AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1340380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1340380 MtrunA17_Chr3g0112671 95.043 585 25 1 1 585 1 581 0.0 1143
Msa1340380 MtrunA17_Chr3g0112611 67.462 587 184 2 4 583 2 588 0.0 851
Msa1340380 MtrunA17_Chr7g0240381 65.125 562 190 3 11 570 7 564 0.0 778
Msa1340380 MtrunA17_Chr4g0008651 62.010 587 216 5 1 580 1 587 0.0 772
Msa1340380 MtrunA17_Chr3g0112631 85.616 292 35 2 301 585 3 294 4.41e-179 507
Msa1340380 MtrunA17_Chr8g0375311 42.759 580 315 9 1 564 4 582 1.48e-159 468
Msa1340380 MtrunA17_Chr3g0104011 42.424 561 313 6 14 564 3 563 1.48e-158 465
Msa1340380 MtrunA17_Chr7g0241741 42.179 569 313 8 14 571 3 566 9.78e-158 463
Msa1340380 MtrunA17_Chr8g0375321 41.667 576 323 6 2 565 6 580 1.76e-156 461
Msa1340380 MtrunA17_Chr8g0375351 40.522 575 329 6 4 566 11 584 1.85e-156 461
Msa1340380 MtrunA17_Chr8g0375291 42.652 558 305 7 11 555 18 573 2.72e-155 457
Msa1340380 MtrunA17_Chr8g0353031 41.093 567 290 8 35 577 20 566 5.38e-154 454
Msa1340380 MtrunA17_Chr4g0005901 41.361 573 324 7 6 569 7 576 1.82e-153 452
Msa1340380 MtrunA17_Chr3g0142101 42.162 555 309 6 10 558 12 560 3.71e-153 452
Msa1340380 MtrunA17_Chr8g0375341 40.522 575 329 6 4 566 11 584 5.72e-153 452
Msa1340380 MtrunA17_Chr4g0014871 38.919 555 309 7 21 564 18 553 2.96e-151 446
Msa1340380 MtrunA17_Chr8g0375331 41.959 541 301 6 11 539 2 541 5.24e-150 443
Msa1340380 MtrunA17_Chr1g0187241 38.567 586 334 7 12 577 5 584 7.34e-150 444
Msa1340380 MtrunA17_Chr7g0261851 41.003 578 312 8 10 568 5 572 8.31e-150 444
Msa1340380 MtrunA17_Chr7g0261811 40.564 567 318 6 12 564 6 567 1.38e-149 444
Msa1340380 MtrunA17_Chr3g0114501 40.642 561 319 7 15 564 4 561 3.54e-149 442
Msa1340380 MtrunA17_Chr7g0261881 40.564 567 318 7 12 564 6 567 5.53e-149 442
Msa1340380 MtrunA17_Chr1g0166791 39.646 565 324 8 14 565 5 565 4.88e-147 437
Msa1340380 MtrunA17_Chr7g0261771 39.362 564 323 8 15 564 13 571 6.72e-147 437
Msa1340380 MtrunA17_Chr4g0014781 39.929 566 303 10 13 564 9 551 2.88e-146 434
Msa1340380 MtrunA17_Chr3g0077151 41.187 556 287 8 21 564 16 543 1.06e-145 432
Msa1340380 MtrunA17_Chr4g0014841 40.000 565 302 9 13 564 9 549 3.43e-145 431
Msa1340380 MtrunA17_Chr4g0014791 39.216 561 312 6 13 564 9 549 8.16e-145 430
Msa1340380 MtrunA17_Chr7g0261791 38.500 600 337 10 1 585 1 583 1.37e-143 428
Msa1340380 MtrunA17_Chr1g0166741 40.410 537 306 9 17 545 11 541 1.59e-143 427
Msa1340380 MtrunA17_Chr8g0375361 42.068 561 312 6 21 569 27 586 3.02e-143 427
Msa1340380 MtrunA17_Chr1g0166711 40.323 558 315 9 21 565 13 565 2.08e-140 420
Msa1340380 MtrunA17_Chr4g0014801 39.254 563 311 9 13 564 9 551 9.09e-140 417
Msa1340380 MtrunA17_Chr3g0142091 40.497 563 321 8 10 564 3 559 3.68e-138 413
Msa1340380 MtrunA17_Chr1g0166771 40.476 504 286 8 52 547 10 507 5.84e-133 399
Msa1340380 MtrunA17_Chr5g0422881 36.525 564 345 5 33 583 20 583 2.61e-130 394
Msa1340380 MtrunA17_Chr5g0399061 39.138 580 323 12 14 572 9 579 5.49e-130 392
Msa1340380 MtrunA17_Chr4g0056431 38.449 593 332 12 9 579 7 588 5.04e-126 383
Msa1340380 MtrunA17_Chr3g0082631 43.023 430 229 3 151 564 30 459 7.47e-124 373
Msa1340380 MtrunA17_Chr5g0415791 37.523 549 326 7 33 564 29 577 4.44e-123 375
Msa1340380 MtrunA17_Chr5g0400371 36.254 582 352 10 2 567 81 659 1.24e-122 377
Msa1340380 MtrunA17_Chr7g0217461 36.159 578 349 7 14 574 5 579 1.41e-122 374
Msa1340380 MtrunA17_Chr5g0399071 38.272 567 329 10 15 564 8 570 1.68e-121 371
Msa1340380 MtrunA17_Chr3g0112651 89.071 183 20 0 120 302 21 203 4.11e-121 356
Msa1340380 MtrunA17_Chr7g0255621 36.216 555 334 9 44 580 31 583 1.27e-119 367
Msa1340380 MtrunA17_Chr4g0054891 35.387 568 352 10 6 561 84 648 2.45e-119 368
Msa1340380 MtrunA17_Chr1g0213711 34.083 578 362 8 4 574 2 567 4.20e-117 360
Msa1340380 MtrunA17_Chr2g0284701 35.314 589 351 9 4 564 2 588 3.15e-116 358
Msa1340380 MtrunA17_Chr7g0255611 34.359 585 364 9 1 570 1 580 4.13e-116 357
Msa1340380 MtrunA17_Chr7g0255601 36.044 541 330 6 44 569 38 577 3.77e-113 350
Msa1340380 MtrunA17_Chr7g0214461 32.682 563 367 8 27 581 72 630 1.51e-112 349
Msa1340380 MtrunA17_Chr7g0261661 39.520 458 258 7 121 564 1 453 8.96e-112 343
Msa1340380 MtrunA17_Chr8g0362781 35.179 560 341 9 32 570 29 587 1.37e-111 345
Msa1340380 MtrunA17_Chr2g0276751 34.513 565 349 9 16 572 21 572 4.28e-111 344
Msa1340380 MtrunA17_Chr7g0271221 35.870 552 339 9 33 578 17 559 6.19e-111 343
Msa1340380 MtrunA17_Chr1g0166731 40.305 459 256 9 120 565 9 462 3.90e-110 338
Msa1340380 MtrunA17_Chr5g0415961 35.932 590 334 11 1 564 1 572 5.55e-110 341
Msa1340380 MtrunA17_Chr5g0439381 36.672 589 334 14 5 582 9 569 2.33e-109 340
Msa1340380 MtrunA17_Chr4g0063591 37.088 577 344 9 14 578 3 572 1.38e-108 337
Msa1340380 MtrunA17_Chr1g0193391 33.635 553 353 8 25 571 9 553 1.59e-108 338
Msa1340380 MtrunA17_Chr7g0214731 33.100 571 356 12 34 582 62 628 1.31e-107 337
Msa1340380 MtrunA17_Chr8g0362711 35.642 592 332 13 1 564 1 571 4.12e-107 333
Msa1340380 MtrunA17_Chr4g0059991 34.211 570 340 10 39 583 28 587 1.10e-106 333
Msa1340380 MtrunA17_Chr7g0218851 32.517 572 372 9 12 574 26 592 2.49e-106 332
Msa1340380 MtrunA17_Chr4g0059971 32.821 585 360 11 1 564 12 584 6.27e-106 331
Msa1340380 MtrunA17_Chr4g0014861 38.263 426 240 7 150 564 15 428 7.34e-106 325
Msa1340380 MtrunA17_Chr7g0261751 36.853 483 246 6 15 448 13 485 4.56e-105 326
Msa1340380 MtrunA17_Chr8g0379971 34.215 605 355 11 15 579 2 603 2.10e-102 322
Msa1340380 MtrunA17_Chr4g0069581 35.509 521 322 8 52 565 5 518 2.25e-102 320
Msa1340380 MtrunA17_Chr4g0059981 32.663 597 371 9 1 574 3 591 5.85e-102 321
Msa1340380 MtrunA17_Chr6g0451841 35.145 552 304 11 41 565 13 537 2.15e-100 315
Msa1340380 MtrunA17_Chr7g0240271 31.560 545 356 8 33 561 24 567 2.72e-98 311
Msa1340380 MtrunA17_Chr3g0133341 34.173 556 337 11 41 577 22 567 1.58e-96 305
Msa1340380 MtrunA17_Chr4g0011471 32.630 521 337 6 54 561 37 556 9.54e-96 304
Msa1340380 MtrunA17_Chr4g0011041 29.534 579 389 9 1 561 1 578 6.78e-94 299
Msa1340380 MtrunA17_Chr4g0060001 32.136 557 357 10 35 571 31 586 7.32e-94 300
Msa1340380 MtrunA17_Chr7g0240281 31.874 571 364 12 33 579 24 593 9.01e-94 299
Msa1340380 MtrunA17_Chr8g0362801 34.115 469 292 6 123 574 3 471 1.25e-93 295
Msa1340380 MtrunA17_Chr8g0390331 31.843 559 354 11 35 574 17 567 2.40e-91 292
Msa1340380 MtrunA17_Chr1g0157601 30.597 536 346 8 44 561 26 553 5.14e-91 291
Msa1340380 MtrunA17_Chr8g0379991 33.929 560 317 10 58 564 5 564 3.79e-90 289
Msa1340380 MtrunA17_Chr5g0415841 33.333 465 289 8 123 569 3 464 3.59e-88 281
Msa1340380 MtrunA17_Chr7g0261731 40.625 352 186 5 15 353 13 354 1.30e-86 273
Msa1340380 MtrunA17_Chr2g0331521 30.199 553 363 9 33 567 22 569 2.59e-86 280
Msa1340380 MtrunA17_Chr1g0147631 31.250 560 346 11 44 579 36 580 1.47e-85 278
Msa1340380 MtrunA17_Chr1g0157621 31.467 518 338 8 57 561 4 517 6.47e-84 272
Msa1340380 MtrunA17_Chr1g0157611 30.672 551 354 10 30 561 13 554 3.99e-83 270
Msa1340380 MtrunA17_Chr2g0326211 30.998 571 346 10 21 566 2 549 2.44e-82 268
Msa1340380 MtrunA17_Chr4g0003761 29.690 549 361 10 31 561 28 569 1.00e-81 268
Msa1340380 MtrunA17_Chr7g0235521 32.112 464 298 8 132 579 12 474 1.61e-81 264
Msa1340380 MtrunA17_Chr2g0331471 31.504 565 355 13 31 572 87 642 3.13e-81 269
Msa1340380 MtrunA17_Chr2g0331511 29.843 573 374 12 31 582 20 585 2.10e-80 265
Msa1340380 MtrunA17_Chr7g0240181 32.112 464 298 8 132 579 12 474 2.36e-80 261
Msa1340380 MtrunA17_Chr7g0240211 32.112 464 298 8 132 579 12 474 2.77e-80 260
Msa1340380 MtrunA17_Chr2g0331481 31.150 565 357 13 31 572 24 579 2.83e-80 265
Msa1340380 MtrunA17_Chr7g0240131 32.373 451 288 8 132 566 12 461 8.14e-80 259
Msa1340380 MtrunA17_Chr2g0325961 31.504 565 352 11 21 566 2 550 2.03e-79 260
Msa1340380 MtrunA17_Chr1g0177591 30.053 569 372 12 2 561 13 564 2.34e-79 261
Msa1340380 MtrunA17_Chr2g0325951 31.083 563 356 11 21 566 2 549 2.11e-78 258
Msa1340380 MtrunA17_Chr2g0331461 29.021 572 374 11 31 579 24 586 3.74e-74 248
Msa1340380 MtrunA17_Chr7g0240151 30.454 463 289 8 132 579 12 456 4.49e-73 241
Msa1340380 MtrunA17_Chr7g0234181 33.937 442 260 9 123 561 1 413 1.36e-72 238
Msa1340380 MtrunA17_Chr3g0142121 44.358 257 138 2 302 558 11 262 4.83e-70 227
Msa1340380 MtrunA17_Chr7g0234151 33.557 447 265 10 118 561 1 418 2.39e-69 230
Msa1340380 MtrunA17_Chr3g0142111 40.323 310 177 4 4 308 20 326 4.16e-69 227
Msa1340380 MtrunA17_Chr7g0234381 33.483 445 268 8 118 561 1 418 4.79e-69 229
Msa1340380 MtrunA17_Chr3g0112661 94.118 102 6 0 18 119 16 117 2.54e-63 204
Msa1340380 MtrunA17_Chr1g0177611 30.137 438 285 9 133 561 10 435 3.12e-63 214
Msa1340380 MtrunA17_Chr1g0177631 30.046 436 288 8 133 561 10 435 4.90e-61 209
Msa1340380 MtrunA17_Chr4g0060071 36.013 311 177 8 274 570 2 304 4.97e-59 199
Msa1340380 MtrunA17_Chr7g0261721 37.313 201 120 3 370 564 1 201 3.11e-45 160
Msa1340380 MtrunA17_Chr4g0014851 45.794 107 58 0 21 127 18 124 2.57e-30 116
Msa1340380 MtrunA17_Chr7g0261831 40.881 159 86 3 258 413 1 154 4.17e-30 117
Msa1340380 MtrunA17_Chr2g0326221 31.197 234 138 3 333 566 15 225 3.32e-27 109
Msa1340380 MtrunA17_Chr1g0147591 29.744 195 126 4 159 346 10 200 1.45e-25 104
Msa1340380 MtrunA17_Chr7g0261671 39.496 119 70 1 1 119 2 118 5.37e-25 100
Msa1340380 MtrunA17_Chr1g0166721 43.434 99 56 0 21 119 13 111 1.05e-23 97.4
Msa1340380 MtrunA17_Chr3g0082621 44.444 72 40 0 48 119 1 72 9.98e-19 81.3
Msa1340380 MtrunA17_Chr4g0060061 36.607 112 71 0 150 261 17 128 3.54e-18 81.3
Msa1340380 MtrunA17_Chr4g0060051 33.663 101 67 0 19 119 8 108 7.68e-14 68.6
Msa1340380 MtrunA17_Chr1g0147581 37.288 118 63 2 426 537 3 115 1.19e-13 67.8
Msa1340380 MtrunA17_Chr8g0362791 41.860 86 48 2 39 123 42 126 1.43e-13 68.6
Msa1340380 MtrunA17_Chr8g0382591 33.628 113 70 2 301 408 3 115 2.89e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1340380 AT2G37900.1 59.785 557 217 4 14 567 17 569 0.0 730
Msa1340380 AT3G53960.1 57.932 561 229 4 14 567 16 576 0.0 715
Msa1340380 AT2G37900.2 60.041 493 190 4 78 567 2 490 0.0 641
Msa1340380 AT3G54140.1 42.527 562 311 6 14 564 3 563 1.03e-163 479
Msa1340380 AT3G54140.2 42.527 562 311 6 14 564 3 563 1.03e-163 479
Msa1340380 AT2G40460.1 42.703 555 300 7 21 565 10 556 1.42e-155 459
Msa1340380 AT3G54450.1 38.339 566 323 5 25 577 3 555 1.66e-155 457
Msa1340380 AT2G02040.1 41.796 579 321 8 1 564 4 581 4.76e-155 457
Msa1340380 AT5G01180.2 40.957 564 320 7 13 564 1 563 3.21e-153 452
Msa1340380 AT5G01180.3 40.957 564 320 7 13 564 1 563 3.21e-153 452
Msa1340380 AT5G01180.1 40.957 564 320 7 13 564 1 563 3.21e-153 452
Msa1340380 AT1G62200.1 40.415 579 326 8 1 564 13 587 2.69e-150 445
Msa1340380 AT1G62200.2 38.651 608 325 9 1 564 13 616 2.60e-144 431
Msa1340380 AT1G62200.3 38.651 608 325 9 1 564 27 630 3.62e-144 431
Msa1340380 AT5G46040.1 37.394 591 341 8 9 577 2 585 1.13e-139 418
Msa1340380 AT1G72140.1 40.569 562 285 10 23 565 22 553 3.63e-139 416
Msa1340380 AT5G46050.1 36.788 579 345 6 9 574 2 572 1.06e-136 410
Msa1340380 AT2G02020.1 37.889 578 311 9 1 566 4 545 6.27e-135 404
Msa1340380 AT1G22540.1 38.698 553 310 8 23 564 18 552 6.65e-135 405
Msa1340380 AT1G72120.1 39.896 579 306 13 9 569 3 557 8.41e-134 402
Msa1340380 AT1G72125.1 38.448 567 322 9 15 569 10 561 1.08e-133 402
Msa1340380 AT1G72130.1 38.940 547 298 9 26 564 15 533 6.26e-132 396
Msa1340380 AT1G68570.1 38.937 583 328 9 1 567 1 571 2.45e-129 392
Msa1340380 AT1G22550.1 38.544 563 314 7 23 569 18 564 3.97e-129 390
Msa1340380 AT1G68570.2 40.000 535 305 6 49 567 7 541 1.43e-126 384
Msa1340380 AT1G69870.1 36.796 568 345 8 32 585 48 615 1.51e-124 380
Msa1340380 AT1G59740.1 36.333 589 356 11 1 575 4 587 5.99e-123 375
Msa1340380 AT1G22570.1 37.719 570 323 10 16 569 12 565 1.53e-119 365
Msa1340380 AT1G32450.1 34.642 586 361 9 6 572 8 590 7.51e-119 365
Msa1340380 AT2G02020.2 36.145 581 296 12 1 566 4 524 2.82e-117 358
Msa1340380 AT1G12110.1 37.258 569 334 10 25 574 17 581 3.72e-114 352
Msa1340380 AT1G22570.2 37.753 543 307 9 43 569 1 528 5.69e-114 350
Msa1340380 AT1G33440.1 36.411 574 342 10 1 562 6 568 1.74e-112 348
Msa1340380 AT2G26690.1 37.432 553 327 9 18 558 7 552 1.03e-111 345
Msa1340380 AT5G13400.1 32.862 566 357 9 24 568 52 615 4.41e-109 340
Msa1340380 AT1G18880.1 33.445 595 356 11 1 574 1 576 7.42e-109 338
Msa1340380 AT5G46050.2 37.419 465 271 5 123 574 3 460 1.56e-108 334
Msa1340380 AT1G27040.1 37.345 565 333 10 17 569 11 566 4.00e-108 336
Msa1340380 AT1G27040.2 37.279 566 334 10 16 569 6 562 4.02e-108 336
Msa1340380 AT1G27080.1 33.735 581 339 13 22 579 2 559 3.39e-107 334
Msa1340380 AT1G69850.1 36.054 588 333 11 12 565 2 580 8.71e-107 333
Msa1340380 AT5G19640.1 32.428 552 346 9 36 578 60 593 3.26e-106 332
Msa1340380 AT3G21670.1 36.268 568 319 11 21 565 12 559 7.02e-105 328
Msa1340380 AT5G14940.1 35.393 534 310 10 52 565 24 542 7.89e-105 327
Msa1340380 AT4G21680.1 33.512 561 353 7 21 563 14 572 2.38e-104 327
Msa1340380 AT2G26690.2 37.476 523 308 9 48 558 4 519 1.19e-103 323
Msa1340380 AT1G72130.2 38.498 426 233 7 146 564 12 415 1.61e-101 314
Msa1340380 AT1G72130.3 38.498 426 233 7 146 564 12 415 1.61e-101 314
Msa1340380 AT1G69860.1 33.214 560 357 7 13 565 1 550 3.89e-101 317
Msa1340380 AT1G27040.3 37.266 534 316 9 48 569 8 534 7.34e-101 316
Msa1340380 AT2G26690.3 37.232 513 303 9 58 558 2 507 1.01e-100 316
Msa1340380 AT1G27080.2 34.078 537 309 12 66 579 3 517 1.20e-100 315
Msa1340380 AT5G62680.1 33.865 564 344 11 39 579 47 604 3.69e-100 317
Msa1340380 AT3G47960.1 33.276 583 347 11 12 574 54 614 6.69e-99 314
Msa1340380 AT5G62730.1 32.456 570 341 11 20 567 41 588 1.57e-94 301
Msa1340380 AT5G28470.2 31.238 541 360 9 32 561 14 553 8.91e-94 298
Msa1340380 AT3G01350.1 33.151 549 324 9 52 572 24 557 1.58e-93 298
Msa1340380 AT5G28470.1 31.054 541 359 10 32 561 14 551 5.49e-91 291
Msa1340380 AT5G62730.2 32.545 550 327 11 40 567 2 529 1.89e-90 289
Msa1340380 AT3G25260.1 33.886 543 315 12 25 561 11 515 5.50e-90 287
Msa1340380 AT3G25280.1 33.818 550 312 10 25 561 11 521 1.93e-89 286
Msa1340380 AT3G45650.1 30.713 547 347 8 33 567 20 546 2.48e-85 276
Msa1340380 AT3G45720.1 30.505 554 359 9 23 567 7 543 5.88e-85 275
Msa1340380 AT3G45660.1 31.646 553 346 8 35 575 21 553 6.87e-85 275
Msa1340380 AT3G45660.3 31.646 553 346 8 35 575 21 553 6.87e-85 275
Msa1340380 AT1G52190.1 29.196 572 373 12 33 579 20 584 7.48e-85 276
Msa1340380 AT3G45660.2 31.646 553 346 8 35 575 42 574 1.25e-84 275
Msa1340380 AT3G16180.1 30.139 574 372 9 33 584 22 588 8.46e-84 273
Msa1340380 AT3G45710.1 30.109 548 361 7 35 574 21 554 2.70e-82 268
Msa1340380 AT3G45680.1 29.946 551 359 9 34 574 19 552 6.30e-82 267
Msa1340380 AT3G45650.2 29.319 573 347 9 33 567 20 572 1.59e-79 262
Msa1340380 AT3G45700.1 28.991 545 366 7 34 574 15 542 1.41e-75 250
Msa1340380 AT3G45690.1 27.636 550 342 11 34 579 17 514 4.58e-65 221
Msa1340380 AT2G38100.2 30.303 528 316 14 63 575 2 492 3.04e-54 192
Msa1340380 AT2G38100.1 30.303 528 316 14 63 575 18 508 8.27e-54 191
Msa1340380 AT2G38100.3 30.303 528 316 14 63 575 24 514 9.20e-54 191
Msa1340380 AT5G11570.1 30.364 247 167 3 316 561 234 476 3.02e-32 130
Msa1340380 AT5G11570.1 28.959 221 146 7 44 257 22 238 8.69e-25 108

Find 107 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCTTTCAATTGTAAATA+TGG 0.161415 tig0004141:+18053 Msa1340380:exon
GTGCCTCAATATTTGATTCT+TGG 0.203916 tig0004141:+21087 Msa1340380:CDS
CAGCAAAGAATGTAAATTAT+TGG 0.229518 tig0004141:+18583 Msa1340380:CDS
GCAATTAGTACCTGTAAAAT+TGG 0.231196 tig0004141:-19992 Msa1340380:intergenic
CAATATTTGATTCTTGGTTT+TGG 0.233362 tig0004141:+21093 Msa1340380:CDS
TGCCATAAGGAAAAGGAATT+TGG 0.240957 tig0004141:+20015 Msa1340380:CDS
TCTTATTCTCACAATTCTTA+TGG 0.244786 tig0004141:+19895 Msa1340380:CDS
ACAATAATCTTGTCATATAT+TGG 0.283281 tig0004141:-20889 Msa1340380:intergenic
TTCTTCCCTCGTCTACCTTA+TGG 0.292882 tig0004141:+18686 Msa1340380:CDS
AAGAAATTGAACAAGAGAAA+TGG 0.294015 tig0004141:+18103 Msa1340380:CDS
TCTGTATATTACCTAATGTA+TGG 0.330279 tig0004141:+21551 Msa1340380:three_prime_UTR
GGTAGACGAGGGAAGAAAAT+AGG 0.330508 tig0004141:-18680 Msa1340380:intergenic
TGCCCTTTACTGTATCTCCT+TGG 0.335755 tig0004141:+19685 Msa1340380:CDS
TACTGTATCTCCTTGGGTAC+TGG 0.340147 tig0004141:+19692 Msa1340380:CDS
ACAACCTTGATGCCTCTAAT+AGG 0.341482 tig0004141:+18615 Msa1340380:CDS
AGAAAATGTCTTTCTTCAAC+TGG 0.350438 tig0004141:+19786 Msa1340380:CDS
ATATATTGGAACAGATATTA+AGG 0.351984 tig0004141:-20875 Msa1340380:intergenic
AAAATACTATGAGTGTGTTT+TGG 0.359634 tig0004141:+21061 Msa1340380:CDS
GCCCTTTACTGTATCTCCTT+GGG 0.365199 tig0004141:+19686 Msa1340380:CDS
AGAAATTGAACAAGAGAAAT+GGG 0.372263 tig0004141:+18104 Msa1340380:CDS
GCATTATATCTTAGTGTGAT+TGG 0.374950 tig0004141:+21192 Msa1340380:CDS
AGCAAAGAATGTAAATTATT+GGG 0.392590 tig0004141:+18584 Msa1340380:CDS
GGATATAAATTCTAGTCGTT+TGG 0.393101 tig0004141:+21296 Msa1340380:CDS
GTTCCTCTTCGTGCTAAAAC+TGG 0.398492 tig0004141:+18159 Msa1340380:CDS
TATAAGAGTGTTCAGAAGAT+AGG 0.403771 tig0004141:+21396 Msa1340380:CDS
CCTTGGGACATATCTGACTT+TGG 0.407534 tig0004141:-20073 Msa1340380:intergenic
GCAAGAAATCCACCTATTAG+AGG 0.418901 tig0004141:-18627 Msa1340380:intergenic
CCTCTTTGCTAAGAAAAGAT+AGG 0.419613 tig0004141:-21367 Msa1340380:intergenic
CCTAAGCTTCTCATTGAGTC+AGG 0.427299 tig0004141:-21165 Msa1340380:intergenic
GTTTCCACTGCAGCAGCAAT+TGG 0.430965 tig0004141:+20850 Msa1340380:CDS
TACAATAAAGAAGGATTTGA+GGG 0.434190 tig0004141:-20043 Msa1340380:intergenic
TTCTCAATATAATTCCCATA+TGG 0.437323 tig0004141:+20713 Msa1340380:CDS
GGAACTTCATACAATAAAGA+AGG 0.439537 tig0004141:-20052 Msa1340380:intergenic
GTTAATGAAGTTAGCCATAT+GGG 0.440341 tig0004141:-20727 Msa1340380:intergenic
TATCTTAGTGTGATTGGAGT+TGG 0.441851 tig0004141:+21198 Msa1340380:CDS
TATTGCATAGAAGCCTTCCT+TGG 0.443514 tig0004141:-20090 Msa1340380:intergenic
CTTCATGCATCACCTTTGTA+AGG 0.447423 tig0004141:-18548 Msa1340380:intergenic
CCTGACTCAATGAGAAGCTT+AGG 0.449986 tig0004141:+21165 Msa1340380:CDS
TGTTAATGAAGTTAGCCATA+TGG 0.454015 tig0004141:-20728 Msa1340380:intergenic
GAGTCTCTTAGTTTCTACTA+AGG 0.454066 tig0004141:-21013 Msa1340380:intergenic
TTCTCATTGAGTCAGGAACT+TGG 0.455125 tig0004141:-21158 Msa1340380:intergenic
GTCACTGTTGCTAGTCTCCA+TGG 0.455353 tig0004141:-20667 Msa1340380:intergenic
GTGTTGCATGGCTTTAAACT+TGG 0.456231 tig0004141:-19614 Msa1340380:intergenic
AGACATGTCTTTGTGTTGCA+TGG 0.467743 tig0004141:-19626 Msa1340380:intergenic
CTCCCCAGCTAACATTGTCT+TGG 0.472559 tig0004141:-19865 Msa1340380:intergenic
ATGTCCAAGACAATGTTAGC+TGG 0.472623 tig0004141:+19861 Msa1340380:CDS
CTGTATATTACCTAATGTAT+GGG 0.472819 tig0004141:+21552 Msa1340380:three_prime_UTR
CAAGAGAAATGGGTTTATGA+TGG 0.472954 tig0004141:+18114 Msa1340380:CDS
GAGTAGAGATGATGGCATAA+TGG 0.475893 tig0004141:+21448 Msa1340380:CDS
TTCGTGCTAAAACTGGTGTA+TGG 0.476615 tig0004141:+18166 Msa1340380:CDS
AAGATAGGTAATGAAATTGA+TGG 0.477976 tig0004141:+21411 Msa1340380:CDS
CAGAAAAGAATGGTAAAAGT+TGG 0.478780 tig0004141:+21265 Msa1340380:CDS
TGGCTAACTTCATTAACAAC+AGG 0.481985 tig0004141:+20733 Msa1340380:CDS
AAGAATGGTAAAAGTTGGAT+TGG 0.482862 tig0004141:+21270 Msa1340380:CDS
AGGTACTAATTGCTGCCATA+AGG 0.488816 tig0004141:+20002 Msa1340380:CDS
GAGTGATGGAGTAGAGATGA+TGG 0.490797 tig0004141:+21440 Msa1340380:CDS
TTACATTGGTCGATTTCCTA+TGG 0.492235 tig0004141:+18656 Msa1340380:CDS
TGTACTGAGACATTGTCAAT+AGG 0.494792 tig0004141:-19589 Msa1340380:intergenic
GCTCCGAAGCTTTCCAAGCA+TGG 0.502836 tig0004141:-19725 Msa1340380:intergenic
AAACCATGCTTGGAAAGCTT+CGG 0.508863 tig0004141:+19722 Msa1340380:CDS
ATACAATAAAGAAGGATTTG+AGG 0.509081 tig0004141:-20044 Msa1340380:intergenic
TGGTAAAAGTTGGATTGGTA+AGG 0.510712 tig0004141:+21275 Msa1340380:CDS
AAGAATGTAAATTATTGGGC+AGG 0.511527 tig0004141:+18588 Msa1340380:CDS
TAAATTCTAGTCGTTTGGAT+AGG 0.519321 tig0004141:+21301 Msa1340380:CDS
ATGAAGATCACATCGAAGAA+AGG 0.519880 tig0004141:+19759 Msa1340380:CDS
TGGAGGACACAAACCATGCT+TGG 0.520869 tig0004141:+19712 Msa1340380:CDS
ATTGCATAGAAGCCTTCCTT+GGG 0.522021 tig0004141:-20089 Msa1340380:intergenic
ACCCAAGGAGATACAGTAAA+GGG 0.522495 tig0004141:-19687 Msa1340380:intergenic
TGTCCAAGACAATGTTAGCT+GGG 0.526080 tig0004141:+19862 Msa1340380:CDS
TAATTGCTGCCATAAGGAAA+AGG 0.528575 tig0004141:+20008 Msa1340380:CDS
AAAGAGGAATCAGCATACTT+AGG 0.533689 tig0004141:+20941 Msa1340380:CDS
TATGCAATACTAGCAAACTA+AGG 0.535262 tig0004141:+20104 Msa1340380:CDS
TGTTGCATGGCTTTAAACTT+GGG 0.535408 tig0004141:-19613 Msa1340380:intergenic
TTTCTTGCTGATGCTTACAT+TGG 0.537325 tig0004141:+18642 Msa1340380:CDS
AAATGTCTTTCTTCAACTGG+TGG 0.538171 tig0004141:+19789 Msa1340380:CDS
AGGGAAGAAAATAGGACCAT+AGG 0.546416 tig0004141:-18672 Msa1340380:intergenic
AAAATCACTGGCAATGAAAG+AGG 0.547769 tig0004141:+20925 Msa1340380:CDS
GATCATGTCACAGAAAAGAA+TGG 0.548595 tig0004141:+21255 Msa1340380:CDS
TCCACCTATTAGAGGCATCA+AGG 0.552119 tig0004141:-18619 Msa1340380:intergenic
CAGCAATTGAATTTAGTGAA+AGG 0.563243 tig0004141:+18487 Msa1340380:intron
AAACCAAGAATCAAATATTG+AGG 0.566834 tig0004141:-21090 Msa1340380:intergenic
GATGGTTCTGTGGATTGTAA+AGG 0.575241 tig0004141:+18132 Msa1340380:CDS
GACTGAAAATGTGAAACCAA+TGG 0.578848 tig0004141:-20971 Msa1340380:intergenic
ATACTTAGGAGAATTTCCAT+TGG 0.579594 tig0004141:+20955 Msa1340380:CDS
TATAGGTATAGAAGGCCAGA+AGG 0.580744 tig0004141:+19956 Msa1340380:CDS
CAAAGACATGTCTTCAGCCA+AGG 0.583646 tig0004141:+19636 Msa1340380:CDS
TACCCAAGGAGATACAGTAA+AGG 0.586654 tig0004141:-19688 Msa1340380:intergenic
ATTGATGGTTATAAGAGTGA+TGG 0.587797 tig0004141:+21426 Msa1340380:CDS
CTCAATGAGAAGCTTAGGAA+TGG 0.590473 tig0004141:+21170 Msa1340380:CDS
AGGAGATACAGTAAAGGGCA+AGG 0.594151 tig0004141:-19682 Msa1340380:intergenic
GGTGCCAATTGCTGCTGCAG+TGG 0.605942 tig0004141:-20854 Msa1340380:intergenic
ACCTTGATGCCTCTAATAGG+TGG 0.607038 tig0004141:+18618 Msa1340380:CDS
GCTGCAGTGGAAACAGAAGC+TGG 0.609413 tig0004141:-20841 Msa1340380:intergenic
AGTCAGATATGTCCCAAGGA+AGG 0.609821 tig0004141:+20077 Msa1340380:CDS
AATGAACAGGTTTCTTGACA+AGG 0.611995 tig0004141:+20603 Msa1340380:intron
ATGGGTTTATGATGGTTCTG+TGG 0.613959 tig0004141:+18122 Msa1340380:CDS
CAGTGGAAACAGAAGCTGGT+GGG 0.617373 tig0004141:-20837 Msa1340380:intergenic
CCAAAGTCAGATATGTCCCA+AGG 0.629430 tig0004141:+20073 Msa1340380:CDS
TGTATCTCCTTGGGTACTGG+AGG 0.630555 tig0004141:+19695 Msa1340380:CDS
AGCTTGTTTCACAAAGAGTG+TGG 0.633004 tig0004141:-20776 Msa1340380:intergenic
TTTGTGTCCTCCAGTACCCA+AGG 0.635719 tig0004141:-19702 Msa1340380:intergenic
TCTTATATCATACCTTACAA+AGG 0.642725 tig0004141:+18536 Msa1340380:CDS
TATTTACCATAAGGTAGACG+AGG 0.648313 tig0004141:-18692 Msa1340380:intergenic
GTCCAAGACAATGTTAGCTG+GGG 0.649640 tig0004141:+19863 Msa1340380:CDS
ATTTACCATAAGGTAGACGA+GGG 0.679090 tig0004141:-18691 Msa1340380:intergenic
ACAGGAATTTGTGTAGCACA+AGG 0.691356 tig0004141:+20751 Msa1340380:CDS
GCAGTGGAAACAGAAGCTGG+TGG 0.745161 tig0004141:-20838 Msa1340370:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACAAAAAATATTTACCATA+AGG - tig0004141:18704-18723 Msa1340380:intergenic 15.0%
!!! GCATTTTTTTACTTAAAAAT+TGG + tig0004141:18734-18753 Msa1340380:intron 15.0%
!!! TTTTACTTAAAAATTGGAAA+TGG + tig0004141:18740-18759 Msa1340380:intron 15.0%
!! TTTACTTAAAAATTGGAAAT+GGG + tig0004141:18741-18760 Msa1340380:intron 15.0%
!! AAAATAGTATTAGTTAAAGT+AGG + tig0004141:18766-18785 Msa1340380:intron 15.0%
!! AATTAATCAATGTTAAAATG+TGG + tig0004141:18910-18929 Msa1340380:intron 15.0%
!! CATGATAAAAAATTAATGTT+TGG + tig0004141:18953-18972 Msa1340380:intron 15.0%
!!! ATATGATTAATTTTGTAAAC+TGG - tig0004141:19058-19077 Msa1340380:intergenic 15.0%
!!! ATTTACACTTTATAATGTTT+TGG + tig0004141:19117-19136 Msa1340380:intron 15.0%
!!! AATTTTTAGTAAAAGTAACA+AGG - tig0004141:19233-19252 Msa1340380:intergenic 15.0%
!!! CTTCACTATTTTTAAAATAA+GGG - tig0004141:19280-19299 Msa1340380:intergenic 15.0%
!!! ACTTCACTATTTTTAAAATA+AGG - tig0004141:19281-19300 Msa1340380:intergenic 15.0%
!!! CAAAACTGATTTTTATAATA+AGG - tig0004141:19311-19330 Msa1340380:intergenic 15.0%
!!! CTTATTATAAAAATCAGTTT+TGG + tig0004141:19309-19328 Msa1340380:intron 15.0%
!! TTAAAAAAAAAAAGAACAAG+TGG - tig0004141:19336-19355 Msa1340380:intergenic 15.0%
!!! TTCATTTTGTAAATTATTGT+TGG + tig0004141:20238-20257 Msa1340380:intron 15.0%
!! ATCTCTTTCAATTGTAAATA+TGG + tig0004141:18053-18072 Msa1340380:exon 20.0%
!! ATTAACATAATCATCAAGTA+GGG - tig0004141:18455-18474 Msa1340380:intergenic 20.0%
!! AATTAACATAATCATCAAGT+AGG - tig0004141:18456-18475 Msa1340380:intergenic 20.0%
!! TGATTATGTTAATTTCTATG+TGG + tig0004141:18462-18481 Msa1340380:intron 20.0%
!! AGCAAAGAATGTAAATTATT+GGG + tig0004141:18584-18603 Msa1340380:CDS 20.0%
!!! GTTAAGTTTTCTGTATAAAT+AGG + tig0004141:18975-18994 Msa1340380:intron 20.0%
!!! AATAAATTTGTTAATGGACA+TGG + tig0004141:19030-19049 Msa1340380:intron 20.0%
!!! AACTGATTTTTATAATAAGG+AGG - tig0004141:19308-19327 Msa1340380:intergenic 20.0%
!!! TACTTTAAAACCAATTTTAC+AGG + tig0004141:19982-20001 Msa1340380:CDS 20.0%
!! GGAAAAACAATTTAATTAAG+TGG - tig0004141:20550-20569 Msa1340380:intergenic 20.0%
!! GTTCATTTATCTAAAGAATA+AGG - tig0004141:20590-20609 Msa1340380:intergenic 20.0%
!! TATTCTTTAGATAAATGAAC+AGG + tig0004141:20590-20609 Msa1340380:intron 20.0%
!! ATATATTGGAACAGATATTA+AGG - tig0004141:20878-20897 Msa1340380:intergenic 20.0%
!! ACAATAATCTTGTCATATAT+TGG - tig0004141:20892-20911 Msa1340380:intergenic 20.0%
!! TAGTGATTAAAAAACTACTT+AGG - tig0004141:21230-21249 Msa1340380:intergenic 20.0%
!!! TAGTTTTTTAATCACTATTG+TGG + tig0004141:21233-21252 Msa1340380:CDS 20.0%
! AAGAAATTGAACAAGAGAAA+TGG + tig0004141:18103-18122 Msa1340380:CDS 25.0%
! AGAAATTGAACAAGAGAAAT+GGG + tig0004141:18104-18123 Msa1340380:CDS 25.0%
! TCTTATATCATACCTTACAA+AGG + tig0004141:18536-18555 Msa1340380:CDS 25.0%
! CAGCAAAGAATGTAAATTAT+TGG + tig0004141:18583-18602 Msa1340380:CDS 25.0%
! TGATCATTCTACTAATTTCT+TGG + tig0004141:18794-18813 Msa1340380:intron 25.0%
! TAATCAATGTTAAAATGTGG+TGG + tig0004141:18913-18932 Msa1340380:intron 25.0%
!! TATCATCTATGTCACATTTT+AGG + tig0004141:19358-19377 Msa1340380:intron 25.0%
! TGTTTGTTTAAATGCACATT+TGG - tig0004141:19502-19521 Msa1340380:intergenic 25.0%
! TCTTATTCTCACAATTCTTA+TGG + tig0004141:19895-19914 Msa1340380:CDS 25.0%
!! ATGTATCATAGCTTTTTATG+TGG + tig0004141:19922-19941 Msa1340380:CDS 25.0%
!! TGTATCATAGCTTTTTATGT+GGG + tig0004141:19923-19942 Msa1340380:CDS 25.0%
!! AGACTTTTTATAGGTATAGA+AGG + tig0004141:19948-19967 Msa1340380:CDS 25.0%
! TACAATAAAGAAGGATTTGA+GGG - tig0004141:20046-20065 Msa1340380:intergenic 25.0%
! ATACAATAAAGAAGGATTTG+AGG - tig0004141:20047-20066 Msa1340380:intergenic 25.0%
! TTAAATGTAACCACATATGT+CGG - tig0004141:20214-20233 Msa1340380:intergenic 25.0%
!! AGACTATTTCAGTGATTTTA+TGG + tig0004141:20352-20371 Msa1340380:intron 25.0%
! CATATATCCATAAGTTATTC+TGG + tig0004141:20410-20429 Msa1340380:intron 25.0%
!!! AAACTATAAGCTATTTTCAC+AGG - tig0004141:20440-20459 Msa1340380:intergenic 25.0%
! TTCTCAATATAATTCCCATA+TGG + tig0004141:20713-20732 Msa1340380:CDS 25.0%
!! AAAATACTATGAGTGTGTTT+TGG + tig0004141:21061-21080 Msa1340380:CDS 25.0%
! AAACCAAGAATCAAATATTG+AGG - tig0004141:21093-21112 Msa1340380:intergenic 25.0%
!! CAATATTTGATTCTTGGTTT+TGG + tig0004141:21093-21112 Msa1340380:CDS 25.0%
! AAGATAGGTAATGAAATTGA+TGG + tig0004141:21411-21430 Msa1340380:CDS 25.0%
CACAAGTAGATATCTTACTA+AGG - tig0004141:18209-18228 Msa1340380:intergenic 30.0%
CAACTCGACTCAATAAAAAT+TGG - tig0004141:18394-18413 Msa1340380:intergenic 30.0%
CAGCAATTGAATTTAGTGAA+AGG + tig0004141:18487-18506 Msa1340380:intron 30.0%
!!! AGTGAAAGGATAAGCTTTTT+TGG + tig0004141:18501-18520 Msa1340380:CDS 30.0%
!!! GTGAAAGGATAAGCTTTTTT+GGG + tig0004141:18502-18521 Msa1340380:CDS 30.0%
AAGAATGTAAATTATTGGGC+AGG + tig0004141:18588-18607 Msa1340380:CDS 30.0%
AAATTTGAATTCTGTCACCA+AGG + tig0004141:18820-18839 Msa1340380:intron 30.0%
TAATTAACTAATCTCCATCG+TGG - tig0004141:18895-18914 Msa1340380:intergenic 30.0%
!! CTCAATGATTAGTCTCATAA+CGG + tig0004141:19182-19201 Msa1340380:intron 30.0%
!! TCAATGATTAGTCTCATAAC+GGG + tig0004141:19183-19202 Msa1340380:intron 30.0%
!! TTCAAAGGGTTTAAGTTGTA+GGG + tig0004141:19206-19225 Msa1340380:intron 30.0%
!! TTATGTAGCCTTTTTGTTTC+TGG + tig0004141:19421-19440 Msa1340380:intron 30.0%
! ACAACTTCATGAATTTTCCT+TGG - tig0004141:19656-19675 Msa1340380:intergenic 30.0%
AGAAAATGTCTTTCTTCAAC+TGG + tig0004141:19786-19805 Msa1340380:CDS 30.0%
! GTATCATAGCTTTTTATGTG+GGG + tig0004141:19924-19943 Msa1340380:CDS 30.0%
!!! GGTTTTAAAGTATTTCCTTC+TGG - tig0004141:19974-19993 Msa1340380:intergenic 30.0%
GCAATTAGTACCTGTAAAAT+TGG - tig0004141:19995-20014 Msa1340380:intergenic 30.0%
GGAACTTCATACAATAAAGA+AGG - tig0004141:20055-20074 Msa1340380:intergenic 30.0%
TATGCAATACTAGCAAACTA+AGG + tig0004141:20104-20123 Msa1340380:CDS 30.0%
TATCCATAAGTTATTCTGGA+TGG + tig0004141:20414-20433 Msa1340380:intron 30.0%
! TGTTTTTCCAATAACATGAG+TGG + tig0004141:20561-20580 Msa1340380:intron 30.0%
TTGATCAAAAACACAATCCA+TGG + tig0004141:20650-20669 Msa1340380:CDS 30.0%
GTTAATGAAGTTAGCCATAT+GGG - tig0004141:20730-20749 Msa1340380:intergenic 30.0%
TGTTAATGAAGTTAGCCATA+TGG - tig0004141:20731-20750 Msa1340380:intergenic 30.0%
ATACTTAGGAGAATTTCCAT+TGG + tig0004141:20955-20974 Msa1340380:CDS 30.0%
!! TTTTGGTGATTCATTTTCTC+TGG + tig0004141:21110-21129 Msa1340380:CDS 30.0%
GCATTATATCTTAGTGTGAT+TGG + tig0004141:21192-21211 Msa1340380:CDS 30.0%
CAGAAAAGAATGGTAAAAGT+TGG + tig0004141:21265-21284 Msa1340380:CDS 30.0%
AAGAATGGTAAAAGTTGGAT+TGG + tig0004141:21270-21289 Msa1340380:CDS 30.0%
GGATATAAATTCTAGTCGTT+TGG + tig0004141:21296-21315 Msa1340380:CDS 30.0%
TAAATTCTAGTCGTTTGGAT+AGG + tig0004141:21301-21320 Msa1340380:CDS 30.0%
!! TATAAGAGTGTTCAGAAGAT+AGG + tig0004141:21396-21415 Msa1340380:CDS 30.0%
! ATTGATGGTTATAAGAGTGA+TGG + tig0004141:21426-21445 Msa1340380:CDS 30.0%
ATGGAGCAAGAAAAAAAGCA+AGG + tig0004141:18072-18091 Msa1340380:CDS 35.0%
! CAAGAGAAATGGGTTTATGA+TGG + tig0004141:18114-18133 Msa1340380:CDS 35.0%
TTTCTTGCTGATGCTTACAT+TGG + tig0004141:18642-18661 Msa1340380:CDS 35.0%
! TTACATTGGTCGATTTCCTA+TGG + tig0004141:18656-18675 Msa1340380:CDS 35.0%
ATTTACCATAAGGTAGACGA+GGG - tig0004141:18694-18713 Msa1340380:intergenic 35.0%
TATTTACCATAAGGTAGACG+AGG - tig0004141:18695-18714 Msa1340380:intergenic 35.0%
!! GTTAAAATGTGGTGGACATT+TGG + tig0004141:18921-18940 Msa1340380:intron 35.0%
!! GTTCAAAGGGTTTAAGTTGT+AGG + tig0004141:19205-19224 Msa1340380:intron 35.0%
! AGCTGATTCCAGAAACAAAA+AGG - tig0004141:19432-19451 Msa1340380:intergenic 35.0%
TGTACTGAGACATTGTCAAT+AGG - tig0004141:19592-19611 Msa1340380:intergenic 35.0%
!! TGTTGCATGGCTTTAAACTT+GGG - tig0004141:19616-19635 Msa1340380:intergenic 35.0%
ATGAAGATCACATCGAAGAA+AGG + tig0004141:19759-19778 Msa1340380:CDS 35.0%
AAATGTCTTTCTTCAACTGG+TGG + tig0004141:19789-19808 Msa1340380:CDS 35.0%
! TTGTGTTTTGCATTGCTTCT+TGG + tig0004141:19821-19840 Msa1340380:CDS 35.0%
! ATGTGGGGAAGACTTTTTAT+AGG + tig0004141:19939-19958 Msa1340380:CDS 35.0%
TAATTGCTGCCATAAGGAAA+AGG + tig0004141:20008-20027 Msa1340380:CDS 35.0%
TGCCATAAGGAAAAGGAATT+TGG + tig0004141:20015-20034 Msa1340380:CDS 35.0%
! AGCCAAATTCCTTTTCCTTA+TGG - tig0004141:20020-20039 Msa1340380:intergenic 35.0%
!! TTGTTGGTGTCAATGTTGTA+TGG + tig0004141:20254-20273 Msa1340380:intron 35.0%
! CACTGAAATAGTCTTAGAAG+TGG - tig0004141:20346-20365 Msa1340380:intergenic 35.0%
AAGGTAACCACTCATGTTAT+TGG - tig0004141:20571-20590 Msa1340380:intergenic 35.0%
AATGAACAGGTTTCTTGACA+AGG + tig0004141:20603-20622 Msa1340380:intron 35.0%
TGGCTAACTTCATTAACAAC+AGG + tig0004141:20733-20752 Msa1340380:CDS 35.0%
AAAATCACTGGCAATGAAAG+AGG + tig0004141:20925-20944 Msa1340380:CDS 35.0%
AAAGAGGAATCAGCATACTT+AGG + tig0004141:20941-20960 Msa1340380:CDS 35.0%
GACTGAAAATGTGAAACCAA+TGG - tig0004141:20974-20993 Msa1340380:intergenic 35.0%
GAGTCTCTTAGTTTCTACTA+AGG - tig0004141:21016-21035 Msa1340380:intergenic 35.0%
GTGCCTCAATATTTGATTCT+TGG + tig0004141:21087-21106 Msa1340380:CDS 35.0%
TATCTTAGTGTGATTGGAGT+TGG + tig0004141:21198-21217 Msa1340380:CDS 35.0%
GATCATGTCACAGAAAAGAA+TGG + tig0004141:21255-21274 Msa1340380:CDS 35.0%
!! TGGTAAAAGTTGGATTGGTA+AGG + tig0004141:21275-21294 Msa1340380:CDS 35.0%
!! GTCGTTTGGATAGGTTTTAT+TGG + tig0004141:21310-21329 Msa1340380:CDS 35.0%
CCTCTTTGCTAAGAAAAGAT+AGG - tig0004141:21370-21389 Msa1340380:intergenic 35.0%
! CCTATCTTTTCTTAGCAAAG+AGG + tig0004141:21367-21386 Msa1340380:CDS 35.0%
! ATGGGTTTATGATGGTTCTG+TGG + tig0004141:18122-18141 Msa1340380:CDS 40.0%
! GATGGTTCTGTGGATTGTAA+AGG + tig0004141:18132-18151 Msa1340380:CDS 40.0%
TTCGTGCTAAAACTGGTGTA+TGG + tig0004141:18166-18185 Msa1340380:CDS 40.0%
CTTCATGCATCACCTTTGTA+AGG - tig0004141:18551-18570 Msa1340380:intergenic 40.0%
ACAACCTTGATGCCTCTAAT+AGG + tig0004141:18615-18634 Msa1340380:CDS 40.0%
GCAAGAAATCCACCTATTAG+AGG - tig0004141:18630-18649 Msa1340380:intergenic 40.0%
AGGGAAGAAAATAGGACCAT+AGG - tig0004141:18675-18694 Msa1340380:intergenic 40.0%
TTCGTCAGATGTTAGTTCCT+TGG - tig0004141:18840-18859 Msa1340380:intergenic 40.0%
ATTATGTTGAGCGTCTAAGG+TGG - tig0004141:18872-18891 Msa1340380:intergenic 40.0%
TGGATTATGTTGAGCGTCTA+AGG - tig0004141:18875-18894 Msa1340380:intergenic 40.0%
!! TAGTCTCATAACGGGTTCAA+AGG + tig0004141:19191-19210 Msa1340380:intron 40.0%
!! AGTCTCATAACGGGTTCAAA+GGG + tig0004141:19192-19211 Msa1340380:intron 40.0%
TTGTCAATAGGCTTAATCCC+TGG - tig0004141:19580-19599 Msa1340380:intergenic 40.0%
!! GTGTTGCATGGCTTTAAACT+TGG - tig0004141:19617-19636 Msa1340380:intergenic 40.0%
AGACATGTCTTTGTGTTGCA+TGG - tig0004141:19629-19648 Msa1340380:intergenic 40.0%
ACCCAAGGAGATACAGTAAA+GGG - tig0004141:19690-19709 Msa1340380:intergenic 40.0%
TACCCAAGGAGATACAGTAA+AGG - tig0004141:19691-19710 Msa1340380:intergenic 40.0%
AAACCATGCTTGGAAAGCTT+CGG + tig0004141:19722-19741 Msa1340380:CDS 40.0%
ATGTCCAAGACAATGTTAGC+TGG + tig0004141:19861-19880 Msa1340380:CDS 40.0%
TGTCCAAGACAATGTTAGCT+GGG + tig0004141:19862-19881 Msa1340380:CDS 40.0%
TATAGGTATAGAAGGCCAGA+AGG + tig0004141:19956-19975 Msa1340380:CDS 40.0%
AGGTACTAATTGCTGCCATA+AGG + tig0004141:20002-20021 Msa1340380:CDS 40.0%
ATTGCATAGAAGCCTTCCTT+GGG - tig0004141:20092-20111 Msa1340380:intergenic 40.0%
TATTGCATAGAAGCCTTCCT+TGG - tig0004141:20093-20112 Msa1340380:intergenic 40.0%
TTACGTGAAACCGACATATG+TGG + tig0004141:20201-20220 Msa1340380:intron 40.0%
TATGGTGCCTGCATTTATGT+CGG + tig0004141:20272-20291 Msa1340380:intron 40.0%
! CATTTATGTCGGTGCTTCAT+TGG + tig0004141:20283-20302 Msa1340380:intron 40.0%
AGGCCATCCAGAATAACTTA+TGG - tig0004141:20420-20439 Msa1340380:intergenic 40.0%
ACAGGAATTTGTGTAGCACA+AGG + tig0004141:20751-20770 Msa1340380:CDS 40.0%
! AGCTTGTTTCACAAAGAGTG+TGG - tig0004141:20779-20798 Msa1340380:intergenic 40.0%
! CCAGTGATTTTTCTCAGCAT+TGG - tig0004141:20916-20935 Msa1340380:intergenic 40.0%
CCAATGCTGAGAAAAATCAC+TGG + tig0004141:20913-20932 Msa1340380:CDS 40.0%
! GGTGATTCATTTTCTCTGGT+TGG + tig0004141:21114-21133 Msa1340380:CDS 40.0%
TTCTCATTGAGTCAGGAACT+TGG - tig0004141:21161-21180 Msa1340380:intergenic 40.0%
CTCAATGAGAAGCTTAGGAA+TGG + tig0004141:21170-21189 Msa1340380:CDS 40.0%
! GAGTAGAGATGATGGCATAA+TGG + tig0004141:21448-21467 Msa1340380:CDS 40.0%
GTTCCTCTTCGTGCTAAAAC+TGG + tig0004141:18159-18178 Msa1340380:CDS 45.0%
!! ACACCAGTTTTAGCACGAAG+AGG - tig0004141:18165-18184 Msa1340380:intergenic 45.0%
ACCTTGATGCCTCTAATAGG+TGG + tig0004141:18618-18637 Msa1340380:CDS 45.0%
!! TCCACCTATTAGAGGCATCA+AGG - tig0004141:18622-18641 Msa1340380:intergenic 45.0%
GGTAGACGAGGGAAGAAAAT+AGG - tig0004141:18683-18702 Msa1340380:intergenic 45.0%
TTCTTCCCTCGTCTACCTTA+TGG + tig0004141:18686-18705 Msa1340380:CDS 45.0%
ACGCTCAACATAATCCACGA+TGG + tig0004141:18878-18897 Msa1340380:intron 45.0%
GCACATTTGTCTCAATGCCA+GGG + tig0004141:19560-19579 Msa1340380:intron 45.0%
CAAAGACATGTCTTCAGCCA+AGG + tig0004141:19636-19655 Msa1340380:CDS 45.0%
AGGAGATACAGTAAAGGGCA+AGG - tig0004141:19685-19704 Msa1340380:intergenic 45.0%
TGCCCTTTACTGTATCTCCT+TGG + tig0004141:19685-19704 Msa1340380:CDS 45.0%
GCCCTTTACTGTATCTCCTT+GGG + tig0004141:19686-19705 Msa1340380:CDS 45.0%
TACTGTATCTCCTTGGGTAC+TGG + tig0004141:19692-19711 Msa1340380:CDS 45.0%
GTCCAAGACAATGTTAGCTG+GGG + tig0004141:19863-19882 Msa1340380:CDS 45.0%
CCTTGGGACATATCTGACTT+TGG - tig0004141:20076-20095 Msa1340380:intergenic 45.0%
CCAAAGTCAGATATGTCCCA+AGG + tig0004141:20073-20092 Msa1340380:CDS 45.0%
AGTCAGATATGTCCCAAGGA+AGG + tig0004141:20077-20096 Msa1340380:CDS 45.0%
!!! GTACGTAGCGTTGACACTTT+TGG + tig0004141:20160-20179 Msa1340380:intron 45.0%
!! TGAAGCACCGACATAAATGC+AGG - tig0004141:20282-20301 Msa1340380:intergenic 45.0%
! ATGTCGGTGCTTCATTGGTT+TGG + tig0004141:20288-20307 Msa1340380:intron 45.0%
CCTAAGCTTCTCATTGAGTC+AGG - tig0004141:21168-21187 Msa1340380:intergenic 45.0%
CCTGACTCAATGAGAAGCTT+AGG + tig0004141:21165-21184 Msa1340380:CDS 45.0%
! GAGTGATGGAGTAGAGATGA+TGG + tig0004141:21440-21459 Msa1340380:CDS 45.0%
!!! ATATTATTTTAATAAAACAA+TGG + tig0004141:18275-18294 Msa1340380:intron 5.0%
!!! AAAATTAATAAATTTGTTAA+TGG + tig0004141:19024-19043 Msa1340380:intron 5.0%
CGCACATTTGTCTCAATGCC+AGG + tig0004141:19559-19578 Msa1340380:intron 50.0%
!! TGTATCTCCTTGGGTACTGG+AGG + tig0004141:19695-19714 Msa1340380:CDS 50.0%
TTTGTGTCCTCCAGTACCCA+AGG - tig0004141:19705-19724 Msa1340380:intergenic 50.0%
TGGAGGACACAAACCATGCT+TGG + tig0004141:19712-19731 Msa1340380:CDS 50.0%
CTCCCCAGCTAACATTGTCT+TGG - tig0004141:19868-19887 Msa1340380:intergenic 50.0%
! GTCACTGTTGCTAGTCTCCA+TGG - tig0004141:20670-20689 Msa1340380:intergenic 50.0%
CAGTGGAAACAGAAGCTGGT+GGG - tig0004141:20840-20859 Msa1340380:intergenic 50.0%
GTTTCCACTGCAGCAGCAAT+TGG + tig0004141:20850-20869 Msa1340380:CDS 50.0%
GCTCCGAAGCTTTCCAAGCA+TGG - tig0004141:19728-19747 Msa1340380:intergenic 55.0%
GCAGTGGAAACAGAAGCTGG+TGG - tig0004141:20841-20860 Msa1340380:intergenic 55.0%
GCTGCAGTGGAAACAGAAGC+TGG - tig0004141:20844-20863 Msa1340380:intergenic 55.0%
GGTGCCAATTGCTGCTGCAG+TGG - tig0004141:20857-20876 Msa1340380:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0004141 gene 18052 21571 18052 ID=Msa1340380;Name=Msa1340380
tig0004141 mRNA 18052 21571 18052 ID=Msa1340380-mRNA-1;Parent=Msa1340380;Name=Msa1340380-mRNA-1;_AED=0.05;_eAED=0.05;_QI=20|1|1|1|1|1|4|104|585
tig0004141 exon 18052 18210 18052 ID=Msa1340380-mRNA-1:exon:2600;Parent=Msa1340380-mRNA-1
tig0004141 exon 18490 18707 18490 ID=Msa1340380-mRNA-1:exon:2601;Parent=Msa1340380-mRNA-1
tig0004141 exon 19581 20125 19581 ID=Msa1340380-mRNA-1:exon:2602;Parent=Msa1340380-mRNA-1
tig0004141 exon 20612 21571 20612 ID=Msa1340380-mRNA-1:exon:2603;Parent=Msa1340380-mRNA-1
tig0004141 five_prime_UTR 18052 18071 18052 ID=Msa1340380-mRNA-1:five_prime_utr;Parent=Msa1340380-mRNA-1
tig0004141 CDS 18072 18210 18072 ID=Msa1340380-mRNA-1:cds;Parent=Msa1340380-mRNA-1
tig0004141 CDS 18490 18707 18490 ID=Msa1340380-mRNA-1:cds;Parent=Msa1340380-mRNA-1
tig0004141 CDS 19581 20125 19581 ID=Msa1340380-mRNA-1:cds;Parent=Msa1340380-mRNA-1
tig0004141 CDS 20612 21467 20612 ID=Msa1340380-mRNA-1:cds;Parent=Msa1340380-mRNA-1
tig0004141 three_prime_UTR 21468 21571 21468 ID=Msa1340380-mRNA-1:three_prime_utr;Parent=Msa1340380-mRNA-1
Gene Sequence

>Msa1340380

ATGGAGCAAGAAAAAAAGCAAGGTACAAGAGAAGAAATTGAACAAGAGAAATGGGTTTATGATGGTTCTGTGGATTGTAAAGGCAAAGTTCCTCTTCGTGCTAAAACTGGTGTATGGATAGCTTCTCTCTTTGTCCTTACAATTGAATTTAGTGAAAGGATAAGCTTTTTTGGGATAGCTGCAAATCTTATATCATACCTTACAAAGGTGATGCATGAAGATCTTAAAACTGCAGCAAAGAATGTAAATTATTGGGCAGGAACAACAACCTTGATGCCTCTAATAGGTGGATTTCTTGCTGATGCTTACATTGGTCGATTTCCTATGGTCCTATTTTCTTCCCTCGTCTACCTTATGGGATTAAGCCTATTGACAATGTCTCAGTACATCCCAAGTTTAAAGCCATGCAACACAAAGACATGTCTTCAGCCAAGGAAAATTCATGAAGTTGTTTTCTTCCTTGCCCTTTACTGTATCTCCTTGGGTACTGGAGGACACAAACCATGCTTGGAAAGCTTCGGAGCTGATCAATTCGATGAAGATCACATCGAAGAAAGGAAGAAGAAAATGTCTTTCTTCAACTGGTGGAACTTTGCATTGTGTTTTGCATTGCTTCTTGGTGCAACAGTGATTGTTTATGTCCAAGACAATGTTAGCTGGGGAGCTGCAAGTCTTATTCTCACAATTCTTATGGCTTTATGTATCATAGCTTTTTATGTGGGGAAGACTTTTTATAGGTATAGAAGGCCAGAAGGAAATACTTTAAAACCAATTTTACAGGTACTAATTGCTGCCATAAGGAAAAGGAATTTGGCTTGTCCCTCAAATCCTTCTTTATTGTATGAAGTTCCAAAGTCAGATATGTCCCAAGGAAGGCTTCTATGCAATACTAGCAAACTAAGGTTTCTTGACAAGGCTGCTATAATAGAAGACACACATGTTGATCAAAAACACAATCCATGGAGACTAGCAACAGTGACAAGAGTAGAAGAAACAAAGCTTATTCTCAATATAATTCCCATATGGCTAACTTCATTAACAACAGGAATTTGTGTAGCACAAGGCTCCACACTCTTTGTGAAACAAGCTGCTTCAATGAACTTGAAACTAAGCGACAGTTTCACAATCCCACCAGCTTCTGTTTCCACTGCAGCAGCAATTGGCACCTTAATATCTGTTCCAATATATGACAAGATTATTGTTCCAATGCTGAGAAAAATCACTGGCAATGAAAGAGGAATCAGCATACTTAGGAGAATTTCCATTGGTTTCACATTTTCAGTCATAGTTATGATTGTTGCAGCCTTAGTAGAAACTAAGAGACTCAGAATGAATGAGCAAGAAACAAGTCAAAATACTATGAGTGTGTTTTGGTTAGTGCCTCAATATTTGATTCTTGGTTTTGGTGATTCATTTTCTCTGGTTGGTTTACAAGAGTATTTCTATGACCAAGTTCCTGACTCAATGAGAAGCTTAGGAATGGCATTATATCTTAGTGTGATTGGAGTTGGAAGTTTCCTAAGTAGTTTTTTAATCACTATTGTGGATCATGTCACAGAAAAGAATGGTAAAAGTTGGATTGGTAAGGATATAAATTCTAGTCGTTTGGATAGGTTTTATTGGATGTTAGCAATTATTAATGCTTTGAATTTGTGTGCCTATCTTTTCTTAGCAAAGAGGTATACTTATAAGAGTGTTCAGAAGATAGGTAATGAAATTGATGGTTATAAGAGTGATGGAGTAGAGATGATGGCATAA
Protein sequence

>Msa1340380

MEQEKKQGTREEIEQEKWVYDGSVDCKGKVPLRAKTGVWIASLFVLTIEFSERISFFGIAANLISYLTKVMHEDLKTAAKNVNYWAGTTTLMPLIGGFLADAYIGRFPMVLFSSLVYLMGLSLLTMSQYIPSLKPCNTKTCLQPRKIHEVVFFLALYCISLGTGGHKPCLESFGADQFDEDHIEERKKKMSFFNWWNFALCFALLLGATVIVYVQDNVSWGAASLILTILMALCIIAFYVGKTFYRYRRPEGNTLKPILQVLIAAIRKRNLACPSNPSLLYEVPKSDMSQGRLLCNTSKLRFLDKAAIIEDTHVDQKHNPWRLATVTRVEETKLILNIIPIWLTSLTTGICVAQGSTLFVKQAASMNLKLSDSFTIPPASVSTAAAIGTLISVPIYDKIIVPMLRKITGNERGISILRRISIGFTFSVIVMIVAALVETKRLRMNEQETSQNTMSVFWLVPQYLILGFGDSFSLVGLQEYFYDQVPDSMRSLGMALYLSVIGVGSFLSSFLITIVDHVTEKNGKSWIGKDINSSRLDRFYWMLAIINALNLCAYLFLAKRYTYKSVQKIGNEIDGYKSDGVEMMA*