Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340600 | XP_003608592.1 | 69.255 | 322 | 37 | 6 | 1 | 267 | 14 | 328 | 1.01e-142 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340600 | sp|Q9T072|BH025_ARATH | 54.400 | 125 | 52 | 2 | 131 | 250 | 135 | 259 | 3.46e-33 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340600 | G7JGD6 | 69.255 | 322 | 37 | 6 | 1 | 267 | 14 | 328 | 4.83e-143 | 414 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1340600 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1250410 | Msa1340600 | 0.814197 | 1.741241e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340600 | MtrunA17_Chr4g0054561 | 69.255 | 322 | 37 | 6 | 1 | 267 | 14 | 328 | 9.30e-147 | 414 |
| Msa1340600 | MtrunA17_Chr4g0054551 | 68.634 | 322 | 39 | 6 | 1 | 267 | 14 | 328 | 5.11e-145 | 409 |
| Msa1340600 | MtrunA17_Chr5g0400671 | 38.571 | 280 | 94 | 10 | 58 | 263 | 47 | 322 | 7.53e-39 | 138 |
| Msa1340600 | MtrunA17_Chr4g0049331 | 38.356 | 219 | 74 | 5 | 107 | 267 | 95 | 310 | 4.63e-32 | 120 |
| Msa1340600 | MtrunA17_Chr2g0280161 | 43.312 | 157 | 72 | 4 | 120 | 266 | 156 | 305 | 1.96e-29 | 114 |
| Msa1340600 | MtrunA17_Chr8g0336681 | 44.755 | 143 | 61 | 5 | 141 | 266 | 149 | 290 | 1.55e-28 | 111 |
| Msa1340600 | MtrunA17_Chr7g0225901 | 48.624 | 109 | 53 | 2 | 145 | 250 | 85 | 193 | 1.01e-27 | 107 |
| Msa1340600 | MtrunA17_Chr5g0400661 | 43.976 | 166 | 68 | 7 | 107 | 250 | 105 | 267 | 3.57e-27 | 107 |
| Msa1340600 | MtrunA17_Chr6g0468491 | 49.541 | 109 | 52 | 2 | 145 | 250 | 134 | 242 | 3.95e-27 | 107 |
| Msa1340600 | MtrunA17_Chr4g0054571 | 52.174 | 115 | 41 | 4 | 148 | 250 | 150 | 262 | 4.83e-26 | 104 |
| Msa1340600 | MtrunA17_Chr2g0307131 | 49.074 | 108 | 52 | 1 | 146 | 250 | 177 | 284 | 3.69e-25 | 102 |
| Msa1340600 | MtrunA17_Chr2g0307141 | 49.074 | 108 | 52 | 1 | 146 | 250 | 181 | 288 | 4.01e-25 | 102 |
| Msa1340600 | MtrunA17_Chr2g0333621 | 47.899 | 119 | 56 | 2 | 131 | 244 | 121 | 238 | 4.42e-25 | 101 |
| Msa1340600 | MtrunA17_Chr5g0400641 | 50.515 | 97 | 45 | 1 | 151 | 244 | 1 | 97 | 1.72e-24 | 96.3 |
| Msa1340600 | MtrunA17_Chr5g0400621 | 50.495 | 101 | 47 | 1 | 147 | 244 | 156 | 256 | 1.50e-23 | 97.4 |
| Msa1340600 | MtrunA17_Chr4g0054581 | 41.667 | 144 | 62 | 4 | 77 | 217 | 143 | 267 | 1.77e-23 | 98.2 |
| Msa1340600 | MtrunA17_Chr2g0333641 | 46.087 | 115 | 61 | 1 | 131 | 244 | 120 | 234 | 7.64e-23 | 95.5 |
| Msa1340600 | MtrunA17_Chr6g0468461 | 56.944 | 72 | 31 | 0 | 144 | 215 | 169 | 240 | 1.14e-21 | 92.8 |
| Msa1340600 | MtrunA17_Chr4g0033391 | 49.515 | 103 | 46 | 3 | 145 | 244 | 144 | 243 | 2.45e-21 | 91.7 |
| Msa1340600 | MtrunA17_Chr4g0002801 | 43.443 | 122 | 59 | 4 | 141 | 252 | 145 | 266 | 3.53e-21 | 90.9 |
| Msa1340600 | MtrunA17_Chr4g0033291 | 41.045 | 134 | 71 | 3 | 116 | 244 | 121 | 251 | 4.57e-21 | 90.9 |
| Msa1340600 | MtrunA17_Chr4g0002781 | 42.500 | 120 | 62 | 3 | 140 | 252 | 166 | 285 | 6.11e-20 | 87.8 |
| Msa1340600 | MtrunA17_Chr4g0054621 | 49.398 | 83 | 42 | 0 | 133 | 215 | 157 | 239 | 1.45e-19 | 86.7 |
| Msa1340600 | MtrunA17_Chr4g0033281 | 47.778 | 90 | 45 | 1 | 116 | 203 | 119 | 208 | 3.48e-19 | 85.5 |
| Msa1340600 | MtrunA17_Chr7g0249811 | 48.684 | 76 | 39 | 0 | 139 | 214 | 156 | 231 | 5.17e-18 | 82.4 |
| Msa1340600 | MtrunA17_Chr2g0333611 | 37.500 | 104 | 59 | 2 | 141 | 242 | 38 | 137 | 1.29e-17 | 79.3 |
| Msa1340600 | MtrunA17_Chr1g0185621 | 53.125 | 64 | 28 | 1 | 148 | 211 | 475 | 536 | 5.83e-15 | 74.3 |
| Msa1340600 | MtrunA17_Chr7g0260841 | 47.945 | 73 | 35 | 1 | 131 | 203 | 341 | 410 | 4.92e-14 | 71.6 |
| Msa1340600 | MtrunA17_Chr2g0333541 | 38.129 | 139 | 72 | 4 | 141 | 266 | 87 | 224 | 4.27e-13 | 67.8 |
| Msa1340600 | MtrunA17_Chr7g0275821 | 51.786 | 56 | 27 | 0 | 148 | 203 | 252 | 307 | 6.10e-13 | 68.2 |
| Msa1340600 | MtrunA17_Chr8g0386921 | 41.791 | 67 | 39 | 0 | 145 | 211 | 403 | 469 | 4.65e-12 | 65.9 |
| Msa1340600 | MtrunA17_Chr8g0346161 | 42.529 | 87 | 42 | 3 | 129 | 209 | 270 | 354 | 5.14e-12 | 65.5 |
| Msa1340600 | MtrunA17_Chr8g0366751 | 45.070 | 71 | 36 | 1 | 131 | 201 | 448 | 515 | 7.17e-12 | 65.1 |
| Msa1340600 | MtrunA17_Chr8g0346151 | 36.441 | 118 | 58 | 5 | 129 | 232 | 258 | 372 | 1.94e-11 | 63.5 |
| Msa1340600 | MtrunA17_Chr5g0411341 | 45.070 | 71 | 36 | 1 | 131 | 201 | 479 | 546 | 2.25e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340600 | AT4G37850.2 | 54.400 | 125 | 52 | 2 | 131 | 250 | 135 | 259 | 3.52e-34 | 126 |
| Msa1340600 | AT4G37850.1 | 54.400 | 125 | 52 | 2 | 131 | 250 | 135 | 259 | 3.52e-34 | 126 |
| Msa1340600 | AT2G22760.2 | 54.464 | 112 | 45 | 3 | 141 | 246 | 112 | 223 | 3.65e-32 | 120 |
| Msa1340600 | AT2G22760.1 | 54.464 | 112 | 45 | 3 | 141 | 246 | 112 | 223 | 6.52e-32 | 119 |
| Msa1340600 | AT2G22770.1 | 54.128 | 109 | 45 | 2 | 118 | 221 | 99 | 207 | 7.42e-27 | 106 |
| Msa1340600 | AT2G22750.2 | 50.413 | 121 | 52 | 2 | 138 | 250 | 116 | 236 | 1.05e-24 | 100 |
| Msa1340600 | AT2G22750.1 | 50.413 | 121 | 52 | 2 | 138 | 250 | 116 | 236 | 1.06e-24 | 100 |
| Msa1340600 | AT2G22750.3 | 50.413 | 121 | 52 | 2 | 138 | 250 | 144 | 264 | 1.07e-24 | 101 |
| Msa1340600 | AT2G22750.4 | 49.194 | 124 | 55 | 2 | 135 | 250 | 141 | 264 | 1.15e-24 | 100 |
| Msa1340600 | AT2G22750.5 | 49.194 | 124 | 55 | 2 | 135 | 250 | 137 | 260 | 1.31e-24 | 100 |
| Msa1340600 | AT2G46510.1 | 48.780 | 82 | 39 | 1 | 122 | 203 | 372 | 450 | 8.53e-16 | 77.4 |
| Msa1340600 | AT1G01260.1 | 49.153 | 59 | 30 | 0 | 145 | 203 | 430 | 488 | 1.14e-12 | 68.2 |
| Msa1340600 | AT1G01260.2 | 49.153 | 59 | 30 | 0 | 145 | 203 | 430 | 488 | 1.14e-12 | 68.2 |
| Msa1340600 | AT1G01260.3 | 49.153 | 59 | 30 | 0 | 145 | 203 | 430 | 488 | 1.14e-12 | 68.2 |
| Msa1340600 | AT4G16430.1 | 41.772 | 79 | 42 | 1 | 129 | 203 | 297 | 375 | 3.86e-12 | 66.2 |
| Msa1340600 | AT1G63650.3 | 36.782 | 87 | 54 | 1 | 143 | 228 | 400 | 486 | 3.87e-12 | 66.2 |
| Msa1340600 | AT1G63650.1 | 36.782 | 87 | 54 | 1 | 143 | 228 | 400 | 486 | 3.87e-12 | 66.2 |
| Msa1340600 | AT1G63650.2 | 36.782 | 87 | 54 | 1 | 143 | 228 | 400 | 486 | 3.87e-12 | 66.2 |
| Msa1340600 | AT1G32640.1 | 41.346 | 104 | 53 | 4 | 131 | 229 | 438 | 538 | 4.61e-12 | 66.2 |
| Msa1340600 | AT4G09820.1 | 50.820 | 61 | 30 | 0 | 141 | 201 | 356 | 416 | 6.51e-12 | 65.9 |
| Msa1340600 | AT4G17880.1 | 43.662 | 71 | 37 | 1 | 131 | 201 | 402 | 469 | 5.62e-11 | 62.8 |
| Msa1340600 | AT2G16910.1 | 50.000 | 56 | 28 | 0 | 149 | 204 | 315 | 370 | 5.92e-11 | 62.8 |
| Msa1340600 | AT5G46760.1 | 43.662 | 71 | 37 | 1 | 131 | 201 | 401 | 468 | 6.78e-11 | 62.8 |
| Msa1340600 | AT4G29930.4 | 45.455 | 55 | 30 | 0 | 150 | 204 | 56 | 110 | 8.43e-11 | 60.1 |
| Msa1340600 | AT5G57150.3 | 45.763 | 59 | 32 | 0 | 146 | 204 | 53 | 111 | 9.65e-11 | 60.5 |
Find 47 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGAGAAAACTTGAATTT+TGG | 0.186505 | tig0004284:-11148 | Msa1340600:CDS |
| GATGGACAAGGCAACTATTT+TGG | 0.186609 | tig0004284:-10790 | Msa1340600:CDS |
| TGCATTCCAGTTTGATGATA+TGG | 0.223416 | tig0004284:-11431 | Msa1340600:CDS |
| TTTGAATTAACAGGGATTAA+TGG | 0.241351 | tig0004284:-11500 | None:intergenic |
| GCTCTTTCATCTCTTCTTCC+TGG | 0.251328 | tig0004284:-10992 | Msa1340600:CDS |
| TCTTCTTCCTGGACTCAAAA+AGG | 0.317343 | tig0004284:-10981 | Msa1340600:intron |
| TTCACCCTTGCATCCATGTT+GGG | 0.322043 | tig0004284:+11193 | Msa1340600:intergenic |
| AGAATTGTTCTGTGTGCTTT+CGG | 0.323320 | tig0004284:+11324 | Msa1340600:intergenic |
| AGAATATTGCTTGACAATAA+AGG | 0.327738 | tig0004284:-10041 | Msa1340600:CDS |
| ACATGATCTTGAGCCTGAAT+AGG | 0.366395 | tig0004284:+11061 | Msa1340600:intergenic |
| CATGATCTTGAGCCTGAATA+GGG | 0.371001 | tig0004284:+11062 | Msa1340600:intergenic |
| CTTCACCCTTGCATCCATGT+TGG | 0.390761 | tig0004284:+11192 | Msa1340600:intergenic |
| TTCAAAAGAAATAATGATCT+TGG | 0.392467 | tig0004284:+11216 | Msa1340600:intergenic |
| TCGCTTGTTGTTGATGTTGT+TGG | 0.394714 | tig0004284:+11354 | Msa1340600:intergenic |
| AAGAAGCCTAAAACCGAGAT+TGG | 0.405458 | tig0004284:-11172 | Msa1340600:CDS |
| AATAAATAGAAACCCTATTC+AGG | 0.429952 | tig0004284:-11074 | Msa1340600:CDS |
| AGTATGCCATATCATCAAAC+TGG | 0.434714 | tig0004284:+11425 | Msa1340600:intergenic |
| TTGACCAGGACTACTTTCAA+TGG | 0.436916 | tig0004284:+11297 | Msa1340600:intergenic |
| ATGAAAGAGCAATGAATCTC+TGG | 0.443321 | tig0004284:+11005 | Msa1340600:intergenic |
| TGACCAGGACTACTTTCAAT+GGG | 0.452873 | tig0004284:+11298 | Msa1340600:intergenic |
| TTCCCCATTGAAAGTAGTCC+TGG | 0.464737 | tig0004284:-11301 | Msa1340600:CDS |
| CCTAAAACCGAGATTGGGTA+TGG | 0.484824 | tig0004284:-11166 | Msa1340600:CDS |
| TGGAATGCATATGAATCCAT+TGG | 0.489021 | tig0004284:+11445 | Msa1340600:intergenic |
| GGAACGAGTGAAGACTTTAG+AGG | 0.491147 | tig0004284:-10736 | Msa1340600:CDS |
| AGGAATAAGTACTCTCTTGT+GGG | 0.507070 | tig0004284:+11383 | Msa1340600:intergenic |
| TCAGGCTCAAGATCATGTTA+TGG | 0.510343 | tig0004284:-11056 | Msa1340600:CDS |
| ACTTCCGAAAATTGAAGCAA+GGG | 0.522336 | tig0004284:-10610 | Msa1340600:intron |
| TCTCGTAAGGAGCATAAGTC+AGG | 0.525482 | tig0004284:-10017 | Msa1340600:CDS |
| CACTTCCGAAAATTGAAGCA+AGG | 0.531807 | tig0004284:-10611 | Msa1340600:CDS |
| TGTTCTGTGTGCTTTCGGAA+TGG | 0.533620 | tig0004284:+11329 | Msa1340600:intergenic |
| GTTGATGTTGTTGGTATGAG+AGG | 0.543066 | tig0004284:+11363 | Msa1340600:intergenic |
| GAGGAATAAGTACTCTCTTG+TGG | 0.546666 | tig0004284:+11382 | Msa1340600:intergenic |
| TTTGGAAGTGTGATATCTCA+AGG | 0.551675 | tig0004284:-11130 | Msa1340600:CDS |
| AGAAGCCTAAAACCGAGATT+GGG | 0.552154 | tig0004284:-11171 | Msa1340600:CDS |
| AAAACATATGAAGCAACTAC+AGG | 0.565504 | tig0004284:-10757 | Msa1340600:CDS |
| TTGAACCCAACATGGATGCA+AGG | 0.568189 | tig0004284:-11198 | Msa1340600:CDS |
| TGAACCCAACATGGATGCAA+GGG | 0.578656 | tig0004284:-11197 | Msa1340600:CDS |
| TAGTGATCATGAATATCCAA+TGG | 0.584018 | tig0004284:-11461 | Msa1340600:CDS |
| TGACAATAAAGGATCTCGTA+AGG | 0.599743 | tig0004284:-10030 | Msa1340600:CDS |
| GAATTAACAGGGATTAATGG+AGG | 0.608513 | tig0004284:-11497 | None:intergenic |
| TTATTATAAACGAGAGAACA+AGG | 0.617033 | tig0004284:-11104 | Msa1340600:CDS |
| GGAATAAGTACTCTCTTGTG+GGG | 0.633544 | tig0004284:+11384 | Msa1340600:intergenic |
| ACTTTGCATGCAGATGGACA+AGG | 0.646531 | tig0004284:-10802 | Msa1340600:intron |
| TATGGCAGAAAGAAGACGAA+GGG | 0.657033 | tig0004284:-11038 | Msa1340600:CDS |
| GCTGAAGCAACAGATTGACC+AGG | 0.668418 | tig0004284:+11283 | Msa1340600:intergenic |
| TTATGGCAGAAAGAAGACGA+AGG | 0.702887 | tig0004284:-11039 | Msa1340600:CDS |
| GACCAGGACTACTTTCAATG+GGG | 0.715740 | tig0004284:+11299 | Msa1340590:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTAAAATTTTTAAGT+TGG | + | tig0004284:11186-11205 | Msa1340600:intergenic | 10.0% |
| !!! | AAGTTTTAAAATTTTTAAGT+TGG | + | tig0004284:11186-11205 | Msa1340600:intergenic | 10.0% |
| !!! | ATTTTAATTAGGTTTTAAGT+TGG | + | tig0004284:11214-11233 | Msa1340600:intergenic | 15.0% |
| !!! | CAGATTTTATTTAATTTTCA+TGG | - | tig0004284:11390-11409 | Msa1340600:CDS | 15.0% |
| !!! | ATTTTAATTAGGTTTTAAGT+TGG | + | tig0004284:11214-11233 | Msa1340600:intergenic | 15.0% |
| !!! | CAGATTTTATTTAATTTTCA+TGG | - | tig0004284:11390-11409 | Msa1340600:CDS | 15.0% |
| !! | TTCAAAAGAAATAATGATCT+TGG | + | tig0004284:10271-10290 | Msa1340600:intergenic | 20.0% |
| !!! | GTTTATTTTAAGTTTCTAGT+TGG | - | tig0004284:11127-11146 | Msa1340600:CDS | 20.0% |
| !!! | CTCTTATGATCATTTTAATT+AGG | + | tig0004284:11225-11244 | Msa1340600:intergenic | 20.0% |
| !! | TCATGTTGATATATTCTATT+TGG | - | tig0004284:11296-11315 | Msa1340600:CDS | 20.0% |
| !! | TTCAAAAGAAATAATGATCT+TGG | + | tig0004284:10271-10290 | Msa1340600:intergenic | 20.0% |
| !!! | GTTTATTTTAAGTTTCTAGT+TGG | - | tig0004284:11127-11146 | Msa1340600:CDS | 20.0% |
| !!! | CTCTTATGATCATTTTAATT+AGG | + | tig0004284:11225-11244 | Msa1340600:intergenic | 20.0% |
| !! | TCATGTTGATATATTCTATT+TGG | - | tig0004284:11296-11315 | Msa1340600:CDS | 20.0% |
| !! | TATGGAGAAAACTTGAATTT+TGG | - | tig0004284:10336-10355 | Msa1340600:intron | 25.0% |
| ! | TTATTATAAACGAGAGAACA+AGG | - | tig0004284:10380-10399 | Msa1340600:intron | 25.0% |
| ! | AATAAATAGAAACCCTATTC+AGG | - | tig0004284:10410-10429 | Msa1340600:intron | 25.0% |
| ! | TGTTAGTATAGTTGCAATTT+AGG | - | tig0004284:10601-10620 | Msa1340600:intron | 25.0% |
| !! | GATATTATGGTTTTCAATTG+CGG | + | tig0004284:10634-10653 | Msa1340600:intergenic | 25.0% |
| !! | TCAAGATAGTTATTTCCAAA+TGG | + | tig0004284:11019-11038 | Msa1340600:intergenic | 25.0% |
| !! | TTTCAAAGTGAGTAATGTTT+TGG | - | tig0004284:11159-11178 | Msa1340600:CDS | 25.0% |
| !! | TAAGCCTCTATATTTTATCT+CGG | - | tig0004284:11355-11374 | Msa1340600:CDS | 25.0% |
| !! | TTTTCCGAGATAAAATATAG+AGG | + | tig0004284:11362-11381 | Msa1340600:intergenic | 25.0% |
| ! | AGAATATTGCTTGACAATAA+AGG | - | tig0004284:11443-11462 | Msa1340600:CDS | 25.0% |
| !! | TATGGAGAAAACTTGAATTT+TGG | - | tig0004284:10336-10355 | Msa1340600:intron | 25.0% |
| ! | TTATTATAAACGAGAGAACA+AGG | - | tig0004284:10380-10399 | Msa1340600:intron | 25.0% |
| ! | AATAAATAGAAACCCTATTC+AGG | - | tig0004284:10410-10429 | Msa1340600:intron | 25.0% |
| ! | TGTTAGTATAGTTGCAATTT+AGG | - | tig0004284:10601-10620 | Msa1340600:intron | 25.0% |
| !! | GATATTATGGTTTTCAATTG+CGG | + | tig0004284:10634-10653 | Msa1340600:intergenic | 25.0% |
| !! | TCAAGATAGTTATTTCCAAA+TGG | + | tig0004284:11019-11038 | Msa1340600:intergenic | 25.0% |
| !! | TTTCAAAGTGAGTAATGTTT+TGG | - | tig0004284:11159-11178 | Msa1340600:CDS | 25.0% |
| !! | TAAGCCTCTATATTTTATCT+CGG | - | tig0004284:11355-11374 | Msa1340600:CDS | 25.0% |
| !! | TTTTCCGAGATAAAATATAG+AGG | + | tig0004284:11362-11381 | Msa1340600:intergenic | 25.0% |
| ! | AGAATATTGCTTGACAATAA+AGG | - | tig0004284:11443-11462 | Msa1340600:CDS | 25.0% |
| TAGTGATCATGAATATCCAA+TGG | - | tig0004284:10023-10042 | Msa1340600:CDS | 30.0% | |
| ! | TATTTCTTTTGAACCCAACA+TGG | - | tig0004284:10278-10297 | Msa1340600:intron | 30.0% |
| CTACTTGATAGAGGATATTA+TGG | + | tig0004284:10647-10666 | Msa1340600:intergenic | 30.0% | |
| TGGTTAATACTACTTGATAG+AGG | + | tig0004284:10656-10675 | Msa1340600:intergenic | 30.0% | |
| AAAACATATGAAGCAACTAC+AGG | - | tig0004284:10727-10746 | Msa1340600:CDS | 30.0% | |
| !!! | AGCTGATTCGACTTTTTTAT+TGG | + | tig0004284:10783-10802 | Msa1340600:intergenic | 30.0% |
| ATCCATTGTGACAAATATTG+TGG | - | tig0004284:10923-10942 | Msa1340600:intron | 30.0% | |
| ! | TTCTAATTCGATGAGTATTG+CGG | + | tig0004284:10960-10979 | Msa1340600:intergenic | 30.0% |
| TGATATAACAATTGTTGCTC+AGG | - | tig0004284:11036-11055 | Msa1340600:CDS | 30.0% | |
| !! | TTACTCACTTTGAAACAAGT+TGG | + | tig0004284:11154-11173 | Msa1340600:intergenic | 30.0% |
| AACTAGGCTAGAACATAAAA+TGG | + | tig0004284:11249-11268 | Msa1340600:intergenic | 30.0% | |
| TACTCATCACAAGAAAAACT+AGG | + | tig0004284:11265-11284 | Msa1340600:intergenic | 30.0% | |
| TAGTGATCATGAATATCCAA+TGG | - | tig0004284:10023-10042 | Msa1340600:CDS | 30.0% | |
| ! | TATTTCTTTTGAACCCAACA+TGG | - | tig0004284:10278-10297 | Msa1340600:intron | 30.0% |
| CTACTTGATAGAGGATATTA+TGG | + | tig0004284:10647-10666 | Msa1340600:intergenic | 30.0% | |
| TGGTTAATACTACTTGATAG+AGG | + | tig0004284:10656-10675 | Msa1340600:intergenic | 30.0% | |
| AAAACATATGAAGCAACTAC+AGG | - | tig0004284:10727-10746 | Msa1340600:CDS | 30.0% | |
| !!! | AGCTGATTCGACTTTTTTAT+TGG | + | tig0004284:10783-10802 | Msa1340600:intergenic | 30.0% |
| ATCCATTGTGACAAATATTG+TGG | - | tig0004284:10923-10942 | Msa1340600:intron | 30.0% | |
| ! | TTCTAATTCGATGAGTATTG+CGG | + | tig0004284:10960-10979 | Msa1340600:intergenic | 30.0% |
| TGATATAACAATTGTTGCTC+AGG | - | tig0004284:11036-11055 | Msa1340600:CDS | 30.0% | |
| !! | TTACTCACTTTGAAACAAGT+TGG | + | tig0004284:11154-11173 | Msa1340600:intergenic | 30.0% |
| AACTAGGCTAGAACATAAAA+TGG | + | tig0004284:11249-11268 | Msa1340600:intergenic | 30.0% | |
| TACTCATCACAAGAAAAACT+AGG | + | tig0004284:11265-11284 | Msa1340600:intergenic | 30.0% | |
| TGGAATGCATATGAATCCAT+TGG | + | tig0004284:10042-10061 | Msa1340600:intergenic | 35.0% | |
| ! | TGCATTCCAGTTTGATGATA+TGG | - | tig0004284:10053-10072 | Msa1340600:intron | 35.0% |
| AGTATGCCATATCATCAAAC+TGG | + | tig0004284:10062-10081 | Msa1340600:intergenic | 35.0% | |
| AGGAATAAGTACTCTCTTGT+GGG | + | tig0004284:10104-10123 | Msa1340600:intergenic | 35.0% | |
| AGAATTGTTCTGTGTGCTTT+CGG | + | tig0004284:10163-10182 | Msa1340600:intergenic | 35.0% | |
| !!! | GACTTGAGTCTTAGTTTTGT+TGG | + | tig0004284:10231-10250 | Msa1340600:intergenic | 35.0% |
| ! | TTTGGAAGTGTGATATCTCA+AGG | - | tig0004284:10354-10373 | Msa1340600:intron | 35.0% |
| ATGAAAGAGCAATGAATCTC+TGG | + | tig0004284:10482-10501 | Msa1340600:intergenic | 35.0% | |
| !!! | ATTAGTACCTTTTTGAGTCC+AGG | + | tig0004284:10513-10532 | Msa1340600:intergenic | 35.0% |
| ! | CTTCAATTTTCGGAAGTGAT+TGG | + | tig0004284:10871-10890 | Msa1340600:intergenic | 35.0% |
| ACTTCCGAAAATTGAAGCAA+GGG | - | tig0004284:10874-10893 | Msa1340600:intron | 35.0% | |
| ! | GAAACCCTTGCTTCAATTTT+CGG | + | tig0004284:10881-10900 | Msa1340600:intergenic | 35.0% |
| AAAATTGAAGCAAGGGTTTC+TGG | - | tig0004284:10881-10900 | Msa1340600:intron | 35.0% | |
| GCTTGTCTTAATTGCATGTT+TGG | - | tig0004284:11092-11111 | Msa1340600:CDS | 35.0% | |
| TGACAATAAAGGATCTCGTA+AGG | - | tig0004284:11454-11473 | Msa1340600:CDS | 35.0% | |
| TGGAATGCATATGAATCCAT+TGG | + | tig0004284:10042-10061 | Msa1340600:intergenic | 35.0% | |
| ! | TGCATTCCAGTTTGATGATA+TGG | - | tig0004284:10053-10072 | Msa1340600:intron | 35.0% |
| AGTATGCCATATCATCAAAC+TGG | + | tig0004284:10062-10081 | Msa1340600:intergenic | 35.0% | |
| AGGAATAAGTACTCTCTTGT+GGG | + | tig0004284:10104-10123 | Msa1340600:intergenic | 35.0% | |
| AGAATTGTTCTGTGTGCTTT+CGG | + | tig0004284:10163-10182 | Msa1340600:intergenic | 35.0% | |
| !!! | GACTTGAGTCTTAGTTTTGT+TGG | + | tig0004284:10231-10250 | Msa1340600:intergenic | 35.0% |
| ! | TTTGGAAGTGTGATATCTCA+AGG | - | tig0004284:10354-10373 | Msa1340600:intron | 35.0% |
| ATGAAAGAGCAATGAATCTC+TGG | + | tig0004284:10482-10501 | Msa1340600:intergenic | 35.0% | |
| !!! | ATTAGTACCTTTTTGAGTCC+AGG | + | tig0004284:10513-10532 | Msa1340600:intergenic | 35.0% |
| ! | CTTCAATTTTCGGAAGTGAT+TGG | + | tig0004284:10871-10890 | Msa1340600:intergenic | 35.0% |
| ACTTCCGAAAATTGAAGCAA+GGG | - | tig0004284:10874-10893 | Msa1340600:intron | 35.0% | |
| ! | GAAACCCTTGCTTCAATTTT+CGG | + | tig0004284:10881-10900 | Msa1340600:intergenic | 35.0% |
| AAAATTGAAGCAAGGGTTTC+TGG | - | tig0004284:10881-10900 | Msa1340600:intron | 35.0% | |
| GCTTGTCTTAATTGCATGTT+TGG | - | tig0004284:11092-11111 | Msa1340600:CDS | 35.0% | |
| TGACAATAAAGGATCTCGTA+AGG | - | tig0004284:11454-11473 | Msa1340600:CDS | 35.0% | |
| GGAATAAGTACTCTCTTGTG+GGG | + | tig0004284:10103-10122 | Msa1340600:intergenic | 40.0% | |
| GAGGAATAAGTACTCTCTTG+TGG | + | tig0004284:10105-10124 | Msa1340600:intergenic | 40.0% | |
| GTTGATGTTGTTGGTATGAG+AGG | + | tig0004284:10124-10143 | Msa1340600:intergenic | 40.0% | |
| !! | TCGCTTGTTGTTGATGTTGT+TGG | + | tig0004284:10133-10152 | Msa1340600:intergenic | 40.0% |
| TGACCAGGACTACTTTCAAT+GGG | + | tig0004284:10189-10208 | Msa1340600:intergenic | 40.0% | |
| TTGACCAGGACTACTTTCAA+TGG | + | tig0004284:10190-10209 | Msa1340600:intergenic | 40.0% | |
| AAGAAGCCTAAAACCGAGAT+TGG | - | tig0004284:10312-10331 | Msa1340600:intron | 40.0% | |
| AGAAGCCTAAAACCGAGATT+GGG | - | tig0004284:10313-10332 | Msa1340600:intron | 40.0% | |
| ! | GTTTTCTCCATACCCAATCT+CGG | + | tig0004284:10328-10347 | Msa1340600:intergenic | 40.0% |
| CATGATCTTGAGCCTGAATA+GGG | + | tig0004284:10425-10444 | Msa1340600:intergenic | 40.0% | |
| ACATGATCTTGAGCCTGAAT+AGG | + | tig0004284:10426-10445 | Msa1340600:intergenic | 40.0% | |
| TCAGGCTCAAGATCATGTTA+TGG | - | tig0004284:10428-10447 | Msa1340600:intron | 40.0% | |
| TTATGGCAGAAAGAAGACGA+AGG | - | tig0004284:10445-10464 | Msa1340600:intron | 40.0% | |
| TATGGCAGAAAGAAGACGAA+GGG | - | tig0004284:10446-10465 | Msa1340600:intron | 40.0% | |
| TCTTCTTCCTGGACTCAAAA+AGG | - | tig0004284:10503-10522 | Msa1340600:intron | 40.0% | |
| TCTGCATGCAAAGTGAACAT+TGG | + | tig0004284:10676-10695 | Msa1340600:intergenic | 40.0% | |
| ATGTTCACTTTGCATGCAGA+TGG | - | tig0004284:10676-10695 | Msa1340600:CDS | 40.0% | |
| ! | GATGGACAAGGCAACTATTT+TGG | - | tig0004284:10694-10713 | Msa1340600:CDS | 40.0% |
| CACTTCCGAAAATTGAAGCA+AGG | - | tig0004284:10873-10892 | Msa1340600:intron | 40.0% | |
| GGCCACAATATTTGTCACAA+TGG | + | tig0004284:10928-10947 | Msa1340600:intergenic | 40.0% | |
| AGCAGTTCTACTTTGCCATT+TGG | - | tig0004284:11001-11020 | Msa1340600:CDS | 40.0% | |
| GGAATAAGTACTCTCTTGTG+GGG | + | tig0004284:10103-10122 | Msa1340600:intergenic | 40.0% | |
| GAGGAATAAGTACTCTCTTG+TGG | + | tig0004284:10105-10124 | Msa1340600:intergenic | 40.0% | |
| GTTGATGTTGTTGGTATGAG+AGG | + | tig0004284:10124-10143 | Msa1340600:intergenic | 40.0% | |
| !! | TCGCTTGTTGTTGATGTTGT+TGG | + | tig0004284:10133-10152 | Msa1340600:intergenic | 40.0% |
| TGACCAGGACTACTTTCAAT+GGG | + | tig0004284:10189-10208 | Msa1340600:intergenic | 40.0% | |
| TTGACCAGGACTACTTTCAA+TGG | + | tig0004284:10190-10209 | Msa1340600:intergenic | 40.0% | |
| AAGAAGCCTAAAACCGAGAT+TGG | - | tig0004284:10312-10331 | Msa1340600:intron | 40.0% | |
| AGAAGCCTAAAACCGAGATT+GGG | - | tig0004284:10313-10332 | Msa1340600:intron | 40.0% | |
| ! | GTTTTCTCCATACCCAATCT+CGG | + | tig0004284:10328-10347 | Msa1340600:intergenic | 40.0% |
| CATGATCTTGAGCCTGAATA+GGG | + | tig0004284:10425-10444 | Msa1340600:intergenic | 40.0% | |
| ACATGATCTTGAGCCTGAAT+AGG | + | tig0004284:10426-10445 | Msa1340600:intergenic | 40.0% | |
| TCAGGCTCAAGATCATGTTA+TGG | - | tig0004284:10428-10447 | Msa1340600:intron | 40.0% | |
| TTATGGCAGAAAGAAGACGA+AGG | - | tig0004284:10445-10464 | Msa1340600:intron | 40.0% | |
| TATGGCAGAAAGAAGACGAA+GGG | - | tig0004284:10446-10465 | Msa1340600:intron | 40.0% | |
| TCTTCTTCCTGGACTCAAAA+AGG | - | tig0004284:10503-10522 | Msa1340600:intron | 40.0% | |
| TCTGCATGCAAAGTGAACAT+TGG | + | tig0004284:10676-10695 | Msa1340600:intergenic | 40.0% | |
| ATGTTCACTTTGCATGCAGA+TGG | - | tig0004284:10676-10695 | Msa1340600:CDS | 40.0% | |
| ! | GATGGACAAGGCAACTATTT+TGG | - | tig0004284:10694-10713 | Msa1340600:CDS | 40.0% |
| CACTTCCGAAAATTGAAGCA+AGG | - | tig0004284:10873-10892 | Msa1340600:intron | 40.0% | |
| GGCCACAATATTTGTCACAA+TGG | + | tig0004284:10928-10947 | Msa1340600:intergenic | 40.0% | |
| AGCAGTTCTACTTTGCCATT+TGG | - | tig0004284:11001-11020 | Msa1340600:CDS | 40.0% | |
| TGTTCTGTGTGCTTTCGGAA+TGG | + | tig0004284:10158-10177 | Msa1340600:intergenic | 45.0% | |
| TTCCCCATTGAAAGTAGTCC+TGG | - | tig0004284:10183-10202 | Msa1340600:intron | 45.0% | |
| GACCAGGACTACTTTCAATG+GGG | + | tig0004284:10188-10207 | Msa1340600:intergenic | 45.0% | |
| TTGAACCCAACATGGATGCA+AGG | - | tig0004284:10286-10305 | Msa1340600:intron | 45.0% | |
| TGAACCCAACATGGATGCAA+GGG | - | tig0004284:10287-10306 | Msa1340600:intron | 45.0% | |
| TTCACCCTTGCATCCATGTT+GGG | + | tig0004284:10294-10313 | Msa1340600:intergenic | 45.0% | |
| ! | CCATACCCAATCTCGGTTTT+AGG | + | tig0004284:10321-10340 | Msa1340600:intergenic | 45.0% |
| CCTAAAACCGAGATTGGGTA+TGG | - | tig0004284:10318-10337 | Msa1340600:intron | 45.0% | |
| GCTCTTTCATCTCTTCTTCC+TGG | - | tig0004284:10492-10511 | Msa1340600:intron | 45.0% | |
| ACTTTGCATGCAGATGGACA+AGG | - | tig0004284:10682-10701 | Msa1340600:CDS | 45.0% | |
| GGAACGAGTGAAGACTTTAG+AGG | - | tig0004284:10748-10767 | Msa1340600:CDS | 45.0% | |
| ! | TAGAACTGCTCTGAACAGTG+AGG | + | tig0004284:10991-11010 | Msa1340600:intergenic | 45.0% |
| ! | TCTCGTAAGGAGCATAAGTC+AGG | - | tig0004284:11467-11486 | Msa1340600:CDS | 45.0% |
| ! | GGAGCATAAGTCAGGTTTTG+AGG | - | tig0004284:11475-11494 | Msa1340600:CDS | 45.0% |
| !!! | GTTTTGAGGCAGCTCATTTG+AGG | - | tig0004284:11489-11508 | Msa1340600:CDS | 45.0% |
| TGTTCTGTGTGCTTTCGGAA+TGG | + | tig0004284:10158-10177 | Msa1340600:intergenic | 45.0% | |
| TTCCCCATTGAAAGTAGTCC+TGG | - | tig0004284:10183-10202 | Msa1340600:intron | 45.0% | |
| GACCAGGACTACTTTCAATG+GGG | + | tig0004284:10188-10207 | Msa1340600:intergenic | 45.0% | |
| TTGAACCCAACATGGATGCA+AGG | - | tig0004284:10286-10305 | Msa1340600:intron | 45.0% | |
| TGAACCCAACATGGATGCAA+GGG | - | tig0004284:10287-10306 | Msa1340600:intron | 45.0% | |
| TTCACCCTTGCATCCATGTT+GGG | + | tig0004284:10294-10313 | Msa1340600:intergenic | 45.0% | |
| ! | CCATACCCAATCTCGGTTTT+AGG | + | tig0004284:10321-10340 | Msa1340600:intergenic | 45.0% |
| CCTAAAACCGAGATTGGGTA+TGG | - | tig0004284:10318-10337 | Msa1340600:intron | 45.0% | |
| GCTCTTTCATCTCTTCTTCC+TGG | - | tig0004284:10492-10511 | Msa1340600:intron | 45.0% | |
| ACTTTGCATGCAGATGGACA+AGG | - | tig0004284:10682-10701 | Msa1340600:CDS | 45.0% | |
| GGAACGAGTGAAGACTTTAG+AGG | - | tig0004284:10748-10767 | Msa1340600:CDS | 45.0% | |
| ! | TAGAACTGCTCTGAACAGTG+AGG | + | tig0004284:10991-11010 | Msa1340600:intergenic | 45.0% |
| ! | TCTCGTAAGGAGCATAAGTC+AGG | - | tig0004284:11467-11486 | Msa1340600:CDS | 45.0% |
| ! | GGAGCATAAGTCAGGTTTTG+AGG | - | tig0004284:11475-11494 | Msa1340600:CDS | 45.0% |
| GCTGAAGCAACAGATTGACC+AGG | + | tig0004284:10204-10223 | Msa1340600:intergenic | 50.0% | |
| CTTCACCCTTGCATCCATGT+TGG | + | tig0004284:10295-10314 | Msa1340600:intergenic | 50.0% | |
| ! | TGAGTATTGCGGTCGCAGTT+CGG | + | tig0004284:10949-10968 | Msa1340600:intergenic | 50.0% |
| GCTGAAGCAACAGATTGACC+AGG | + | tig0004284:10204-10223 | Msa1340600:intergenic | 50.0% | |
| CTTCACCCTTGCATCCATGT+TGG | + | tig0004284:10295-10314 | Msa1340600:intergenic | 50.0% | |
| ! | TGAGTATTGCGGTCGCAGTT+CGG | + | tig0004284:10949-10968 | Msa1340600:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0004284 | gene | 9997 | 11509 | 9997 | ID=Msa1340600;Name=Msa1340600 |
| tig0004284 | mRNA | 9997 | 11509 | 9997 | ID=Msa1340600-mRNA-1;Parent=Msa1340600;Name=Msa1340600-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.5|0|1|1|1|3|0|267 |
| tig0004284 | exon | 10982 | 11509 | 10982 | ID=Msa1340600-mRNA-1:exon:2772;Parent=Msa1340600-mRNA-1 |
| tig0004284 | exon | 10611 | 10811 | 10611 | ID=Msa1340600-mRNA-1:exon:2771;Parent=Msa1340600-mRNA-1 |
| tig0004284 | exon | 9997 | 10071 | 9997 | ID=Msa1340600-mRNA-1:exon:2770;Parent=Msa1340600-mRNA-1 |
| tig0004284 | CDS | 10982 | 11509 | 10982 | ID=Msa1340600-mRNA-1:cds;Parent=Msa1340600-mRNA-1 |
| tig0004284 | CDS | 10611 | 10811 | 10611 | ID=Msa1340600-mRNA-1:cds;Parent=Msa1340600-mRNA-1 |
| tig0004284 | CDS | 9997 | 10071 | 9997 | ID=Msa1340600-mRNA-1:cds;Parent=Msa1340600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
