003030:37252-37271 | Msa1339060:intergenic | 50.0% | |
| AGGCAGCTTAGCATTAAGGC+CGG | + | tig0003030:37431-37450 | Msa1339060:CDS | 50.0% | |
| ACCCACAGAAGATGGTTCAC+AGG | - | tig0003030:37485-37504 | Msa1339060:intergenic | 50.0% | |
| GCATTGGAACCCACAGAAGA+TGG | - | tig0003030:37493-37512 | Msa1339060:intergenic | 50.0% | |
| TGCACCCGGCAGTGTAATCT+AGG | - | tig0003030:35609-35628 | Msa1339060:intergenic | 55.0% | |
| ! | GTGGTAGATGGGTGGCCTTT+TGG | - | tig0003030:36777-36796 | Msa1339060:intergenic | 55.0% |
| AGGCCCCCAATCTCCTAACT+TGG | + | tig0003030:36812-36831 | Msa1339060:CDS | 55.0% | |
| !! | TGTCGGTGAGGGTTTGTTGG+TGG | - | tig0003030:37174-37193 | Msa1339060:intergenic | 55.0% |
| AGCTGTCGGTGAGGGTTTGT+TGG | - | tig0003030:37177-37196 | Msa1339060:intergenic | 55.0% | |
| AAAGGGACAGCTGTCGGTGA+GGG | - | tig0003030:37185-37204 | Msa1339060:intergenic | 55.0% | |
| TAAAGGGACAGCTGTCGGTG+AGG | - | tig0003030:37186-37205 | Msa1339060:intergenic | 55.0% | |
| GGCAGCTTAGCATTAAGGCC+GGG | + | tig0003030:37432-37451 | Msa1339060:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0003030 | gene | 34398 | 37535 | 34398 | ID=Msa1339060;Name=Msa1339060 |
| tig0003030 | mRNA | 34398 | 37535 | 34398 | ID=Msa1339060-mRNA-1;Parent=Msa1339060;Name=Msa1339060-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|0|0.5|2|0|712 |
| tig0003030 | exon | 34398 | 34493 | 34398 | ID=Msa1339060-mRNA-1:exon:1951;Parent=Msa1339060-mRNA-1 |
| tig0003030 | exon | 35493 | 37535 | 35493 | ID=Msa1339060-mRNA-1:exon:1952;Parent=Msa1339060-mRNA-1 |
| tig0003030 | CDS | 34398 | 34493 | 34398 | ID=Msa1339060-mRNA-1:cds;Parent=Msa1339060-mRNA-1 |
| tig0003030 | CDS | 35493 | 37535 | 35493 | ID=Msa1339060-mRNA-1:cds;Parent=Msa1339060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
