AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1340030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1340030 MtrunA17_Chr7g0276681 99.267 546 4 0 1 546 1 546 0.0 1115
Msa1340030 MtrunA17_Chr2g0327711 56.848 533 208 6 32 546 16 544 0.0 568
Msa1340030 MtrunA17_Chr4g0030551 56.038 530 220 7 30 546 17 546 0.0 547
Msa1340030 MtrunA17_Chr7g0263421 54.598 522 222 7 36 546 3 520 0.0 523
Msa1340030 MtrunA17_Chr1g0212971 45.604 546 254 7 31 546 61 593 3.17e-142 423
Msa1340030 MtrunA17_Chr1g0161231 44.015 518 262 8 52 546 19 531 4.03e-136 405
Msa1340030 MtrunA17_Chr1g0161231 32.778 180 116 3 48 227 96 270 2.62e-13 72.4
Msa1340030 MtrunA17_Chr8g0391711 44.330 485 250 8 77 546 59 538 3.46e-129 387
Msa1340030 MtrunA17_Chr8g0391711 32.222 180 117 3 48 227 103 277 3.64e-13 72.0
Msa1340030 MtrunA17_Chr7g0263471 40.968 537 286 4 31 546 56 582 5.30e-117 358
Msa1340030 MtrunA17_Chr2g0331201 27.237 503 288 10 44 478 71 563 1.92e-40 155
Msa1340030 MtrunA17_Chr2g0331201 30.275 218 151 1 83 300 38 254 5.90e-15 77.8
Msa1340030 MtrunA17_Chr2g0331191 25.779 578 341 16 41 544 68 631 2.76e-39 152
Msa1340030 MtrunA17_Chr2g0331191 32.609 230 153 2 84 312 39 267 5.26e-17 84.3
Msa1340030 MtrunA17_Chr1g0178581 28.125 288 171 7 119 393 47 311 4.76e-22 99.0
Msa1340030 MtrunA17_Chr8g0361991 24.719 356 211 7 119 438 46 380 4.95e-22 99.0
Msa1340030 MtrunA17_Chr8g0353311 27.273 308 183 6 100 393 36 316 8.37e-22 98.2
Msa1340030 MtrunA17_Chr8g0370361 28.571 287 171 7 119 393 46 310 2.02e-21 97.1
Msa1340030 MtrunA17_Chr7g0233331 23.659 410 256 11 85 466 9 389 1.71e-20 94.0
Msa1340030 MtrunA17_Chr3g0136651 23.670 376 230 10 119 475 40 377 1.75e-20 94.0
Msa1340030 MtrunA17_Chr3g0122941 28.862 246 145 7 86 312 162 396 5.84e-20 93.6
Msa1340030 MtrunA17_Chr5g0439351 25.577 477 255 17 55 486 264 685 3.06e-19 91.7
Msa1340030 MtrunA17_Chr3g0083331 26.159 302 170 7 119 393 45 320 2.05e-18 87.8
Msa1340030 MtrunA17_Chr8g0367671 25.939 293 181 5 119 397 47 317 2.35e-18 87.8
Msa1340030 MtrunA17_Chr8g0376971 29.167 288 168 8 40 295 99 382 3.15e-18 88.2
Msa1340030 MtrunA17_Chr7g0221531 28.959 221 141 3 119 327 44 260 6.53e-18 86.3
Msa1340030 MtrunA17_Chr8g0369921 26.872 227 150 3 119 333 45 267 1.61e-17 85.1
Msa1340030 MtrunA17_Chr8g0364031 29.130 230 140 3 119 336 45 263 5.40e-17 83.6
Msa1340030 MtrunA17_Chr2g0328031 29.661 236 125 8 85 310 15 219 5.66e-17 83.6
Msa1340030 MtrunA17_Chr6g0461061 30.830 253 150 5 78 310 207 454 2.26e-16 82.0
Msa1340030 MtrunA17_Chr6g0461061 32.065 184 103 7 41 224 308 469 1.21e-11 67.4
Msa1340030 MtrunA17_Chr6g0458951 29.582 311 177 10 17 291 75 379 2.61e-16 82.4
Msa1340030 MtrunA17_Chr7g0262731 30.924 249 140 7 119 340 44 287 1.27e-15 80.1
Msa1340030 MtrunA17_Chr7g0262731 28.571 196 126 4 112 297 5 196 3.38e-12 68.9
Msa1340030 MtrunA17_Chr5g0439361 23.919 393 237 12 131 486 1 368 1.29e-15 79.3
Msa1340030 MtrunA17_Chr5g0439161 25.000 448 284 11 78 486 207 641 1.31e-15 80.1
Msa1340030 MtrunA17_Chr5g0439161 26.708 322 169 14 40 302 86 399 2.13e-13 73.2
Msa1340030 MtrunA17_Chr8g0368621 23.345 287 186 4 119 393 42 306 6.86e-15 75.9
Msa1340030 MtrunA17_Chr4g0031491 31.034 232 138 7 82 296 13 239 7.40e-15 77.0
Msa1340030 MtrunA17_Chr5g0418551 38.621 145 82 6 181 320 50 192 9.30e-15 74.3
Msa1340030 MtrunA17_Chr5g0418551 37.143 140 81 5 154 290 58 193 9.84e-15 74.3
Msa1340030 MtrunA17_Chr5g0418551 31.868 182 117 6 77 256 50 226 3.63e-13 69.7
Msa1340030 MtrunA17_Chr8g0354071 23.873 377 226 11 127 472 2 348 1.10e-14 75.9
Msa1340030 MtrunA17_Chr3g0093531 24.403 377 224 12 127 472 2 348 3.05e-14 74.7
Msa1340030 MtrunA17_Chr8g0361891 31.532 222 116 10 123 313 139 355 1.52e-13 72.4
Msa1340030 MtrunA17_Chr2g0293861 31.214 173 108 6 130 293 10 180 2.69e-13 69.3
Msa1340030 MtrunA17_Chr7g0262761 30.380 158 99 3 119 266 47 203 8.76e-13 67.8
Msa1340030 MtrunA17_Chr1g0196261 31.122 196 116 6 103 297 240 417 3.65e-12 68.6
Msa1340030 MtrunA17_Chr5g0409271 35.366 164 97 5 120 283 15 169 3.85e-12 67.0
Msa1340030 MtrunA17_Chr2g0297701 22.892 498 277 16 43 495 114 549 9.00e-12 67.8
Msa1340030 MtrunA17_Chr1g0211241 29.474 190 131 3 121 310 140 326 2.67e-11 66.2
Msa1340030 MtrunA17_Chr4g0010051 31.220 205 115 8 110 295 47 244 6.37e-11 64.7
Msa1340030 MtrunA17_Chr4g0049351 32.308 130 85 3 147 275 120 247 8.14e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1340030 AT2G31820.1 74.234 555 133 5 1 546 109 662 0.0 825
Msa1340030 AT1G05640.1 71.199 559 148 6 1 546 69 627 0.0 793
Msa1340030 AT5G60070.1 56.711 529 208 8 35 546 24 548 0.0 558
Msa1340030 AT1G07710.2 57.170 530 212 5 31 546 15 543 0.0 548
Msa1340030 AT1G07710.1 57.170 530 212 5 31 546 15 543 0.0 548
Msa1340030 AT5G02620.4 50.287 523 242 6 35 546 9 524 1.54e-162 473
Msa1340030 AT5G02620.1 50.287 523 242 6 35 546 9 524 1.54e-162 473
Msa1340030 AT5G02620.3 50.287 523 242 6 35 546 9 524 1.54e-162 473
Msa1340030 AT5G02620.5 48.352 546 241 7 35 546 9 547 1.99e-157 461
Msa1340030 AT5G02620.2 48.352 546 241 7 35 546 9 547 1.99e-157 461
Msa1340030 AT3G12360.2 42.329 541 275 7 31 546 50 578 4.88e-127 384
Msa1340030 AT3G12360.1 42.329 541 275 7 31 546 62 590 5.27e-127 384
Msa1340030 AT2G01680.1 42.708 480 254 7 50 513 17 491 1.75e-123 373
Msa1340030 AT2G01680.1 28.796 191 131 2 47 237 98 283 8.50e-12 68.2
Msa1340030 AT3G09550.2 41.651 545 276 9 31 546 83 614 1.70e-119 365
Msa1340030 AT3G09550.1 41.651 545 276 9 31 546 76 607 1.74e-119 365
Msa1340030 AT3G09550.3 41.651 545 276 9 31 546 76 607 1.74e-119 365
Msa1340030 AT5G54710.1 28.797 507 326 13 43 534 102 588 8.30e-44 164
Msa1340030 AT5G54710.2 28.797 507 326 13 43 534 147 633 1.78e-43 164
Msa1340030 AT5G54710.2 25.000 312 179 11 43 317 18 311 9.22e-13 71.2
Msa1340030 AT1G34050.1 27.122 483 308 12 43 513 88 538 3.57e-38 148
Msa1340030 AT2G24600.3 25.773 485 319 15 43 502 71 539 1.48e-35 141
Msa1340030 AT2G24600.4 25.773 485 319 15 43 502 71 539 1.48e-35 141
Msa1340030 AT1G10340.1 25.470 479 313 13 46 498 74 534 2.34e-35 140
Msa1340030 AT1G10340.2 24.950 501 316 13 47 498 41 530 9.53e-35 138
Msa1340030 AT4G03500.1 26.539 471 317 9 43 493 136 597 3.21e-33 134
Msa1340030 AT4G03500.1 26.840 231 125 6 110 297 96 325 3.29e-12 69.7
Msa1340030 AT4G03500.2 26.539 471 317 9 43 493 113 574 3.53e-33 134
Msa1340030 AT4G03500.2 26.840 231 125 6 110 297 73 302 3.41e-12 69.7
Msa1340030 AT4G03500.3 26.539 471 317 9 43 493 113 574 3.53e-33 134
Msa1340030 AT4G03500.3 26.840 231 125 6 110 297 73 302 3.41e-12 69.7
Msa1340030 AT5G50140.1 26.389 504 303 20 33 498 17 490 1.94e-29 122
Msa1340030 AT1G03670.1 24.520 469 288 9 41 478 144 577 1.78e-27 117
Msa1340030 AT1G03670.1 29.293 198 133 3 108 298 64 261 1.10e-14 77.4
Msa1340030 AT4G03480.2 28.191 376 221 9 78 435 309 653 1.88e-26 114
Msa1340030 AT4G03480.2 24.333 300 187 8 31 297 140 432 1.77e-13 73.6
Msa1340030 AT4G03480.1 28.191 376 221 9 78 435 312 656 2.00e-26 114
Msa1340030 AT4G03480.1 24.092 303 187 8 31 297 140 435 4.00e-13 72.8
Msa1340030 AT4G03470.1 26.494 502 311 14 43 532 201 656 8.12e-26 112
Msa1340030 AT4G03460.2 25.659 417 280 10 43 435 82 492 6.75e-25 109
Msa1340030 AT4G03460.1 25.659 417 280 10 43 435 114 524 8.90e-25 108
Msa1340030 AT4G03460.1 26.316 266 170 8 50 297 53 310 2.36e-13 73.2
Msa1340030 AT4G14390.2 25.370 540 318 13 43 512 113 637 1.96e-24 108
Msa1340030 AT4G14390.4 25.370 540 318 13 43 512 132 656 2.31e-24 107
Msa1340030 AT5G54700.2 26.718 393 203 14 170 544 17 342 4.30e-24 103
Msa1340030 AT4G03490.4 25.536 466 301 13 43 501 144 570 4.31e-24 107
Msa1340030 AT4G03490.3 25.536 466 301 13 43 501 144 570 5.41e-24 107
Msa1340030 AT4G03490.5 25.536 466 301 13 43 501 134 560 5.94e-24 106
Msa1340030 AT4G14390.1 25.508 541 317 14 43 512 132 657 1.68e-23 105
Msa1340030 AT4G10720.2 25.281 356 226 8 119 455 40 374 2.40e-22 100
Msa1340030 AT4G03490.2 22.338 479 316 11 42 501 71 512 3.09e-22 101
Msa1340030 AT4G03490.1 22.338 479 316 11 42 501 81 522 4.08e-22 100
Msa1340030 AT4G10720.1 27.027 296 182 5 119 398 40 317 9.89e-21 95.5
Msa1340030 AT4G05040.3 27.053 414 238 13 41 435 195 563 1.31e-20 95.9
Msa1340030 AT4G05040.3 26.214 206 129 3 74 278 74 257 1.37e-11 67.4
Msa1340030 AT4G05040.2 27.053 414 238 13 41 435 195 563 1.31e-20 95.9
Msa1340030 AT4G05040.2 26.214 206 129 3 74 278 74 257 1.37e-11 67.4
Msa1340030 AT4G05040.5 27.053 414 238 13 41 435 195 563 1.31e-20 95.9
Msa1340030 AT4G05040.5 26.214 206 129 3 74 278 74 257 1.37e-11 67.4
Msa1340030 AT4G05040.4 27.053 414 238 13 41 435 195 563 1.31e-20 95.9
Msa1340030 AT4G05040.4 26.214 206 129 3 74 278 74 257 1.37e-11 67.4
Msa1340030 AT4G05040.1 27.053 414 238 13 41 435 195 563 1.31e-20 95.9
Msa1340030 AT4G05040.1 26.214 206 129 3 74 278 74 257 1.37e-11 67.4
Msa1340030 AT4G05040.6 27.053 414 238 13 41 435 195 563 1.31e-20 95.9
Msa1340030 AT4G05040.6 26.214 206 129 3 74 278 74 257 1.37e-11 67.4
Msa1340030 AT4G05040.7 27.053 414 238 13 41 435 195 563 1.31e-20 95.9
Msa1340030 AT4G05040.7 26.214 206 129 3 74 278 74 257 1.37e-11 67.4
Msa1340030 AT4G03450.2 26.923 494 285 19 42 485 104 571 2.07e-20 95.5
Msa1340030 AT4G03450.1 27.255 499 277 20 42 485 104 571 2.55e-20 95.1
Msa1340030 AT2G24600.2 24.839 467 284 16 43 485 71 494 6.76e-20 93.6
Msa1340030 AT2G24600.1 24.839 467 284 16 43 485 71 494 6.76e-20 93.6
Msa1340030 AT4G14400.1 25.490 459 295 10 69 512 205 631 1.06e-19 93.6
Msa1340030 AT4G03440.1 24.838 463 282 14 69 510 260 677 1.13e-19 93.6
Msa1340030 AT4G03440.1 25.085 295 193 9 31 302 108 397 3.99e-12 69.7
Msa1340030 AT4G03440.2 24.838 463 282 14 69 510 253 670 1.41e-19 93.2
Msa1340030 AT4G03440.2 25.085 295 193 9 31 302 101 390 4.64e-12 69.3
Msa1340030 AT4G03440.3 24.838 463 282 14 69 510 253 670 1.41e-19 93.2
Msa1340030 AT4G03440.3 25.085 295 193 9 31 302 101 390 4.64e-12 69.3
Msa1340030 AT4G14400.2 25.490 459 295 10 69 512 139 565 1.62e-19 92.8
Msa1340030 AT4G14400.3 25.490 459 295 10 69 512 139 565 1.62e-19 92.8
Msa1340030 AT3G01750.2 31.271 291 162 9 43 299 105 391 5.96e-19 90.9
Msa1340030 AT3G01750.1 31.271 291 162 9 43 299 105 391 5.96e-19 90.9
Msa1340030 AT5G15500.2 26.460 291 180 5 119 393 41 313 2.11e-17 85.5
Msa1340030 AT5G51160.1 25.846 325 197 10 147 438 44 357 4.96e-17 84.0
Msa1340030 AT1G14500.1 28.632 234 150 3 119 335 40 273 7.34e-16 80.5
Msa1340030 AT5G54700.1 25.434 346 190 12 181 497 34 340 7.46e-16 80.9
Msa1340030 AT3G04140.1 27.055 292 170 6 43 295 102 389 1.06e-15 80.9
Msa1340030 AT2G03430.1 38.571 140 80 5 181 316 43 180 5.39e-15 75.1
Msa1340030 AT2G03430.1 31.579 190 123 6 77 264 43 227 5.00e-13 69.3
Msa1340030 AT2G03430.1 39.437 142 75 6 154 290 51 186 3.09e-12 67.0
Msa1340030 AT4G14390.3 24.762 420 235 11 43 392 113 521 7.00e-15 77.8
Msa1340030 AT5G54620.1 28.205 234 153 3 117 335 38 271 9.09e-15 77.0
Msa1340030 AT5G54610.1 27.895 190 127 2 119 298 40 229 2.11e-14 75.9
Msa1340030 AT5G54610.1 28.638 213 137 5 68 267 22 232 4.14e-12 68.6
Msa1340030 AT1G14480.1 23.636 385 236 8 119 448 40 421 2.61e-14 75.9
Msa1340030 AT2G28840.1 32.487 197 100 5 120 310 50 219 4.55e-14 75.1
Msa1340030 AT3G04710.2 31.925 213 136 6 110 320 49 254 1.85e-12 70.1
Msa1340030 AT4G19150.1 30.460 174 84 3 120 293 20 156 2.53e-12 67.4
Msa1340030 AT3G04710.1 31.683 202 130 5 110 310 49 243 3.48e-11 65.9
Msa1340030 AT3G04710.3 31.683 202 130 5 110 310 273 467 3.96e-11 66.2
Msa1340030 AT5G57740.1 30.374 214 110 8 119 296 54 264 4.25e-11 65.9

Find 142 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGGCATTATTCATTTCTT+TGG 0.247268 tig0003655:-13748 Msa1340030:CDS
GAAGGGATCATAACCATTTC+TGG 0.256676 tig0003655:+17768 None:intergenic
AGGATCCAAGCACCGGATTT+AGG 0.271641 tig0003655:-17400 Msa1340030:CDS
TCCTGATGCTTAATATAATA+TGG 0.271681 tig0003655:+18481 None:intergenic
TGACGTCGTGAATCTCCTTT+TGG 0.292532 tig0003655:-17528 Msa1340030:CDS
TTTAGTTGCTTTGCTGCATT+TGG 0.317628 tig0003655:+14062 None:intergenic
CCTTCACTCTGCGGCTAGAA+TGG 0.320595 tig0003655:-17456 Msa1340030:CDS
CAAGAGGATGTACGCACTTT+AGG 0.320769 tig0003655:-13400 Msa1340030:exon
TTCTGAGAACGGACATGATT+TGG 0.325398 tig0003655:-17842 Msa1340030:CDS
CAACATCAATGCTACTAATA+AGG 0.328056 tig0003655:-14189 Msa1340030:CDS
AGCCCCAGCATCCCTCATTA+TGG 0.329160 tig0003655:+14112 None:intergenic
TGCGGCTAGAATGGGGCATT+TGG 0.335820 tig0003655:-17447 Msa1340030:CDS
CTTCACTCTGCGGCTAGAAT+GGG 0.352049 tig0003655:-17455 Msa1340030:CDS
GACAGTCTTACCATTGTTCC+TGG 0.365757 tig0003655:+17478 None:intergenic
TTAAATCTAGAGGATAATAA+AGG 0.376597 tig0003655:-17284 Msa1340030:CDS
GCTTCTATTGTCGCCAGAAA+TGG 0.381329 tig0003655:-17781 Msa1340030:CDS
TTCATTTAGCTGCTCGGGCT+GGG 0.381699 tig0003655:-17966 Msa1340030:CDS
GGAGAGGCAGCTGAGCTTCA+TGG 0.386167 tig0003655:-18043 Msa1340030:CDS
TATGTTGAAGAGAAAGTAAA+TGG 0.386691 tig0003655:-13837 Msa1340030:CDS
CTGCATTTGGAGGTTTCCCT+TGG 0.389760 tig0003655:+14075 None:intergenic
GCTTGGATCCTTGCTTAGTA+AGG 0.394921 tig0003655:+17412 None:intergenic
TTCTCTCACTTACGTGGTAG+TGG 0.396214 tig0003655:-13607 Msa1340030:CDS
TCTGGACCCTCATGCCCGTC+TGG 0.398040 tig0003655:+13985 None:intergenic
CTTCCATGTTGCTGCAAAGC+AGG 0.398447 tig0003655:-17749 Msa1340030:CDS
CAGAGGTAATCGCATTGTTC+AGG 0.401763 tig0003655:+13925 None:intergenic
GTCTCCATAATGAGGGATGC+TGG 0.403600 tig0003655:-14116 Msa1340030:CDS
TGCAAAGAAGGGCCGTAATC+AGG 0.408212 tig0003655:-17240 Msa1340030:intron
ATTCATTTAGCTGCTCGGGC+TGG 0.412041 tig0003655:-17967 Msa1340030:CDS
TACCGATTCATTTAGCTGCT+CGG 0.412349 tig0003655:-17972 Msa1340030:CDS
GCCATATTATATTAAGCATC+AGG 0.412682 tig0003655:-18482 Msa1340030:five_prime_UTR
GCTATATATGCTACAGTGAT+TGG 0.413428 tig0003655:-13564 Msa1340030:CDS
AGTTGTTGTGATTGAGCAAA+AGG 0.415505 tig0003655:-13703 Msa1340030:CDS
AGTTGCTTTGCTGCATTTGG+AGG 0.423178 tig0003655:+14065 None:intergenic
CTCATTATGGAGACAAGATC+TGG 0.425108 tig0003655:+14125 None:intergenic
GATCTAAGCTATGATTTAAA+CGG 0.432410 tig0003655:-13346 Msa1340030:three_prime_UTR
TTCTCAGAAGCGACGTAAAG+AGG 0.435647 tig0003655:+17856 None:intergenic
AGATTTAAAACTGCTCGGTC+AGG 0.438182 tig0003655:+17299 None:intergenic
ACCGATTCATTTAGCTGCTC+GGG 0.450097 tig0003655:-17971 Msa1340030:CDS
TCTCCATAATGAGGGATGCT+GGG 0.451849 tig0003655:-14115 Msa1340030:CDS
TTTCTCTTCAACATATTGAC+CGG 0.455311 tig0003655:+13845 None:intergenic
CATTGTTCAGGCCACTTATG+TGG 0.455464 tig0003655:+13937 None:intergenic
GTTGAAAGGGAAGCTAGAAA+TGG 0.457389 tig0003655:-18577 Msa1340030:five_prime_UTR
ATTGCATATTGCTGCAAAGA+AGG 0.465601 tig0003655:-17252 Msa1340030:CDS
CATGGAGAAAGAACGGCTTT+CGG 0.467112 tig0003655:+13461 None:intergenic
CATTAACAAGCTCATGTGGC+TGG 0.467378 tig0003655:-13658 Msa1340030:CDS
ACAAGTCCTTTGCTGCCTCA+TGG 0.467607 tig0003655:+17908 None:intergenic
GCCCGAGCAGCTAAATGAAT+CGG 0.469940 tig0003655:+17970 None:intergenic
TGAGGCAGCAAAGGACTTGT+TGG 0.470727 tig0003655:-17905 Msa1340030:CDS
CTGGCGTGTCTGTTGGAGTT+GGG 0.471422 tig0003655:+14004 None:intergenic
TCTGTAGTCATGGCCAAGTT+GGG 0.474009 tig0003655:+17599 None:intergenic
TAGCGAGATACTCAAATACT+TGG 0.475702 tig0003655:-17815 Msa1340030:CDS
TCTCAGAAGCGACGTAAAGA+GGG 0.479972 tig0003655:+17857 None:intergenic
GCAGCCATCTTCACTGTCCC+CGG 0.481349 tig0003655:-13864 Msa1340030:CDS
GAGAGGCAGCTGAGCTTCAT+GGG 0.489122 tig0003655:-18042 Msa1340030:CDS
ATCTGTAGTCATGGCCAAGT+TGG 0.490000 tig0003655:+17598 None:intergenic
TGAAGGCAATGGAAATGAAA+AGG 0.490893 tig0003655:+13631 None:intergenic
TCAGTCCTAAATCCGGTGCT+TGG 0.504143 tig0003655:+17395 None:intergenic
TCTGGCGTGTCTGTTGGAGT+TGG 0.506059 tig0003655:+14003 None:intergenic
TTTCTTATCAGTCCTAAATC+CGG 0.506072 tig0003655:+17388 None:intergenic
CACTACACATGGCTGTGAAA+GGG 0.507134 tig0003655:-17355 Msa1340030:CDS
TAAAAGCAAACACCTGATTA+CGG 0.507872 tig0003655:+17228 None:intergenic
GCTGCAAAGCAGGGTCATCT+TGG 0.508636 tig0003655:-17739 Msa1340030:intron
TTGATAATGCTCTCTACAAT+CGG 0.508727 tig0003655:-13537 Msa1340030:CDS
CACGACGTCAATGTGACCTT+GGG 0.509692 tig0003655:+17541 None:intergenic
CAGATCTTGTCTCCATAATG+AGG 0.509836 tig0003655:-14124 Msa1340030:CDS
ATTTGGAGGTTTCCCTTGGT+CGG 0.511494 tig0003655:+14079 None:intergenic
CTTTACGTCGCTTCTGAGAA+CGG 0.514029 tig0003655:-17853 Msa1340030:CDS
TGTGTGTAAAGCAGTTGAAT+TGG 0.520334 tig0003655:+17571 None:intergenic
CTGAAGAAACTCCACATAAG+TGG 0.520816 tig0003655:-13948 Msa1340030:CDS
CTCCAACAGACACGCCAGAC+GGG 0.522130 tig0003655:-13999 Msa1340030:CDS
GGTAAGTCGCCACGTTTCCC+AGG 0.525989 tig0003655:+17991 None:intergenic
CCTCTAGATTTAAAACTGCT+CGG 0.526757 tig0003655:+17294 None:intergenic
ATTCATTTCTTTGGCTGTCG+TGG 0.528156 tig0003655:-13739 Msa1340030:CDS
GCACTACACATGGCTGTGAA+AGG 0.531620 tig0003655:-17356 Msa1340030:CDS
ATTCACCGTTCAAAATCTCC+TGG 0.533489 tig0003655:+13424 None:intergenic
AGTGAGGGATAATGTTGAAA+GGG 0.533570 tig0003655:-18590 Msa1340030:five_prime_UTR
GATAGATGAGACAAAATTGA+GGG 0.537415 tig0003655:-13484 Msa1340030:CDS
ATCAATGCTACTAATAAGGC+GGG 0.540259 tig0003655:-14185 Msa1340030:CDS
CACGTAAGTGAGAGAAATGA+AGG 0.544789 tig0003655:+13614 None:intergenic
GGTTTGAATCTGATTCCAAA+AGG 0.544875 tig0003655:+17513 None:intergenic
TTGACCGGGGACAGTGAAGA+TGG 0.544944 tig0003655:+13860 None:intergenic
AAGTGAGGGATAATGTTGAA+AGG 0.546380 tig0003655:-18591 Msa1340030:five_prime_UTR
TCACGACGTCAATGTGACCT+TGG 0.547725 tig0003655:+17540 None:intergenic
AAGAAGAGCAAGGAATCACC+TGG 0.548629 tig0003655:-18009 Msa1340030:CDS
CTGCTTTGCAGCAACATGGA+AGG 0.550006 tig0003655:+17750 None:intergenic
TTGCATATTGCTGCAAAGAA+GGG 0.553144 tig0003655:-17251 Msa1340030:CDS
AAGTGAGAGGAAGAAGAGCA+AGG 0.553626 tig0003655:-18019 Msa1340030:CDS
TCTCTCACTTACGTGGTAGT+GGG 0.555983 tig0003655:-13606 Msa1340030:CDS
TTCTCTTCAACATATTGACC+GGG 0.561606 tig0003655:+13846 None:intergenic
AACAGCAACAACAGTAGCAG+AGG 0.562112 tig0003655:+13908 None:intergenic
TGTGAAAGCCTTACTAAGCA+AGG 0.562203 tig0003655:-17420 Msa1340030:CDS
TGCTTTGCAGCAACATGGAA+GGG 0.565820 tig0003655:+17751 None:intergenic
TTCCATGTTGCTGCAAAGCA+GGG 0.566001 tig0003655:-17748 Msa1340030:CDS
CCAAAGAAATGAATAATGCC+AGG 0.566227 tig0003655:+13748 None:intergenic
TGGAGGTTTCCCTTGGTCGG+TGG 0.569501 tig0003655:+14082 None:intergenic
AGTGAGAGAAATGAAGGCAA+TGG 0.571730 tig0003655:+13620 None:intergenic
CATTTCTTTGGCTGTCGTGG+TGG 0.572639 tig0003655:-13736 Msa1340030:CDS
GACCCTGCTTTGCAGCAACA+TGG 0.573006 tig0003655:+17746 None:intergenic
TTGTCATTAACAAGCTCATG+TGG 0.574156 tig0003655:-13662 Msa1340030:CDS
CCATTCTAGCCGCAGAGTGA+AGG 0.575265 tig0003655:+17456 None:intergenic
CTAAGCAAGGATCCAAGCAC+CGG 0.576042 tig0003655:-17407 Msa1340030:CDS
TCAAAACCATGAGGCAGCAA+AGG 0.578528 tig0003655:-17914 Msa1340030:CDS
CTCCATAATGAGGGATGCTG+GGG 0.582844 tig0003655:-14114 Msa1340030:CDS
AGACACGCCAGACGGGCATG+AGG 0.585010 tig0003655:-13992 Msa1340030:CDS
TTCACTCTGCGGCTAGAATG+GGG 0.586636 tig0003655:-17454 Msa1340030:CDS
GCTGTTAATTCCACCGACCA+AGG 0.589761 tig0003655:-14092 Msa1340030:CDS
CTGGTCTGATGTATGCGACA+TGG 0.589809 tig0003655:+13443 None:intergenic
ATTGGACAAATCTGTAGTCA+TGG 0.593370 tig0003655:+17589 None:intergenic
GGATAGATGAGACAAAATTG+AGG 0.593412 tig0003655:-13485 Msa1340030:CDS
TTGGCAAAGCAGAACCTCGA+GGG 0.594567 tig0003655:-17886 Msa1340030:CDS
AGGTCAAACTGCACTACACA+TGG 0.594858 tig0003655:-17366 Msa1340030:CDS
GAACATATATCTATCTACCT+TGG 0.598653 tig0003655:-18509 Msa1340030:five_prime_UTR
TCATAGCTTAGATCGTAGCT+TGG 0.599699 tig0003655:+13355 None:intergenic
CAGAATGACACAATAGCACA+TGG 0.602461 tig0003655:+13512 None:intergenic
GACACGCCAGACGGGCATGA+GGG 0.616315 tig0003655:-13991 Msa1340030:CDS
CTTCATTTCTCTCACTTACG+TGG 0.617532 tig0003655:-13613 Msa1340030:CDS
CATGTCGCATACATCAGACC+AGG 0.620062 tig0003655:-13442 Msa1340030:CDS
AGATCTTGTCTCCATAATGA+GGG 0.621157 tig0003655:-14123 Msa1340030:CDS
CTCAGAAGCGACGTAAAGAG+GGG 0.621468 tig0003655:+17858 None:intergenic
CTGTTAATTCCACCGACCAA+GGG 0.622584 tig0003655:-14091 Msa1340030:CDS
GGATTTAGGACTGATAAGAA+AGG 0.622915 tig0003655:-17386 Msa1340030:CDS
CCGCCGCTTGTTATCAACGG+AGG 0.624596 tig0003655:-14216 Msa1340030:CDS
ACTCCAACAGACACGCCAGA+CGG 0.625293 tig0003655:-14000 Msa1340030:CDS
TATGCGACATGGAGAAAGAA+CGG 0.627806 tig0003655:+13454 None:intergenic
TTACACACAGCTGCTACCCA+AGG 0.629783 tig0003655:-17557 Msa1340030:CDS
TACCCTCCGTTGATAACAAG+CGG 0.632686 tig0003655:+14213 None:intergenic
CATCAATGCTACTAATAAGG+CGG 0.636561 tig0003655:-14186 Msa1340030:CDS
TGAGCTTCATGGGAAGTGAG+AGG 0.638406 tig0003655:-18032 Msa1340030:CDS
TGTCCGCCGCTTGTTATCAA+CGG 0.646577 tig0003655:-14219 Msa1340030:CDS
AAGGAATCACCTGGGAAACG+TGG 0.653514 tig0003655:-18000 Msa1340030:CDS
AATATAATATGGCTCAACCA+AGG 0.661399 tig0003655:+18492 None:intergenic
TGGCAAAGCAGAACCTCGAG+GGG 0.666459 tig0003655:-17885 Msa1340030:CDS
GCTATTGTGTCATTCTGCAT+AGG 0.668692 tig0003655:-13506 Msa1340030:CDS
GCAACAGCAAGCATCAAAGA+CGG 0.680959 tig0003655:-18408 Msa1340030:intron
GTTGGCAAAGCAGAACCTCG+AGG 0.692209 tig0003655:-17887 Msa1340030:CDS
AGAAGAGCAAGGAATCACCT+GGG 0.695083 tig0003655:-18008 Msa1340030:CDS
TCTCTTCAACATATTGACCG+GGG 0.706481 tig0003655:+13847 None:intergenic
TAAGACTGTCCTTCACTCTG+CGG 0.709234 tig0003655:-17465 Msa1340030:CDS
GATACTACTTCAAAACCATG+AGG 0.726605 tig0003655:-17923 Msa1340030:CDS
GGCAAAGCAGAACCTCGAGG+GGG 0.735780 tig0003655:-17884 Msa1340030:CDS
CCTCCGTTGATAACAAGCGG+CGG 0.744744 tig0003655:+14216 None:intergenic
TAGTGGGATCACACTCACGA+TGG 0.748360 tig0003655:-13590 Msa1340030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATCGT+AGG - tig0003655:16265-16284 Msa1340030:intron 10.0%
!! ATTAATTCATTATTTATTGT+TGG - tig0003655:17353-17372 Msa1340030:CDS 10.0%
!!! TCTCAATAATTAGTTTATAA+AGG + tig0003655:14675-14694 None:intergenic 15.0%
!! TAACATAAGAGAAATATATA+GGG + tig0003655:15606-15625 None:intergenic 15.0%
!! ATAACATAAGAGAAATATAT+AGG + tig0003655:15607-15626 None:intergenic 15.0%
!!! AAACATAAGAATTTTAACTT+GGG - tig0003655:15775-15794 Msa1340030:intron 15.0%
!!! ATATTTTCATATAGCAATAA+TGG + tig0003655:15856-15875 None:intergenic 15.0%
!!! ATTATAATTCGTTTTATCTT+AGG - tig0003655:16303-16322 Msa1340030:intron 15.0%
!!! AATTGCATTCATATTTATTT+TGG - tig0003655:16357-16376 Msa1340030:intron 15.0%
!! TCAAATTATCATAATTCATA+TGG + tig0003655:17093-17112 None:intergenic 15.0%
!!! TTATTATGTTTTCTGTTGTT+GGG - tig0003655:13651-13670 Msa1340030:CDS 20.0%
!! AAAAACAATCTACAATACAA+TGG - tig0003655:13706-13725 Msa1340030:CDS 20.0%
!! TTAAATCTAGAGGATAATAA+AGG - tig0003655:14546-14565 Msa1340030:intron 20.0%
!!! TACAGTTATGCTTATATTTT+AGG + tig0003655:14802-14821 None:intergenic 20.0%
!! TATGTCTATAATAATGTCTT+CGG - tig0003655:15278-15297 Msa1340030:intron 20.0%
!! AACATAAGAGAAATATATAG+GGG + tig0003655:15605-15624 None:intergenic 20.0%
!! AACAAAATGAATAACAAAGA+GGG + tig0003655:15679-15698 None:intergenic 20.0%
!!! GAAACATAAGAATTTTAACT+TGG - tig0003655:15774-15793 Msa1340030:intron 20.0%
!!! TCATTTTTTCACTTTTAAGT+TGG - tig0003655:16443-16462 Msa1340030:intron 20.0%
!!! CCAAAAAAGTATATTAACAA+TGG + tig0003655:16584-16603 None:intergenic 20.0%
!!! CCATTGTTAATATACTTTTT+TGG - tig0003655:16581-16600 Msa1340030:intron 20.0%
!! CCAAAAAAAAAAAAAGACTT+AGG + tig0003655:16834-16853 None:intergenic 20.0%
!!! CCTAAGTCTTTTTTTTTTTT+TGG - tig0003655:16831-16850 Msa1340030:intron 20.0%
!!! GATTCATTAATGTTTTTCAT+GGG + tig0003655:17028-17047 None:intergenic 20.0%
!! AACATTAATGAATCCTTAAT+CGG - tig0003655:17034-17053 Msa1340030:intron 20.0%
!! TAAAAGAACAAAAAATGATG+TGG + tig0003655:17200-17219 None:intergenic 20.0%
!!! TTTTGTTCTTTTAATTAACC+AGG - tig0003655:17207-17226 Msa1340030:intron 20.0%
!! ATGAATTAATAAGTAAGCAA+AGG + tig0003655:17343-17362 None:intergenic 20.0%
!!! TTTCAATATTTATTCTGAAG+TGG - tig0003655:17570-17589 Msa1340030:CDS 20.0%
!! TATCAAACACAAAAAATATC+AGG + tig0003655:18061-18080 None:intergenic 20.0%
! TGAGATTATTGTAAAAAGTG+AGG - tig0003655:13224-13243 Msa1340030:three_prime_UTR 25.0%
! GAGATTATTGTAAAAAGTGA+GGG - tig0003655:13225-13244 Msa1340030:three_prime_UTR 25.0%
! TCCTGATGCTTAATATAATA+TGG + tig0003655:13352-13371 None:intergenic 25.0%
! ACTCAATTAATTAAGTGATC+TGG + tig0003655:13582-13601 None:intergenic 25.0%
!!! TAATAACTTTGATCGATTTG+CGG - tig0003655:13605-13624 Msa1340030:CDS 25.0%
!! CTTATTATGTTTTCTGTTGT+TGG - tig0003655:13650-13669 Msa1340030:CDS 25.0%
! ATAAGAACAAGTATTAGACA+TGG + tig0003655:14732-14751 None:intergenic 25.0%
! CATAACTGTAAGTCATATTA+TGG - tig0003655:14812-14831 Msa1340030:intron 25.0%
! AGTTTACAATGTAGAAAAGA+TGG - tig0003655:14852-14871 Msa1340030:intron 25.0%
! TAAAAAACCCATTGATCATT+GGG + tig0003655:15013-15032 None:intergenic 25.0%
! AAATTATGGGTTTCTTACAT+GGG + tig0003655:15085-15104 None:intergenic 25.0%
! TGGAATCAATAGAACAATTT+GGG - tig0003655:15116-15135 Msa1340030:intron 25.0%
! AGAAATCAGACTGATATTAA+AGG - tig0003655:15350-15369 Msa1340030:intron 25.0%
! AGAAACAACTATATAGAAGA+AGG - tig0003655:15415-15434 Msa1340030:intron 25.0%
! ACATAAGAGAAATATATAGG+GGG + tig0003655:15604-15623 None:intergenic 25.0%
! GAACAAAATGAATAACAAAG+AGG + tig0003655:15680-15699 None:intergenic 25.0%
! AAAAAAAAAAGACTTAGGAG+AGG + tig0003655:16829-16848 None:intergenic 25.0%
! TACATGAACAAAAAAAGTGA+TGG + tig0003655:16908-16927 None:intergenic 25.0%
!! TCAGTCTATTTTCTTTCTTA+TGG - tig0003655:16938-16957 Msa1340030:intron 25.0%
! TTCTTTCTTATGGCATTAAT+TGG - tig0003655:16948-16967 Msa1340030:intron 25.0%
!! GGATTCATTAATGTTTTTCA+TGG + tig0003655:17029-17048 None:intergenic 25.0%
!!! TCTTTTGAAGTTTGATTTCT+TGG - tig0003655:17060-17079 Msa1340030:intron 25.0%
! ATTAGTTAGTATCCTTACTT+TGG - tig0003655:17164-17183 Msa1340030:intron 25.0%
!! AAATTTTTCTGCAATGTCAA+GGG + tig0003655:17679-17698 None:intergenic 25.0%
! TATGTTGAAGAGAAAGTAAA+TGG - tig0003655:17993-18012 Msa1340030:CDS 25.0%
! GATCTAAGCTATGATTTAAA+CGG - tig0003655:18484-18503 Msa1340030:five_prime_UTR 25.0%
GAACATATATCTATCTACCT+TGG - tig0003655:13321-13340 Msa1340030:three_prime_UTR 30.0%
AATATAATATGGCTCAACCA+AGG + tig0003655:13341-13360 None:intergenic 30.0%
GCCATATTATATTAAGCATC+AGG - tig0003655:13348-13367 Msa1340030:three_prime_UTR 30.0%
!! GTTTATTATTTCTAGCTTGC+TGG - tig0003655:13535-13554 Msa1340030:CDS 30.0%
!!! CTGCAAGATTCTTTTTTTCT+CGG + tig0003655:14182-14201 None:intergenic 30.0%
AGAAAAAAAGAATCTTGCAG+AGG - tig0003655:14182-14201 Msa1340030:CDS 30.0%
TTTCTTATCAGTCCTAAATC+CGG + tig0003655:14445-14464 None:intergenic 30.0%
! GCAAAATGAAGAAATTTTGC+TGG - tig0003655:14497-14516 Msa1340030:intron 30.0%
! TGAAGAAATTTTGCTGGAAT+TGG - tig0003655:14503-14522 Msa1340030:intron 30.0%
TAAAAGCAAACACCTGATTA+CGG + tig0003655:14605-14624 None:intergenic 30.0%
!!! GCTTATATTTTAGGATTACG+TGG + tig0003655:14793-14812 None:intergenic 30.0%
TTACAATGTAGAAAAGATGG+TGG - tig0003655:14855-14874 Msa1340030:intron 30.0%
TTCACCTACAATTGATCATT+GGG + tig0003655:14945-14964 None:intergenic 30.0%
CTAAAAAACCCATTGATCAT+TGG + tig0003655:15014-15033 None:intergenic 30.0%
GAAATTATGGGTTTCTTACA+TGG + tig0003655:15086-15105 None:intergenic 30.0%
!! ATTGTTCTATTGATTCCAGA+TGG + tig0003655:15114-15133 None:intergenic 30.0%
CTGGAATCAATAGAACAATT+TGG - tig0003655:15115-15134 Msa1340030:intron 30.0%
ATAGAAAATACTGCACATGA+TGG + tig0003655:15143-15162 None:intergenic 30.0%
! CAGTATTTTCTATTTAGTCG+TGG - tig0003655:15150-15169 Msa1340030:intron 30.0%
ACGGTTATTGAAAAAACCAT+GGG - tig0003655:15206-15225 Msa1340030:intron 30.0%
AGTCTGATTTCTATCTAATG+GGG + tig0003655:15342-15361 None:intergenic 30.0%
CAGTCTGATTTCTATCTAAT+GGG + tig0003655:15343-15362 None:intergenic 30.0%
TCAGTCTGATTTCTATCTAA+TGG + tig0003655:15344-15363 None:intergenic 30.0%
CAACTATATAGAAGAAGGAA+TGG - tig0003655:15420-15439 Msa1340030:intron 30.0%
TTTACTCTATCCATCATGTA+AGG + tig0003655:15465-15484 None:intergenic 30.0%
CATGTGAGAAATTAGCATTT+GGG + tig0003655:15556-15575 None:intergenic 30.0%
! AATTTCTCACATGCCTTTTA+CGG - tig0003655:15563-15582 Msa1340030:intron 30.0%
AAATGAATAACAAAGAGGGA+GGG + tig0003655:15675-15694 None:intergenic 30.0%
AAAATGAATAACAAAGAGGG+AGG + tig0003655:15676-15695 None:intergenic 30.0%
TTTAGTTGAAAATAACCCCA+AGG + tig0003655:15814-15833 None:intergenic 30.0%
AACGAAGTAGAAAACTATTG+TGG + tig0003655:16734-16753 None:intergenic 30.0%
ATAAAAGCTCCGATCTTATT+TGG - tig0003655:16980-16999 Msa1340030:intron 30.0%
CTAGAGAAACCAAATAAGAT+CGG + tig0003655:16992-17011 None:intergenic 30.0%
! ATGTTTTTCATGGGAATTGA+TGG + tig0003655:17019-17038 None:intergenic 30.0%
! CTTCAAAAGAATACCGATTA+AGG + tig0003655:17050-17069 None:intergenic 30.0%
! GAAGTTTGATTTCTTGGTTA+AGG - tig0003655:17066-17085 Msa1340030:intron 30.0%
! AGCATCACTATTTTCAACTT+AGG + tig0003655:17119-17138 None:intergenic 30.0%
ACAAATTCAGAGTTCAGATT+TGG + tig0003655:17287-17306 None:intergenic 30.0%
AAAATCACAATGCAAGACAA+GGG + tig0003655:17497-17516 None:intergenic 30.0%
AAAAATCACAATGCAAGACA+AGG + tig0003655:17498-17517 None:intergenic 30.0%
!! TAAAGTTGATACCAAGATAG+TGG - tig0003655:17534-17553 Msa1340030:CDS 30.0%
AAAATTACTCTCCACTATCT+TGG + tig0003655:17548-17567 None:intergenic 30.0%
CAACATCAATGCTACTAATA+AGG - tig0003655:17641-17660 Msa1340030:intron 30.0%
! AATTTTTCTGCAATGTCAAG+GGG + tig0003655:17678-17697 None:intergenic 30.0%
! CAAATTTTTCTGCAATGTCA+AGG + tig0003655:17680-17699 None:intergenic 30.0%
CTTGACATTGCAGAAAAATT+TGG - tig0003655:17678-17697 Msa1340030:intron 30.0%
TTTCTCTTCAACATATTGAC+CGG + tig0003655:17988-18007 None:intergenic 30.0%
! AAAGTAAATGGCTTTTCACT+TGG - tig0003655:18005-18024 Msa1340030:CDS 30.0%
ACAAAAAATATCAGGAAAGC+TGG + tig0003655:18053-18072 None:intergenic 30.0%
!!! ATTTTTTGTGTTTGATAGCC+TGG - tig0003655:18064-18083 Msa1340030:CDS 30.0%
!! TTGATAATGCTCTCTACAAT+CGG - tig0003655:18293-18312 Msa1340030:intron 30.0%
GATAGATGAGACAAAATTGA+GGG - tig0003655:18346-18365 Msa1340030:intron 30.0%
AAGTGAGGGATAATGTTGAA+AGG - tig0003655:13239-13258 Msa1340030:three_prime_UTR 35.0%
AGTGAGGGATAATGTTGAAA+GGG - tig0003655:13240-13259 Msa1340030:three_prime_UTR 35.0%
! TATGTTTTCTGTTGTTGGGT+TGG - tig0003655:13655-13674 Msa1340030:CDS 35.0%
! GAAAAACAGAAGAGTTTTCG+TGG - tig0003655:13728-13747 Msa1340030:CDS 35.0%
GATACTACTTCAAAACCATG+AGG - tig0003655:13907-13926 Msa1340030:CDS 35.0%
TAGCGAGATACTCAAATACT+TGG - tig0003655:14015-14034 Msa1340030:CDS 35.0%
ATTGGACAAATCTGTAGTCA+TGG + tig0003655:14244-14263 None:intergenic 35.0%
TGTGTGTAAAGCAGTTGAAT+TGG + tig0003655:14262-14281 None:intergenic 35.0%
GGTTTGAATCTGATTCCAAA+AGG + tig0003655:14320-14339 None:intergenic 35.0%
! GGATTTAGGACTGATAAGAA+AGG - tig0003655:14444-14463 Msa1340030:intron 35.0%
! CCTCTAGATTTAAAACTGCT+CGG + tig0003655:14539-14558 None:intergenic 35.0%
ATTGCATATTGCTGCAAAGA+AGG - tig0003655:14578-14597 Msa1340030:intron 35.0%
TTGCATATTGCTGCAAAGAA+GGG - tig0003655:14579-14598 Msa1340030:intron 35.0%
! CTTCTCGTTCATTTTCTACT+AGG + tig0003655:14904-14923 None:intergenic 35.0%
GTTCACCTACAATTGATCAT+TGG + tig0003655:14946-14965 None:intergenic 35.0%
CAATTGTAGGTGAACATGAA+TGG - tig0003655:14951-14970 Msa1340030:intron 35.0%
! ATGAATGGCTTTTCAATTGC+TGG - tig0003655:14966-14985 Msa1340030:intron 35.0%
AATAACCACCCAATGATCAA+TGG - tig0003655:14934-14953 Msa1340030:intron 35.0%
ATAACCACCCAATGATCAAT+GGG - tig0003655:14935-14954 Msa1340030:intron 35.0%
CAGATGGCAAAGGAAATTAT+GGG + tig0003655:15098-15117 None:intergenic 35.0%
!!! GGTTTTTTCAATAACCGTGA+TGG + tig0003655:15204-15223 None:intergenic 35.0%
CACGGTTATTGAAAAAACCA+TGG - tig0003655:15205-15224 Msa1340030:intron 35.0%
!! GATTAAGAAGTGCTTGTACA+GGG - tig0003655:15372-15391 Msa1340030:intron 35.0%
AGGGATTTCACTTTAACAAG+CGG - tig0003655:15391-15410 Msa1340030:intron 35.0%
TATAGAAGAAGGAATGGCAA+TGG - tig0003655:15426-15445 Msa1340030:intron 35.0%
GCATGTGAGAAATTAGCATT+TGG + tig0003655:15557-15576 None:intergenic 35.0%
AGAGAAATATATAGGGGGAA+GGG + tig0003655:15599-15618 None:intergenic 35.0%
AAGAGAAATATATAGGGGGA+AGG + tig0003655:15600-15619 None:intergenic 35.0%
AATGAATAACAAAGAGGGAG+GGG + tig0003655:15674-15693 None:intergenic 35.0%
! ACCAAAAGTGCACACAATTT+AGG - tig0003655:15936-15955 Msa1340030:intron 35.0%
! CCAAAAGTGCACACAATTTA+GGG - tig0003655:15937-15956 Msa1340030:intron 35.0%
CAGTAAAAACTACTTGCCTA+TGG - tig0003655:16055-16074 Msa1340030:intron 35.0%
TAGTATGCACATACTTCCAT+AGG + tig0003655:16074-16093 None:intergenic 35.0%
! TCGTATTCATGCACATTTTG+TGG + tig0003655:16168-16187 None:intergenic 35.0%
GAAAATTCAATAGTCGAGGA+TGG + tig0003655:16632-16651 None:intergenic 35.0%
GGTTGAAAATTCAATAGTCG+AGG + tig0003655:16636-16655 None:intergenic 35.0%
CTACTCAAACCAGAGATAAA+TGG + tig0003655:16864-16883 None:intergenic 35.0%
! TTATCTCTGGTTTGAGTAGT+AGG - tig0003655:16865-16884 Msa1340030:intron 35.0%
AGTAGTAGGTATAAGTTCCT+TGG - tig0003655:16879-16898 Msa1340030:intron 35.0%
AAAAAAAGTGATGGCATCCA+AGG + tig0003655:16899-16918 None:intergenic 35.0%
GGAAATACATTGCCAAAGTA+AGG + tig0003655:17179-17198 None:intergenic 35.0%
TAATAAGAGAGAAACAGACC+TGG + tig0003655:17228-17247 None:intergenic 35.0%
!! CTTATTAGCTTTGTACAGTC+TGG - tig0003655:17241-17260 Msa1340030:CDS 35.0%
!!! TTGTACAGTCTGGTTTGTTT+TGG - tig0003655:17251-17270 Msa1340030:CDS 35.0%
TGAACTCTGAATTTGTGAGA+GGG - tig0003655:17291-17310 Msa1340030:CDS 35.0%
!!! TTCAGTATGGGTTGTTTTTC+AGG + tig0003655:17473-17492 None:intergenic 35.0%
AAATCACAATGCAAGACAAG+GGG + tig0003655:17496-17515 None:intergenic 35.0%
CATCAATGCTACTAATAAGG+CGG - tig0003655:17644-17663 Msa1340030:intron 35.0%
ATCAATGCTACTAATAAGGC+GGG - tig0003655:17645-17664 Msa1340030:intron 35.0%
AGATCTTGTCTCCATAATGA+GGG - tig0003655:17707-17726 Msa1340030:intron 35.0%
! TTTAGTTGCTTTGCTGCATT+TGG + tig0003655:17771-17790 None:intergenic 35.0%
TTCTCTTCAACATATTGACC+GGG + tig0003655:17987-18006 None:intergenic 35.0%
CCAAAGAAATGAATAATGCC+AGG + tig0003655:18085-18104 None:intergenic 35.0%
CCTGGCATTATTCATTTCTT+TGG - tig0003655:18082-18101 Msa1340030:CDS 35.0%
AGTTGTTGTGATTGAGCAAA+AGG - tig0003655:18127-18146 Msa1340030:exon 35.0%
TTGTCATTAACAAGCTCATG+TGG - tig0003655:18168-18187 Msa1340030:intron 35.0%
TGAAGGCAATGGAAATGAAA+AGG + tig0003655:18202-18221 None:intergenic 35.0%
GCTATATATGCTACAGTGAT+TGG - tig0003655:18266-18285 Msa1340030:intron 35.0%
GGATAGATGAGACAAAATTG+AGG - tig0003655:18345-18364 Msa1340030:intron 35.0%
! TTTTGAACGGTGAATACAAG+AGG - tig0003655:18414-18433 Msa1340030:five_prime_UTR 35.0%
GACTACAGAAACAAGTAGAA+AGG - tig0003655:18544-18563 Msa1340030:five_prime_UTR 35.0%
GTTGAAAGGGAAGCTAGAAA+TGG - tig0003655:13253-13272 Msa1340030:three_prime_UTR 40.0%
! GAAGAGTTTTCGTGGATTCA+TGG - tig0003655:13736-13755 Msa1340030:CDS 40.0%
!! TACCGATTCATTTAGCTGCT+CGG - tig0003655:13858-13877 Msa1340030:CDS 40.0%
! TTCTGAGAACGGACATGATT+TGG - tig0003655:13988-14007 Msa1340030:CDS 40.0%
GAAGGGATCATAACCATTTC+TGG + tig0003655:14065-14084 None:intergenic 40.0%
GTCAGAGTTATAGTGAGACA+TGG + tig0003655:14160-14179 None:intergenic 40.0%
CAAACCTTGCAAAAATAGCC+AGG - tig0003655:14334-14353 Msa1340030:intron 40.0%
!!! TGTTCCTGGCTATTTTTGCA+AGG + tig0003655:14341-14360 None:intergenic 40.0%
GCAAAAATAGCCAGGAACAA+TGG - tig0003655:14342-14361 Msa1340030:intron 40.0%
TGTGAAAGCCTTACTAAGCA+AGG - tig0003655:14410-14429 Msa1340030:intron 40.0%
! AGATTTAAAACTGCTCGGTC+AGG + tig0003655:14534-14553 None:intergenic 40.0%
!!! CCGAGCAGTTTTAAATCTAG+AGG - tig0003655:14536-14555 Msa1340030:intron 40.0%
!! ATTATGGCTTGTTTGCACAC+TGG - tig0003655:14828-14847 Msa1340030:intron 40.0%
ACCACCCAATGATCAATTGT+AGG - tig0003655:14938-14957 Msa1340030:intron 40.0%
ACCTACAATTGATCATTGGG+TGG + tig0003655:14942-14961 None:intergenic 40.0%
AAAACCCATTGATCATTGGG+TGG + tig0003655:15010-15029 None:intergenic 40.0%
CCAGATGGCAAAGGAAATTA+TGG + tig0003655:15099-15118 None:intergenic 40.0%
CCATAATTTCCTTTGCCATC+TGG - tig0003655:15096-15115 Msa1340030:intron 40.0%
!! CTATTGATTCCAGATGGCAA+AGG + tig0003655:15108-15127 None:intergenic 40.0%
!! GTGGATTGGAAAAACCATCA+CGG - tig0003655:15187-15206 Msa1340030:intron 40.0%
ACAAGCTCAAATAACTCCCA+TGG + tig0003655:15225-15244 None:intergenic 40.0%
ACATAACAACTAAGCACACC+CGG + tig0003655:15263-15282 None:intergenic 40.0%
TCTAATGGGGTTCCTATCAT+AGG + tig0003655:15329-15348 None:intergenic 40.0%
!! GGATTAAGAAGTGCTTGTAC+AGG - tig0003655:15371-15390 Msa1340030:intron 40.0%
AAGAAGGAATGGCAATGGTT+GGG - tig0003655:15431-15450 Msa1340030:intron 40.0%
AGAAATTAGCATTTGGGCTC+GGG + tig0003655:15550-15569 None:intergenic 40.0%
GAGAAATTAGCATTTGGGCT+CGG + tig0003655:15551-15570 None:intergenic 40.0%
TGAGCGAAGAAGAGAGATAA+GGG + tig0003655:15632-15651 None:intergenic 40.0%
ATGAGCGAAGAAGAGAGATA+AGG + tig0003655:15633-15652 None:intergenic 40.0%
! TGGGTTGAATTATCTGTCCT+TGG - tig0003655:15794-15813 Msa1340030:intron 40.0%
GGGTTGAATTATCTGTCCTT+GGG - tig0003655:15795-15814 Msa1340030:intron 40.0%
GGTTGAATTATCTGTCCTTG+GGG - tig0003655:15796-15815 Msa1340030:intron 40.0%
AAAATATAGTCCCTGCTCCA+AGG - tig0003655:15869-15888 Msa1340030:intron 40.0%
! CCCTAAATTGTGTGCACTTT+TGG + tig0003655:15940-15959 None:intergenic 40.0%
ATCATGCTAATCGAGATACC+AGG + tig0003655:15994-16013 None:intergenic 40.0%
TGAATACGAACACAGAGACA+AGG - tig0003655:16179-16198 Msa1340030:intron 40.0%
GACAAGGACAAACTCAATAC+AGG - tig0003655:16195-16214 Msa1340030:intron 40.0%
TCTCAGCTGTATCTTCTTTC+TGG - tig0003655:16558-16577 Msa1340030:intron 40.0%
ACGTGAAAGTCACACATTAC+CGG - tig0003655:16758-16777 Msa1340030:intron 40.0%
ACTAAAATCTGAAGACAGGC+CGG + tig0003655:16780-16799 None:intergenic 40.0%
CGCAACTAAAATCTGAAGAC+AGG + tig0003655:16784-16803 None:intergenic 40.0%
!!! AGATTTTAGTTGCGCCTCTT+TGG - tig0003655:16790-16809 Msa1340030:intron 40.0%
CTGAACTCTGAATTTGTGAG+AGG - tig0003655:17290-17309 Msa1340030:CDS 40.0%
AAGGAGAAATAATCTGCAGG+AGG + tig0003655:17324-17343 None:intergenic 40.0%
GCAAAGGAGAAATAATCTGC+AGG + tig0003655:17327-17346 None:intergenic 40.0%
!! TGTTGGCTGCATTCTTTTGA+TGG - tig0003655:17370-17389 Msa1340030:CDS 40.0%
!!! TGTTTTTCAGGCTGATTGGT+GGG + tig0003655:17461-17480 None:intergenic 40.0%
!!! TTGTTTTTCAGGCTGATTGG+TGG + tig0003655:17462-17481 None:intergenic 40.0%
CTCATTATGGAGACAAGATC+TGG + tig0003655:17708-17727 None:intergenic 40.0%
CAGATCTTGTCTCCATAATG+AGG - tig0003655:17706-17725 Msa1340030:intron 40.0%
! TCAGCTTCTTAGCGATTTTC+TGG + tig0003655:17866-17885 None:intergenic 40.0%
CTGAAGAAACTCCACATAAG+TGG - tig0003655:17882-17901 Msa1340030:CDS 40.0%
TCTCTTCAACATATTGACCG+GGG + tig0003655:17986-18005 None:intergenic 40.0%
ATTCATTTCTTTGGCTGTCG+TGG - tig0003655:18091-18110 Msa1340030:CDS 40.0%
AGTGAGAGAAATGAAGGCAA+TGG + tig0003655:18213-18232 None:intergenic 40.0%
CACGTAAGTGAGAGAAATGA+AGG + tig0003655:18219-18238 None:intergenic 40.0%
CTTCATTTCTCTCACTTACG+TGG - tig0003655:18217-18236 Msa1340030:intron 40.0%
CAGAATGACACAATAGCACA+TGG + tig0003655:18321-18340 None:intergenic 40.0%
! GCTATTGTGTCATTCTGCAT+AGG - tig0003655:18324-18343 Msa1340030:intron 40.0%
TATGCGACATGGAGAAAGAA+CGG + tig0003655:18379-18398 None:intergenic 40.0%
! TCAGACCAGGAGATTTTGAA+CGG - tig0003655:18401-18420 Msa1340030:intron 40.0%
ATTCACCGTTCAAAATCTCC+TGG + tig0003655:18409-18428 None:intergenic 40.0%
TCATAGCTTAGATCGTAGCT+TGG + tig0003655:18478-18497 None:intergenic 40.0%
GCAACAGCAAGCATCAAAGA+CGG - tig0003655:13422-13441 Msa1340030:CDS 45.0%
! GAGAAGTTTTCGCGTTGTCA+TGG - tig0003655:13766-13785 Msa1340030:CDS 45.0%
AAGTGAGAGGAAGAAGAGCA+AGG - tig0003655:13811-13830 Msa1340030:CDS 45.0%
AAGAAGAGCAAGGAATCACC+TGG - tig0003655:13821-13840 Msa1340030:CDS 45.0%
AGAAGAGCAAGGAATCACCT+GGG - tig0003655:13822-13841 Msa1340030:CDS 45.0%
! ACCGATTCATTTAGCTGCTC+GGG - tig0003655:13859-13878 Msa1340030:CDS 45.0%
TCAAAACCATGAGGCAGCAA+AGG - tig0003655:13916-13935 Msa1340030:CDS 45.0%
TCTCAGAAGCGACGTAAAGA+GGG + tig0003655:13976-13995 None:intergenic 45.0%
TTCTCAGAAGCGACGTAAAG+AGG + tig0003655:13977-13996 None:intergenic 45.0%
! CTTTACGTCGCTTCTGAGAA+CGG - tig0003655:13977-13996 Msa1340030:CDS 45.0%
GCTTCTATTGTCGCCAGAAA+TGG - tig0003655:14049-14068 Msa1340030:CDS 45.0%
TGCTTTGCAGCAACATGGAA+GGG + tig0003655:14082-14101 None:intergenic 45.0%
TTCCATGTTGCTGCAAAGCA+GGG - tig0003655:14082-14101 Msa1340030:CDS 45.0%
TCTGTAGTCATGGCCAAGTT+GGG + tig0003655:14234-14253 None:intergenic 45.0%
ATCTGTAGTCATGGCCAAGT+TGG + tig0003655:14235-14254 None:intergenic 45.0%
! TGACGTCGTGAATCTCCTTT+TGG - tig0003655:14302-14321 Msa1340030:intron 45.0%
GACAGTCTTACCATTGTTCC+TGG + tig0003655:14355-14374 None:intergenic 45.0%
TAAGACTGTCCTTCACTCTG+CGG - tig0003655:14365-14384 Msa1340030:intron 45.0%
GCTTGGATCCTTGCTTAGTA+AGG + tig0003655:14421-14440 None:intergenic 45.0%
AGGTCAAACTGCACTACACA+TGG - tig0003655:14464-14483 Msa1340030:intron 45.0%
CACTACACATGGCTGTGAAA+GGG - tig0003655:14475-14494 Msa1340030:intron 45.0%
!! AGGATCTGACTTTCAGGTTC+GGG + tig0003655:15041-15060 None:intergenic 45.0%
!! GAGGATCTGACTTTCAGGTT+CGG + tig0003655:15042-15061 None:intergenic 45.0%
CAGAAGAGGATCTGACTTTC+AGG + tig0003655:15047-15066 None:intergenic 45.0%
AAAGTCAGATCCTCTTCTGC+AGG - tig0003655:15048-15067 Msa1340030:intron 45.0%
AGATCCTCTTCTGCAGGTTT+AGG - tig0003655:15054-15073 Msa1340030:intron 45.0%
TTAGTCGTGGACCATCTACT+TGG - tig0003655:15163-15182 Msa1340030:intron 45.0%
ACCATCTACTTGGAGTGGAT+TGG - tig0003655:15173-15192 Msa1340030:intron 45.0%
TCCAATCCACTCCAAGTAGA+TGG + tig0003655:15177-15196 None:intergenic 45.0%
GAAGAAGGAATGGCAATGGT+TGG - tig0003655:15430-15449 Msa1340030:intron 45.0%
AGAAGGAATGGCAATGGTTG+GGG - tig0003655:15432-15451 Msa1340030:intron 45.0%
! GTCGGCTTTCTCTCAGAATA+GGG + tig0003655:15506-15525 None:intergenic 45.0%
GAAATTAGCATTTGGGCTCG+GGG + tig0003655:15549-15568 None:intergenic 45.0%
GGGTAAGTGGTAACCGTAAA+AGG + tig0003655:15579-15598 None:intergenic 45.0%
TATATAGGGGGAAGGGTAAG+TGG + tig0003655:15592-15611 None:intergenic 45.0%
GAGCGAAGAAGAGAGATAAG+GGG + tig0003655:15631-15650 None:intergenic 45.0%
ATGCACAACTGTATGTCCAC+CGG - tig0003655:15714-15733 Msa1340030:intron 45.0%
GGTCATCATGCTTCAAGCTA+TGG + tig0003655:15743-15762 None:intergenic 45.0%
CTTATGTTTCGTGCACAGCT+CGG + tig0003655:15764-15783 None:intergenic 45.0%
! AGTGCACACAATTTAGGGTG+AGG - tig0003655:15942-15961 Msa1340030:intron 45.0%
! TTTAGGGTGAGGACGACAAT+CGG - tig0003655:15953-15972 Msa1340030:intron 45.0%
!!! CGGGTTGCTTTTTGTTATCC+TGG - tig0003655:15973-15992 Msa1340030:intron 45.0%
ACAAAGTCCAGACTTGATGG+AGG + tig0003655:16513-16532 None:intergenic 45.0%
CAGACAAAGTCCAGACTTGA+TGG + tig0003655:16516-16535 None:intergenic 45.0%
CTGAGATTTACCATGACAGG+AGG + tig0003655:16544-16563 None:intergenic 45.0%
CAGCTGAGATTTACCATGAC+AGG + tig0003655:16547-16566 None:intergenic 45.0%
CAACCAAAAAGACCACCCTT+AGG - tig0003655:16651-16670 Msa1340030:intron 45.0%
! GAACCTAAGGGTGGTCTTTT+TGG + tig0003655:16657-16676 None:intergenic 45.0%
GTAGGAAGAGGTGAACCTAA+GGG + tig0003655:16669-16688 None:intergenic 45.0%
AGTAGGAAGAGGTGAACCTA+AGG + tig0003655:16670-16689 None:intergenic 45.0%
TAGGTTCACCTCTTCCTACT+TGG - tig0003655:16670-16689 Msa1340030:intron 45.0%
TGTTACAGCCAAGTAGGAAG+AGG + tig0003655:16681-16700 None:intergenic 45.0%
ACATCGTGTTACAGCCAAGT+AGG + tig0003655:16687-16706 None:intergenic 45.0%
GGCACATCACCATTTATCTC+TGG - tig0003655:16852-16871 Msa1340030:intron 45.0%
!!! GTTTTTCAGGCTGATTGGTG+GGG + tig0003655:17460-17479 None:intergenic 45.0%
!!! GGGTTGTTTTTCAGGCTGAT+TGG + tig0003655:17465-17484 None:intergenic 45.0%
CAAGACAAGGGGTTCAGTAT+GGG + tig0003655:17485-17504 None:intergenic 45.0%
!! TACCCTCCGTTGATAACAAG+CGG + tig0003655:17620-17639 None:intergenic 45.0%
TCTCCATAATGAGGGATGCT+GGG - tig0003655:17715-17734 Msa1340030:intron 45.0%
CTGTTAATTCCACCGACCAA+GGG - tig0003655:17739-17758 Msa1340030:intron 45.0%
ATTTGGAGGTTTCCCTTGGT+CGG + tig0003655:17754-17773 None:intergenic 45.0%
! AGTTGCTTTGCTGCATTTGG+AGG + tig0003655:17768-17787 None:intergenic 45.0%
CATTGTTCAGGCCACTTATG+TGG + tig0003655:17896-17915 None:intergenic 45.0%
CAGAGGTAATCGCATTGTTC+AGG + tig0003655:17908-17927 None:intergenic 45.0%
AACAGCAACAACAGTAGCAG+AGG + tig0003655:17925-17944 None:intergenic 45.0%
CATTAACAAGCTCATGTGGC+TGG - tig0003655:18172-18191 Msa1340030:intron 45.0%
TTCTCTCACTTACGTGGTAG+TGG - tig0003655:18223-18242 Msa1340030:intron 45.0%
TCTCTCACTTACGTGGTAGT+GGG - tig0003655:18224-18243 Msa1340030:intron 45.0%
CATGGAGAAAGAACGGCTTT+CGG + tig0003655:18372-18391 None:intergenic 45.0%
CAAGAGGATGTACGCACTTT+AGG - tig0003655:18430-18449 Msa1340030:five_prime_UTR 45.0%
! GTTTTCGCGTTGTCATGGAG+AGG - tig0003655:13771-13790 Msa1340030:CDS 50.0%
TGAGCTTCATGGGAAGTGAG+AGG - tig0003655:13798-13817 Msa1340030:CDS 50.0%
AAGGAATCACCTGGGAAACG+TGG - tig0003655:13830-13849 Msa1340030:CDS 50.0%
GCCCGAGCAGCTAAATGAAT+CGG + tig0003655:13863-13882 None:intergenic 50.0%
ATTCATTTAGCTGCTCGGGC+TGG - tig0003655:13863-13882 Msa1340030:CDS 50.0%
TTCATTTAGCTGCTCGGGCT+GGG - tig0003655:13864-13883 Msa1340030:CDS 50.0%
ACAAGTCCTTTGCTGCCTCA+TGG + tig0003655:13925-13944 None:intergenic 50.0%
TGAGGCAGCAAAGGACTTGT+TGG - tig0003655:13925-13944 Msa1340030:CDS 50.0%
TTGGCAAAGCAGAACCTCGA+GGG - tig0003655:13944-13963 Msa1340030:CDS 50.0%
CTCAGAAGCGACGTAAAGAG+GGG + tig0003655:13975-13994 None:intergenic 50.0%
CTGCTTTGCAGCAACATGGA+AGG + tig0003655:14083-14102 None:intergenic 50.0%
CTTCCATGTTGCTGCAAAGC+AGG - tig0003655:14081-14100 Msa1340030:CDS 50.0%
! GCTGCACTCTTTTCCCAACT+TGG - tig0003655:14218-14237 Msa1340030:CDS 50.0%
TTACACACAGCTGCTACCCA+AGG - tig0003655:14273-14292 Msa1340030:intron 50.0%
CACGACGTCAATGTGACCTT+GGG + tig0003655:14292-14311 None:intergenic 50.0%
TCACGACGTCAATGTGACCT+TGG + tig0003655:14293-14312 None:intergenic 50.0%
CTTCACTCTGCGGCTAGAAT+GGG - tig0003655:14375-14394 Msa1340030:intron 50.0%
TTCACTCTGCGGCTAGAATG+GGG - tig0003655:14376-14395 Msa1340030:intron 50.0%
CTAAGCAAGGATCCAAGCAC+CGG - tig0003655:14423-14442 Msa1340030:intron 50.0%
!! AGGATCCAAGCACCGGATTT+AGG - tig0003655:14430-14449 Msa1340030:intron 50.0%
TCAGTCCTAAATCCGGTGCT+TGG + tig0003655:14438-14457 None:intergenic 50.0%
GCACTACACATGGCTGTGAA+AGG - tig0003655:14474-14493 Msa1340030:intron 50.0%
TGCAAAGAAGGGCCGTAATC+AGG - tig0003655:14590-14609 Msa1340030:intron 50.0%
CATGCCTAAACCTGCAGAAG+AGG + tig0003655:15061-15080 None:intergenic 50.0%
TAACAACTAAGCACACCCGG+CGG + tig0003655:15260-15279 None:intergenic 50.0%
TAATGTCTTCGGCTCCGTGT+TGG - tig0003655:15289-15308 Msa1340030:intron 50.0%
CGCTGCCAATAGTACCAACA+CGG + tig0003655:15306-15325 None:intergenic 50.0%
CTATTGGCAGCGCCTATGAT+AGG - tig0003655:15314-15333 Msa1340030:intron 50.0%
GAAGGAATGGCAATGGTTGG+GGG - tig0003655:15433-15452 Msa1340030:intron 50.0%
GGGGTAAGCACCTTACATGA+TGG - tig0003655:15452-15471 Msa1340030:intron 50.0%
! GGTCGGCTTTCTCTCAGAAT+AGG + tig0003655:15507-15526 None:intergenic 50.0%
GAATAACAAAGAGGGAGGGG+AGG + tig0003655:15671-15690 None:intergenic 50.0%
TGCACAACTGTATGTCCACC+GGG - tig0003655:15715-15734 Msa1340030:intron 50.0%
ATGCTTCAAGCTATGGACCC+CGG + tig0003655:15736-15755 None:intergenic 50.0%
! CTTCAGATAGCCTTGGAGCA+GGG + tig0003655:15882-15901 None:intergenic 50.0%
! TCTTCAGATAGCCTTGGAGC+AGG + tig0003655:15883-15902 None:intergenic 50.0%
CTCCAAGGCTATCTGAAGAC+AGG - tig0003655:15884-15903 Msa1340030:intron 50.0%
AGCCTGTCTTCAGATAGCCT+TGG + tig0003655:15889-15908 None:intergenic 50.0%
TTAGGGTGAGGACGACAATC+GGG - tig0003655:15954-15973 Msa1340030:intron 50.0%
ACTTCAGCCTCCATCAAGTC+TGG - tig0003655:16503-16522 Msa1340030:intron 50.0%
GTCTGAATCTCCTCCTGTCA+TGG - tig0003655:16531-16550 Msa1340030:intron 50.0%
CAATAGTCGAGGATGGTGAC+TGG + tig0003655:16625-16644 None:intergenic 50.0%
GCAAGACAAGGGGTTCAGTA+TGG + tig0003655:17486-17505 None:intergenic 50.0%
!! TGTCCGCCGCTTGTTATCAA+CGG - tig0003655:17611-17630 Msa1340030:CDS 50.0%
GTCTCCATAATGAGGGATGC+TGG - tig0003655:17714-17733 Msa1340030:intron 50.0%
CTCCATAATGAGGGATGCTG+GGG - tig0003655:17716-17735 Msa1340030:intron 50.0%
GCTGTTAATTCCACCGACCA+AGG - tig0003655:17738-17757 Msa1340030:intron 50.0%
CTGCATTTGGAGGTTTCCCT+TGG + tig0003655:17758-17777 None:intergenic 50.0%
CATTTCTTTGGCTGTCGTGG+TGG - tig0003655:18094-18113 Msa1340030:CDS 50.0%
TAGTGGGATCACACTCACGA+TGG - tig0003655:18240-18259 Msa1340030:intron 50.0%
CTGGTCTGATGTATGCGACA+TGG + tig0003655:18390-18409 None:intergenic 50.0%
CATGTCGCATACATCAGACC+AGG - tig0003655:18388-18407 Msa1340030:intron 50.0%
GAGAGGCAGCTGAGCTTCAT+GGG - tig0003655:13788-13807 Msa1340030:CDS 55.0%
GTTGGCAAAGCAGAACCTCG+AGG - tig0003655:13943-13962 Msa1340030:CDS 55.0%
TGGCAAAGCAGAACCTCGAG+GGG - tig0003655:13945-13964 Msa1340030:CDS 55.0%
GACCCTGCTTTGCAGCAACA+TGG + tig0003655:14087-14106 None:intergenic 55.0%
GCTGCAAAGCAGGGTCATCT+TGG - tig0003655:14091-14110 Msa1340030:CDS 55.0%
CCATTCTAGCCGCAGAGTGA+AGG + tig0003655:14377-14396 None:intergenic 55.0%
CCTTCACTCTGCGGCTAGAA+TGG - tig0003655:14374-14393 Msa1340030:intron 55.0%
! TGCGGCTAGAATGGGGCATT+TGG - tig0003655:14383-14402 Msa1340030:intron 55.0%
CGTGGACCATCTACTTGGAG+TGG - tig0003655:15168-15187 Msa1340030:intron 55.0%
! TTGTTTGTTGCCTGTGCCGC+CGG - tig0003655:15241-15260 Msa1340030:intron 55.0%
! CGGCTCCGTGTTGGTACTAT+TGG - tig0003655:15298-15317 Msa1340030:intron 55.0%
!! TTGGCTCTGAGAAGCGAGGT+CGG + tig0003655:15524-15543 None:intergenic 55.0%
!! GGTATTGGCTCTGAGAAGCG+AGG + tig0003655:15528-15547 None:intergenic 55.0%
AGCATTTGGGCTCGGGGTAT+TGG + tig0003655:15543-15562 None:intergenic 55.0%
GCACAACTGTATGTCCACCG+GGG - tig0003655:15716-15735 Msa1340030:intron 55.0%
GGAAGAGGTGAACCTAAGGG+TGG + tig0003655:16666-16685 None:intergenic 55.0%
GCTCACGAGCAGTTCCAAAG+AGG + tig0003655:16807-16826 None:intergenic 55.0%
!! CCTCCGTTGATAACAAGCGG+CGG + tig0003655:17617-17636 None:intergenic 55.0%
!! CGCCGCTTGTTATCAACGGA+GGG - tig0003655:17615-17634 Msa1340030:CDS 55.0%
AGCCCCAGCATCCCTCATTA+TGG + tig0003655:17721-17740 None:intergenic 55.0%
CTGGCGTGTCTGTTGGAGTT+GGG + tig0003655:17829-17848 None:intergenic 55.0%
TCTGGCGTGTCTGTTGGAGT+TGG + tig0003655:17830-17849 None:intergenic 55.0%
ACTCCAACAGACACGCCAGA+CGG - tig0003655:17830-17849 Msa1340030:CDS 55.0%
TTGACCGGGGACAGTGAAGA+TGG + tig0003655:17973-17992 None:intergenic 55.0%
GGAGAGGCAGCTGAGCTTCA+TGG - tig0003655:13787-13806 Msa1340030:CDS 60.0%
GGTAAGTCGCCACGTTTCCC+AGG + tig0003655:13842-13861 None:intergenic 60.0%
GGCAAAGCAGAACCTCGAGG+GGG - tig0003655:13946-13965 Msa1340030:CDS 60.0%
! TGTTTGTTGCCTGTGCCGCC+GGG - tig0003655:15242-15261 Msa1340030:intron 60.0%
AGGGGAGGAGAGGAACGTGT+GGG + tig0003655:15656-15675 None:intergenic 60.0%
ACAAAGAGGGAGGGGAGGAG+AGG + tig0003655:15666-15685 None:intergenic 60.0%
CTTCAAGCTATGGACCCCGG+TGG + tig0003655:15733-15752 None:intergenic 60.0%
!! CCGCCGCTTGTTATCAACGG+AGG - tig0003655:17614-17633 Msa1340030:CDS 60.0%
TGGAGGTTTCCCTTGGTCGG+TGG + tig0003655:17751-17770 None:intergenic 60.0%
CTCCAACAGACACGCCAGAC+GGG - tig0003655:17831-17850 Msa1340030:CDS 60.0%
GCAGCCATCTTCACTGTCCC+CGG - tig0003655:17966-17985 Msa1340030:CDS 60.0%
AAAGAGGGGTCTCCCCCTCG+AGG + tig0003655:13961-13980 None:intergenic 65.0%
GAGGGGAGGAGAGGAACGTG+TGG + tig0003655:15657-15676 None:intergenic 65.0%
TGCCCGTCTGGCGTGTCTGT+TGG + tig0003655:17836-17855 None:intergenic 65.0%
AGACACGCCAGACGGGCATG+AGG - tig0003655:17838-17857 Msa1340030:CDS 65.0%
GACACGCCAGACGGGCATGA+GGG - tig0003655:17839-17858 Msa1340030:CDS 65.0%
TCTGGACCCTCATGCCCGTC+TGG + tig0003655:17848-17867 None:intergenic 65.0%
CTAAGCACACCCGGCGGCAC+AGG + tig0003655:15254-15273 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0003655 gene 13205 18647 13205 ID=Msa1340030;Name=Msa1340030
tig0003655 mRNA 13205 18647 13205 ID=Msa1340030-mRNA-1;Parent=Msa1340030;Name=Msa1340030-mRNA-1;_AED=0.13;_eAED=0.13;_QI=278|1|1|1|0.5|0.2|5|163|546
tig0003655 exon 13205 13283 13205 ID=Msa1340030-mRNA-1:exon:2383;Parent=Msa1340030-mRNA-1
tig0003655 exon 13317 14243 13317 ID=Msa1340030-mRNA-1:exon:2382;Parent=Msa1340030-mRNA-1
tig0003655 exon 17241 17650 17241 ID=Msa1340030-mRNA-1:exon:2381;Parent=Msa1340030-mRNA-1
tig0003655 exon 17740 18166 17740 ID=Msa1340030-mRNA-1:exon:2380;Parent=Msa1340030-mRNA-1
tig0003655 exon 18409 18647 18409 ID=Msa1340030-mRNA-1:exon:2379;Parent=Msa1340030-mRNA-1
tig0003655 five_prime_UTR 18409 18647 18409 ID=Msa1340030-mRNA-1:five_prime_utr;Parent=Msa1340030-mRNA-1
tig0003655 five_prime_UTR 18128 18166 18128 ID=Msa1340030-mRNA-1:five_prime_utr;Parent=Msa1340030-mRNA-1
tig0003655 CDS 17740 18127 17740 ID=Msa1340030-mRNA-1:cds;Parent=Msa1340030-mRNA-1
tig0003655 CDS 17241 17650 17241 ID=Msa1340030-mRNA-1:cds;Parent=Msa1340030-mRNA-1
tig0003655 CDS 13401 14243 13401 ID=Msa1340030-mRNA-1:cds;Parent=Msa1340030-mRNA-1
tig0003655 three_prime_UTR 13317 13400 13317 ID=Msa1340030-mRNA-1:three_prime_utr;Parent=Msa1340030-mRNA-1
tig0003655 three_prime_UTR 13205 13283 13205 ID=Msa1340030-mRNA-1:three_prime_utr;Parent=Msa1340030-mRNA-1
Gene Sequence

>Msa1340030

ATGGAAAAACAGAAGAGTTTTCGTGGATTCATGGAGAAACAGAGAAGTTTTCGCGTTGTCATGGAGAGGCAGCTGAGCTTCATGGGAAGTGAGAGGAAGAAGAGCAAGGAATCACCTGGGAAACGTGGCGACTTACCGATTCATTTAGCTGCTCGGGCTGGGAACTTGACTAGAGTCAAAGAGATACTACTTCAAAACCATGAGGCAGCAAAGGACTTGTTGGCAAAGCAGAACCTCGAGGGGGAGACCCCTCTTTACGTCGCTTCTGAGAACGGACATGATTTGGTTGTTAGCGAGATACTCAAATACTTGGACTTGCAAACTGCTTCTATTGTCGCCAGAAATGGTTATGATCCCTTCCATGTTGCTGCAAAGCAGGGTCATCTTGAGGTGCTGAGAGAACTGCTGCACTCTTTTCCCAACTTGGCCATGACTACAGATTTGTCCAATTCAACTGCTTTACACACAGCTGCTACCCAAGGTCACATTGACGTCGTGAATCTCCTTTTGGAATCAGATTCAAACCTTGCAAAAATAGCCAGGAACAATGGTAAGACTGTCCTTCACTCTGCGGCTAGAATGGGGCATTTGGAAGTTGTGAAAGCCTTACTAAGCAAGGATCCAAGCACCGGATTTAGGACTGATAAGAAAGGTCAAACTGCACTACACATGGCTGTGAAAGGGCAAAATGAAGAAATTTTGCTGGAATTGGTGAAACCTGACCGAGCAGTTTTAAATCTAGAGGATAATAAAGGAAATACAGCATTGCATATTGCTGCAAAGAAGGGCCGTAATCAGAATGTCCGCCGCTTGTTATCAACGGAGGGTATCAACATCAATGCTACTAATAAGGCGGGAGAGACTCCCCTTGACATTGCAGAAAAATTTGGTAGTCCAGATCTTGTCTCCATAATGAGGGATGCTGGGGCTGTTAATTCCACCGACCAAGGGAAACCTCCAAATGCAGCAAAGCAACTAAAGCAGACTGTCAGCGACATAAAGCATGATGTGCAATCCCAACTCCAACAGACACGCCAGACGGGCATGAGGGTCCAGAAAATCGCTAAGAAGCTGAAGAAACTCCACATAAGTGGCCTGAACAATGCGATTACCTCTGCTACTGTTGTTGCTGTTCTCATTGCTACAGTTGCTTTTGCAGCCATCTTCACTGTCCCCGGTCAATATGTTGAAGAGAAAGTAAATGGCTTTTCACTTGGACAAGCAACTATAGCGAACAATCCAGCTTTCCTGATATTTTTTGTGTTTGATAGCCTGGCATTATTCATTTCTTTGGCTGTCGTGGTGGTTCAAACTTCAGTTGTTGTGATTGAGCAAAAGGCAAAGAAGCAGCTTGTTTTTGTCATTAACAAGCTCATGTGGCTGGCTTGCCTTTTCATTTCCATTGCCTTCATTTCTCTCACTTACGTGGTAGTGGGATCACACTCACGATGGCTTGCTATATATGCTACAGTGATTGGAAGCTTGATAATGCTCTCTACAATCGGTTCCATGTGCTATTGTGTCATTCTGCATAGGATAGATGAGACAAAATTGAGGGCCGAAAGCCGTTCTTTCTCCATGTCGCATACATCAGACCAGGAGATTTTGAACGGTGAATACAAGAGGATGTACGCACTTTAG
Protein sequence

>Msa1340030

MEKQKSFRGFMEKQRSFRVVMERQLSFMGSERKKSKESPGKRGDLPIHLAARAGNLTRVKEILLQNHEAAKDLLAKQNLEGETPLYVASENGHDLVVSEILKYLDLQTASIVARNGYDPFHVAAKQGHLEVLRELLHSFPNLAMTTDLSNSTALHTAATQGHIDVVNLLLESDSNLAKIARNNGKTVLHSAARMGHLEVVKALLSKDPSTGFRTDKKGQTALHMAVKGQNEEILLELVKPDRAVLNLEDNKGNTALHIAAKKGRNQNVRRLLSTEGININATNKAGETPLDIAEKFGSPDLVSIMRDAGAVNSTDQGKPPNAAKQLKQTVSDIKHDVQSQLQQTRQTGMRVQKIAKKLKKLHISGLNNAITSATVVAVLIATVAFAAIFTVPGQYVEEKVNGFSLGQATIANNPAFLIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFVINKLMWLACLFISIAFISLTYVVVGSHSRWLAIYATVIGSLIMLSTIGSMCYCVILHRIDETKLRAESRSFSMSHTSDQEILNGEYKRMYAL*