AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1339970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1339970 MtrunA17_Chr4g0060121 92.884 267 12 3 1 266 128 388 0.0 505
Msa1339970 MtrunA17_Chr4g0060161 92.884 267 12 3 1 266 128 388 0.0 505
Msa1339970 MtrunA17_Chr2g0307531 57.249 269 102 7 1 265 303 562 2.17e-93 286
Msa1339970 MtrunA17_Chr1g0175981 52.788 269 108 9 3 264 143 399 1.14e-77 240
Msa1339970 MtrunA17_Chr1g0171401 53.137 271 107 9 3 264 146 405 2.38e-76 237
Msa1339970 MtrunA17_Chr8g0389201 53.818 275 101 10 3 266 138 397 7.31e-76 236
Msa1339970 MtrunA17_Chr8g0361601 58.333 204 77 4 1 200 124 323 1.14e-72 225
Msa1339970 MtrunA17_Chr1g0201051 48.327 269 112 11 2 258 106 359 1.19e-66 212
Msa1339970 MtrunA17_Chr1g0201191 50.741 270 105 11 3 264 142 391 1.71e-66 211
Msa1339970 MtrunA17_Chr1g0201221 48.708 271 107 13 3 265 129 375 1.83e-62 201
Msa1339970 MtrunA17_Chr2g0303021 49.640 278 109 16 3 264 123 385 2.57e-58 190
Msa1339970 MtrunA17_Chr2g0303001 45.421 273 118 11 3 263 120 373 5.11e-58 189
Msa1339970 MtrunA17_Chr5g0405671 46.953 279 115 12 2 265 119 379 6.50e-57 186
Msa1339970 MtrunA17_Chr2g0303031 46.545 275 114 13 3 264 119 373 1.30e-56 185
Msa1339970 MtrunA17_Chr2g0303011 46.570 277 114 14 3 263 123 381 3.03e-55 182
Msa1339970 MtrunA17_Chr2g0303171 43.750 288 119 12 3 262 124 396 3.21e-54 181
Msa1339970 MtrunA17_Chr2g0302981 44.485 272 125 11 2 264 139 393 4.26e-54 179
Msa1339970 MtrunA17_Chr1g0201061 44.578 249 117 9 27 262 23 263 1.10e-49 164
Msa1339970 MtrunA17_Chr1g0199281 42.678 239 112 7 3 234 152 372 1.55e-45 157
Msa1339970 MtrunA17_Chr2g0287071 36.594 276 142 11 3 264 113 369 1.25e-38 138
Msa1339970 MtrunA17_Chr1g0201201 50.633 158 64 6 2 155 4 151 2.02e-38 132
Msa1339970 MtrunA17_Chr2g0292331 37.545 277 137 15 3 264 148 403 4.38e-37 135
Msa1339970 MtrunA17_Chr2g0287111 36.630 273 147 13 4 264 76 334 3.05e-33 123
Msa1339970 MtrunA17_Chr2g0317091 34.559 272 148 10 4 264 48 300 5.54e-32 119
Msa1339970 MtrunA17_Chr2g0287121 36.462 277 142 14 3 264 116 373 1.74e-31 119
Msa1339970 MtrunA17_Chr3g0078471 32.374 278 154 10 1 264 130 387 1.68e-29 114
Msa1339970 MtrunA17_Chr3g0091191 41.500 200 86 11 3 194 121 297 4.48e-28 110
Msa1339970 MtrunA17_Chr3g0080511 33.803 284 153 14 3 264 332 602 1.16e-27 111
Msa1339970 MtrunA17_Chr3g0078431 33.929 280 144 11 4 263 144 402 1.14e-26 107
Msa1339970 MtrunA17_Chr2g0317101 35.426 223 120 7 6 221 133 338 1.23e-26 106
Msa1339970 MtrunA17_Chr3g0079621 34.632 231 123 11 4 221 127 342 8.11e-26 104
Msa1339970 MtrunA17_Chr6g0477631 34.686 271 147 12 4 264 109 359 1.59e-25 103
Msa1339970 MtrunA17_Chr3g0078461 34.286 280 143 12 4 263 144 402 1.65e-25 103
Msa1339970 MtrunA17_Chr5g0423801 31.868 273 157 13 4 265 141 395 1.77e-25 103
Msa1339970 MtrunA17_Chr7g0236821 30.844 308 149 13 3 263 123 413 2.26e-25 103
Msa1339970 MtrunA17_Chr3g0080461 34.317 271 145 12 1 264 138 382 2.85e-25 103
Msa1339970 MtrunA17_Chr6g0461091 33.103 290 153 14 1 264 55 329 3.55e-25 102
Msa1339970 MtrunA17_Chr3g0121321 32.061 262 160 8 6 264 177 423 3.75e-25 103
Msa1339970 MtrunA17_Chr6g0461101 32.414 290 149 14 1 264 107 375 6.14e-25 102
Msa1339970 MtrunA17_Chr3g0080471 33.088 272 141 13 3 264 152 392 7.47e-25 102
Msa1339970 MtrunA17_Chr7g0235861 31.579 285 138 14 3 258 134 390 8.69e-25 102
Msa1339970 MtrunA17_Chr3g0078391 35.319 235 121 10 4 222 151 370 9.31e-25 102
Msa1339970 MtrunA17_Chr6g0450771 30.282 284 163 13 1 264 122 390 1.49e-24 101
Msa1339970 MtrunA17_Chr5g0398251 35.961 203 109 8 3 195 115 306 1.74e-24 100
Msa1339970 MtrunA17_Chr3g0081931 33.455 275 152 11 3 264 132 388 2.12e-24 100
Msa1339970 MtrunA17_Chr3g0078161 32.342 269 148 11 6 264 126 370 2.54e-24 100
Msa1339970 MtrunA17_Chr3g0082421 33.213 277 149 13 4 264 122 378 2.88e-24 100
Msa1339970 MtrunA17_Chr5g0395401 31.915 282 159 11 3 264 111 379 2.88e-24 100
Msa1339970 MtrunA17_Chr7g0214991 32.180 289 145 14 4 264 134 399 4.14e-24 100
Msa1339970 MtrunA17_Chr7g0238861 31.308 214 129 6 3 199 127 339 4.39e-24 100
Msa1339970 MtrunA17_Chr4g0014071 35.749 207 107 6 2 195 97 290 4.92e-24 99.4
Msa1339970 MtrunA17_Chr3g0094241 31.716 268 159 11 4 264 149 399 5.31e-24 99.8
Msa1339970 MtrunA17_Chr6g0457201 32.110 218 115 9 3 194 123 333 7.57e-24 99.4
Msa1339970 MtrunA17_Chr1g0212221 31.541 279 144 12 4 264 118 367 1.58e-23 98.2
Msa1339970 MtrunA17_Chr5g0423791 30.935 278 152 14 4 264 141 395 2.19e-23 97.8
Msa1339970 MtrunA17_Chr3g0086501 32.746 284 145 15 2 264 57 315 2.61e-23 96.7
Msa1339970 MtrunA17_Chr7g0236001 31.228 285 139 14 3 258 130 386 3.71e-23 97.4
Msa1339970 MtrunA17_Chr4g0019271 29.010 293 166 13 3 265 115 395 5.13e-23 97.1
Msa1339970 MtrunA17_Chr3g0079611 34.000 200 111 8 4 194 139 326 7.02e-23 96.7
Msa1339970 MtrunA17_Chr4g0030261 37.327 217 91 11 4 194 118 315 8.88e-23 96.3
Msa1339970 MtrunA17_Chr3g0080291 32.852 277 148 12 1 264 135 386 1.16e-22 95.9
Msa1339970 MtrunA17_Chr7g0228911 32.482 274 153 14 4 264 136 390 1.34e-22 95.9
Msa1339970 MtrunA17_Chr6g0457171 33.032 221 120 12 3 199 106 322 1.44e-22 95.9
Msa1339970 MtrunA17_Chr4g0027011 32.975 279 156 11 2 264 124 387 1.59e-22 95.5
Msa1339970 MtrunA17_Chr3g0078231 33.663 202 115 7 3 194 144 336 1.63e-22 95.9
Msa1339970 MtrunA17_Chr3g0080301 32.258 248 124 10 3 239 138 352 2.24e-22 95.1
Msa1339970 MtrunA17_Chr3g0091221 33.096 281 142 14 4 264 141 395 2.37e-22 95.1
Msa1339970 MtrunA17_Chr3g0078211 31.760 233 128 7 4 215 19 241 2.47e-22 93.6
Msa1339970 MtrunA17_Chr3g0081901 31.469 286 145 13 4 264 148 407 3.38e-22 94.7
Msa1339970 MtrunA17_Chr3g0088911 32.014 278 160 12 2 264 128 391 5.27e-22 94.0
Msa1339970 MtrunA17_Chr7g0234911 29.492 295 142 16 1 238 116 401 1.02e-21 93.6
Msa1339970 MtrunA17_Chr7g0229701 31.780 236 142 6 33 264 97 317 1.10e-21 92.4
Msa1339970 MtrunA17_Chr5g0423781 30.515 272 151 12 3 264 140 383 1.10e-21 93.2
Msa1339970 MtrunA17_Chr3g0090591 30.466 279 158 12 4 264 133 393 1.39e-21 92.8
Msa1339970 MtrunA17_Chr6g0449371 33.990 203 118 7 3 194 117 314 1.51e-21 92.8
Msa1339970 MtrunA17_Chr3g0078421 34.653 202 111 9 4 194 124 315 1.64e-21 92.4
Msa1339970 MtrunA17_Chr7g0236331 31.336 217 127 10 3 199 117 331 1.68e-21 92.8
Msa1339970 MtrunA17_Chr6g0458161 31.769 277 161 14 3 264 119 382 1.83e-21 92.4
Msa1339970 MtrunA17_Chr7g0234941 29.831 295 141 17 1 238 116 401 1.94e-21 92.8
Msa1339970 MtrunA17_Chr4g0072971 33.482 224 114 13 3 199 119 334 3.14e-21 91.7
Msa1339970 MtrunA17_Chr1g0176891 34.783 207 109 9 2 195 104 297 3.23e-21 91.7
Msa1339970 MtrunA17_Chr3g0130191 30.855 269 144 11 4 264 61 295 3.33e-21 90.5
Msa1339970 MtrunA17_Chr2g0301321 32.645 242 122 12 3 223 134 355 3.68e-21 91.3
Msa1339970 MtrunA17_Chr6g0470221 30.797 276 170 9 3 265 125 392 3.70e-21 91.7
Msa1339970 MtrunA17_Chr7g0257571 31.466 232 116 10 3 201 129 350 4.20e-21 92.0
Msa1339970 MtrunA17_Chr6g0453851 30.545 275 164 12 4 264 132 393 4.39e-21 91.7
Msa1339970 MtrunA17_Chr7g0243791 29.338 317 158 14 3 263 114 420 4.42e-21 91.7
Msa1339970 MtrunA17_Chr5g0419931 30.216 278 149 11 6 264 100 351 4.43e-21 90.9
Msa1339970 MtrunA17_Chr2g0301311 31.673 281 142 13 3 258 133 388 5.07e-21 91.7
Msa1339970 MtrunA17_Chr3g0078451 32.735 223 122 9 51 265 4 206 6.00e-21 87.8
Msa1339970 MtrunA17_Chr3g0086491 31.621 253 145 11 4 253 150 377 6.03e-21 91.3
Msa1339970 MtrunA17_Chr6g0457191 30.698 215 123 9 3 194 80 291 6.24e-21 90.9
Msa1339970 MtrunA17_Chr2g0295641 32.482 274 151 15 3 264 46 297 8.07e-21 89.7
Msa1339970 MtrunA17_Chr5g0419911 30.216 278 149 12 6 264 3 254 8.12e-21 88.6
Msa1339970 MtrunA17_Chr2g0303301 31.628 215 109 9 4 191 119 322 8.97e-21 90.5
Msa1339970 MtrunA17_Chr7g0218951 30.894 246 152 8 3 236 126 365 9.55e-21 90.5
Msa1339970 MtrunA17_Chr3g0080191 35.407 209 109 10 4 194 136 336 1.01e-20 90.5
Msa1339970 MtrunA17_Chr3g0082011 28.667 300 159 12 4 264 103 386 1.30e-20 90.1
Msa1339970 MtrunA17_Chr7g0238881 28.966 290 167 11 3 264 119 397 1.37e-20 90.1
Msa1339970 MtrunA17_Chr3g0114671 31.502 273 133 13 3 248 130 375 1.65e-20 90.1
Msa1339970 MtrunA17_Chr4g0010531 27.758 281 169 10 3 263 96 362 1.75e-20 89.7
Msa1339970 MtrunA17_Chr7g0238791 29.187 209 122 6 2 192 138 338 1.80e-20 90.1
Msa1339970 MtrunA17_Chr7g0241011 29.592 294 169 12 3 265 118 404 1.91e-20 89.7
Msa1339970 MtrunA17_Chr7g0235421 31.364 220 108 8 3 194 118 322 2.29e-20 89.7
Msa1339970 MtrunA17_Chr8g0364191 29.123 285 156 14 5 264 118 381 3.53e-20 89.0
Msa1339970 MtrunA17_Chr3g0088881 30.682 264 157 10 6 264 138 380 3.65e-20 89.0
Msa1339970 MtrunA17_Chr3g0088871 29.348 276 147 11 2 264 138 378 4.17e-20 88.6
Msa1339970 MtrunA17_Chr1g0176211 29.861 288 150 15 3 264 115 376 4.43e-20 88.6
Msa1339970 MtrunA17_Chr5g0396471 29.965 287 143 11 4 263 150 405 4.55e-20 89.0
Msa1339970 MtrunA17_Chr6g0454491 29.927 274 166 11 4 264 128 388 4.77e-20 88.6
Msa1339970 MtrunA17_Chr4g0075791 30.180 222 117 9 1 198 86 293 6.22e-20 88.2
Msa1339970 MtrunA17_Chr8g0366331 28.464 267 151 11 3 236 119 378 6.77e-20 88.2
Msa1339970 MtrunA17_Chr3g0082441 30.403 273 163 10 4 264 122 379 6.82e-20 88.2
Msa1339970 MtrunA17_Chr5g0419921 30.216 278 149 11 6 264 100 351 7.81e-20 87.4
Msa1339970 MtrunA17_Chr6g0459941 30.698 215 120 7 3 194 116 324 1.23e-19 87.4
Msa1339970 MtrunA17_Chr7g0243531 30.909 220 125 8 3 199 95 310 1.33e-19 87.0
Msa1339970 MtrunA17_Chr6g0470191 32.857 210 113 8 2 195 124 321 1.37e-19 87.4
Msa1339970 MtrunA17_Chr3g0078181 29.710 276 161 14 6 264 133 392 1.98e-19 87.0
Msa1339970 MtrunA17_Chr4g0008881 27.063 303 161 12 3 265 108 390 2.08e-19 86.7
Msa1339970 MtrunA17_Chr1g0211571 29.811 265 169 8 4 264 109 360 2.51e-19 86.3
Msa1339970 MtrunA17_Chr2g0308131 29.665 209 125 7 3 201 106 302 2.70e-19 86.3
Msa1339970 MtrunA17_Chr2g0303121 30.233 215 113 10 3 191 119 322 3.30e-19 86.3
Msa1339970 MtrunA17_Chr6g0468711 31.022 274 160 9 5 264 145 403 3.51e-19 86.3
Msa1339970 MtrunA17_Chr2g0291141 26.592 267 154 11 1 233 102 360 4.26e-19 85.9
Msa1339970 MtrunA17_Chr1g0212281 29.520 271 168 11 4 264 143 400 4.45e-19 85.9
Msa1339970 MtrunA17_Chr7g0241051 29.323 266 151 10 3 235 105 366 4.60e-19 85.9
Msa1339970 MtrunA17_Chr4g0011441 29.054 296 161 12 3 265 137 416 5.76e-19 85.5
Msa1339970 MtrunA17_Chr4g0010581 27.599 279 172 10 3 263 96 362 6.10e-19 85.1
Msa1339970 MtrunA17_Chr4g0010541 27.675 271 164 10 1 263 100 346 6.20e-19 85.1
Msa1339970 MtrunA17_Chr7g0241021 28.205 273 147 11 3 235 116 379 6.57e-19 85.5
Msa1339970 MtrunA17_Chr3g0086471 30.686 277 153 13 3 264 121 373 8.41e-19 84.7
Msa1339970 MtrunA17_Chr3g0105221 30.837 227 116 11 3 201 119 332 1.12e-18 84.7
Msa1339970 MtrunA17_Chr3g0088901 29.779 272 164 11 3 264 118 372 1.35e-18 84.3
Msa1339970 MtrunA17_Chr7g0238771 27.885 208 125 7 2 192 138 337 1.37e-18 84.7
Msa1339970 MtrunA17_Chr6g0455961 30.804 224 113 9 3 191 115 331 1.38e-18 84.7
Msa1339970 MtrunA17_Chr4g0013661 31.963 219 106 11 3 191 116 321 1.44e-18 84.3
Msa1339970 MtrunA17_Chr7g0247401 28.881 277 150 13 2 236 121 392 1.54e-18 84.7
Msa1339970 MtrunA17_Chr3g0080281 29.699 266 153 11 6 264 122 360 1.64e-18 84.0
Msa1339970 MtrunA17_Chr4g0010591 27.239 268 163 10 4 263 32 275 2.19e-18 82.4
Msa1339970 MtrunA17_Chr3g0091301 31.102 254 121 13 3 223 136 368 2.21e-18 84.0
Msa1339970 MtrunA17_Chr3g0086431 31.461 267 147 14 6 264 130 368 2.55e-18 83.6
Msa1339970 MtrunA17_Chr3g0078171 28.214 280 155 13 4 264 145 397 2.94e-18 83.6
Msa1339970 MtrunA17_Chr1g0182401 26.255 259 157 8 1 237 87 333 6.65e-18 82.4
Msa1339970 MtrunA17_Chr7g0224791 27.852 298 158 13 2 263 102 378 8.08e-18 82.0
Msa1339970 MtrunA17_Chr7g0248561 29.060 234 124 8 3 199 120 348 9.33e-18 82.4
Msa1339970 MtrunA17_Chr6g0457181 30.769 221 123 9 3 199 103 317 1.63e-17 81.3
Msa1339970 MtrunA17_Chr7g0247961 30.769 221 118 10 2 194 137 350 1.67e-17 81.6
Msa1339970 MtrunA17_Chr4g0004041 30.088 226 115 9 3 191 120 339 1.79e-17 81.3
Msa1339970 MtrunA17_Chr3g0086441 31.273 275 144 12 7 264 138 384 2.16e-17 80.9
Msa1339970 MtrunA17_Chr1g0182421 25.792 221 139 6 1 202 87 301 2.17e-17 80.9
Msa1339970 MtrunA17_Chr3g0086511 30.037 273 152 12 6 264 139 386 2.18e-17 80.9
Msa1339970 MtrunA17_Chr5g0423291 29.289 239 117 8 3 194 111 344 3.93e-17 80.5
Msa1339970 MtrunA17_Chr3g0120931 27.000 300 174 13 1 264 104 394 4.00e-17 80.5
Msa1339970 MtrunA17_Chr7g0235411 30.332 211 110 9 3 194 119 311 4.42e-17 80.1
Msa1339970 MtrunA17_Chr1g0177191 32.018 228 127 10 3 215 125 339 5.31e-17 80.1
Msa1339970 MtrunA17_Chr3g0080891 31.466 232 131 12 2 221 168 383 5.32e-17 80.1
Msa1339970 MtrunA17_Chr5g0429621 28.413 271 142 12 1 236 99 352 5.42e-17 79.7
Msa1339970 MtrunA17_Chr2g0303131 27.830 212 121 8 3 192 114 315 6.11e-17 79.7
Msa1339970 MtrunA17_Chr4g0010611 29.703 202 123 7 3 197 103 292 6.51e-17 79.3
Msa1339970 MtrunA17_Chr7g0257581 29.515 227 125 11 3 201 130 349 7.60e-17 79.3
Msa1339970 MtrunA17_Chr6g0470791 29.956 227 116 10 3 194 116 334 7.77e-17 79.7
Msa1339970 MtrunA17_Chr2g0287091 32.468 231 125 12 51 264 3 219 7.97e-17 77.0
Msa1339970 MtrunA17_Chr3g0080501 32.407 216 101 11 4 195 150 344 8.97e-17 79.3
Msa1339970 MtrunA17_Chr7g0241641 27.232 224 124 10 1 199 118 327 9.00e-17 79.7
Msa1339970 MtrunA17_Chr3g0091431 30.739 257 121 13 3 223 136 371 9.45e-17 79.3
Msa1339970 MtrunA17_Chr1g0176571 30.961 281 163 13 4 264 19 288 1.19e-16 77.8
Msa1339970 MtrunA17_Chr1g0210611 27.805 205 112 7 3 200 76 251 1.53e-16 77.8
Msa1339970 MtrunA17_Chr4g0013771 27.957 279 147 13 3 238 137 404 1.56e-16 78.6
Msa1339970 MtrunA17_Chr5g0419901 30.000 190 105 7 6 191 3 168 1.60e-16 75.5
Msa1339970 MtrunA17_Chr3g0119511 28.696 230 116 8 3 194 115 334 1.80e-16 78.6
Msa1339970 MtrunA17_Chr7g0241031 30.672 238 101 12 3 199 25 239 1.87e-16 77.4
Msa1339970 MtrunA17_Chr6g0468701 28.159 277 175 10 5 264 140 409 1.91e-16 78.6
Msa1339970 MtrunA17_Chr7g0248611 29.956 227 118 10 3 199 158 373 2.33e-16 78.2
Msa1339970 MtrunA17_Chr7g0248001 28.959 221 132 6 3 199 142 361 2.39e-16 78.2
Msa1339970 MtrunA17_Chr4g0015211 27.946 297 165 12 1 262 121 403 2.50e-16 78.2
Msa1339970 MtrunA17_Chr4g0013691 29.268 205 110 8 5 184 112 306 2.82e-16 77.4
Msa1339970 MtrunA17_Chr7g0234991 30.180 222 113 12 52 238 15 229 2.93e-16 76.3
Msa1339970 MtrunA17_Chr2g0289011 28.070 228 131 10 5 208 93 311 3.03e-16 77.4
Msa1339970 MtrunA17_Chr5g0418291 28.372 215 130 9 3 194 166 379 3.13e-16 77.8
Msa1339970 MtrunA17_Chr3g0101941 36.196 163 78 9 3 151 141 291 3.94e-16 76.6
Msa1339970 MtrunA17_Chr2g0291151 28.085 235 128 10 1 202 103 329 4.44e-16 77.4
Msa1339970 MtrunA17_Chr4g0009891 26.740 273 165 13 1 263 100 347 4.46e-16 77.0
Msa1339970 MtrunA17_Chr3g0134731 28.571 217 140 6 1 208 111 321 5.00e-16 77.0
Msa1339970 MtrunA17_Chr5g0429561 27.835 291 160 12 3 263 99 369 6.81e-16 76.6
Msa1339970 MtrunA17_Chr1g0184891 29.389 262 148 12 3 236 109 361 7.20e-16 76.6
Msa1339970 MtrunA17_Chr4g0075281 32.609 230 126 11 53 264 41 259 7.21e-16 75.1
Msa1339970 MtrunA17_Chr7g0235401 29.493 217 115 8 3 194 102 305 7.70e-16 76.6
Msa1339970 MtrunA17_Chr2g0284671 26.087 253 151 9 3 236 94 329 9.78e-16 75.9
Msa1339970 MtrunA17_Chr1g0201181 50.000 88 39 4 179 265 1 84 9.80e-16 73.6
Msa1339970 MtrunA17_Chr5g0428441 27.826 230 114 9 3 199 110 320 1.02e-15 76.3
Msa1339970 MtrunA17_Chr3g0078401 31.858 226 123 10 51 266 3 207 1.42e-15 73.6
Msa1339970 MtrunA17_Chr2g0289971 25.571 219 134 8 1 194 1 215 1.43e-15 75.1
Msa1339970 MtrunA17_Chr7g0238801 27.273 264 162 8 1 238 115 374 1.50e-15 75.9
Msa1339970 MtrunA17_Chr3g0080491 32.258 217 89 11 4 198 131 311 1.51e-15 75.5
Msa1339970 MtrunA17_Chr7g0236711 28.251 223 121 10 1 199 109 316 1.70e-15 75.5
Msa1339970 MtrunA17_Chr1g0212141 29.851 268 164 12 5 264 137 388 1.75e-15 75.5
Msa1339970 MtrunA17_Chr4g0010561 27.240 279 173 10 3 263 138 404 1.79e-15 75.5
Msa1339970 MtrunA17_Chr4g0072991 26.667 225 121 9 3 194 127 340 2.37e-15 75.1
Msa1339970 MtrunA17_Chr7g0238531 27.869 305 151 15 2 265 119 395 2.66e-15 75.1
Msa1339970 MtrunA17_Chr6g0486691 29.075 227 119 9 3 194 174 393 3.42e-15 75.1
Msa1339970 MtrunA17_Chr1g0195191 29.204 226 119 11 3 194 107 325 3.71e-15 74.7
Msa1339970 MtrunA17_Chr5g0423731 30.455 220 133 10 50 264 2 206 4.34e-15 72.0
Msa1339970 MtrunA17_Chr5g0409701 26.768 198 130 5 2 191 151 341 5.01e-15 74.3
Msa1339970 MtrunA17_Chr7g0236761 27.149 221 133 9 3 199 122 338 5.17e-15 74.3
Msa1339970 MtrunA17_Chr4g0010631 28.643 199 129 6 3 197 103 292 5.18e-15 73.9
Msa1339970 MtrunA17_Chr3g0078201 34.337 166 83 6 108 264 3 151 7.04e-15 70.1
Msa1339970 MtrunA17_Chr5g0409661 26.904 197 129 5 3 191 152 341 8.09e-15 73.9
Msa1339970 MtrunA17_Chr1g0176581 30.496 282 144 17 3 264 213 462 9.66e-15 73.6
Msa1339970 MtrunA17_Chr7g0234411 26.236 263 128 12 3 209 124 376 1.02e-14 73.6
Msa1339970 MtrunA17_Chr2g0293241 25.806 248 167 8 1 233 88 333 1.11e-14 73.2
Msa1339970 MtrunA17_Chr5g0402341 32.927 164 98 5 75 236 34 187 1.35e-14 70.5
Msa1339970 MtrunA17_Chr7g0248601 26.378 254 114 8 10 236 62 269 1.51e-14 72.0
Msa1339970 MtrunA17_Chr4g0010621 29.208 202 123 7 3 197 103 291 2.06e-14 72.0
Msa1339970 MtrunA17_Chr7g0238611 25.753 299 163 12 3 263 128 405 2.18e-14 72.4
Msa1339970 MtrunA17_Chr4g0004791 28.125 224 122 9 3 194 121 337 2.41e-14 72.4
Msa1339970 MtrunA17_Chr4g0001001 27.830 212 122 9 3 191 598 801 2.92e-14 72.4
Msa1339970 MtrunA17_Chr3g0101931 29.927 274 140 12 3 264 139 372 3.20e-14 71.6
Msa1339970 MtrunA17_Chr3g0079601 31.343 201 112 8 73 264 12 195 3.59e-14 69.3
Msa1339970 MtrunA17_Chr3g0130181 35.099 151 71 6 4 150 54 181 4.19e-14 69.3
Msa1339970 MtrunA17_Chr7g0235791 28.638 213 103 8 3 194 116 300 7.34e-14 70.1
Msa1339970 MtrunA17_Chr7g0233491 28.767 219 106 10 3 194 121 316 7.99e-14 70.5
Msa1339970 MtrunA17_Chr6g0449051 28.094 299 167 13 3 264 129 416 1.02e-13 70.5
Msa1339970 MtrunA17_Chr7g0238601 25.806 248 141 9 3 221 111 344 1.02e-13 70.5
Msa1339970 MtrunA17_Chr4g0066041 27.839 273 169 10 3 263 103 359 1.04e-13 70.1
Msa1339970 MtrunA17_Chr6g0476271 26.316 266 175 9 6 263 113 365 1.09e-13 70.1
Msa1339970 MtrunA17_Chr1g0169061 29.630 216 111 9 8 194 153 356 1.11e-13 70.5
Msa1339970 MtrunA17_Chr4g0066011 28.934 197 132 6 3 194 108 301 1.28e-13 70.1
Msa1339970 MtrunA17_Chr1g0172991 27.854 219 105 9 3 192 163 357 1.33e-13 70.1
Msa1339970 MtrunA17_Chr2g0293281 26.275 255 163 9 1 237 87 334 1.44e-13 70.1
Msa1339970 MtrunA17_Chr2g0293311 27.530 247 160 9 3 233 94 337 1.50e-13 69.7
Msa1339970 MtrunA17_Chr7g0228821 25.490 255 164 9 3 236 121 370 1.76e-13 69.7
Msa1339970 MtrunA17_Chr2g0290021 27.570 214 128 8 1 191 101 310 2.08e-13 69.3
Msa1339970 MtrunA17_Chr4g0065061 26.866 201 132 8 5 199 121 312 2.41e-13 69.3
Msa1339970 MtrunA17_Chr2g0303291 29.208 202 113 8 3 192 112 295 2.67e-13 68.9
Msa1339970 MtrunA17_Chr1g0176661 26.148 283 169 13 1 263 105 367 2.73e-13 68.9
Msa1339970 MtrunA17_Chr4g0004781 27.679 224 123 8 3 194 121 337 3.86e-13 68.6
Msa1339970 MtrunA17_Chr5g0447131 28.571 210 122 7 3 191 119 321 4.71e-13 68.6
Msa1339970 MtrunA17_Chr2g0290061 26.103 272 152 12 1 233 90 351 4.96e-13 68.2
Msa1339970 MtrunA17_Chr2g0289991 24.242 231 149 7 1 208 96 323 5.47e-13 68.2
Msa1339970 MtrunA17_Chr7g0248641 29.060 234 124 10 3 199 125 353 5.54e-13 68.2
Msa1339970 MtrunA17_Chr7g0222501 30.837 227 114 9 3 191 122 343 6.53e-13 68.2
Msa1339970 MtrunA17_Chr6g0488481 28.070 228 114 12 3 195 107 319 7.08e-13 68.2
Msa1339970 MtrunA17_Chr7g0238591 27.556 225 123 8 3 201 108 318 7.22e-13 67.8
Msa1339970 MtrunA17_Chr6g0481501 27.016 248 146 9 5 228 121 357 9.99e-13 67.4
Msa1339970 MtrunA17_Chr7g0248571 29.375 160 96 4 3 150 120 274 1.24e-12 66.2
Msa1339970 MtrunA17_Chr7g0236781 28.505 214 121 10 4 192 123 329 1.73e-12 66.6
Msa1339970 MtrunA17_Chr5g0424381 27.372 274 149 14 19 262 167 420 2.36e-12 66.2
Msa1339970 MtrunA17_Chr2g0277521 28.713 202 111 8 47 236 44 224 2.51e-12 65.1
Msa1339970 MtrunA17_Chr7g0243001 26.906 223 120 10 5 194 123 335 2.97e-12 65.9
Msa1339970 MtrunA17_Chr1g0169751 28.378 222 106 7 3 187 110 315 3.00e-12 65.9
Msa1339970 MtrunA17_Chr4g0035241 26.147 218 128 9 1 189 97 310 3.46e-12 65.9
Msa1339970 MtrunA17_Chr8g0388151 27.826 230 127 9 1 201 89 308 3.54e-12 65.9
Msa1339970 MtrunA17_Chr3g0091251 27.434 226 130 9 51 264 20 223 5.29e-12 63.9
Msa1339970 MtrunA17_Chr5g0447601 25.200 250 153 9 5 233 133 369 5.30e-12 65.5
Msa1339970 MtrunA17_Chr7g0235671 33.544 158 74 9 108 236 6 161 5.70e-12 63.9
Msa1339970 MtrunA17_Chr4g0013651 26.639 244 126 9 3 223 130 343 6.05e-12 65.1
Msa1339970 MtrunA17_Chr2g0303281 28.378 222 115 13 4 192 104 314 6.34e-12 65.1
Msa1339970 MtrunA17_Chr3g0090301 27.602 221 122 10 1 197 102 308 8.07e-12 64.7
Msa1339970 MtrunA17_Chr2g0290081 26.697 221 126 11 1 194 86 297 9.68e-12 64.3
Msa1339970 MtrunA17_Chr5g0447471 28.856 201 127 7 3 195 102 294 1.49e-11 63.9
Msa1339970 MtrunA17_Chr5g0429701 24.074 270 181 9 5 263 121 377 1.74e-11 63.5
Msa1339970 MtrunA17_Chr6g0477491 22.305 269 161 10 4 236 120 376 1.89e-11 63.5
Msa1339970 MtrunA17_Chr4g0066421 27.638 199 119 8 21 206 34 220 1.96e-11 62.8
Msa1339970 MtrunA17_Chr7g0247931 27.485 171 104 5 47 199 41 209 2.57e-11 62.8
Msa1339970 MtrunA17_Chr3g0086941 31.053 190 114 7 80 264 17 194 2.77e-11 61.2
Msa1339970 MtrunA17_Chr8g0389891 25.652 230 144 9 48 263 1 217 2.78e-11 61.6
Msa1339970 MtrunA17_Chr7g0248931 31.056 161 95 8 3 148 80 239 3.01e-11 62.4
Msa1339970 MtrunA17_Chr4g0013671 30.120 166 83 8 3 148 97 249 3.11e-11 62.0
Msa1339970 MtrunA17_Chr4g0066071 25.461 271 178 8 3 263 103 359 4.00e-11 62.4
Msa1339970 MtrunA17_Chr3g0090291 27.273 220 130 10 1 200 102 311 5.99e-11 62.0
Msa1339970 MtrunA17_Chr2g0291131 24.766 214 131 9 1 190 86 293 6.75e-11 62.0
Msa1339970 MtrunA17_Chr5g0447281 24.373 279 168 12 5 262 131 387 7.27e-11 62.0
Msa1339970 MtrunA17_Chr4g0012741 25.660 265 150 14 5 236 119 369 7.52e-11 62.0
Msa1339970 MtrunA17_Chr2g0293291 27.215 158 98 7 1 147 87 238 9.30e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1339970 AT3G23880.1 29.963 267 167 11 3 265 112 362 1.55e-21 92.8
Msa1339970 AT3G06240.1 27.861 201 131 7 1 193 163 357 4.49e-16 77.8
Msa1339970 AT4G21240.1 28.415 183 109 5 6 176 131 303 1.73e-14 73.2
Msa1339970 AT4G12560.1 23.744 219 142 7 3 198 91 307 5.05e-12 65.9
Msa1339970 AT4G12560.2 23.744 219 142 7 3 198 91 307 5.05e-12 65.9
Msa1339970 AT4G12560.3 23.744 219 142 7 3 198 91 307 5.05e-12 65.9

Find 61 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTATTGTACTACAATTTC+TGG 0.178247 tig0003589:+70611 Msa1339970:CDS
TGTGCAAAATTGCTATAATT+TGG 0.211765 tig0003589:+70088 Msa1339970:CDS
TTGTGAGCGGCAATTTAAAT+TGG 0.243238 tig0003589:+70219 Msa1339970:CDS
TTCCCCAAAGGTATAAATTA+AGG 0.248612 tig0003589:-70123 None:intergenic
AGACCTTAATTTATACCTTT+GGG 0.295333 tig0003589:+70120 Msa1339970:CDS
CGGTGTGATCCTGGTCGGTT+AGG 0.308858 tig0003589:+70185 Msa1339970:CDS
AAGACCTTAATTTATACCTT+TGG 0.321657 tig0003589:+70119 Msa1339970:CDS
TTGGATTTCAATTTGATAGA+AGG 0.327875 tig0003589:-69960 None:intergenic
ATCATTCTAACAAAACTCAT+TGG 0.343739 tig0003589:+70390 Msa1339970:CDS
AAAACTATCAAAAGCAATAA+TGG 0.352454 tig0003589:-69994 None:intergenic
GCCTTGTTCATTTCAGAATA+CGG 0.376442 tig0003589:+70518 Msa1339970:CDS
AATAATGGTTGGAGATGGTT+TGG 0.394416 tig0003589:-69979 None:intergenic
ATTTCTCTAAATTTACTTTG+TGG 0.401816 tig0003589:+69934 Msa1339970:CDS
AAGGCATCAGATAAACAATA+AGG 0.413031 tig0003589:-70500 None:intergenic
GTGTGGATGATGAAAGAGTA+TGG 0.424064 tig0003589:+70416 Msa1339970:CDS
CATAGCCAAAGCCACGATAT+AGG 0.432965 tig0003589:-70031 None:intergenic
GACGCTGAGTTTAGAATGCT+GGG 0.446672 tig0003589:-70558 None:intergenic
AGACGCTGAGTTTAGAATGC+TGG 0.452138 tig0003589:-70559 None:intergenic
TCATTCTAACAAAACTCATT+GGG 0.456268 tig0003589:+70391 Msa1339970:CDS
ACCACATCAATGACAATCAT+AGG 0.457087 tig0003589:+69882 None:intergenic
TGTGATCCGCGGTGTGATCC+TGG 0.460891 tig0003589:+70176 Msa1339970:CDS
GGTGTGATCCTGGTCGGTTA+GGG 0.463251 tig0003589:+70186 Msa1339970:CDS
AGGTTCCTATATCGTGGCTT+TGG 0.476733 tig0003589:+70026 Msa1339970:CDS
ATCCTGGTCGGTTAGGGGTA+GGG 0.484380 tig0003589:+70192 Msa1339970:CDS
GATCCTGGTCGGTTAGGGGT+AGG 0.487768 tig0003589:+70191 Msa1339970:CDS
CAATCATAGGTTCATGCAAT+GGG 0.490077 tig0003589:+69895 Msa1339970:CDS
ACATATTTACAACGAGAGTC+TGG 0.494959 tig0003589:+70652 Msa1339970:CDS
GATATTGAGAAGGAAACGTA+TGG 0.497432 tig0003589:+70287 Msa1339970:CDS
GATCAAAAGATACGTAAATA+CGG 0.500866 tig0003589:-70370 None:intergenic
GACCTTAATTTATACCTTTG+GGG 0.512190 tig0003589:+70121 Msa1339970:CDS
TATAACTTAAATAATAATGA+TGG 0.519682 tig0003589:+70581 Msa1339970:CDS
GGATCACACCGCGGATCACA+TGG 0.525421 tig0003589:-70173 None:intergenic
CGTTTCCTTCTCAATATCAA+AGG 0.530437 tig0003589:-70282 None:intergenic
TTCCCTACCCCTAACCGACC+AGG 0.539323 tig0003589:-70194 None:intergenic
AGTATGGAGTTGTTGAGTCA+TGG 0.550884 tig0003589:+70432 Msa1339970:CDS
CTATCAAAAGCAATAATGGT+TGG 0.554081 tig0003589:-69990 None:intergenic
CAGGATAAGTTAACATCACC+TGG 0.561698 tig0003589:+70476 Msa1339970:CDS
AAAGCAATAATGGTTGGAGA+TGG 0.566244 tig0003589:-69984 None:intergenic
GCTATGATCAAGTTAACGAC+AGG 0.568855 tig0003589:+70048 Msa1339970:CDS
AGTTTCCTTTGATATTGAGA+AGG 0.571095 tig0003589:+70277 Msa1339970:CDS
ACAATCATAGGTTCATGCAA+TGG 0.578804 tig0003589:+69894 Msa1339970:CDS
ATATTGAGAAGGAAACGTAT+GGG 0.579913 tig0003589:+70288 Msa1339970:CDS
ACAAAACTCATTGGGTTGTG+TGG 0.583497 tig0003589:+70399 Msa1339970:CDS
TCAAGTTAACGACAGGTACA+AGG 0.599173 tig0003589:+70055 Msa1339970:CDS
TTCTTGTCACGATAATCTTG+AGG 0.615593 tig0003589:-70323 None:intergenic
AACAAGAGGTTCCTATATCG+TGG 0.617572 tig0003589:+70020 Msa1339970:CDS
GGTGATGTTAACTTATCCTG+TGG 0.621388 tig0003589:-70473 None:intergenic
AACTTAAATAATAATGATGG+TGG 0.622729 tig0003589:+70584 Msa1339970:CDS
TCAGATAAACAATAAGGACC+AGG 0.640865 tig0003589:-70494 None:intergenic
GTGTGATCCTGGTCGGTTAG+GGG 0.642756 tig0003589:+70187 Msa1339970:CDS
ATCCGCGGTGTGATCCTGGT+CGG 0.646030 tig0003589:+70180 Msa1339970:CDS
TATTGAGAAGGAAACGTATG+GGG 0.653640 tig0003589:+70289 Msa1339970:CDS
AAAACTTCCCATGTGATCCG+CGG 0.655403 tig0003589:+70165 Msa1339970:CDS
TAAACTGATGATCATCCCAC+AGG 0.656896 tig0003589:+70457 Msa1339970:CDS
TCCGTATTCTGAAATGAACA+AGG 0.659512 tig0003589:-70519 None:intergenic
GTGATGTTAACTTATCCTGT+GGG 0.672212 tig0003589:-70472 None:intergenic
GATCACACCGCGGATCACAT+GGG 0.689223 tig0003589:-70172 None:intergenic
AGAGTCTGGTATCACCACAC+TGG 0.689324 tig0003589:+70666 Msa1339970:CDS
GGGGTAGGGAAATTTGTGAG+CGG 0.697024 tig0003589:+70206 Msa1339970:CDS
ACGCTGAGTTTAGAATGCTG+GGG 0.710023 tig0003589:-70557 None:intergenic
ATATATATGAATTACCAGTG+TGG 0.767539 tig0003589:-70680 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAACTTAAATAATAATGA+TGG + tig0003589:70581-70600 Msa1339970:CDS 10.0%
!! TATAACTTAAATAATAATGA+TGG + tig0003589:70581-70600 Msa1339970:CDS 10.0%
!! ATTTCTCTAAATTTACTTTG+TGG + tig0003589:69934-69953 Msa1339970:CDS 20.0%
!! AAAACTATCAAAAGCAATAA+TGG - tig0003589:69997-70016 None:intergenic 20.0%
!! TAAAAATGCCTTTAGTAAAA+AGG + tig0003589:70250-70269 Msa1339970:CDS 20.0%
!! AACTTAAATAATAATGATGG+TGG + tig0003589:70584-70603 Msa1339970:CDS 20.0%
!! ATTTCTCTAAATTTACTTTG+TGG + tig0003589:69934-69953 Msa1339970:CDS 20.0%
!! AAAACTATCAAAAGCAATAA+TGG - tig0003589:69997-70016 None:intergenic 20.0%
!! TAAAAATGCCTTTAGTAAAA+AGG + tig0003589:70250-70269 Msa1339970:CDS 20.0%
!! AACTTAAATAATAATGATGG+TGG + tig0003589:70584-70603 Msa1339970:CDS 20.0%
! TTGGATTTCAATTTGATAGA+AGG - tig0003589:69963-69982 None:intergenic 25.0%
!!! TTGATAGTTTTGATAACAAG+AGG + tig0003589:70006-70025 Msa1339970:CDS 25.0%
! TGTGCAAAATTGCTATAATT+TGG + tig0003589:70088-70107 Msa1339970:CDS 25.0%
! AAGACCTTAATTTATACCTT+TGG + tig0003589:70119-70138 Msa1339970:CDS 25.0%
! AGACCTTAATTTATACCTTT+GGG + tig0003589:70120-70139 Msa1339970:CDS 25.0%
!! AACTATCACCTTTTTACTAA+AGG - tig0003589:70261-70280 None:intergenic 25.0%
! GATCAAAAGATACGTAAATA+CGG - tig0003589:70373-70392 None:intergenic 25.0%
! ATCATTCTAACAAAACTCAT+TGG + tig0003589:70390-70409 Msa1339970:CDS 25.0%
! TCATTCTAACAAAACTCATT+GGG + tig0003589:70391-70410 Msa1339970:CDS 25.0%
! GATTATTGTACTACAATTTC+TGG + tig0003589:70611-70630 Msa1339970:CDS 25.0%
! TTGGATTTCAATTTGATAGA+AGG - tig0003589:69963-69982 None:intergenic 25.0%
!!! TTGATAGTTTTGATAACAAG+AGG + tig0003589:70006-70025 Msa1339970:CDS 25.0%
! TGTGCAAAATTGCTATAATT+TGG + tig0003589:70088-70107 Msa1339970:CDS 25.0%
! AAGACCTTAATTTATACCTT+TGG + tig0003589:70119-70138 Msa1339970:CDS 25.0%
! AGACCTTAATTTATACCTTT+GGG + tig0003589:70120-70139 Msa1339970:CDS 25.0%
!! AACTATCACCTTTTTACTAA+AGG - tig0003589:70261-70280 None:intergenic 25.0%
! GATCAAAAGATACGTAAATA+CGG - tig0003589:70373-70392 None:intergenic 25.0%
! ATCATTCTAACAAAACTCAT+TGG + tig0003589:70390-70409 Msa1339970:CDS 25.0%
! TCATTCTAACAAAACTCATT+GGG + tig0003589:70391-70410 Msa1339970:CDS 25.0%
! GATTATTGTACTACAATTTC+TGG + tig0003589:70611-70630 Msa1339970:CDS 25.0%
CTATCAAAAGCAATAATGGT+TGG - tig0003589:69993-70012 None:intergenic 30.0%
GACCTTAATTTATACCTTTG+GGG + tig0003589:70121-70140 Msa1339970:CDS 30.0%
! TTCCCCAAAGGTATAAATTA+AGG - tig0003589:70126-70145 None:intergenic 30.0%
AGTTTCCTTTGATATTGAGA+AGG + tig0003589:70277-70296 Msa1339970:CDS 30.0%
ATATTGAGAAGGAAACGTAT+GGG + tig0003589:70288-70307 Msa1339970:CDS 30.0%
! AAGGCATCAGATAAACAATA+AGG - tig0003589:70503-70522 None:intergenic 30.0%
CTATCAAAAGCAATAATGGT+TGG - tig0003589:69993-70012 None:intergenic 30.0%
GACCTTAATTTATACCTTTG+GGG + tig0003589:70121-70140 Msa1339970:CDS 30.0%
! TTCCCCAAAGGTATAAATTA+AGG - tig0003589:70126-70145 None:intergenic 30.0%
AGTTTCCTTTGATATTGAGA+AGG + tig0003589:70277-70296 Msa1339970:CDS 30.0%
ATATTGAGAAGGAAACGTAT+GGG + tig0003589:70288-70307 Msa1339970:CDS 30.0%
! AAGGCATCAGATAAACAATA+AGG - tig0003589:70503-70522 None:intergenic 30.0%
ACAATCATAGGTTCATGCAA+TGG + tig0003589:69894-69913 Msa1339970:CDS 35.0%
CAATCATAGGTTCATGCAAT+GGG + tig0003589:69895-69914 Msa1339970:CDS 35.0%
AATAATGGTTGGAGATGGTT+TGG - tig0003589:69982-70001 None:intergenic 35.0%
AAAGCAATAATGGTTGGAGA+TGG - tig0003589:69987-70006 None:intergenic 35.0%
! ATACCTTTGGGGAAAAAGAT+TGG + tig0003589:70132-70151 Msa1339970:CDS 35.0%
TTGTGAGCGGCAATTTAAAT+TGG + tig0003589:70219-70238 Msa1339970:CDS 35.0%
CGTTTCCTTCTCAATATCAA+AGG - tig0003589:70285-70304 None:intergenic 35.0%
GATATTGAGAAGGAAACGTA+TGG + tig0003589:70287-70306 Msa1339970:CDS 35.0%
TATTGAGAAGGAAACGTATG+GGG + tig0003589:70289-70308 Msa1339970:CDS 35.0%
TTCTTGTCACGATAATCTTG+AGG - tig0003589:70326-70345 None:intergenic 35.0%
GTGATGTTAACTTATCCTGT+GGG - tig0003589:70475-70494 None:intergenic 35.0%
TCAGATAAACAATAAGGACC+AGG - tig0003589:70497-70516 None:intergenic 35.0%
! GCCTTGTTCATTTCAGAATA+CGG + tig0003589:70518-70537 Msa1339970:CDS 35.0%
!! TCCGTATTCTGAAATGAACA+AGG - tig0003589:70522-70541 None:intergenic 35.0%
ACATATTTACAACGAGAGTC+TGG + tig0003589:70652-70671 Msa1339970:CDS 35.0%
ACAATCATAGGTTCATGCAA+TGG + tig0003589:69894-69913 Msa1339970:CDS 35.0%
CAATCATAGGTTCATGCAAT+GGG + tig0003589:69895-69914 Msa1339970:CDS 35.0%
AATAATGGTTGGAGATGGTT+TGG - tig0003589:69982-70001 None:intergenic 35.0%
AAAGCAATAATGGTTGGAGA+TGG - tig0003589:69987-70006 None:intergenic 35.0%
! ATACCTTTGGGGAAAAAGAT+TGG + tig0003589:70132-70151 Msa1339970:CDS 35.0%
TTGTGAGCGGCAATTTAAAT+TGG + tig0003589:70219-70238 Msa1339970:CDS 35.0%
CGTTTCCTTCTCAATATCAA+AGG - tig0003589:70285-70304 None:intergenic 35.0%
GATATTGAGAAGGAAACGTA+TGG + tig0003589:70287-70306 Msa1339970:CDS 35.0%
TATTGAGAAGGAAACGTATG+GGG + tig0003589:70289-70308 Msa1339970:CDS 35.0%
TTCTTGTCACGATAATCTTG+AGG - tig0003589:70326-70345 None:intergenic 35.0%
GTGATGTTAACTTATCCTGT+GGG - tig0003589:70475-70494 None:intergenic 35.0%
TCAGATAAACAATAAGGACC+AGG - tig0003589:70497-70516 None:intergenic 35.0%
! GCCTTGTTCATTTCAGAATA+CGG + tig0003589:70518-70537 Msa1339970:CDS 35.0%
!! TCCGTATTCTGAAATGAACA+AGG - tig0003589:70522-70541 None:intergenic 35.0%
ACATATTTACAACGAGAGTC+TGG + tig0003589:70652-70671 Msa1339970:CDS 35.0%
AACAAGAGGTTCCTATATCG+TGG + tig0003589:70020-70039 Msa1339970:CDS 40.0%
GCTATGATCAAGTTAACGAC+AGG + tig0003589:70048-70067 Msa1339970:CDS 40.0%
TCAAGTTAACGACAGGTACA+AGG + tig0003589:70055-70074 Msa1339970:CDS 40.0%
! AGCAATTTTGCACAACTGCT+AGG - tig0003589:70082-70101 None:intergenic 40.0%
! TGTCCAATCTTTTTCCCCAA+AGG - tig0003589:70138-70157 None:intergenic 40.0%
! ACAAAACTCATTGGGTTGTG+TGG + tig0003589:70399-70418 Msa1339970:CDS 40.0%
GTGTGGATGATGAAAGAGTA+TGG + tig0003589:70416-70435 Msa1339970:CDS 40.0%
AGTATGGAGTTGTTGAGTCA+TGG + tig0003589:70432-70451 Msa1339970:CDS 40.0%
TAAACTGATGATCATCCCAC+AGG + tig0003589:70457-70476 Msa1339970:CDS 40.0%
GGTGATGTTAACTTATCCTG+TGG - tig0003589:70476-70495 None:intergenic 40.0%
CAGGATAAGTTAACATCACC+TGG + tig0003589:70476-70495 Msa1339970:CDS 40.0%
AACAAGAGGTTCCTATATCG+TGG + tig0003589:70020-70039 Msa1339970:CDS 40.0%
GCTATGATCAAGTTAACGAC+AGG + tig0003589:70048-70067 Msa1339970:CDS 40.0%
TCAAGTTAACGACAGGTACA+AGG + tig0003589:70055-70074 Msa1339970:CDS 40.0%
! AGCAATTTTGCACAACTGCT+AGG - tig0003589:70082-70101 None:intergenic 40.0%
! TGTCCAATCTTTTTCCCCAA+AGG - tig0003589:70138-70157 None:intergenic 40.0%
! ACAAAACTCATTGGGTTGTG+TGG + tig0003589:70399-70418 Msa1339970:CDS 40.0%
GTGTGGATGATGAAAGAGTA+TGG + tig0003589:70416-70435 Msa1339970:CDS 40.0%
AGTATGGAGTTGTTGAGTCA+TGG + tig0003589:70432-70451 Msa1339970:CDS 40.0%
TAAACTGATGATCATCCCAC+AGG + tig0003589:70457-70476 Msa1339970:CDS 40.0%
GGTGATGTTAACTTATCCTG+TGG - tig0003589:70476-70495 None:intergenic 40.0%
CAGGATAAGTTAACATCACC+TGG + tig0003589:70476-70495 Msa1339970:CDS 40.0%
AGGTTCCTATATCGTGGCTT+TGG + tig0003589:70026-70045 Msa1339970:CDS 45.0%
CATAGCCAAAGCCACGATAT+AGG - tig0003589:70034-70053 None:intergenic 45.0%
AAAACTTCCCATGTGATCCG+CGG + tig0003589:70165-70184 Msa1339970:CDS 45.0%
! ACGCTGAGTTTAGAATGCTG+GGG - tig0003589:70560-70579 None:intergenic 45.0%
! GACGCTGAGTTTAGAATGCT+GGG - tig0003589:70561-70580 None:intergenic 45.0%
! AGACGCTGAGTTTAGAATGC+TGG - tig0003589:70562-70581 None:intergenic 45.0%
AGGTTCCTATATCGTGGCTT+TGG + tig0003589:70026-70045 Msa1339970:CDS 45.0%
CATAGCCAAAGCCACGATAT+AGG - tig0003589:70034-70053 None:intergenic 45.0%
AAAACTTCCCATGTGATCCG+CGG + tig0003589:70165-70184 Msa1339970:CDS 45.0%
! ACGCTGAGTTTAGAATGCTG+GGG - tig0003589:70560-70579 None:intergenic 45.0%
! GACGCTGAGTTTAGAATGCT+GGG - tig0003589:70561-70580 None:intergenic 45.0%
! AGACGCTGAGTTTAGAATGC+TGG - tig0003589:70562-70581 None:intergenic 45.0%
GGGGTAGGGAAATTTGTGAG+CGG + tig0003589:70206-70225 Msa1339970:CDS 50.0%
AGAGTCTGGTATCACCACAC+TGG + tig0003589:70666-70685 Msa1339970:CDS 50.0%
GGGGTAGGGAAATTTGTGAG+CGG + tig0003589:70206-70225 Msa1339970:CDS 50.0%
AGAGTCTGGTATCACCACAC+TGG + tig0003589:70666-70685 Msa1339970:CDS 50.0%
GATCACACCGCGGATCACAT+GGG - tig0003589:70175-70194 None:intergenic 55.0%
GGTGTGATCCTGGTCGGTTA+GGG + tig0003589:70186-70205 Msa1339970:CDS 55.0%
GTGTGATCCTGGTCGGTTAG+GGG + tig0003589:70187-70206 Msa1339970:CDS 55.0%
ATCCTGGTCGGTTAGGGGTA+GGG + tig0003589:70192-70211 Msa1339970:CDS 55.0%
GATCACACCGCGGATCACAT+GGG - tig0003589:70175-70194 None:intergenic 55.0%
GGTGTGATCCTGGTCGGTTA+GGG + tig0003589:70186-70205 Msa1339970:CDS 55.0%
GTGTGATCCTGGTCGGTTAG+GGG + tig0003589:70187-70206 Msa1339970:CDS 55.0%
ATCCTGGTCGGTTAGGGGTA+GGG + tig0003589:70192-70211 Msa1339970:CDS 55.0%
GGATCACACCGCGGATCACA+TGG - tig0003589:70176-70195 None:intergenic 60.0%
TGTGATCCGCGGTGTGATCC+TGG + tig0003589:70176-70195 Msa1339970:CDS 60.0%
ATCCGCGGTGTGATCCTGGT+CGG + tig0003589:70180-70199 Msa1339970:CDS 60.0%
AACCGACCAGGATCACACCG+CGG - tig0003589:70185-70204 None:intergenic 60.0%
CGGTGTGATCCTGGTCGGTT+AGG + tig0003589:70185-70204 Msa1339970:CDS 60.0%
GATCCTGGTCGGTTAGGGGT+AGG + tig0003589:70191-70210 Msa1339970:CDS 60.0%
TTCCCTACCCCTAACCGACC+AGG - tig0003589:70197-70216 None:intergenic 60.0%
GGATCACACCGCGGATCACA+TGG - tig0003589:70176-70195 None:intergenic 60.0%
TGTGATCCGCGGTGTGATCC+TGG + tig0003589:70176-70195 Msa1339970:CDS 60.0%
ATCCGCGGTGTGATCCTGGT+CGG + tig0003589:70180-70199 Msa1339970:CDS 60.0%
AACCGACCAGGATCACACCG+CGG - tig0003589:70185-70204 None:intergenic 60.0%
CGGTGTGATCCTGGTCGGTT+AGG + tig0003589:70185-70204 Msa1339970:CDS 60.0%
GATCCTGGTCGGTTAGGGGT+AGG + tig0003589:70191-70210 Msa1339970:CDS 60.0%
TTCCCTACCCCTAACCGACC+AGG - tig0003589:70197-70216 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0003589 gene 69891 70691 69891 ID=Msa1339970;Name=Msa1339970
tig0003589 mRNA 69891 70691 69891 ID=Msa1339970-mRNA-1;Parent=Msa1339970;Name=Msa1339970-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|1|1|0|266
tig0003589 exon 69891 70691 69891 ID=Msa1339970-mRNA-1:exon:2344;Parent=Msa1339970-mRNA-1
tig0003589 CDS 69891 70691 69891 ID=Msa1339970-mRNA-1:cds;Parent=Msa1339970-mRNA-1
Gene Sequence

>Msa1339970

ATGACAATCATAGGTTCATGCAATGGGTTGCTTTGTTTTAGTGATTTCTCTAAATTTACTTTGTGGAATCCTTCTATCAAATTGAAATCCAAACCATCTCCAACCATTATTGCTTTTGATAGTTTTGATAACAAGAGGTTCCTATATCGTGGCTTTGGCTATGATCAAGTTAACGACAGGTACAAGGTCCTAGCAGTTGTGCAAAATTGCTATAATTTGGATGAAACTAAGACCTTAATTTATACCTTTGGGGAAAAAGATTGGACAACTATTCAAAACTTCCCATGTGATCCGCGGTGTGATCCTGGTCGGTTAGGGGTAGGGAAATTTGTGAGCGGCAATTTAAATTGGATAGTTAATAAAAATGCCTTTAGTAAAAAGGTGATAGTTTCCTTTGATATTGAGAAGGAAACGTATGGGGAGATGTCGCTGCCTCAAGATTATCGTGACAAGAATACTGTGTTGTACGTTTCAAGTAACCGTATTTACGTATCTTTTGATCATTCTAACAAAACTCATTGGGTTGTGTGGATGATGAAAGAGTATGGAGTTGTTGAGTCATGGACTAAACTGATGATCATCCCACAGGATAAGTTAACATCACCTGGTCCTTATTGTTTATCTGATGCCTTGTTCATTTCAGAATACGGAGTTCTCTTTATGAGACCCCAGCATTCTAAACTCAGCGTCTATAACTTAAATAATAATGATGGTGGCTTAGATTATTGTACTACAATTTCTGGTCAATTTGCACGTCATCTACATATTTACAACGAGAGTCTGGTATCACCACACTGGTAA
Protein sequence

>Msa1339970

MTIIGSCNGLLCFSDFSKFTLWNPSIKLKSKPSPTIIAFDSFDNKRFLYRGFGYDQVNDRYKVLAVVQNCYNLDETKTLIYTFGEKDWTTIQNFPCDPRCDPGRLGVGKFVSGNLNWIVNKNAFSKKVIVSFDIEKETYGEMSLPQDYRDKNTVLYVSSNRIYVSFDHSNKTHWVVWMMKEYGVVESWTKLMIIPQDKLTSPGPYCLSDALFISEYGVLFMRPQHSKLSVYNLNNNDGGLDYCTTISGQFARHLHIYNESLVSPHW*