AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1211510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211510 MtrunA17_Chr4g0060121 92.748 262 12 3 1 261 128 383 1.78e-177 496
Msa1211510 MtrunA17_Chr4g0060161 92.748 262 12 3 1 261 128 383 2.30e-177 496
Msa1211510 MtrunA17_Chr2g0307531 56.981 265 101 7 1 261 303 558 6.92e-90 278
Msa1211510 MtrunA17_Chr1g0175981 51.504 266 110 9 3 261 143 396 1.22e-73 231
Msa1211510 MtrunA17_Chr1g0171401 51.866 268 109 9 3 261 146 402 1.44e-72 228
Msa1211510 MtrunA17_Chr8g0361601 57.843 204 78 4 1 200 124 323 1.31e-71 224
Msa1211510 MtrunA17_Chr8g0389201 52.963 270 101 10 3 261 138 392 4.44e-71 224
Msa1211510 MtrunA17_Chr1g0201051 47.584 269 114 11 2 258 106 359 4.54e-65 209
Msa1211510 MtrunA17_Chr1g0201191 49.438 267 107 11 3 261 142 388 8.71e-63 203
Msa1211510 MtrunA17_Chr1g0201221 47.940 267 107 13 3 261 129 371 1.37e-58 192
Msa1211510 MtrunA17_Chr2g0303171 41.745 321 141 13 3 292 124 429 7.51e-56 187
Msa1211510 MtrunA17_Chr2g0303001 44.649 271 119 11 3 261 120 371 9.74e-56 184
Msa1211510 MtrunA17_Chr2g0303021 48.727 275 110 16 3 261 123 382 8.07e-55 182
Msa1211510 MtrunA17_Chr2g0303031 45.588 272 115 13 3 261 119 370 2.10e-53 178
Msa1211510 MtrunA17_Chr5g0405671 46.182 275 115 12 2 261 119 375 2.15e-53 178
Msa1211510 MtrunA17_Chr2g0303011 45.818 275 115 14 3 261 123 379 1.01e-52 177
Msa1211510 MtrunA17_Chr2g0302981 43.123 269 127 11 2 261 139 390 3.36e-50 170
Msa1211510 MtrunA17_Chr1g0201061 43.952 248 118 9 27 261 23 262 3.55e-48 161
Msa1211510 MtrunA17_Chr1g0199281 42.678 239 112 7 3 234 152 372 5.70e-45 157
Msa1211510 MtrunA17_Chr1g0201201 49.367 158 66 6 2 155 4 151 8.88e-37 129
Msa1211510 MtrunA17_Chr2g0287071 36.364 253 140 10 3 241 113 358 8.69e-36 132
Msa1211510 MtrunA17_Chr2g0292331 36.331 278 141 15 3 265 148 404 3.35e-34 128
Msa1211510 MtrunA17_Chr2g0287111 35.401 274 151 13 4 265 76 335 3.01e-30 116
Msa1211510 MtrunA17_Chr2g0317091 33.333 273 152 10 4 265 48 301 3.12e-29 113
Msa1211510 MtrunA17_Chr2g0287121 35.252 278 146 14 3 265 116 374 1.46e-28 112
Msa1211510 MtrunA17_Chr3g0091191 41.000 200 87 11 3 194 121 297 2.70e-27 108
Msa1211510 MtrunA17_Chr3g0078471 31.541 279 157 10 1 265 130 388 2.94e-27 109
Msa1211510 MtrunA17_Chr3g0080511 33.333 261 142 12 3 242 332 581 1.26e-25 106
Msa1211510 MtrunA17_Chr3g0078431 34.783 253 131 10 4 236 144 382 1.99e-25 104
Msa1211510 MtrunA17_Chr2g0317101 34.529 223 122 7 6 221 133 338 3.44e-25 103
Msa1211510 MtrunA17_Chr3g0079621 34.199 231 124 11 4 221 127 342 7.92e-25 102
Msa1211510 MtrunA17_Chr3g0078461 36.087 230 115 10 4 215 144 359 2.04e-24 101
Msa1211510 MtrunA17_Chr5g0398251 35.468 203 110 8 3 195 115 306 8.32e-24 99.8
Msa1211510 MtrunA17_Chr3g0078391 34.894 235 122 10 4 222 151 370 8.62e-24 100
Msa1211510 MtrunA17_Chr7g0235861 33.065 248 118 12 3 223 134 360 1.82e-23 99.4
Msa1211510 MtrunA17_Chr7g0236821 29.904 311 154 13 3 266 123 416 1.96e-23 99.4
Msa1211510 MtrunA17_Chr4g0014071 36.190 210 102 8 2 195 97 290 4.96e-23 97.4
Msa1211510 MtrunA17_Chr3g0080461 36.564 227 110 12 1 222 138 335 6.29e-23 97.4
Msa1211510 MtrunA17_Chr3g0081931 34.348 230 130 9 3 222 132 350 6.74e-23 97.4
Msa1211510 MtrunA17_Chr7g0238861 30.841 214 130 6 3 199 127 339 7.46e-23 97.4
Msa1211510 MtrunA17_Chr6g0461091 32.302 291 156 14 1 265 55 330 7.74e-23 96.3
Msa1211510 MtrunA17_Chr5g0395401 31.469 286 163 11 3 268 111 383 9.93e-23 96.7
Msa1211510 MtrunA17_Chr6g0477631 33.456 272 151 12 4 265 109 360 1.01e-22 96.3
Msa1211510 MtrunA17_Chr3g0078161 32.883 222 122 9 6 222 126 325 1.16e-22 96.3
Msa1211510 MtrunA17_Chr6g0461101 31.615 291 152 14 1 265 107 376 1.23e-22 96.3
Msa1211510 MtrunA17_Chr3g0121321 30.798 263 164 8 6 265 177 424 1.43e-22 96.7
Msa1211510 MtrunA17_Chr6g0457201 31.651 218 116 9 3 194 123 333 1.43e-22 96.7
Msa1211510 MtrunA17_Chr3g0082421 36.493 211 99 11 4 195 122 316 1.74e-22 95.9
Msa1211510 MtrunA17_Chr4g0019271 31.925 213 114 10 3 192 115 319 1.78e-22 96.3
Msa1211510 MtrunA17_Chr5g0423801 30.800 250 147 12 4 242 141 375 2.52e-22 95.9
Msa1211510 MtrunA17_Chr3g0079611 33.500 200 112 8 4 194 139 326 4.09e-22 95.1
Msa1211510 MtrunA17_Chr3g0086501 34.118 255 129 14 2 235 57 293 5.63e-22 93.6
Msa1211510 MtrunA17_Chr7g0236001 30.877 285 140 14 3 258 130 386 5.97e-22 94.7
Msa1211510 MtrunA17_Chr7g0214991 31.379 290 148 14 4 265 134 400 6.49e-22 94.7
Msa1211510 MtrunA17_Chr4g0030261 36.866 217 92 11 4 194 118 315 6.75e-22 94.4
Msa1211510 MtrunA17_Chr3g0078231 33.168 202 116 7 3 194 144 336 8.95e-22 94.4
Msa1211510 MtrunA17_Chr6g0450771 30.196 255 146 12 1 235 122 364 1.17e-21 94.0
Msa1211510 MtrunA17_Chr3g0080471 31.970 269 142 13 3 261 152 389 1.45e-21 93.6
Msa1211510 MtrunA17_Chr6g0457171 32.870 216 117 12 3 194 106 317 1.75e-21 93.6
Msa1211510 MtrunA17_Chr3g0094241 30.855 269 162 12 4 265 149 400 2.12e-21 93.2
Msa1211510 MtrunA17_Chr5g0423791 30.496 282 150 15 4 265 141 396 4.23e-21 92.4
Msa1211510 MtrunA17_Chr3g0078421 34.653 202 111 9 4 194 124 315 4.49e-21 92.0
Msa1211510 MtrunA17_Chr3g0078211 29.861 288 164 10 4 265 19 294 4.69e-21 90.9
Msa1211510 MtrunA17_Chr3g0080301 31.452 248 126 10 3 239 138 352 6.12e-21 91.7
Msa1211510 MtrunA17_Chr7g0234911 29.153 295 143 16 1 238 116 401 9.11e-21 91.7
Msa1211510 MtrunA17_Chr4g0027011 33.816 207 114 8 2 194 124 321 9.75e-21 91.3
Msa1211510 MtrunA17_Chr7g0234941 29.492 295 142 17 1 238 116 401 1.39e-20 91.3
Msa1211510 MtrunA17_Chr1g0176891 35.577 208 106 11 2 195 104 297 2.00e-20 90.1
Msa1211510 MtrunA17_Chr1g0212221 30.435 276 145 12 4 261 118 364 2.43e-20 89.7
Msa1211510 MtrunA17_Chr7g0236331 30.876 217 128 10 3 199 117 331 3.01e-20 89.7
Msa1211510 MtrunA17_Chr6g0449371 33.005 203 120 7 3 194 117 314 4.31e-20 89.4
Msa1211510 MtrunA17_Chr2g0301321 32.231 242 123 12 3 223 134 355 4.44e-20 89.0
Msa1211510 MtrunA17_Chr7g0228911 31.273 275 157 14 4 265 136 391 4.79e-20 89.4
Msa1211510 MtrunA17_Chr6g0470221 33.668 199 119 6 3 195 125 316 4.80e-20 89.4
Msa1211510 MtrunA17_Chr4g0010531 28.936 235 142 9 3 226 96 316 4.95e-20 89.0
Msa1211510 MtrunA17_Chr3g0080291 33.065 248 124 12 1 232 135 356 5.89e-20 89.0
Msa1211510 MtrunA17_Chr4g0072971 32.589 224 116 13 3 199 119 334 6.25e-20 88.6
Msa1211510 MtrunA17_Chr7g0229701 35.329 167 97 4 33 198 97 253 7.80e-20 87.8
Msa1211510 MtrunA17_Chr7g0218951 30.488 246 153 8 3 236 126 365 7.99e-20 88.6
Msa1211510 MtrunA17_Chr3g0082011 30.180 222 112 10 4 192 103 314 8.03e-20 88.6
Msa1211510 MtrunA17_Chr6g0457191 31.163 215 122 10 3 194 80 291 1.06e-19 88.2
Msa1211510 MtrunA17_Chr2g0303301 30.698 215 111 9 4 191 119 322 1.07e-19 88.2
Msa1211510 MtrunA17_Chr2g0301311 31.317 281 143 13 3 258 133 388 1.09e-19 88.6
Msa1211510 MtrunA17_Chr3g0090591 33.171 205 111 9 4 191 133 328 1.14e-19 88.2
Msa1211510 MtrunA17_Chr6g0453851 31.405 242 145 10 4 236 132 361 1.44e-19 87.8
Msa1211510 MtrunA17_Chr4g0075791 30.180 222 117 9 1 198 86 293 1.66e-19 87.8
Msa1211510 MtrunA17_Chr7g0243791 29.167 288 141 12 3 235 114 393 1.71e-19 87.8
Msa1211510 MtrunA17_Chr7g0257571 30.603 232 118 10 3 201 129 350 1.87e-19 87.8
Msa1211510 MtrunA17_Chr5g0423781 29.670 273 154 12 3 265 140 384 1.91e-19 87.4
Msa1211510 MtrunA17_Chr3g0086491 30.830 253 147 11 4 253 150 377 2.11e-19 87.4
Msa1211510 MtrunA17_Chr3g0114671 31.136 273 134 13 3 248 130 375 2.43e-19 87.4
Msa1211510 MtrunA17_Chr7g0238881 31.280 211 116 8 3 192 119 321 2.57e-19 87.4
Msa1211510 MtrunA17_Chr6g0458161 31.984 247 143 12 3 235 119 354 2.73e-19 87.0
Msa1211510 MtrunA17_Chr5g0396471 29.310 290 147 11 4 266 150 408 2.84e-19 87.0
Msa1211510 MtrunA17_Chr7g0235421 30.909 220 109 8 3 194 118 322 2.97e-19 87.0
Msa1211510 MtrunA17_Chr3g0080191 34.450 209 111 10 4 194 136 336 3.06e-19 87.0
Msa1211510 MtrunA17_Chr7g0238791 28.708 209 123 6 2 192 138 338 3.72e-19 87.0
Msa1211510 MtrunA17_Chr3g0088911 31.273 275 160 12 2 261 128 388 3.97e-19 86.7
Msa1211510 MtrunA17_Chr7g0241011 30.667 225 123 9 3 199 118 337 8.16e-19 85.9
Msa1211510 MtrunA17_Chr6g0470191 31.905 210 115 7 2 195 124 321 9.50e-19 85.5
Msa1211510 MtrunA17_Chr3g0091221 31.655 278 144 14 4 261 141 392 9.54e-19 85.5
Msa1211510 MtrunA17_Chr7g0243531 32.243 214 116 10 3 192 95 303 9.92e-19 85.5
Msa1211510 MtrunA17_Chr3g0130191 29.630 270 148 11 4 265 61 296 1.11e-18 84.3
Msa1211510 MtrunA17_Chr5g0419931 33.505 194 108 7 6 191 100 280 1.13e-18 85.1
Msa1211510 MtrunA17_Chr6g0459941 30.233 215 121 7 3 194 116 324 1.24e-18 85.1
Msa1211510 MtrunA17_Chr4g0010581 29.245 212 132 7 3 205 96 298 1.41e-18 84.7
Msa1211510 MtrunA17_Chr8g0366331 28.090 267 152 11 3 236 119 378 1.85e-18 84.7
Msa1211510 MtrunA17_Chr6g0454491 30.705 241 147 9 4 236 128 356 2.31e-18 84.3
Msa1211510 MtrunA17_Chr4g0010541 28.033 239 146 8 1 232 100 319 2.45e-18 84.0
Msa1211510 MtrunA17_Chr1g0176211 29.688 256 139 13 3 236 115 351 2.72e-18 84.0
Msa1211510 MtrunA17_Chr2g0291141 26.415 265 157 10 1 233 102 360 2.86e-18 84.3
Msa1211510 MtrunA17_Chr2g0303121 29.767 215 114 10 3 191 119 322 3.46e-18 84.0
Msa1211510 MtrunA17_Chr2g0308131 29.187 209 126 7 3 201 106 302 4.37e-18 83.2
Msa1211510 MtrunA17_Chr3g0082441 31.102 254 143 11 4 240 122 360 5.46e-18 83.2
Msa1211510 MtrunA17_Chr5g0419911 33.505 194 108 7 6 191 3 183 5.92e-18 81.6
Msa1211510 MtrunA17_Chr7g0241051 28.947 266 152 10 3 235 105 366 7.38e-18 83.2
Msa1211510 MtrunA17_Chr2g0295641 31.387 274 148 15 3 261 46 294 1.02e-17 81.6
Msa1211510 MtrunA17_Chr3g0088881 32.547 212 120 9 6 215 138 328 1.09e-17 82.4
Msa1211510 MtrunA17_Chr3g0078451 31.963 219 121 9 51 261 4 202 1.09e-17 79.7
Msa1211510 MtrunA17_Chr3g0088871 30.198 202 103 8 2 195 138 309 1.17e-17 82.4
Msa1211510 MtrunA17_Chr7g0247401 28.520 277 151 13 2 236 121 392 1.20e-17 82.8
Msa1211510 MtrunA17_Chr4g0010591 26.692 266 163 9 4 261 32 273 1.34e-17 80.9
Msa1211510 MtrunA17_Chr7g0241021 27.839 273 148 11 3 235 116 379 1.92e-17 82.0
Msa1211510 MtrunA17_Chr5g0419921 33.505 194 108 7 6 191 100 280 2.07e-17 81.3
Msa1211510 MtrunA17_Chr7g0238771 27.404 208 126 7 2 192 138 337 2.10e-17 81.6
Msa1211510 MtrunA17_Chr3g0086431 33.019 212 115 10 6 215 130 316 2.53e-17 81.3
Msa1211510 MtrunA17_Chr1g0182401 26.459 257 155 8 1 235 87 331 2.63e-17 81.3
Msa1211510 MtrunA17_Chr6g0455961 30.222 225 113 10 3 191 115 331 2.66e-17 81.6
Msa1211510 MtrunA17_Chr4g0013661 31.963 219 106 11 3 191 116 321 3.09e-17 81.3
Msa1211510 MtrunA17_Chr3g0079631 32.174 230 128 12 4 221 131 344 3.39e-17 80.9
Msa1211510 MtrunA17_Chr3g0080281 30.472 233 132 9 6 232 122 330 3.41e-17 80.9
Msa1211510 MtrunA17_Chr3g0105221 30.396 227 117 11 3 201 119 332 3.52e-17 81.3
Msa1211510 MtrunA17_Chr6g0468711 31.429 245 139 9 5 235 145 374 4.06e-17 80.9
Msa1211510 MtrunA17_Chr4g0008881 28.175 252 122 11 3 215 108 339 4.46e-17 80.9
Msa1211510 MtrunA17_Chr1g0212281 30.081 246 140 11 4 236 143 369 4.61e-17 80.9
Msa1211510 MtrunA17_Chr7g0248561 28.632 234 125 8 3 199 120 348 4.74e-17 80.9
Msa1211510 MtrunA17_Chr3g0101941 36.810 163 77 9 3 151 141 291 5.04e-17 79.7
Msa1211510 MtrunA17_Chr4g0010611 29.703 202 123 7 3 197 103 292 7.25e-17 79.7
Msa1211510 MtrunA17_Chr5g0419901 30.000 190 105 7 6 191 3 168 9.20e-17 76.6
Msa1211510 MtrunA17_Chr3g0086471 29.391 279 158 13 3 266 121 375 9.65e-17 79.7
Msa1211510 MtrunA17_Chr1g0182421 25.792 221 139 6 1 202 87 301 1.24e-16 79.3
Msa1211510 MtrunA17_Chr7g0247961 30.317 221 119 10 2 194 137 350 1.92e-16 79.3
Msa1211510 MtrunA17_Chr4g0004041 29.646 226 116 9 3 191 120 339 2.16e-16 79.0
Msa1211510 MtrunA17_Chr3g0088901 30.256 195 119 7 3 195 118 297 2.56e-16 78.6
Msa1211510 MtrunA17_Chr3g0120931 26.692 266 157 11 1 232 104 365 2.60e-16 78.6
Msa1211510 MtrunA17_Chr1g0211571 28.405 257 169 7 4 256 109 354 2.76e-16 78.2
Msa1211510 MtrunA17_Chr6g0457181 30.556 216 120 9 3 194 103 312 3.50e-16 78.2
Msa1211510 MtrunA17_Chr3g0080891 33.500 200 106 11 4 191 170 354 3.71e-16 78.2
Msa1211510 MtrunA17_Chr7g0224791 27.000 300 162 13 2 265 102 380 4.00e-16 77.8
Msa1211510 MtrunA17_Chr7g0235411 29.858 211 111 9 3 194 119 311 4.29e-16 77.8
Msa1211510 MtrunA17_Chr4g0011441 29.911 224 118 10 3 201 137 346 5.08e-16 77.8
Msa1211510 MtrunA17_Chr3g0101891 32.889 225 107 10 3 215 134 326 5.11e-16 77.4
Msa1211510 MtrunA17_Chr4g0009891 26.891 238 151 10 1 232 100 320 7.45e-16 77.0
Msa1211510 MtrunA17_Chr3g0078171 27.240 279 157 13 6 265 147 398 8.43e-16 77.0
Msa1211510 MtrunA17_Chr2g0303131 26.977 215 119 8 3 192 114 315 8.52e-16 77.0
Msa1211510 MtrunA17_Chr7g0257581 29.075 227 126 11 3 201 130 349 9.40e-16 76.6
Msa1211510 MtrunA17_Chr1g0177191 31.579 228 128 10 3 215 125 339 9.61e-16 77.0
Msa1211510 MtrunA17_Chr7g0241641 27.556 225 118 9 3 199 120 327 9.67e-16 77.0
Msa1211510 MtrunA17_Chr5g0423291 29.289 239 117 9 3 194 111 344 9.96e-16 77.0
Msa1211510 MtrunA17_Chr3g0134731 28.571 210 135 6 1 201 111 314 1.01e-15 76.6
Msa1211510 MtrunA17_Chr4g0072991 26.667 225 121 9 3 194 127 340 1.02e-15 77.0
Msa1211510 MtrunA17_Chr5g0429621 28.044 271 143 12 1 236 99 352 1.05e-15 76.6
Msa1211510 MtrunA17_Chr2g0291151 28.085 235 128 10 1 202 103 329 1.87e-15 76.3
Msa1211510 MtrunA17_Chr2g0289011 28.070 228 131 10 5 208 93 311 1.95e-15 75.9
Msa1211510 MtrunA17_Chr6g0470791 29.515 227 117 10 3 194 116 334 2.17e-15 75.9
Msa1211510 MtrunA17_Chr3g0119511 28.261 230 117 8 3 194 115 334 2.45e-15 75.9
Msa1211510 MtrunA17_Chr7g0248001 28.507 221 133 6 3 199 142 361 2.58e-15 75.9
Msa1211510 MtrunA17_Chr1g0210611 27.670 206 111 8 3 200 76 251 3.08e-15 74.7
Msa1211510 MtrunA17_Chr7g0241031 30.252 238 102 12 3 199 25 239 3.10e-15 74.7
Msa1211510 MtrunA17_Chr7g0248611 29.075 227 120 10 3 199 158 373 3.25e-15 75.5
Msa1211510 MtrunA17_Chr7g0234991 29.915 234 118 13 44 238 3 229 3.28e-15 73.9
Msa1211510 MtrunA17_Chr4g0015211 26.821 302 168 12 1 265 121 406 3.56e-15 75.1
Msa1211510 MtrunA17_Chr3g0086441 33.005 203 109 8 7 198 138 324 3.60e-15 75.1
Msa1211510 MtrunA17_Chr4g0010631 27.638 199 131 5 3 197 103 292 5.30e-15 74.3
Msa1211510 MtrunA17_Chr1g0176571 32.701 211 115 11 4 196 19 220 5.51e-15 73.6
Msa1211510 MtrunA17_Chr5g0428441 27.391 230 115 9 3 199 110 320 5.92e-15 74.7
Msa1211510 MtrunA17_Chr1g0184891 29.008 262 149 12 3 236 109 361 7.10e-15 74.3
Msa1211510 MtrunA17_Chr5g0418291 27.907 215 131 9 3 194 166 379 7.16e-15 74.7
Msa1211510 MtrunA17_Chr5g0429561 26.804 291 167 11 3 265 99 371 7.27e-15 73.9
Msa1211510 MtrunA17_Chr3g0080491 31.797 217 90 11 4 198 131 311 1.02e-14 73.6
Msa1211510 MtrunA17_Chr2g0284671 25.692 253 152 9 3 236 94 329 1.07e-14 73.6
Msa1211510 MtrunA17_Chr6g0468701 30.000 200 124 8 5 195 140 332 1.07e-14 73.9
Msa1211510 MtrunA17_Chr7g0235401 29.032 217 116 8 3 194 102 305 1.09e-14 73.6
Msa1211510 MtrunA17_Chr3g0086511 29.876 241 132 11 6 232 139 356 1.20e-14 73.6
Msa1211510 MtrunA17_Chr1g0176581 31.401 207 102 10 3 195 213 393 1.46e-14 73.6
Msa1211510 MtrunA17_Chr4g0010561 26.538 260 170 8 3 253 138 385 1.46e-14 73.6
Msa1211510 MtrunA17_Chr4g0010621 29.208 202 123 7 3 197 103 291 1.74e-14 72.8
Msa1211510 MtrunA17_Chr7g0236711 27.803 223 122 10 1 199 109 316 1.82e-14 73.2
Msa1211510 MtrunA17_Chr7g0236761 26.697 221 134 9 3 199 122 338 3.28e-14 72.4
Msa1211510 MtrunA17_Chr2g0293241 26.000 250 164 9 1 233 88 333 3.46e-14 72.0
Msa1211510 MtrunA17_Chr5g0409701 26.263 198 131 5 2 191 151 341 3.52e-14 72.4
Msa1211510 MtrunA17_Chr7g0238801 26.894 264 163 8 1 238 115 374 4.28e-14 72.0
Msa1211510 MtrunA17_Chr6g0486691 28.319 226 122 8 3 194 174 393 4.47e-14 72.0
Msa1211510 MtrunA17_Chr5g0409661 26.396 197 130 5 3 191 152 341 5.92e-14 71.6
Msa1211510 MtrunA17_Chr7g0248601 25.984 254 115 8 10 236 62 269 7.01e-14 70.9
Msa1211510 MtrunA17_Chr1g0201181 50.000 84 37 4 179 261 1 80 7.22e-14 68.6
Msa1211510 MtrunA17_Chr1g0195191 28.761 226 120 11 3 194 107 325 7.37e-14 71.2
Msa1211510 MtrunA17_Chr8g0350131 28.922 204 132 9 3 197 131 330 7.62e-14 71.2
Msa1211510 MtrunA17_Chr5g0423731 34.000 150 87 7 50 195 2 143 8.95e-14 68.9
Msa1211510 MtrunA17_Chr5g0402341 32.317 164 99 5 75 236 34 187 9.29e-14 68.6
Msa1211510 MtrunA17_Chr4g0075281 32.836 201 111 9 53 237 41 233 1.55e-13 69.3
Msa1211510 MtrunA17_Chr7g0234411 25.573 262 131 12 3 209 124 376 1.69e-13 70.5
Msa1211510 MtrunA17_Chr7g0238531 27.243 301 150 15 2 261 119 391 1.71e-13 70.1
Msa1211510 MtrunA17_Chr6g0477321 27.083 288 166 15 8 265 8 281 2.12e-13 68.9
Msa1211510 MtrunA17_Chr3g0101931 32.692 208 89 10 3 198 139 307 2.30e-13 69.7
Msa1211510 MtrunA17_Chr2g0293311 27.016 248 160 10 3 233 94 337 4.82e-13 68.9
Msa1211510 MtrunA17_Chr7g0238611 26.957 230 130 9 3 205 128 346 5.07e-13 68.9
Msa1211510 MtrunA17_Chr4g0065061 26.866 201 132 8 5 199 121 312 5.20e-13 68.6
Msa1211510 MtrunA17_Chr6g0476271 28.218 202 134 6 6 201 113 309 5.88e-13 68.6
Msa1211510 MtrunA17_Chr7g0235791 28.182 220 95 9 3 194 116 300 7.56e-13 67.8
Msa1211510 MtrunA17_Chr2g0293281 26.275 255 163 9 1 237 87 334 8.79e-13 68.2
Msa1211510 MtrunA17_Chr2g0289981 25.847 236 126 9 2 200 95 318 9.54e-13 68.2
Msa1211510 MtrunA17_Chr1g0169061 28.889 225 118 10 8 202 153 365 1.02e-12 68.2
Msa1211510 MtrunA17_Chr3g0130181 33.775 151 73 6 4 150 54 181 1.18e-12 65.5
Msa1211510 MtrunA17_Chr2g0290021 27.570 214 128 8 1 191 101 310 1.24e-12 67.8
Msa1211510 MtrunA17_Chr4g0066041 30.093 216 131 9 3 206 103 310 1.38e-12 67.4
Msa1211510 MtrunA17_Chr3g0078201 32.335 167 87 6 108 265 3 152 1.94e-12 63.9
Msa1211510 MtrunA17_Chr7g0238601 26.201 229 129 8 3 205 111 325 2.04e-12 67.0
Msa1211510 MtrunA17_Chr2g0303291 28.713 202 114 8 3 192 112 295 2.06e-12 67.0
Msa1211510 MtrunA17_Chr1g0169751 28.378 222 106 7 3 187 110 315 2.21e-12 66.6
Msa1211510 MtrunA17_Chr2g0289991 24.242 231 149 7 1 208 96 323 2.66e-12 66.6
Msa1211510 MtrunA17_Chr6g0449051 28.631 241 133 11 3 215 129 358 2.82e-12 66.6
Msa1211510 MtrunA17_Chr7g0228821 25.098 255 165 9 3 236 121 370 3.05e-12 66.6
Msa1211510 MtrunA17_Chr2g0291161 26.022 269 155 12 1 233 102 362 4.04e-12 66.2
Msa1211510 MtrunA17_Chr1g0174021 28.372 215 122 9 51 236 34 245 5.77e-12 65.1
Msa1211510 MtrunA17_Chr7g0248641 28.632 234 125 10 3 199 125 353 5.91e-12 65.9
Msa1211510 MtrunA17_Chr4g0004781 27.232 224 124 8 3 194 121 337 7.06e-12 65.5
Msa1211510 MtrunA17_Chr3g0078401 33.974 156 85 6 51 200 3 146 8.08e-12 63.5
Msa1211510 MtrunA17_Chr7g0238591 27.111 225 124 8 3 201 108 318 8.64e-12 65.1
Msa1211510 MtrunA17_Chr3g0079601 31.953 169 96 6 73 232 12 170 9.90e-12 62.8
Msa1211510 MtrunA17_Chr7g0248571 28.750 160 97 4 3 150 120 274 1.12e-11 63.9
Msa1211510 MtrunA17_Chr4g0035241 26.244 221 124 9 1 189 97 310 1.14e-11 64.7
Msa1211510 MtrunA17_Chr6g0488481 27.632 228 115 12 3 195 107 319 1.23e-11 64.7
Msa1211510 MtrunA17_Chr8g0388151 27.826 230 127 9 1 201 89 308 1.58e-11 64.3
Msa1211510 MtrunA17_Chr3g0090301 28.378 222 119 11 1 197 102 308 1.61e-11 64.3
Msa1211510 MtrunA17_Chr1g0159651 29.384 211 118 10 3 194 114 312 2.11e-11 63.9
Msa1211510 MtrunA17_Chr7g0236781 28.037 214 122 10 4 192 123 329 2.16e-11 63.9
Msa1211510 MtrunA17_Chr2g0277521 28.218 202 112 8 47 236 44 224 2.27e-11 62.8
Msa1211510 MtrunA17_Chr5g0424381 28.455 246 127 13 19 234 167 393 2.65e-11 63.9
Msa1211510 MtrunA17_Chr7g0243001 26.457 223 121 10 5 194 123 335 3.12e-11 63.5
Msa1211510 MtrunA17_Chr5g0447601 24.800 250 154 9 5 233 133 369 3.33e-11 63.5
Msa1211510 MtrunA17_Chr2g0292441 33.094 139 62 7 8 145 7 115 3.38e-11 59.7
Msa1211510 MtrunA17_Chr3g0088891 25.436 287 169 12 4 265 126 392 3.72e-11 63.2
Msa1211510 MtrunA17_Chr2g0290081 27.854 219 126 10 1 194 86 297 5.44e-11 62.8
Msa1211510 MtrunA17_Chr4g0066421 27.638 199 119 8 21 206 34 220 5.51e-11 62.0
Msa1211510 MtrunA17_Chr7g0235671 32.484 157 77 8 108 236 6 161 5.79e-11 61.2
Msa1211510 MtrunA17_Chr5g0447471 28.358 201 128 7 3 195 102 294 5.91e-11 62.4
Msa1211510 MtrunA17_Chr7g0248931 31.056 161 95 8 3 148 80 239 6.97e-11 61.6
Msa1211510 MtrunA17_Chr4g0013651 26.230 244 127 9 3 223 130 343 7.20e-11 62.4
Msa1211510 MtrunA17_Chr5g0429701 24.500 200 141 5 5 197 121 317 7.28e-11 62.4
Msa1211510 MtrunA17_Chr2g0303281 27.928 222 116 13 4 192 104 314 8.12e-11 62.0
Msa1211510 MtrunA17_Chr3g0090291 28.054 221 127 11 1 200 102 311 9.40e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211510 AT3G23880.1 29.600 250 158 10 3 248 112 347 2.16e-19 87.4
Msa1211510 AT3G06240.1 28.358 201 130 7 1 193 163 357 3.80e-16 78.6
Msa1211510 AT4G21240.1 27.586 203 120 7 6 195 131 319 5.85e-14 72.0
Msa1211510 AT4G12560.1 24.324 222 137 8 3 198 91 307 7.17e-12 65.9
Msa1211510 AT4G12560.2 24.324 222 137 8 3 198 91 307 7.17e-12 65.9
Msa1211510 AT4G12560.3 24.324 222 137 8 3 198 91 307 7.17e-12 65.9

Find 59 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTATTGTACTACAATTTC+TGG 0.178247 8_1:-71240341 Msa1211510:CDS
TGTGCAAAATTGCTATAATT+TGG 0.211765 8_1:-71240864 Msa1211510:CDS
TTGTGAGCGGCAATTTAAAT+TGG 0.243238 8_1:-71240733 Msa1211510:CDS
TTCCCCAAAGGTATAAATTA+AGG 0.248612 8_1:+71240829 None:intergenic
AGACCTTAATTTATACCTTT+GGG 0.295333 8_1:-71240832 Msa1211510:CDS
CGGTGTGATCCTGGTCGGTT+AGG 0.308858 8_1:-71240767 Msa1211510:CDS
AAGACCTTAATTTATACCTT+TGG 0.321657 8_1:-71240833 Msa1211510:CDS
TTGGATTTCAATTTGATAGA+AGG 0.327875 8_1:+71240992 None:intergenic
ATCATTCTAACAAAACTCAT+TGG 0.343739 8_1:-71240562 Msa1211510:CDS
AAAACTATCAAAAGCAATAA+TGG 0.352454 8_1:+71240958 None:intergenic
GCCTTGTTCATTTCAGAATA+CGG 0.376442 8_1:-71240434 Msa1211510:CDS
AATAATGGTTGGAGATGGTT+TGG 0.394416 8_1:+71240973 None:intergenic
ATTTCTCTAAATTTACTTTG+TGG 0.401816 8_1:-71241018 Msa1211510:CDS
AAGGCATCAGATAAACAATA+AGG 0.413031 8_1:+71240452 None:intergenic
GTGTGGATGATGAAAGAGTA+TGG 0.424064 8_1:-71240536 Msa1211510:CDS
CATAGCCAAAGCCACGATAT+AGG 0.432965 8_1:+71240921 None:intergenic
GACGCTGAGTTTAGAATGCT+GGG 0.446672 8_1:+71240394 None:intergenic
AGACGCTGAGTTTAGAATGC+TGG 0.452138 8_1:+71240393 None:intergenic
TCATTCTAACAAAACTCATT+GGG 0.456268 8_1:-71240561 Msa1211510:CDS
ACCACATCAATGACAATCAT+AGG 0.457087 8_1:-71241070 None:intergenic
TGTGATCCGCGGTGTGATCC+TGG 0.460891 8_1:-71240776 Msa1211510:CDS
TACTTTACATGAAGAAGCAT+TGG 0.461174 8_1:-71240131 Msa1211510:CDS
GGTGTGATCCTGGTCGGTTA+GGG 0.463251 8_1:-71240766 Msa1211510:CDS
AGGTTCCTATATCGTGGCTT+TGG 0.476733 8_1:-71240926 Msa1211510:CDS
ATCCTGGTCGGTTAGGGGTA+GGG 0.484380 8_1:-71240760 Msa1211510:CDS
GATCCTGGTCGGTTAGGGGT+AGG 0.487768 8_1:-71240761 Msa1211510:CDS
CAATCATAGGTTCATGCAAT+GGG 0.490077 8_1:-71241057 Msa1211510:CDS
ACATATTTACAACGAGAGTC+TGG 0.494959 8_1:-71240300 Msa1211510:intron
GATATTCAGAAGGAAACGTA+TGG 0.499871 8_1:-71240665 Msa1211510:CDS
GATCAAAAGATACGTAAATA+CGG 0.500866 8_1:+71240582 None:intergenic
GACCTTAATTTATACCTTTG+GGG 0.512190 8_1:-71240831 Msa1211510:CDS
TATAACTTAAATAATAATGA+TGG 0.519682 8_1:-71240371 Msa1211510:CDS
GGATCACACCGCGGATCACA+TGG 0.525421 8_1:+71240779 None:intergenic
TTCCCTACCCCTAACCGACC+AGG 0.539323 8_1:+71240758 None:intergenic
AGTATGGAGTTGTTGAGTCA+TGG 0.550884 8_1:-71240520 Msa1211510:CDS
CTATCAAAAGCAATAATGGT+TGG 0.554081 8_1:+71240962 None:intergenic
CAGGATAAGTTAACATCACC+TGG 0.561698 8_1:-71240476 Msa1211510:CDS
AAAGCAATAATGGTTGGAGA+TGG 0.566244 8_1:+71240968 None:intergenic
GCTATGATCAAGTTAACGAC+AGG 0.568855 8_1:-71240904 Msa1211510:CDS
ATATTCAGAAGGAAACGTAT+GGG 0.572453 8_1:-71240664 Msa1211510:CDS
ACAATCATAGGTTCATGCAA+TGG 0.578804 8_1:-71241058 Msa1211510:CDS
ACAAAACTCATTGGGTTGTG+TGG 0.583497 8_1:-71240553 Msa1211510:CDS
TCAAGTTAACGACAGGTACA+AGG 0.599173 8_1:-71240897 Msa1211510:CDS
TTCTTGTCACGATAATCTTG+AGG 0.615593 8_1:+71240629 None:intergenic
AACAAGAGGTTCCTATATCG+TGG 0.617572 8_1:-71240932 Msa1211510:CDS
GGTGATGTTAACTTATCCTG+TGG 0.621388 8_1:+71240479 None:intergenic
AACTTAAATAATAATGATGG+TGG 0.622729 8_1:-71240368 Msa1211510:CDS
AGAATGTTTATGTTGTGTTG+TGG 0.626501 8_1:-71240179 Msa1211510:CDS
TCAGATAAACAATAAGGACC+AGG 0.640865 8_1:+71240458 None:intergenic
GTGTGATCCTGGTCGGTTAG+GGG 0.642756 8_1:-71240765 Msa1211510:CDS
ATCCGCGGTGTGATCCTGGT+CGG 0.646030 8_1:-71240772 Msa1211510:CDS
AAAACTTCCCATGTGATCCG+CGG 0.655403 8_1:-71240787 Msa1211510:CDS
TAAACTGATGATCATCCCAC+AGG 0.656896 8_1:-71240495 Msa1211510:CDS
TCCGTATTCTGAAATGAACA+AGG 0.659512 8_1:+71240433 None:intergenic
GTGATGTTAACTTATCCTGT+GGG 0.672212 8_1:+71240480 None:intergenic
TATTCAGAAGGAAACGTATG+GGG 0.675581 8_1:-71240663 Msa1211510:CDS
GATCACACCGCGGATCACAT+GGG 0.689223 8_1:+71240780 None:intergenic
GGGGTAGGGAAATTTGTGAG+CGG 0.697024 8_1:-71240746 Msa1211510:CDS
ACGCTGAGTTTAGAATGCTG+GGG 0.710023 8_1:+71240395 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAACTTAAATAATAATGA+TGG - chr8_1:71240792-71240811 Msa1211510:CDS 10.0%
!! TATAACTTAAATAATAATGA+TGG - chr8_1:71240792-71240811 Msa1211510:CDS 10.0%
!! ATTTCTCTAAATTTACTTTG+TGG - chr8_1:71240145-71240164 Msa1211510:CDS 20.0%
!! AAAACTATCAAAAGCAATAA+TGG + chr8_1:71240208-71240227 None:intergenic 20.0%
!! TAAAAATGCCTTTAGTAAAA+AGG - chr8_1:71240461-71240480 Msa1211510:CDS 20.0%
!! AACTTAAATAATAATGATGG+TGG - chr8_1:71240795-71240814 Msa1211510:CDS 20.0%
!! ATTTCTCTAAATTTACTTTG+TGG - chr8_1:71240145-71240164 Msa1211510:CDS 20.0%
!! AAAACTATCAAAAGCAATAA+TGG + chr8_1:71240208-71240227 None:intergenic 20.0%
!! TAAAAATGCCTTTAGTAAAA+AGG - chr8_1:71240461-71240480 Msa1211510:CDS 20.0%
!! AACTTAAATAATAATGATGG+TGG - chr8_1:71240795-71240814 Msa1211510:CDS 20.0%
! TTGGATTTCAATTTGATAGA+AGG + chr8_1:71240174-71240193 None:intergenic 25.0%
!!! TTGATAGTTTTGATAACAAG+AGG - chr8_1:71240217-71240236 Msa1211510:intron 25.0%
! TGTGCAAAATTGCTATAATT+TGG - chr8_1:71240299-71240318 Msa1211510:intron 25.0%
! AAGACCTTAATTTATACCTT+TGG - chr8_1:71240330-71240349 Msa1211510:CDS 25.0%
! AGACCTTAATTTATACCTTT+GGG - chr8_1:71240331-71240350 Msa1211510:CDS 25.0%
!! AACTATCACCTTTTTACTAA+AGG + chr8_1:71240472-71240491 None:intergenic 25.0%
!! AGTTTTCTTTGATATTCAGA+AGG - chr8_1:71240488-71240507 Msa1211510:CDS 25.0%
! GATCAAAAGATACGTAAATA+CGG + chr8_1:71240584-71240603 None:intergenic 25.0%
! ATCATTCTAACAAAACTCAT+TGG - chr8_1:71240601-71240620 Msa1211510:CDS 25.0%
! TCATTCTAACAAAACTCATT+GGG - chr8_1:71240602-71240621 Msa1211510:CDS 25.0%
! GATTATTGTACTACAATTTC+TGG - chr8_1:71240822-71240841 Msa1211510:CDS 25.0%
! ATATATATGAATTACCAGTG+TGG + chr8_1:71240894-71240913 None:intergenic 25.0%
!! CTTCTTTTTAATCTATTCAG+AGG - chr8_1:71240959-71240978 Msa1211510:CDS 25.0%
! TTGGATTTCAATTTGATAGA+AGG + chr8_1:71240174-71240193 None:intergenic 25.0%
!!! TTGATAGTTTTGATAACAAG+AGG - chr8_1:71240217-71240236 Msa1211510:intron 25.0%
! TGTGCAAAATTGCTATAATT+TGG - chr8_1:71240299-71240318 Msa1211510:intron 25.0%
! AAGACCTTAATTTATACCTT+TGG - chr8_1:71240330-71240349 Msa1211510:CDS 25.0%
! AGACCTTAATTTATACCTTT+GGG - chr8_1:71240331-71240350 Msa1211510:CDS 25.0%
!! AACTATCACCTTTTTACTAA+AGG + chr8_1:71240472-71240491 None:intergenic 25.0%
!! AGTTTTCTTTGATATTCAGA+AGG - chr8_1:71240488-71240507 Msa1211510:CDS 25.0%
! GATCAAAAGATACGTAAATA+CGG + chr8_1:71240584-71240603 None:intergenic 25.0%
! ATCATTCTAACAAAACTCAT+TGG - chr8_1:71240601-71240620 Msa1211510:CDS 25.0%
! TCATTCTAACAAAACTCATT+GGG - chr8_1:71240602-71240621 Msa1211510:CDS 25.0%
! GATTATTGTACTACAATTTC+TGG - chr8_1:71240822-71240841 Msa1211510:CDS 25.0%
! ATATATATGAATTACCAGTG+TGG + chr8_1:71240894-71240913 None:intergenic 25.0%
!! CTTCTTTTTAATCTATTCAG+AGG - chr8_1:71240959-71240978 Msa1211510:CDS 25.0%
CTATCAAAAGCAATAATGGT+TGG + chr8_1:71240204-71240223 None:intergenic 30.0%
GACCTTAATTTATACCTTTG+GGG - chr8_1:71240332-71240351 Msa1211510:CDS 30.0%
! TTCCCCAAAGGTATAAATTA+AGG + chr8_1:71240337-71240356 None:intergenic 30.0%
ATATTCAGAAGGAAACGTAT+GGG - chr8_1:71240499-71240518 Msa1211510:CDS 30.0%
! AAGGCATCAGATAAACAATA+AGG + chr8_1:71240714-71240733 None:intergenic 30.0%
AGAATGTTTATGTTGTGTTG+TGG - chr8_1:71240984-71241003 Msa1211510:CDS 30.0%
! TACTTTACATGAAGAAGCAT+TGG - chr8_1:71241032-71241051 Msa1211510:CDS 30.0%
CTATCAAAAGCAATAATGGT+TGG + chr8_1:71240204-71240223 None:intergenic 30.0%
GACCTTAATTTATACCTTTG+GGG - chr8_1:71240332-71240351 Msa1211510:CDS 30.0%
! TTCCCCAAAGGTATAAATTA+AGG + chr8_1:71240337-71240356 None:intergenic 30.0%
ATATTCAGAAGGAAACGTAT+GGG - chr8_1:71240499-71240518 Msa1211510:CDS 30.0%
! AAGGCATCAGATAAACAATA+AGG + chr8_1:71240714-71240733 None:intergenic 30.0%
AGAATGTTTATGTTGTGTTG+TGG - chr8_1:71240984-71241003 Msa1211510:CDS 30.0%
! TACTTTACATGAAGAAGCAT+TGG - chr8_1:71241032-71241051 Msa1211510:CDS 30.0%
ACAATCATAGGTTCATGCAA+TGG - chr8_1:71240105-71240124 Msa1211510:CDS 35.0%
CAATCATAGGTTCATGCAAT+GGG - chr8_1:71240106-71240125 Msa1211510:CDS 35.0%
AATAATGGTTGGAGATGGTT+TGG + chr8_1:71240193-71240212 None:intergenic 35.0%
AAAGCAATAATGGTTGGAGA+TGG + chr8_1:71240198-71240217 None:intergenic 35.0%
! ATACCTTTGGGGAAAAAGAT+TGG - chr8_1:71240343-71240362 Msa1211510:CDS 35.0%
TTGTGAGCGGCAATTTAAAT+TGG - chr8_1:71240430-71240449 Msa1211510:CDS 35.0%
GATATTCAGAAGGAAACGTA+TGG - chr8_1:71240498-71240517 Msa1211510:CDS 35.0%
TATTCAGAAGGAAACGTATG+GGG - chr8_1:71240500-71240519 Msa1211510:CDS 35.0%
TTCTTGTCACGATAATCTTG+AGG + chr8_1:71240537-71240556 None:intergenic 35.0%
GTGATGTTAACTTATCCTGT+GGG + chr8_1:71240686-71240705 None:intergenic 35.0%
TCAGATAAACAATAAGGACC+AGG + chr8_1:71240708-71240727 None:intergenic 35.0%
! GCCTTGTTCATTTCAGAATA+CGG - chr8_1:71240729-71240748 Msa1211510:CDS 35.0%
!! TCCGTATTCTGAAATGAACA+AGG + chr8_1:71240733-71240752 None:intergenic 35.0%
ACATATTTACAACGAGAGTC+TGG - chr8_1:71240863-71240882 Msa1211510:CDS 35.0%
ACAATCATAGGTTCATGCAA+TGG - chr8_1:71240105-71240124 Msa1211510:CDS 35.0%
CAATCATAGGTTCATGCAAT+GGG - chr8_1:71240106-71240125 Msa1211510:CDS 35.0%
AATAATGGTTGGAGATGGTT+TGG + chr8_1:71240193-71240212 None:intergenic 35.0%
AAAGCAATAATGGTTGGAGA+TGG + chr8_1:71240198-71240217 None:intergenic 35.0%
! ATACCTTTGGGGAAAAAGAT+TGG - chr8_1:71240343-71240362 Msa1211510:CDS 35.0%
TTGTGAGCGGCAATTTAAAT+TGG - chr8_1:71240430-71240449 Msa1211510:CDS 35.0%
GATATTCAGAAGGAAACGTA+TGG - chr8_1:71240498-71240517 Msa1211510:CDS 35.0%
TATTCAGAAGGAAACGTATG+GGG - chr8_1:71240500-71240519 Msa1211510:CDS 35.0%
TTCTTGTCACGATAATCTTG+AGG + chr8_1:71240537-71240556 None:intergenic 35.0%
GTGATGTTAACTTATCCTGT+GGG + chr8_1:71240686-71240705 None:intergenic 35.0%
TCAGATAAACAATAAGGACC+AGG + chr8_1:71240708-71240727 None:intergenic 35.0%
! GCCTTGTTCATTTCAGAATA+CGG - chr8_1:71240729-71240748 Msa1211510:CDS 35.0%
!! TCCGTATTCTGAAATGAACA+AGG + chr8_1:71240733-71240752 None:intergenic 35.0%
ACATATTTACAACGAGAGTC+TGG - chr8_1:71240863-71240882 Msa1211510:CDS 35.0%
AACAAGAGGTTCCTATATCG+TGG - chr8_1:71240231-71240250 Msa1211510:intron 40.0%
GCTATGATCAAGTTAACGAC+AGG - chr8_1:71240259-71240278 Msa1211510:intron 40.0%
TCAAGTTAACGACAGGTACA+AGG - chr8_1:71240266-71240285 Msa1211510:intron 40.0%
! AGCAATTTTGCACAACTGCT+AGG + chr8_1:71240293-71240312 None:intergenic 40.0%
! TGTCCAATCTTTTTCCCCAA+AGG + chr8_1:71240349-71240368 None:intergenic 40.0%
! ACAAAACTCATTGGGTTGTG+TGG - chr8_1:71240610-71240629 Msa1211510:CDS 40.0%
GTGTGGATGATGAAAGAGTA+TGG - chr8_1:71240627-71240646 Msa1211510:CDS 40.0%
AGTATGGAGTTGTTGAGTCA+TGG - chr8_1:71240643-71240662 Msa1211510:CDS 40.0%
TAAACTGATGATCATCCCAC+AGG - chr8_1:71240668-71240687 Msa1211510:CDS 40.0%
GGTGATGTTAACTTATCCTG+TGG + chr8_1:71240687-71240706 None:intergenic 40.0%
CAGGATAAGTTAACATCACC+TGG - chr8_1:71240687-71240706 Msa1211510:CDS 40.0%
AACAAGAGGTTCCTATATCG+TGG - chr8_1:71240231-71240250 Msa1211510:intron 40.0%
GCTATGATCAAGTTAACGAC+AGG - chr8_1:71240259-71240278 Msa1211510:intron 40.0%
TCAAGTTAACGACAGGTACA+AGG - chr8_1:71240266-71240285 Msa1211510:intron 40.0%
! AGCAATTTTGCACAACTGCT+AGG + chr8_1:71240293-71240312 None:intergenic 40.0%
! TGTCCAATCTTTTTCCCCAA+AGG + chr8_1:71240349-71240368 None:intergenic 40.0%
! ACAAAACTCATTGGGTTGTG+TGG - chr8_1:71240610-71240629 Msa1211510:CDS 40.0%
GTGTGGATGATGAAAGAGTA+TGG - chr8_1:71240627-71240646 Msa1211510:CDS 40.0%
AGTATGGAGTTGTTGAGTCA+TGG - chr8_1:71240643-71240662 Msa1211510:CDS 40.0%
TAAACTGATGATCATCCCAC+AGG - chr8_1:71240668-71240687 Msa1211510:CDS 40.0%
GGTGATGTTAACTTATCCTG+TGG + chr8_1:71240687-71240706 None:intergenic 40.0%
CAGGATAAGTTAACATCACC+TGG - chr8_1:71240687-71240706 Msa1211510:CDS 40.0%
AGGTTCCTATATCGTGGCTT+TGG - chr8_1:71240237-71240256 Msa1211510:intron 45.0%
CATAGCCAAAGCCACGATAT+AGG + chr8_1:71240245-71240264 None:intergenic 45.0%
AAAACTTCCCATGTGATCCG+CGG - chr8_1:71240376-71240395 Msa1211510:CDS 45.0%
! ACGCTGAGTTTAGAATGCTG+GGG + chr8_1:71240771-71240790 None:intergenic 45.0%
! GACGCTGAGTTTAGAATGCT+GGG + chr8_1:71240772-71240791 None:intergenic 45.0%
! AGACGCTGAGTTTAGAATGC+TGG + chr8_1:71240773-71240792 None:intergenic 45.0%
AGGTTCCTATATCGTGGCTT+TGG - chr8_1:71240237-71240256 Msa1211510:intron 45.0%
CATAGCCAAAGCCACGATAT+AGG + chr8_1:71240245-71240264 None:intergenic 45.0%
AAAACTTCCCATGTGATCCG+CGG - chr8_1:71240376-71240395 Msa1211510:CDS 45.0%
! ACGCTGAGTTTAGAATGCTG+GGG + chr8_1:71240771-71240790 None:intergenic 45.0%
! GACGCTGAGTTTAGAATGCT+GGG + chr8_1:71240772-71240791 None:intergenic 45.0%
! AGACGCTGAGTTTAGAATGC+TGG + chr8_1:71240773-71240792 None:intergenic 45.0%
GGGGTAGGGAAATTTGTGAG+CGG - chr8_1:71240417-71240436 Msa1211510:CDS 50.0%
AGAGTCTGGTATCACCACAC+TGG - chr8_1:71240877-71240896 Msa1211510:CDS 50.0%
GGGGTAGGGAAATTTGTGAG+CGG - chr8_1:71240417-71240436 Msa1211510:CDS 50.0%
AGAGTCTGGTATCACCACAC+TGG - chr8_1:71240877-71240896 Msa1211510:CDS 50.0%
GATCACACCGCGGATCACAT+GGG + chr8_1:71240386-71240405 None:intergenic 55.0%
GGTGTGATCCTGGTCGGTTA+GGG - chr8_1:71240397-71240416 Msa1211510:CDS 55.0%
GTGTGATCCTGGTCGGTTAG+GGG - chr8_1:71240398-71240417 Msa1211510:CDS 55.0%
ATCCTGGTCGGTTAGGGGTA+GGG - chr8_1:71240403-71240422 Msa1211510:CDS 55.0%
GATCACACCGCGGATCACAT+GGG + chr8_1:71240386-71240405 None:intergenic 55.0%
GGTGTGATCCTGGTCGGTTA+GGG - chr8_1:71240397-71240416 Msa1211510:CDS 55.0%
GTGTGATCCTGGTCGGTTAG+GGG - chr8_1:71240398-71240417 Msa1211510:CDS 55.0%
ATCCTGGTCGGTTAGGGGTA+GGG - chr8_1:71240403-71240422 Msa1211510:CDS 55.0%
GGATCACACCGCGGATCACA+TGG + chr8_1:71240387-71240406 None:intergenic 60.0%
TGTGATCCGCGGTGTGATCC+TGG - chr8_1:71240387-71240406 Msa1211510:CDS 60.0%
ATCCGCGGTGTGATCCTGGT+CGG - chr8_1:71240391-71240410 Msa1211510:CDS 60.0%
AACCGACCAGGATCACACCG+CGG + chr8_1:71240396-71240415 None:intergenic 60.0%
CGGTGTGATCCTGGTCGGTT+AGG - chr8_1:71240396-71240415 Msa1211510:CDS 60.0%
GATCCTGGTCGGTTAGGGGT+AGG - chr8_1:71240402-71240421 Msa1211510:CDS 60.0%
TTCCCTACCCCTAACCGACC+AGG + chr8_1:71240408-71240427 None:intergenic 60.0%
GGATCACACCGCGGATCACA+TGG + chr8_1:71240387-71240406 None:intergenic 60.0%
TGTGATCCGCGGTGTGATCC+TGG - chr8_1:71240387-71240406 Msa1211510:CDS 60.0%
ATCCGCGGTGTGATCCTGGT+CGG - chr8_1:71240391-71240410 Msa1211510:CDS 60.0%
AACCGACCAGGATCACACCG+CGG + chr8_1:71240396-71240415 None:intergenic 60.0%
CGGTGTGATCCTGGTCGGTT+AGG - chr8_1:71240396-71240415 Msa1211510:CDS 60.0%
GATCCTGGTCGGTTAGGGGT+AGG - chr8_1:71240402-71240421 Msa1211510:CDS 60.0%
TTCCCTACCCCTAACCGACC+AGG + chr8_1:71240408-71240427 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 71240102 71241083 71240102 ID=Msa1211510;Name=Msa1211510
chr8_1 mRNA 71240102 71241083 71240102 ID=Msa1211510-mRNA-1;Parent=Msa1211510;Name=Msa1211510-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|0.5|1|1|2|0|295
chr8_1 exon 71240301 71241083 71240301 ID=Msa1211510-mRNA-1:exon:23908;Parent=Msa1211510-mRNA-1
chr8_1 exon 71240102 71240206 71240102 ID=Msa1211510-mRNA-1:exon:23907;Parent=Msa1211510-mRNA-1
chr8_1 CDS 71240301 71241083 71240301 ID=Msa1211510-mRNA-1:cds;Parent=Msa1211510-mRNA-1
chr8_1 CDS 71240102 71240206 71240102 ID=Msa1211510-mRNA-1:cds;Parent=Msa1211510-mRNA-1
Gene Sequence

>Msa1211510

ATGACAATCATAGGTTCATGCAATGGGTTGCTTTGTTTTAGTGATTTCTCTAAATTTACTTTGTGGAATCCTTCTATCAAATTGAAATCCAAACCATCTCCAACCATTATTGCTTTTGATAGTTTTGATAACAAGAGGTTCCTATATCGTGGCTTTGGCTATGATCAAGTTAACGACAGGTACAAGGTCCTAGCAGTTGTGCAAAATTGCTATAATTTGGATGAAACTAAGACCTTAATTTATACCTTTGGGGAAAAAGATTGGACAACTATTCAAAACTTCCCATGTGATCCGCGGTGTGATCCTGGTCGGTTAGGGGTAGGGAAATTTGTGAGCGGCAATTTAAATTGGATAGTTAATAAAAATGCCTTTAGTAAAAAGGTGATAGTTTTCTTTGATATTCAGAAGGAAACGTATGGGGAGATGTCGCTGCCTCAAGATTATCGTGACAAGAATACTGTGTTGTACGTTTCAAGTAACCGTATTTACGTATCTTTTGATCATTCTAACAAAACTCATTGGGTTGTGTGGATGATGAAAGAGTATGGAGTTGTTGAGTCATGGACTAAACTGATGATCATCCCACAGGATAAGTTAACATCACCTGGTCCTTATTGTTTATCTGATGCCTTGTTCATTTCAGAATACGGAGTTCTCTTTATGAGACCCCAGCATTCTAAACTCAGCGTCTATAACTTAAATAATAATGATGGTGGCTTAGATTATTGTACTACAATTTCTGGTCAATTTGCACGTCATCTACATATTTACAACGAGAGTCTGAGGAAAGAATGTTTATGTTGTGTTGTGGTAGAATATCATATTAGTTCTGCTTTTACTTTACATGAAGAAGCATTGGACTTAACAATCTATTTTGCATTGCAGTAG
Protein sequence

>Msa1211510

MTIIGSCNGLLCFSDFSKFTLWNPSIKLKSKPSPTIIAFDSFDNKRFLYRGFGYDQVNDRYKVLAVVQNCYNLDETKTLIYTFGEKDWTTIQNFPCDPRCDPGRLGVGKFVSGNLNWIVNKNAFSKKVIVFFDIQKETYGEMSLPQDYRDKNTVLYVSSNRIYVSFDHSNKTHWVVWMMKEYGVVESWTKLMIIPQDKLTSPGPYCLSDALFISEYGVLFMRPQHSKLSVYNLNNNDGGLDYCTTISGQFARHLHIYNESLRKECLCCVVVEYHISSAFTLHEEALDLTIYFALQ*