AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0416110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0416110 MtrunA17_Chr3g0112671 82.906 585 24 3 1 513 1 581 0.0 962
Msa0416110 MtrunA17_Chr3g0112611 59.114 587 161 4 4 511 2 588 0.0 711
Msa0416110 MtrunA17_Chr7g0240381 56.940 562 164 5 11 498 7 564 0.0 649
Msa0416110 MtrunA17_Chr4g0008651 54.003 587 191 7 1 508 1 587 0.0 635
Msa0416110 MtrunA17_Chr3g0112631 84.375 288 38 2 233 513 7 294 1.85e-174 493
Msa0416110 MtrunA17_Chr4g0014871 36.832 543 265 8 21 492 18 553 7.45e-130 389
Msa0416110 MtrunA17_Chr8g0353031 38.654 520 240 9 50 505 62 566 7.95e-127 382
Msa0416110 MtrunA17_Chr7g0241741 37.367 562 270 8 14 494 3 563 2.29e-126 380
Msa0416110 MtrunA17_Chr4g0014841 36.861 548 271 8 13 492 9 549 1.66e-125 377
Msa0416110 MtrunA17_Chr4g0014791 37.163 557 271 8 13 498 9 557 2.87e-125 377
Msa0416110 MtrunA17_Chr4g0014781 36.216 555 267 7 13 492 9 551 3.78e-125 377
Msa0416110 MtrunA17_Chr3g0104011 37.790 561 267 8 14 492 3 563 2.92e-124 375
Msa0416110 MtrunA17_Chr8g0375311 37.241 580 275 10 1 492 4 582 3.26e-124 375
Msa0416110 MtrunA17_Chr3g0077151 37.662 539 258 6 21 492 16 543 3.63e-124 374
Msa0416110 MtrunA17_Chr4g0005901 37.413 572 274 9 6 496 7 575 3.92e-124 375
Msa0416110 MtrunA17_Chr3g0142101 36.957 552 270 5 10 486 12 560 3.94e-122 370
Msa0416110 MtrunA17_Chr1g0187241 35.103 584 286 11 12 513 5 577 5.04e-122 370
Msa0416110 MtrunA17_Chr8g0375291 36.984 557 266 8 11 483 18 573 1.31e-120 366
Msa0416110 MtrunA17_Chr7g0261851 35.714 574 288 8 10 502 5 578 4.27e-119 362
Msa0416110 MtrunA17_Chr8g0375321 36.458 576 281 8 2 493 6 580 5.72e-119 362
Msa0416110 MtrunA17_Chr7g0261771 34.168 559 287 8 15 492 13 571 2.40e-118 361
Msa0416110 MtrunA17_Chr4g0014801 36.116 551 273 8 13 492 9 551 3.06e-118 359
Msa0416110 MtrunA17_Chr7g0261811 34.530 585 294 8 12 507 6 590 4.25e-118 360
Msa0416110 MtrunA17_Chr7g0261881 35.253 573 289 9 12 502 6 578 2.57e-117 358
Msa0416110 MtrunA17_Chr1g0166791 35.765 562 278 10 14 493 5 565 1.13e-116 356
Msa0416110 MtrunA17_Chr8g0375351 35.130 575 288 8 4 494 11 584 7.65e-116 353
Msa0416110 MtrunA17_Chr7g0261791 34.068 590 301 10 1 506 1 586 1.17e-115 354
Msa0416110 MtrunA17_Chr8g0375341 35.304 575 287 8 4 494 11 584 9.37e-115 351
Msa0416110 MtrunA17_Chr1g0166741 36.330 534 260 10 17 473 11 541 2.14e-114 350
Msa0416110 MtrunA17_Chr3g0114501 34.588 558 285 7 15 492 4 561 1.05e-113 348
Msa0416110 MtrunA17_Chr3g0082631 40.465 430 195 4 124 492 30 459 1.94e-112 341
Msa0416110 MtrunA17_Chr8g0375331 36.042 566 277 8 11 492 2 566 2.99e-112 344
Msa0416110 MtrunA17_Chr3g0142091 35.540 574 283 9 10 502 3 570 7.94e-111 340
Msa0416110 MtrunA17_Chr8g0375361 36.945 563 270 8 14 492 20 581 2.59e-110 339
Msa0416110 MtrunA17_Chr1g0166711 36.201 558 274 12 17 493 9 565 6.24e-109 336
Msa0416110 MtrunA17_Chr1g0166771 37.605 476 244 8 50 475 35 507 5.10e-108 332
Msa0416110 MtrunA17_Chr5g0422881 33.333 522 290 5 48 511 62 583 2.39e-103 322
Msa0416110 MtrunA17_Chr4g0014861 37.198 414 216 5 123 492 15 428 6.41e-102 313
Msa0416110 MtrunA17_Chr5g0399061 33.450 571 281 11 14 492 9 572 1.74e-99 311
Msa0416110 MtrunA17_Chr7g0261661 36.152 473 241 9 94 512 1 466 4.10e-99 308
Msa0416110 MtrunA17_Chr5g0415791 34.417 523 281 7 32 492 55 577 1.29e-97 307
Msa0416110 MtrunA17_Chr3g0112651 79.532 171 33 1 93 261 21 191 2.30e-96 290
Msa0416110 MtrunA17_Chr4g0056431 32.487 591 298 9 9 507 7 588 1.18e-94 299
Msa0416110 MtrunA17_Chr1g0213711 32.604 503 287 5 51 502 66 567 1.24e-93 296
Msa0416110 MtrunA17_Chr5g0400371 31.787 582 306 11 2 495 81 659 1.33e-93 298
Msa0416110 MtrunA17_Chr1g0166731 37.143 455 231 8 93 493 9 462 1.07e-92 290
Msa0416110 MtrunA17_Chr7g0217461 32.353 578 299 12 14 502 5 579 2.56e-92 293
Msa0416110 MtrunA17_Chr4g0054891 31.625 566 300 12 6 487 84 646 9.94e-92 293
Msa0416110 MtrunA17_Chr6g0451841 34.800 500 267 8 46 493 45 537 2.79e-91 289
Msa0416110 MtrunA17_Chr8g0362781 32.129 526 292 7 38 498 62 587 2.12e-90 288
Msa0416110 MtrunA17_Chr2g0284701 31.438 598 311 11 4 503 2 598 1.06e-89 286
Msa0416110 MtrunA17_Chr7g0255621 30.473 571 333 9 1 508 14 583 1.35e-89 286
Msa0416110 MtrunA17_Chr5g0399071 33.039 566 288 12 15 492 8 570 1.75e-88 283
Msa0416110 MtrunA17_Chr7g0271221 33.465 508 286 9 46 506 57 559 5.67e-88 281
Msa0416110 MtrunA17_Chr4g0059991 30.783 549 310 9 28 511 44 587 2.45e-87 280
Msa0416110 MtrunA17_Chr7g0255611 31.373 510 291 5 46 496 69 578 3.83e-87 280
Msa0416110 MtrunA17_Chr7g0255601 32.806 506 281 5 46 492 67 572 4.46e-87 280
Msa0416110 MtrunA17_Chr5g0415961 33.105 583 288 13 1 492 1 572 5.28e-87 279
Msa0416110 MtrunA17_Chr2g0276751 32.653 490 283 9 46 492 78 563 8.32e-87 278
Msa0416110 MtrunA17_Chr7g0214461 29.941 511 303 8 51 509 123 630 1.22e-85 276
Msa0416110 MtrunA17_Chr8g0362711 32.258 589 297 12 1 500 1 576 1.80e-85 275
Msa0416110 MtrunA17_Chr4g0059971 28.369 564 332 9 1 492 21 584 2.12e-85 275
Msa0416110 MtrunA17_Chr1g0193391 31.213 503 291 8 46 499 57 553 3.15e-85 275
Msa0416110 MtrunA17_Chr5g0439381 31.707 574 302 16 14 510 9 569 3.59e-84 271
Msa0416110 MtrunA17_Chr4g0069581 32.985 479 268 8 64 493 44 518 1.77e-83 269
Msa0416110 MtrunA17_Chr4g0059981 29.301 529 310 6 38 502 63 591 1.09e-80 263
Msa0416110 MtrunA17_Chr7g0218851 30.894 492 286 7 51 489 91 581 4.94e-79 258
Msa0416110 MtrunA17_Chr7g0214731 28.596 570 311 12 34 510 62 628 9.44e-79 259
Msa0416110 MtrunA17_Chr8g0362801 30.803 461 257 6 96 494 3 463 2.35e-76 248
Msa0416110 MtrunA17_Chr7g0240271 28.843 527 312 9 32 496 50 575 4.88e-76 250
Msa0416110 MtrunA17_Chr4g0060001 30.178 507 291 10 40 489 69 569 9.17e-76 250
Msa0416110 MtrunA17_Chr4g0063591 31.239 573 311 10 14 506 3 572 2.43e-74 245
Msa0416110 MtrunA17_Chr4g0011471 30.181 497 288 7 51 489 61 556 3.69e-74 245
Msa0416110 MtrunA17_Chr5g0415841 30.283 459 258 7 96 493 3 460 4.64e-74 242
Msa0416110 MtrunA17_Chr4g0011041 27.979 579 326 13 1 489 1 578 1.21e-73 244
Msa0416110 MtrunA17_Chr7g0240281 30.250 519 297 10 56 510 74 591 1.68e-73 244
Msa0416110 MtrunA17_Chr3g0133341 31.407 519 292 11 46 505 54 567 8.61e-73 241
Msa0416110 MtrunA17_Chr8g0390331 28.246 570 334 14 1 502 5 567 8.67e-70 233
Msa0416110 MtrunA17_Chr3g0142121 43.701 254 138 2 233 486 14 262 2.82e-68 221
Msa0416110 MtrunA17_Chr1g0157601 27.108 498 302 7 50 489 59 553 4.90e-68 228
Msa0416110 MtrunA17_Chr1g0147631 29.320 515 288 11 58 507 77 580 9.20e-68 228
Msa0416110 MtrunA17_Chr7g0234381 32.710 428 249 7 91 489 1 418 1.14e-67 223
Msa0416110 MtrunA17_Chr7g0234181 33.412 425 240 9 96 489 1 413 1.47e-67 223
Msa0416110 MtrunA17_Chr2g0326211 29.923 518 283 11 38 494 51 549 1.63e-66 224
Msa0416110 MtrunA17_Chr2g0331521 29.020 510 300 13 51 500 67 574 2.62e-66 224
Msa0416110 MtrunA17_Chr4g0003761 28.221 489 289 10 60 489 84 569 1.60e-65 223
Msa0416110 MtrunA17_Chr7g0235521 28.879 464 268 8 105 507 12 474 8.56e-65 218
Msa0416110 MtrunA17_Chr7g0234151 32.093 430 249 8 91 489 1 418 1.66e-64 215
Msa0416110 MtrunA17_Chr2g0331471 30.081 492 280 12 59 489 141 629 2.01e-64 222
Msa0416110 MtrunA17_Chr2g0331511 27.358 530 319 11 44 510 59 585 9.27e-64 219
Msa0416110 MtrunA17_Chr7g0240181 28.879 464 268 8 105 507 12 474 1.16e-63 214
Msa0416110 MtrunA17_Chr7g0240211 28.879 464 268 8 105 507 12 474 1.29e-63 214
Msa0416110 MtrunA17_Chr2g0331481 29.268 492 284 11 59 489 78 566 1.29e-63 218
Msa0416110 MtrunA17_Chr2g0325961 30.255 509 280 11 46 494 57 550 5.68e-63 214
Msa0416110 MtrunA17_Chr7g0240131 29.295 454 258 9 105 496 12 464 5.82e-63 213
Msa0416110 MtrunA17_Chr2g0325951 30.116 518 282 13 38 494 51 549 6.50e-63 214
Msa0416110 MtrunA17_Chr1g0157621 27.607 489 294 7 58 489 32 517 1.20e-62 214
Msa0416110 MtrunA17_Chr1g0157611 28.200 500 295 10 50 489 59 554 8.46e-61 209
Msa0416110 MtrunA17_Chr1g0177591 28.125 480 286 10 59 489 95 564 1.80e-59 206
Msa0416110 MtrunA17_Chr7g0261731 32.749 342 155 5 15 281 13 354 1.91e-58 197
Msa0416110 MtrunA17_Chr4g0060071 37.063 286 165 6 220 498 27 304 7.21e-58 194
Msa0416110 MtrunA17_Chr7g0240151 27.430 463 258 8 105 507 12 456 7.50e-57 196
Msa0416110 MtrunA17_Chr2g0331461 26.087 529 321 11 44 507 63 586 1.46e-56 199
Msa0416110 MtrunA17_Chr1g0177611 27.021 433 260 9 106 489 10 435 5.79e-50 177
Msa0416110 MtrunA17_Chr3g0142111 37.786 262 131 3 4 236 20 278 6.62e-50 174
Msa0416110 MtrunA17_Chr7g0261751 35.294 255 132 2 15 236 13 267 9.48e-50 178
Msa0416110 MtrunA17_Chr7g0261751 39.844 128 77 0 249 376 358 485 7.64e-26 110
Msa0416110 MtrunA17_Chr1g0177631 27.021 433 260 9 106 489 10 435 2.80e-48 172
Msa0416110 MtrunA17_Chr8g0379971 34.932 292 171 6 232 507 315 603 6.77e-46 169
Msa0416110 MtrunA17_Chr8g0379971 31.461 267 149 5 15 247 2 268 9.75e-28 117
Msa0416110 MtrunA17_Chr7g0261721 37.563 197 117 3 302 492 5 201 3.33e-45 158
Msa0416110 MtrunA17_Chr8g0379991 36.330 267 159 3 247 502 308 574 3.13e-43 161
Msa0416110 MtrunA17_Chr8g0379991 34.715 193 119 3 48 233 22 214 9.00e-26 110
Msa0416110 MtrunA17_Chr3g0112661 66.667 102 7 1 18 92 16 117 1.14e-36 132
Msa0416110 MtrunA17_Chr2g0326221 31.933 238 131 5 261 494 15 225 4.48e-27 108
Msa0416110 MtrunA17_Chr7g0261831 35.772 123 74 1 219 341 37 154 1.05e-18 84.7
Msa0416110 MtrunA17_Chr4g0060061 36.036 111 71 0 123 233 17 127 1.53e-17 79.3
Msa0416110 MtrunA17_Chr4g0014851 33.645 107 44 1 21 100 18 124 8.94e-16 75.1
Msa0416110 MtrunA17_Chr1g0147581 36.441 118 64 2 354 465 3 115 2.45e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0416110 AT2G37900.1 52.424 557 186 6 14 495 17 569 0.0 602
Msa0416110 AT3G53960.1 50.980 561 196 6 14 495 16 576 0.0 592
Msa0416110 AT2G37900.2 54.970 493 170 5 51 495 2 490 0.0 565
Msa0416110 AT3G54140.1 38.434 562 262 8 14 492 3 563 2.65e-131 393
Msa0416110 AT3G54140.2 38.434 562 262 8 14 492 3 563 2.65e-131 393
Msa0416110 AT3G54450.1 35.603 514 261 3 50 505 54 555 8.32e-126 379
Msa0416110 AT2G40460.1 37.365 554 273 9 18 497 7 560 1.01e-124 377
Msa0416110 AT2G02040.1 37.306 579 275 9 1 492 4 581 2.10e-123 374
Msa0416110 AT5G01180.2 35.839 572 282 9 12 501 2 570 6.76e-122 369
Msa0416110 AT5G01180.3 35.839 572 282 9 12 501 2 570 6.76e-122 369
Msa0416110 AT5G01180.1 35.839 572 282 9 12 501 2 570 6.76e-122 369
Msa0416110 AT1G22540.1 36.044 541 279 9 23 497 18 557 7.10e-119 361
Msa0416110 AT1G62200.1 35.233 579 284 9 1 492 13 587 9.04e-118 359
Msa0416110 AT2G02020.1 36.648 543 291 10 2 494 6 545 3.55e-117 356
Msa0416110 AT1G72125.1 34.892 556 281 9 15 495 10 559 3.91e-116 354
Msa0416110 AT1G72140.1 38.433 536 261 13 23 493 22 553 7.85e-115 350
Msa0416110 AT1G72120.1 35.587 562 280 11 9 496 3 556 1.38e-113 347
Msa0416110 AT1G72130.1 37.983 466 251 6 58 492 75 533 5.27e-112 343
Msa0416110 AT5G46050.1 33.628 565 294 6 9 493 2 565 3.14e-110 339
Msa0416110 AT5G46040.1 33.163 588 298 8 9 505 2 585 5.67e-109 336
Msa0416110 AT1G22550.1 35.986 553 281 8 16 496 12 563 1.66e-107 332
Msa0416110 AT2G02020.2 34.831 534 292 11 2 494 6 524 2.03e-100 312
Msa0416110 AT1G69870.1 33.211 545 305 8 28 513 71 615 4.80e-100 314
Msa0416110 AT1G22570.1 34.286 560 282 10 16 496 12 564 3.19e-99 310
Msa0416110 AT1G22570.2 36.345 498 259 8 51 496 36 527 9.89e-98 305
Msa0416110 AT1G68570.2 35.135 518 275 7 46 502 31 548 1.17e-97 306
Msa0416110 AT1G68570.1 35.135 518 275 6 46 502 61 578 2.13e-97 306
Msa0416110 AT5G46050.2 36.142 451 235 5 96 493 3 453 3.70e-96 300
Msa0416110 AT1G59740.1 32.027 587 312 12 1 503 4 587 1.53e-94 299
Msa0416110 AT1G72130.2 37.284 405 222 5 119 492 12 415 1.06e-93 291
Msa0416110 AT1G72130.3 37.284 405 222 5 119 492 12 415 1.06e-93 291
Msa0416110 AT1G32450.1 31.229 586 309 9 6 500 8 590 2.23e-93 296
Msa0416110 AT5G14940.1 34.531 501 262 12 51 493 50 542 1.02e-91 291
Msa0416110 AT1G27040.2 32.855 557 291 12 16 493 6 558 1.38e-89 285
Msa0416110 AT1G27040.1 32.860 563 295 12 12 493 2 562 1.46e-89 285
Msa0416110 AT1G27040.3 34.714 507 279 9 38 493 25 530 2.46e-87 279
Msa0416110 AT1G18880.1 29.289 577 332 9 1 502 1 576 5.58e-85 274
Msa0416110 AT1G27080.2 31.969 513 282 11 52 507 15 517 6.44e-85 272
Msa0416110 AT1G27080.1 30.912 537 303 11 28 507 34 559 7.71e-85 273
Msa0416110 AT3G01350.1 32.046 518 274 8 51 500 50 557 4.89e-83 268
Msa0416110 AT2G26690.1 32.969 549 285 11 18 486 7 552 1.16e-82 268
Msa0416110 AT3G21670.1 30.797 552 298 11 20 493 14 559 1.10e-81 265
Msa0416110 AT1G12110.1 31.763 573 296 11 25 506 17 585 5.75e-81 263
Msa0416110 AT5G62680.1 30.654 535 303 10 38 507 73 604 1.46e-80 263
Msa0416110 AT3G47960.1 30.492 528 300 8 38 502 91 614 1.51e-80 264
Msa0416110 AT1G33440.1 31.874 571 300 11 1 490 6 568 7.10e-80 261
Msa0416110 AT5G62730.1 30.070 572 300 11 11 495 30 588 1.25e-79 260
Msa0416110 AT2G26690.3 34.694 490 264 10 50 486 21 507 1.30e-79 258
Msa0416110 AT2G26690.2 34.694 490 264 10 50 486 33 519 1.75e-79 258
Msa0416110 AT1G69860.1 31.445 512 298 6 32 493 42 550 4.31e-79 258
Msa0416110 AT5G19640.1 29.817 493 279 7 51 489 102 581 5.67e-79 259
Msa0416110 AT5G62730.2 32.207 503 270 10 51 495 40 529 9.52e-79 256
Msa0416110 AT5G13400.1 28.014 564 313 9 24 495 52 614 9.69e-79 259
Msa0416110 AT4G21680.1 29.735 565 307 9 16 491 9 572 1.12e-78 258
Msa0416110 AT3G25280.1 34.534 472 264 10 50 489 63 521 1.87e-78 255
Msa0416110 AT3G25260.1 34.672 473 254 14 51 489 64 515 2.53e-78 254
Msa0416110 AT5G28470.2 28.759 532 318 10 13 489 28 553 1.26e-75 249
Msa0416110 AT5G28470.1 28.571 532 317 11 13 489 28 551 8.63e-73 241
Msa0416110 AT3G45720.1 29.845 516 288 12 39 495 43 543 2.93e-72 240
Msa0416110 AT3G45660.1 30.518 521 294 10 39 503 45 553 8.85e-72 238
Msa0416110 AT3G45660.3 30.518 521 294 10 39 503 45 553 8.85e-72 238
Msa0416110 AT3G45660.2 30.518 521 294 10 39 503 66 574 1.54e-71 238
Msa0416110 AT3G45650.1 29.630 513 293 10 39 495 46 546 6.79e-71 236
Msa0416110 AT1G52190.1 27.767 515 306 10 58 507 71 584 2.74e-69 233
Msa0416110 AT3G16180.1 28.240 517 308 8 58 512 73 588 2.12e-68 230
Msa0416110 AT3G45680.1 28.244 524 301 10 39 502 44 552 6.93e-68 228
Msa0416110 AT3G45710.1 28.911 505 292 9 51 502 64 554 7.76e-66 223
Msa0416110 AT3G45650.2 28.200 539 293 11 39 495 46 572 2.99e-65 222
Msa0416110 AT3G45700.1 28.185 518 303 11 39 502 40 542 1.28e-61 211
Msa0416110 AT5G11570.1 28.859 447 284 11 51 489 56 476 9.51e-61 207
Msa0416110 AT1G62200.2 39.924 263 151 4 233 492 358 616 4.37e-59 206
Msa0416110 AT1G62200.2 36.264 273 137 4 1 236 13 285 2.11e-49 179
Msa0416110 AT1G62200.3 39.924 263 151 4 233 492 372 630 5.31e-59 206
Msa0416110 AT1G62200.3 36.264 273 137 4 1 236 27 299 2.08e-49 180
Msa0416110 AT1G69850.1 42.339 248 135 5 253 493 334 580 5.01e-55 194
Msa0416110 AT1G69850.1 31.873 251 142 3 12 233 2 252 1.75e-26 113
Msa0416110 AT3G45690.1 26.820 522 280 15 39 507 42 514 1.60e-52 186
Msa0416110 AT2G38100.2 27.291 502 280 13 46 490 12 485 1.70e-37 144
Msa0416110 AT2G38100.1 26.990 515 286 14 38 490 15 501 2.28e-37 144
Msa0416110 AT2G38100.3 27.291 502 280 13 46 490 34 507 3.39e-37 144

Find 87 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCTTTCATTTGTAAATA+TGG 0.129027 3_2:-62791620 Msa0416110:exon
GTGCCTCAATATTTGATTCT+TGG 0.195808 3_2:-62788589 Msa0416110:CDS
CAGCAAAGAATGTAAATTAT+TGG 0.229518 3_2:-62791093 Msa0416110:CDS
GCAATTAGTACCTGTAAAAT+TGG 0.231196 3_2:+62789684 None:intergenic
GGCCTTCTATACCTATAAAA+AGG 0.238770 3_2:+62789726 None:intergenic
TCTTATTCTCACAATTCTTA+TGG 0.244786 3_2:-62789781 Msa0416110:CDS
ACAATAATCTTGTCATATAT+TGG 0.283281 3_2:+62788787 None:intergenic
TTCTTCCCTCGTCTACCTTA+TGG 0.292882 3_2:-62790990 Msa0416110:intron
AAGAAATTGAACAAGAGAAA+TGG 0.294015 3_2:-62791570 Msa0416110:CDS
CAATATTTGATTCTTGGCTT+TGG 0.317321 3_2:-62788583 Msa0416110:CDS
GGTAGACGAGGGAAGAAAAT+AGG 0.330508 3_2:+62790996 None:intergenic
TGCCCTTTACTGTATCTCCT+TGG 0.335755 3_2:-62789991 Msa0416110:CDS
TACTGTATCTCCTTGGGTAC+TGG 0.340147 3_2:-62789984 Msa0416110:CDS
ACAACCTTGATGCCTCTAAT+AGG 0.341482 3_2:-62791061 Msa0416110:CDS
GCTTTATATCTTAGTGTGAT+TGG 0.343450 3_2:-62788484 Msa0416110:CDS
AGAAAATGTCTTTCTTCAAC+TGG 0.350438 3_2:-62789890 Msa0416110:CDS
ATATATTGGAACAGATATTA+AGG 0.351984 3_2:+62788801 None:intergenic
AAAATACTATGAGTGTGTTT+TGG 0.359634 3_2:-62788615 Msa0416110:CDS
GCCCTTTACTGTATCTCCTT+GGG 0.365199 3_2:-62789990 Msa0416110:CDS
GGATATAAATTCAAGTCGTT+TGG 0.371413 3_2:-62788380 Msa0416110:CDS
AGAAATTGAACAAGAGAAAT+GGG 0.372263 3_2:-62791569 Msa0416110:CDS
AGCAAAGAATGTAAATTATT+GGG 0.392590 3_2:-62791092 Msa0416110:CDS
GTTCCTCTTCGTGCTAAAAC+TGG 0.398492 3_2:-62791514 Msa0416110:CDS
GCAAGAAATCCACCTATTAG+AGG 0.418901 3_2:+62791049 None:intergenic
CCTAAGCTTCTCATTGAGTC+AGG 0.427299 3_2:+62788511 None:intergenic
GTCACTGTTGCTAATCTCCA+TGG 0.434596 3_2:+62789009 None:intergenic
TTCTCAATATAATTCCCATA+TGG 0.437323 3_2:-62788963 Msa0416110:CDS
TATCTTAGTGTGATTGGAGT+TGG 0.441851 3_2:-62788478 Msa0416110:CDS
CAGAAAAGAATGGTAAAAGT+TGG 0.444018 3_2:-62788411 Msa0416110:CDS
TGTTAGTGAAGTTAGCCATA+TGG 0.447062 3_2:+62788948 None:intergenic
CCTGACTCAATGAGAAGCTT+AGG 0.449986 3_2:-62788511 Msa0416110:CDS
GTTAGTGAAGTTAGCCATAT+GGG 0.454569 3_2:+62788949 None:intergenic
TTCTCATTGAGTCAGGAACT+TGG 0.455125 3_2:+62788518 None:intergenic
GTGTTGCATGGCTTTAAACT+TGG 0.456231 3_2:+62790062 None:intergenic
TGGCTAACTTCACTAACAAC+AGG 0.467411 3_2:-62788943 Msa0416110:CDS
AGACATGTCTTTGTGTTGCA+TGG 0.467743 3_2:+62790050 None:intergenic
CTCCCCAGCTAACATTGTCT+TGG 0.472559 3_2:+62789811 None:intergenic
ATGTCCAAGACAATGTTAGC+TGG 0.472623 3_2:-62789815 Msa0416110:CDS
TTCGTGCTAAAACTGGTGTA+TGG 0.476615 3_2:-62791507 Msa0416110:CDS
TGTTTCCACTGCAGCAGCAA+TGG 0.480362 3_2:-62788827 Msa0416110:CDS
AAGAATGGTAAAAGTTGGAT+TGG 0.482862 3_2:-62788406 Msa0416110:CDS
GTTTCCACTGCAGCAGCAAT+GGG 0.489202 3_2:-62788826 Msa0416110:CDS
GAGTGATGGAGTAGAGATGA+TGG 0.490797 3_2:-62788236 Msa0416110:CDS
TTACATTGGTCGATTTCCTA+TGG 0.492235 3_2:-62791020 Msa0416110:CDS
TAAATTCAAGTCGTTTGGAT+AGG 0.502180 3_2:-62788375 Msa0416110:CDS
GCTCCGAAGCTTTCCAAGCA+TGG 0.502836 3_2:+62789951 None:intergenic
AAACCATGCTTGGAAAGCTT+CGG 0.508863 3_2:-62789954 Msa0416110:CDS
TGGTAAAAGTTGGATTGGTA+AGG 0.510712 3_2:-62788401 Msa0416110:CDS
AGGACAGGTAATGAAATTGA+TGG 0.511081 3_2:-62788265 Msa0416110:CDS
AAGAATGTAAATTATTGGGC+AGG 0.511527 3_2:-62791088 Msa0416110:CDS
ATGAAGATCACATCGAAGAA+AGG 0.519880 3_2:-62789917 Msa0416110:CDS
TGGAGGACACAAACCATGCT+TGG 0.520869 3_2:-62789964 Msa0416110:CDS
ACCCAAGGAGATACAGTAAA+GGG 0.522495 3_2:+62789989 None:intergenic
TGTCCAAGACAATGTTAGCT+GGG 0.526080 3_2:-62789814 Msa0416110:CDS
AAAATCACTGGTAATGAAAG+AGG 0.534562 3_2:-62788751 Msa0416110:CDS
TGTTGCATGGCTTTAAACTT+GGG 0.535408 3_2:+62790063 None:intergenic
ATACTTAGAAGAATTTCCAT+TGG 0.535465 3_2:-62788721 Msa0416110:CDS
TTTCTTGCTGATGCTTACAT+TGG 0.537325 3_2:-62791034 Msa0416110:CDS
CAAGAGAAATGGGTTTCTGA+TGG 0.538134 3_2:-62791559 Msa0416110:CDS
AAATGTCTTTCTTCAACTGG+TGG 0.538171 3_2:-62789887 Msa0416110:CDS
AGGGAAGAAAATAGGACCAT+AGG 0.546416 3_2:+62791004 None:intergenic
TCCACCTATTAGAGGCATCA+AGG 0.552119 3_2:+62791057 None:intergenic
AAGCCAAGAATCAAATATTG+AGG 0.554415 3_2:+62788586 None:intergenic
TATAAGAGTGTACAAAGGAC+AGG 0.565963 3_2:-62788280 Msa0416110:CDS
GACTGAAAATGTGAAGCCAA+TGG 0.572621 3_2:+62788705 None:intergenic
TATAGGTATAGAAGGCCAGA+AGG 0.580744 3_2:-62789720 Msa0416110:CDS
CAAAGACATGTCTTCAGCCA+AGG 0.583646 3_2:-62790040 Msa0416110:CDS
TACCCAAGGAGATACAGTAA+AGG 0.586654 3_2:+62789988 None:intergenic
ATTGATGGTTATAAGAGTGA+TGG 0.587797 3_2:-62788250 Msa0416110:CDS
GATGGTTCTGTGGATTGTAA+AGG 0.589974 3_2:-62791541 Msa0416110:CDS
CTCAATGAGAAGCTTAGGAA+TGG 0.590473 3_2:-62788506 Msa0416110:CDS
AGGAGATACAGTAAAGGGCA+AGG 0.594151 3_2:+62789994 None:intergenic
ATGGGTTTCTGATGGTTCTG+TGG 0.599995 3_2:-62791551 Msa0416110:CDS
GGTGCCCATTGCTGCTGCAG+TGG 0.605942 3_2:+62788822 None:intergenic
ACCTTGATGCCTCTAATAGG+TGG 0.607038 3_2:-62791058 Msa0416110:CDS
GCTGCAGTGGAAACAGAAGC+TGG 0.609413 3_2:+62788835 None:intergenic
CAGTGGAAACAGAAGCTGGT+GGG 0.617373 3_2:+62788839 None:intergenic
GATCATGTGACAGAAAAGAA+TGG 0.626267 3_2:-62788421 Msa0416110:CDS
TGTATCTCCTTGGGTACTGG+AGG 0.630555 3_2:-62789981 Msa0416110:CDS
TTTGTGTCCTCCAGTACCCA+AGG 0.635719 3_2:+62789974 None:intergenic
TATTTACCATAAGGTAGACG+AGG 0.648313 3_2:+62790984 None:intergenic
GTCCAAGACAATGTTAGCTG+GGG 0.649640 3_2:-62789813 Msa0416110:CDS
ACAGGAATATGTGTAGCACA+AGG 0.653977 3_2:-62788925 Msa0416110:CDS
ATTTACCATAAGGTAGACGA+GGG 0.679090 3_2:+62790985 None:intergenic
CAGGAATATGTGTAGCACAA+GGG 0.711286 3_2:-62788924 Msa0416110:CDS
ATACTTATAAGAGTGTACAA+AGG 0.729200 3_2:-62788285 Msa0416110:CDS
GCAGTGGAAACAGAAGCTGG+TGG 0.745161 3_2:+62788838 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAACTAG+TGG + chr3_2:62789515-62789534 None:intergenic 10.0%
!! TACAAAAAATATTTACCATA+AGG + chr3_2:62788880-62788899 None:intergenic 15.0%
!!! GCATTTTTTTACTTAAAAAT+TGG - chr3_2:62788910-62788929 Msa0416110:CDS 15.0%
!!! TTTTACTTAAAAATTGGAAA+TGG - chr3_2:62788916-62788935 Msa0416110:CDS 15.0%
!! TTTACTTAAAAATTGGAAAT+GGG - chr3_2:62788917-62788936 Msa0416110:CDS 15.0%
!! AAAATAGTATTAGTTAAAGT+AGG - chr3_2:62788942-62788961 Msa0416110:CDS 15.0%
!! CATGATAAAAAATTAATGTT+CGG - chr3_2:62789128-62789147 Msa0416110:intron 15.0%
!!! ATATGATTAATTTTGTAAAC+TGG + chr3_2:62789231-62789250 None:intergenic 15.0%
!!! TTCACTTTTTTTAAAATAAG+GGG + chr3_2:62789458-62789477 None:intergenic 15.0%
!!! CTTCACTTTTTTTAAAATAA+GGG + chr3_2:62789459-62789478 None:intergenic 15.0%
!!! ACTTCACTTTTTTTAAAATA+AGG + chr3_2:62789460-62789479 None:intergenic 15.0%
!!! CAAAACTGATTTTTATAATA+AGG + chr3_2:62789490-62789509 None:intergenic 15.0%
!!! CTTATTATAAAAATCAGTTT+TGG - chr3_2:62789488-62789507 Msa0416110:intron 15.0%
!!! TTCATTTTGTAAATTATTGT+TGG - chr3_2:62790414-62790433 Msa0416110:intron 15.0%
!! ATCTCTTTCATTTGTAAATA+TGG - chr3_2:62788232-62788251 Msa0416110:CDS 20.0%
!! ATTAACATAATCATCAAGTA+GGG + chr3_2:62788631-62788650 None:intergenic 20.0%
!! AATTAACATAATCATCAAGT+AGG + chr3_2:62788632-62788651 None:intergenic 20.0%
!! TGATTATGTTAATTTCTATG+TGG - chr3_2:62788638-62788657 Msa0416110:CDS 20.0%
!! AGCAAAGAATGTAAATTATT+GGG - chr3_2:62788760-62788779 Msa0416110:CDS 20.0%
!! TAAAAAATTAATGTTCGGTT+AGG - chr3_2:62789133-62789152 Msa0416110:intron 20.0%
!!! GTTAGGTTTTCTATATAAAT+AGG - chr3_2:62789150-62789169 Msa0416110:intron 20.0%
!!! TTTAAAGGATTTAAGTTGTA+GGG - chr3_2:62789385-62789404 Msa0416110:intron 20.0%
!!! GATTTTTAGTAAAAGTAACA+AGG + chr3_2:62789412-62789431 None:intergenic 20.0%
!! TGTTTGTTTAAATCCATATT+TGG + chr3_2:62789678-62789697 None:intergenic 20.0%
!!! TACTTTAAAACCAATTTTAC+AGG - chr3_2:62790158-62790177 Msa0416110:intron 20.0%
!! TACAATAAATCATGATTTGA+AGG + chr3_2:62790222-62790241 None:intergenic 20.0%
!! GGAAAAACAATTTAATTAAG+TGG + chr3_2:62790726-62790745 None:intergenic 20.0%
!! GTTCATTTATCTAAAGAATA+AGG + chr3_2:62790766-62790785 None:intergenic 20.0%
!! TATTCTTTAGATAAATGAAC+AGG - chr3_2:62790766-62790785 Msa0416110:intron 20.0%
!! ATATATTGGAACAGATATTA+AGG + chr3_2:62791054-62791073 None:intergenic 20.0%
!! ACAATAATCTTGTCATATAT+TGG + chr3_2:62791068-62791087 None:intergenic 20.0%
!! TAGTGATTAAAAAACTACTT+AGG + chr3_2:62791406-62791425 None:intergenic 20.0%
!!! TAGTTTTTTAATCACTATTG+TGG - chr3_2:62791409-62791428 Msa0416110:intron 20.0%
! AAGAAATTGAACAAGAGAAA+TGG - chr3_2:62788282-62788301 Msa0416110:CDS 25.0%
! AGAAATTGAACAAGAGAAAT+GGG - chr3_2:62788283-62788302 Msa0416110:CDS 25.0%
! TCTTATATCATACCTTACTA+AGG - chr3_2:62788712-62788731 Msa0416110:CDS 25.0%
! CAGCAAAGAATGTAAATTAT+TGG - chr3_2:62788759-62788778 Msa0416110:CDS 25.0%
! TGATCATTCTACTAATTTCT+TGG - chr3_2:62788970-62788989 Msa0416110:CDS 25.0%
! AATTAGTCAATGTTAACATG+TGG - chr3_2:62789086-62789105 Msa0416110:intron 25.0%
!!! TTTACACTTGATAATGTCTT+TGG - chr3_2:62789295-62789314 Msa0416110:intron 25.0%
!!! GTTTAAAGGATTTAAGTTGT+AGG - chr3_2:62789384-62789403 Msa0416110:intron 25.0%
!! TATCATCTATGTCACATTTT+AGG - chr3_2:62789545-62789564 Msa0416110:intron 25.0%
! ATTCCAGAAAGACAAAAAAA+AGG + chr3_2:62789624-62789643 None:intergenic 25.0%
! ATTCAATGTAGCACATAAAT+CGG - chr3_2:62789648-62789667 Msa0416110:intron 25.0%
! TCTTATTCTCACAATTCTTA+TGG - chr3_2:62790071-62790090 Msa0416110:CDS 25.0%
!! ATGTATCATAGCTTTTTATG+TGG - chr3_2:62790098-62790117 Msa0416110:CDS 25.0%
!! TGTATCATAGCTTTTTATGT+GGG - chr3_2:62790099-62790118 Msa0416110:intron 25.0%
! TTAAATGTAACCACATATGT+CGG + chr3_2:62790390-62790409 None:intergenic 25.0%
!! AGACTATTTCAGTGATTTTA+TGG - chr3_2:62790528-62790547 Msa0416110:intron 25.0%
! CATATATCCATAAGTTATTC+TGG - chr3_2:62790586-62790605 Msa0416110:intron 25.0%
!!! AAACTATAAGCTATTTTCAC+AGG + chr3_2:62790616-62790635 None:intergenic 25.0%
! TTCTCAATATAATTCCCATA+TGG - chr3_2:62790889-62790908 Msa0416110:intron 25.0%
! ATACTTAGAAGAATTTCCAT+TGG - chr3_2:62791131-62791150 Msa0416110:intron 25.0%
!! AAAATACTATGAGTGTGTTT+TGG - chr3_2:62791237-62791256 Msa0416110:intron 25.0%
!! ATACTTATAAGAGTGTACAA+AGG - chr3_2:62791567-62791586 Msa0416110:CDS 25.0%
CACAAGTAGATATCTTACTA+AGG + chr3_2:62788388-62788407 None:intergenic 30.0%
CAACTCGACTCAATAAAAAT+TGG + chr3_2:62788570-62788589 None:intergenic 30.0%
CAGCAATTGAATTTAGTGAA+AGG - chr3_2:62788663-62788682 Msa0416110:CDS 30.0%
!!! AGTGAAAGGATAAGCTTTTT+TGG - chr3_2:62788677-62788696 Msa0416110:CDS 30.0%
!!! GTGAAAGGATAAGCTTTTTT+GGG - chr3_2:62788678-62788697 Msa0416110:CDS 30.0%
AAGAATGTAAATTATTGGGC+AGG - chr3_2:62788764-62788783 Msa0416110:CDS 30.0%
AAATTTGAATTCTGTCACCA+AGG - chr3_2:62788996-62789015 Msa0416110:CDS 30.0%
TAATTATCTAATCTCCATCG+TGG + chr3_2:62789071-62789090 None:intergenic 30.0%
!!! TAGCCTTTTTTTTGTCTTTC+TGG - chr3_2:62789618-62789637 Msa0416110:intron 30.0%
ATAAATCGGATGACCAAATA+TGG - chr3_2:62789662-62789681 Msa0416110:intron 30.0%
! ACAACTTCATGAATTTTCCT+TGG + chr3_2:62789832-62789851 None:intergenic 30.0%
AGAAAATGTCTTTCTTCAAC+TGG - chr3_2:62789962-62789981 Msa0416110:CDS 30.0%
! GTATCATAGCTTTTTATGTG+GGG - chr3_2:62790100-62790119 Msa0416110:intron 30.0%
! AGCCTTTTTATAGGTATAGA+AGG - chr3_2:62790124-62790143 Msa0416110:intron 30.0%
!!! GGTTTTAAAGTATTTCCTTC+TGG + chr3_2:62790150-62790169 None:intergenic 30.0%
GCAATTAGTACCTGTAAAAT+TGG + chr3_2:62790171-62790190 None:intergenic 30.0%
TATGCAATACTAGCAAACTA+AGG - chr3_2:62790280-62790299 Msa0416110:intron 30.0%
TATCCATAAGTTATTCTGGA+TGG - chr3_2:62790590-62790609 Msa0416110:intron 30.0%
! TGTTTTTCCAATAACATGAG+TGG - chr3_2:62790737-62790756 Msa0416110:intron 30.0%
TTGATCAAAAACACAATCCA+TGG - chr3_2:62790826-62790845 Msa0416110:intron 30.0%
! AAAATCACTGGTAATGAAAG+AGG - chr3_2:62791101-62791120 Msa0416110:CDS 30.0%
AAGCCAAGAATCAAATATTG+AGG + chr3_2:62791269-62791288 None:intergenic 30.0%
CAATATTTGATTCTTGGCTT+TGG - chr3_2:62791269-62791288 Msa0416110:intron 30.0%
GCTTTATATCTTAGTGTGAT+TGG - chr3_2:62791368-62791387 Msa0416110:intron 30.0%
CAGAAAAGAATGGTAAAAGT+TGG - chr3_2:62791441-62791460 Msa0416110:intron 30.0%
AAGAATGGTAAAAGTTGGAT+TGG - chr3_2:62791446-62791465 Msa0416110:intron 30.0%
GGATATAAATTCAAGTCGTT+TGG - chr3_2:62791472-62791491 Msa0416110:intron 30.0%
TAAATTCAAGTCGTTTGGAT+AGG - chr3_2:62791477-62791496 Msa0416110:intron 30.0%
! TTTGTGTGTGTATCTTTTCT+TGG - chr3_2:62791535-62791554 Msa0416110:CDS 30.0%
! ATTGATGGTTATAAGAGTGA+TGG - chr3_2:62791602-62791621 Msa0416110:CDS 30.0%
ATGGAGCAAGAAAAAAAGCA+AGG - chr3_2:62788251-62788270 Msa0416110:CDS 35.0%
TTTCTTGCTGATGCTTACAT+TGG - chr3_2:62788818-62788837 Msa0416110:CDS 35.0%
! TTACATTGGTCGATTTCCTA+TGG - chr3_2:62788832-62788851 Msa0416110:CDS 35.0%
ATTTACCATAAGGTAGACGA+GGG + chr3_2:62788870-62788889 None:intergenic 35.0%
TATTTACCATAAGGTAGACG+AGG + chr3_2:62788871-62788890 None:intergenic 35.0%
TGTTAACATGTGGTGACATT+TGG - chr3_2:62789096-62789115 Msa0416110:intron 35.0%
!! CTCGATGATTAGTCTCATAA+CGG - chr3_2:62789361-62789380 Msa0416110:intron 35.0%
!! TCGATGATTAGTCTCATAAC+GGG - chr3_2:62789362-62789381 Msa0416110:intron 35.0%
!! TAGTCTCATAACGGGTTTAA+AGG - chr3_2:62789370-62789389 Msa0416110:intron 35.0%
TTGTCAATAAGCTTAATCCC+TGG + chr3_2:62789756-62789775 None:intergenic 35.0%
!! TGTTGCATGGCTTTAAACTT+GGG + chr3_2:62789792-62789811 None:intergenic 35.0%
ATGAAGATCACATCGAAGAA+AGG - chr3_2:62789935-62789954 Msa0416110:CDS 35.0%
AAATGTCTTTCTTCAACTGG+TGG - chr3_2:62789965-62789984 Msa0416110:CDS 35.0%
! TTGTGTTTTGCATTGCTTCT+TGG - chr3_2:62789997-62790016 Msa0416110:CDS 35.0%
GGCCTTCTATACCTATAAAA+AGG + chr3_2:62790129-62790148 None:intergenic 35.0%
TAATTGCTGCCATAAGGAAA+AGG - chr3_2:62790184-62790203 Msa0416110:intron 35.0%
TGCCATAAGGAAAAGGAATT+TGG - chr3_2:62790191-62790210 Msa0416110:intron 35.0%
! AGCCAAATTCCTTTTCCTTA+TGG + chr3_2:62790196-62790215 None:intergenic 35.0%
!! TTGTTGGTGTCAATGTTGTA+TGG - chr3_2:62790430-62790449 Msa0416110:intron 35.0%
! CACTGAAATAGTCTTAGAAG+TGG + chr3_2:62790522-62790541 None:intergenic 35.0%
AAGGTAACCACTCATGTTAT+TGG + chr3_2:62790747-62790766 None:intergenic 35.0%
AATGAACAGGTTTCTTGACA+AGG - chr3_2:62790779-62790798 Msa0416110:intron 35.0%
GTTAGTGAAGTTAGCCATAT+GGG + chr3_2:62790906-62790925 None:intergenic 35.0%
TGTTAGTGAAGTTAGCCATA+TGG + chr3_2:62790907-62790926 None:intergenic 35.0%
!!! AGCTTGTTTTACAAAGAGTG+TGG + chr3_2:62790955-62790974 None:intergenic 35.0%
GTGCCTCAATATTTGATTCT+TGG - chr3_2:62791263-62791282 Msa0416110:intron 35.0%
! GGTGATTCATTTTCTCTTGT+TGG - chr3_2:62791290-62791309 Msa0416110:intron 35.0%
TATCTTAGTGTGATTGGAGT+TGG - chr3_2:62791374-62791393 Msa0416110:intron 35.0%
GATCATGTGACAGAAAAGAA+TGG - chr3_2:62791431-62791450 Msa0416110:intron 35.0%
!! TGGTAAAAGTTGGATTGGTA+AGG - chr3_2:62791451-62791470 Msa0416110:intron 35.0%
!! GTCGTTTGGATAGGTTTTAT+TGG - chr3_2:62791486-62791505 Msa0416110:CDS 35.0%
!!! GGATAGGTTTTATTGGATGT+TGG - chr3_2:62791493-62791512 Msa0416110:CDS 35.0%
! TGTATCTTTTCTTGGCAAAG+AGG - chr3_2:62791543-62791562 Msa0416110:CDS 35.0%
! TATAAGAGTGTACAAAGGAC+AGG - chr3_2:62791572-62791591 Msa0416110:CDS 35.0%
AGGACAGGTAATGAAATTGA+TGG - chr3_2:62791587-62791606 Msa0416110:CDS 35.0%
! CAAGAGAAATGGGTTTCTGA+TGG - chr3_2:62788293-62788312 Msa0416110:CDS 40.0%
! GATGGTTCTGTGGATTGTAA+AGG - chr3_2:62788311-62788330 Msa0416110:CDS 40.0%
TTCGTGCTAAAACTGGTGTA+TGG - chr3_2:62788345-62788364 Msa0416110:CDS 40.0%
CTTCATGCATCACCTTAGTA+AGG + chr3_2:62788727-62788746 None:intergenic 40.0%
ACAACCTTGATGCCTCTAAT+AGG - chr3_2:62788791-62788810 Msa0416110:CDS 40.0%
GCAAGAAATCCACCTATTAG+AGG + chr3_2:62788806-62788825 None:intergenic 40.0%
AGGGAAGAAAATAGGACCAT+AGG + chr3_2:62788851-62788870 None:intergenic 40.0%
TTCGTCAGATGTTAGTTCCT+TGG + chr3_2:62789016-62789035 None:intergenic 40.0%
ATTATGTCGAACGTCTAAGG+TGG + chr3_2:62789048-62789067 None:intergenic 40.0%
TGGATTATGTCGAACGTCTA+AGG + chr3_2:62789051-62789070 None:intergenic 40.0%
!! GTGTTGCATGGCTTTAAACT+TGG + chr3_2:62789793-62789812 None:intergenic 40.0%
AGACATGTCTTTGTGTTGCA+TGG + chr3_2:62789805-62789824 None:intergenic 40.0%
ACCCAAGGAGATACAGTAAA+GGG + chr3_2:62789866-62789885 None:intergenic 40.0%
TACCCAAGGAGATACAGTAA+AGG + chr3_2:62789867-62789886 None:intergenic 40.0%
AAACCATGCTTGGAAAGCTT+CGG - chr3_2:62789898-62789917 Msa0416110:CDS 40.0%
ATGTCCAAGACAATGTTAGC+TGG - chr3_2:62790037-62790056 Msa0416110:CDS 40.0%
TGTCCAAGACAATGTTAGCT+GGG - chr3_2:62790038-62790057 Msa0416110:CDS 40.0%
! ATGTGGGGAAGCCTTTTTAT+AGG - chr3_2:62790115-62790134 Msa0416110:intron 40.0%
TATAGGTATAGAAGGCCAGA+AGG - chr3_2:62790132-62790151 Msa0416110:intron 40.0%
AGGTACTAATTGCTGCCATA+AGG - chr3_2:62790178-62790197 Msa0416110:intron 40.0%
CCTTGGAACTTATCTGACTT+TGG + chr3_2:62790252-62790271 None:intergenic 40.0%
CCAAAGTCAGATAAGTTCCA+AGG - chr3_2:62790249-62790268 Msa0416110:intron 40.0%
AGTCAGATAAGTTCCAAGGA+AGG - chr3_2:62790253-62790272 Msa0416110:intron 40.0%
TATTGCATAGAAGCCTTCCT+TGG + chr3_2:62790269-62790288 None:intergenic 40.0%
TTACGTGAAACCGACATATG+TGG - chr3_2:62790377-62790396 Msa0416110:intron 40.0%
TATGGTGCCTGCATTTATGT+CGG - chr3_2:62790448-62790467 Msa0416110:intron 40.0%
! CATTTATGTCGGTGCTTCAT+TGG - chr3_2:62790459-62790478 Msa0416110:intron 40.0%
AGGCCATCCAGAATAACTTA+TGG + chr3_2:62790596-62790615 None:intergenic 40.0%
TGGCTAACTTCACTAACAAC+AGG - chr3_2:62790909-62790928 Msa0416110:intron 40.0%
ACAGGAATATGTGTAGCACA+AGG - chr3_2:62790927-62790946 Msa0416110:intron 40.0%
CAGGAATATGTGTAGCACAA+GGG - chr3_2:62790928-62790947 Msa0416110:intron 40.0%
! CCAGTGATTTTTCTCAGCAT+TGG + chr3_2:62791092-62791111 None:intergenic 40.0%
CCAATGCTGAGAAAAATCAC+TGG - chr3_2:62791089-62791108 Msa0416110:CDS 40.0%
GACTGAAAATGTGAAGCCAA+TGG + chr3_2:62791150-62791169 None:intergenic 40.0%
TTCTCATTGAGTCAGGAACT+TGG + chr3_2:62791337-62791356 None:intergenic 40.0%
CTCAATGAGAAGCTTAGGAA+TGG - chr3_2:62791346-62791365 Msa0416110:intron 40.0%
! ATGGGTTTCTGATGGTTCTG+TGG - chr3_2:62788301-62788320 Msa0416110:CDS 45.0%
GTTCCTCTTCGTGCTAAAAC+TGG - chr3_2:62788338-62788357 Msa0416110:CDS 45.0%
!! ACACCAGTTTTAGCACGAAG+AGG + chr3_2:62788344-62788363 None:intergenic 45.0%
ACCTTGATGCCTCTAATAGG+TGG - chr3_2:62788794-62788813 Msa0416110:CDS 45.0%
!! TCCACCTATTAGAGGCATCA+AGG + chr3_2:62788798-62788817 None:intergenic 45.0%
GGTAGACGAGGGAAGAAAAT+AGG + chr3_2:62788859-62788878 None:intergenic 45.0%
TTCTTCCCTCGTCTACCTTA+TGG - chr3_2:62788862-62788881 Msa0416110:CDS 45.0%
ACGTTCGACATAATCCACGA+TGG - chr3_2:62789054-62789073 Msa0416110:CDS 45.0%
AGCACATTTGTCTCAATGCC+AGG - chr3_2:62789735-62789754 Msa0416110:CDS 45.0%
GCACATTTGTCTCAATGCCA+GGG - chr3_2:62789736-62789755 Msa0416110:CDS 45.0%
CAAAGACATGTCTTCAGCCA+AGG - chr3_2:62789812-62789831 Msa0416110:CDS 45.0%
AGGAGATACAGTAAAGGGCA+AGG + chr3_2:62789861-62789880 None:intergenic 45.0%
TGCCCTTTACTGTATCTCCT+TGG - chr3_2:62789861-62789880 Msa0416110:CDS 45.0%
GCCCTTTACTGTATCTCCTT+GGG - chr3_2:62789862-62789881 Msa0416110:CDS 45.0%
TACTGTATCTCCTTGGGTAC+TGG - chr3_2:62789868-62789887 Msa0416110:CDS 45.0%
GTCCAAGACAATGTTAGCTG+GGG - chr3_2:62790039-62790058 Msa0416110:CDS 45.0%
!!! GTACGTAGCGTTGACACTTT+TGG - chr3_2:62790336-62790355 Msa0416110:intron 45.0%
!! TGAAGCACCGACATAAATGC+AGG + chr3_2:62790458-62790477 None:intergenic 45.0%
! ATGTCGGTGCTTCATTGGTT+TGG - chr3_2:62790464-62790483 Msa0416110:intron 45.0%
GTCACTGTTGCTAATCTCCA+TGG + chr3_2:62790846-62790865 None:intergenic 45.0%
CCTAAGCTTCTCATTGAGTC+AGG + chr3_2:62791344-62791363 None:intergenic 45.0%
CCTGACTCAATGAGAAGCTT+AGG - chr3_2:62791341-62791360 Msa0416110:intron 45.0%
! GAGTGATGGAGTAGAGATGA+TGG - chr3_2:62791616-62791635 Msa0416110:exon 45.0%
!!! ATATTATTTTAATAAAACAA+TGG - chr3_2:62788451-62788470 Msa0416110:CDS 5.0%
!!! AAAATTAATAAATTTGTTAA+TGG - chr3_2:62789197-62789216 Msa0416110:intron 5.0%
!! TGTATCTCCTTGGGTACTGG+AGG - chr3_2:62789871-62789890 Msa0416110:CDS 50.0%
TTTGTGTCCTCCAGTACCCA+AGG + chr3_2:62789881-62789900 None:intergenic 50.0%
TGGAGGACACAAACCATGCT+TGG - chr3_2:62789888-62789907 Msa0416110:CDS 50.0%
CTCCCCAGCTAACATTGTCT+TGG + chr3_2:62790044-62790063 None:intergenic 50.0%
CAGTGGAAACAGAAGCTGGT+GGG + chr3_2:62791016-62791035 None:intergenic 50.0%
TGTTTCCACTGCAGCAGCAA+TGG - chr3_2:62791025-62791044 Msa0416110:CDS 50.0%
GTTTCCACTGCAGCAGCAAT+GGG - chr3_2:62791026-62791045 Msa0416110:CDS 50.0%
GCTCCGAAGCTTTCCAAGCA+TGG + chr3_2:62789904-62789923 None:intergenic 55.0%
GCAGTGGAAACAGAAGCTGG+TGG + chr3_2:62791017-62791036 None:intergenic 55.0%
GCTGCAGTGGAAACAGAAGC+TGG + chr3_2:62791020-62791039 None:intergenic 55.0%
GGTGCCCATTGCTGCTGCAG+TGG + chr3_2:62791033-62791052 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 62788231 62791643 62788231 ID=Msa0416110;Name=Msa0416110
chr3_2 mRNA 62788231 62791643 62788231 ID=Msa0416110-mRNA-1;Parent=Msa0416110;Name=Msa0416110-mRNA-1;_AED=0.37;_eAED=0.37;_QI=20|0.33|0.25|1|1|1|4|0|513
chr3_2 exon 62788231 62789073 62788231 ID=Msa0416110-mRNA-1:exon:13627;Parent=Msa0416110-mRNA-1
chr3_2 exon 62789695 62790117 62789695 ID=Msa0416110-mRNA-1:exon:13626;Parent=Msa0416110-mRNA-1
chr3_2 exon 62790991 62791127 62790991 ID=Msa0416110-mRNA-1:exon:13625;Parent=Msa0416110-mRNA-1
chr3_2 exon 62791485 62791643 62791485 ID=Msa0416110-mRNA-1:exon:13624;Parent=Msa0416110-mRNA-1
chr3_2 five_prime_UTR 62791624 62791643 62791624 ID=Msa0416110-mRNA-1:five_prime_utr;Parent=Msa0416110-mRNA-1
chr3_2 CDS 62791485 62791623 62791485 ID=Msa0416110-mRNA-1:cds;Parent=Msa0416110-mRNA-1
chr3_2 CDS 62790991 62791127 62790991 ID=Msa0416110-mRNA-1:cds;Parent=Msa0416110-mRNA-1
chr3_2 CDS 62789695 62790117 62789695 ID=Msa0416110-mRNA-1:cds;Parent=Msa0416110-mRNA-1
chr3_2 CDS 62788231 62789073 62788231 ID=Msa0416110-mRNA-1:cds;Parent=Msa0416110-mRNA-1
Gene Sequence

>Msa0416110

ATGGAGCAAGAAAAAAAGCAAGGTACAAGAGAAGAAATTGAACAAGAGAAATGGGTTTCTGATGGTTCTGTGGATTGTAAAGGCAAAGTTCCTCTTCGTGCTAAAACTGGTGTATGGATAGCTTCTCTCTTTGTCCTTAATCTTAAAACTGCAGCAAAGAATGTAAATTATTGGGCAGGAACAACAACCTTGATGCCTCTAATAGGTGGATTTCTTGCTGATGCTTACATTGGTCGATTTCCTATGGTCCTATTTTCTTCCCTCGTCTACCTTATGGGATTAAGCTTATTGACAATGTCTCAATACATCCCAAGTTTAAAGCCATGCAACACAAAGACATGTCTTCAGCCAAGGAAAATTCATGAAGTTGTTTTCTTCCTTGCCCTTTACTGTATCTCCTTGGGTACTGGAGGACACAAACCATGCTTGGAAAGCTTCGGAGCTGATCAATTCGATGAAGATCACATCGAAGAAAGGAAGAAGAAAATGTCTTTCTTCAACTGGTGGAACTTTGCATTGTGTTTTGCATTGCTTCTTGGTGCAACAGTGATTGTTTATGTCCAAGACAATGTTAGCTGGGGAGCTGCAAGTCTTATTCTCACAATTCTTATGGCTTTATGTATCATAGCTTTTTATGTGGGGAAGCCTTTTTATAGGTATAGAAGGCCAGAAGGAAATACTTTAAAACCAATTTTACAGGCTGCTATAATAGAAGACACACATGTTGATCAAAAACACAATCCATGGAGATTAGCAACAGTGACAAAAGTAGAAGAAACAAAGCTTATTCTCAATATAATTCCCATATGGCTAACTTCACTAACAACAGGAATATGTGTAGCACAAGGGTCCACACTCTTTGTAAAACAAGCTGCTTCAATGAACTTGAAACTAAGTGACAGTTTCACAATCCCACCAGCTTCTGTTTCCACTGCAGCAGCAATGGGCACCTTAATATCTGTTCCAATATATGACAAGATTATTGTTCCAATGCTGAGAAAAATCACTGGTAATGAAAGAGGAATCAGCATACTTAGAAGAATTTCCATTGGCTTCACATTTTCAGTCATAGTTATGATTGTTGCAGCATTAGTAGAAGCTAAGAGACTTAGAATGAATGAGCAAGAAACAAGTCAAAATACTATGAGTGTGTTTTGGTTAGTGCCTCAATATTTGATTCTTGGCTTTGGTGATTCATTTTCTCTTGTTGGTTTACAAGAGTATTTCTATGACCAAGTTCCTGACTCAATGAGAAGCTTAGGAATGGCTTTATATCTTAGTGTGATTGGAGTTGGAAGTTTCCTAAGTAGTTTTTTAATCACTATTGTGGATCATGTGACAGAAAAGAATGGTAAAAGTTGGATTGGTAAGGATATAAATTCAAGTCGTTTGGATAGGTTTTATTGGATGTTGGCAATTATTAATGCTTTGAATTTGTGTGTGTATCTTTTCTTGGCAAAGAGGTATACTTATAAGAGTGTACAAAGGACAGGTAATGAAATTGATGGTTATAAGAGTGATGGAGTAGAGATGATGGCATGA
Protein sequence

>Msa0416110

MEQEKKQGTREEIEQEKWVSDGSVDCKGKVPLRAKTGVWIASLFVLNLKTAAKNVNYWAGTTTLMPLIGGFLADAYIGRFPMVLFSSLVYLMGLSLLTMSQYIPSLKPCNTKTCLQPRKIHEVVFFLALYCISLGTGGHKPCLESFGADQFDEDHIEERKKKMSFFNWWNFALCFALLLGATVIVYVQDNVSWGAASLILTILMALCIIAFYVGKPFYRYRRPEGNTLKPILQAAIIEDTHVDQKHNPWRLATVTKVEETKLILNIIPIWLTSLTTGICVAQGSTLFVKQAASMNLKLSDSFTIPPASVSTAAAMGTLISVPIYDKIIVPMLRKITGNERGISILRRISIGFTFSVIVMIVAALVEAKRLRMNEQETSQNTMSVFWLVPQYLILGFGDSFSLVGLQEYFYDQVPDSMRSLGMALYLSVIGVGSFLSSFLITIVDHVTEKNGKSWIGKDINSSRLDRFYWMLAIINALNLCVYLFLAKRYTYKSVQRTGNEIDGYKSDGVEMMA*