Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342250 | XP_024638133.1 | 99.611 | 257 | 1 | 0 | 1 | 257 | 329 | 585 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342250 | sp|Q9ZVM9|Y1461_ARATH | 62.185 | 238 | 82 | 4 | 1 | 231 | 325 | 561 | 6.06e-98 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342250 | A0A072VN46 | 99.222 | 257 | 1 | 1 | 1 | 257 | 329 | 584 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1159160 | Msa1342250 | 0.802217 | 6.229796e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342250 | MtrunA17_Chr1g0191221 | 99.222 | 257 | 1 | 1 | 1 | 257 | 329 | 584 | 0.0 | 523 |
| Msa1342250 | MtrunA17_Chr7g0273601 | 79.377 | 257 | 52 | 1 | 1 | 257 | 314 | 569 | 1.58e-148 | 426 |
| Msa1342250 | MtrunA17_Chr2g0286421 | 65.066 | 229 | 79 | 1 | 1 | 229 | 309 | 536 | 7.17e-102 | 306 |
| Msa1342250 | MtrunA17_Chr4g0066691 | 62.393 | 234 | 86 | 2 | 1 | 234 | 311 | 542 | 5.08e-99 | 300 |
| Msa1342250 | MtrunA17_Chr3g0131861 | 56.800 | 250 | 93 | 7 | 1 | 243 | 304 | 545 | 5.51e-87 | 269 |
| Msa1342250 | MtrunA17_Chr8g0385971 | 54.618 | 249 | 104 | 6 | 1 | 247 | 297 | 538 | 1.66e-81 | 254 |
| Msa1342250 | MtrunA17_Chr2g0317501 | 50.739 | 203 | 83 | 4 | 1 | 193 | 341 | 536 | 9.41e-60 | 201 |
| Msa1342250 | MtrunA17_Chr2g0276911 | 44.118 | 238 | 115 | 6 | 1 | 231 | 95 | 321 | 1.06e-53 | 180 |
| Msa1342250 | MtrunA17_Chr4g0040141 | 46.961 | 181 | 89 | 3 | 1 | 179 | 336 | 511 | 2.50e-47 | 166 |
| Msa1342250 | MtrunA17_Chr4g0061141 | 41.841 | 239 | 108 | 8 | 1 | 232 | 312 | 526 | 3.76e-45 | 160 |
| Msa1342250 | MtrunA17_Chr5g0396361 | 54.545 | 143 | 64 | 1 | 1 | 143 | 347 | 488 | 2.02e-44 | 158 |
| Msa1342250 | MtrunA17_Chr2g0324461 | 39.815 | 216 | 109 | 5 | 1 | 216 | 348 | 542 | 6.47e-44 | 157 |
| Msa1342250 | MtrunA17_Chr6g0453711 | 38.367 | 245 | 122 | 6 | 1 | 236 | 317 | 541 | 1.81e-42 | 152 |
| Msa1342250 | MtrunA17_Chr7g0218071 | 40.254 | 236 | 109 | 8 | 1 | 224 | 327 | 542 | 9.54e-41 | 148 |
| Msa1342250 | MtrunA17_Chr3g0093391 | 43.966 | 116 | 64 | 1 | 2 | 116 | 245 | 360 | 5.96e-25 | 103 |
| Msa1342250 | MtrunA17_Chr3g0093571 | 43.103 | 116 | 65 | 1 | 2 | 116 | 247 | 362 | 3.41e-24 | 100 |
| Msa1342250 | MtrunA17_Chr1g0201571 | 42.667 | 150 | 75 | 4 | 1 | 143 | 333 | 478 | 1.31e-21 | 93.6 |
| Msa1342250 | MtrunA17_Chr1g0194881 | 36.207 | 116 | 73 | 1 | 2 | 116 | 40 | 155 | 3.60e-15 | 73.9 |
| Msa1342250 | MtrunA17_Chr8g0383451 | 46.729 | 107 | 48 | 2 | 1 | 107 | 205 | 302 | 1.33e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342250 | AT1G54610.1 | 62.185 | 238 | 82 | 4 | 1 | 231 | 325 | 561 | 6.16e-99 | 300 |
| Msa1342250 | AT1G54610.3 | 62.185 | 238 | 82 | 4 | 1 | 231 | 325 | 561 | 6.16e-99 | 300 |
| Msa1342250 | AT1G54610.2 | 62.185 | 238 | 82 | 4 | 1 | 231 | 325 | 561 | 6.16e-99 | 300 |
| Msa1342250 | AT3G05050.3 | 55.769 | 260 | 101 | 4 | 1 | 257 | 345 | 593 | 3.97e-83 | 260 |
| Msa1342250 | AT3G05050.2 | 55.769 | 260 | 101 | 4 | 1 | 257 | 345 | 593 | 3.97e-83 | 260 |
| Msa1342250 | AT3G05050.1 | 55.769 | 260 | 101 | 4 | 1 | 257 | 345 | 593 | 3.97e-83 | 260 |
| Msa1342250 | AT5G50860.1 | 62.295 | 183 | 65 | 3 | 1 | 180 | 321 | 502 | 1.74e-73 | 234 |
| Msa1342250 | AT5G50860.2 | 58.683 | 167 | 62 | 3 | 1 | 160 | 321 | 487 | 1.99e-60 | 198 |
| Msa1342250 | AT1G53050.2 | 46.798 | 203 | 92 | 4 | 1 | 193 | 341 | 537 | 1.80e-54 | 186 |
| Msa1342250 | AT1G53050.1 | 46.798 | 203 | 92 | 4 | 1 | 193 | 341 | 537 | 1.80e-54 | 186 |
| Msa1342250 | AT1G09600.1 | 52.663 | 169 | 73 | 2 | 1 | 169 | 370 | 531 | 7.20e-51 | 177 |
| Msa1342250 | AT1G57700.1 | 51.124 | 178 | 79 | 3 | 1 | 178 | 353 | 522 | 2.92e-45 | 161 |
| Msa1342250 | AT4G10010.1 | 50.000 | 154 | 75 | 2 | 1 | 152 | 183 | 336 | 4.95e-45 | 157 |
| Msa1342250 | AT4G10010.2 | 50.000 | 154 | 75 | 2 | 1 | 152 | 363 | 516 | 4.90e-44 | 157 |
| Msa1342250 | AT1G71530.1 | 51.351 | 148 | 72 | 0 | 1 | 148 | 354 | 501 | 1.12e-43 | 156 |
| Msa1342250 | AT5G39420.1 | 57.576 | 132 | 54 | 2 | 1 | 131 | 312 | 442 | 5.78e-43 | 154 |
| Msa1342250 | AT3G01085.3 | 37.200 | 250 | 120 | 4 | 1 | 246 | 322 | 538 | 8.81e-43 | 154 |
| Msa1342250 | AT3G01085.1 | 37.200 | 250 | 120 | 4 | 1 | 246 | 322 | 538 | 9.11e-43 | 154 |
| Msa1342250 | AT3G01085.2 | 37.200 | 250 | 120 | 4 | 1 | 246 | 322 | 538 | 9.11e-43 | 154 |
| Msa1342250 | AT1G74330.3 | 60.000 | 110 | 44 | 0 | 1 | 110 | 330 | 439 | 3.21e-42 | 152 |
| Msa1342250 | AT1G74330.2 | 60.000 | 110 | 44 | 0 | 1 | 110 | 330 | 439 | 4.15e-42 | 152 |
| Msa1342250 | AT1G74330.1 | 60.000 | 110 | 44 | 0 | 1 | 110 | 330 | 439 | 4.79e-42 | 152 |
| Msa1342250 | AT1G03740.2 | 47.619 | 168 | 83 | 3 | 1 | 166 | 420 | 584 | 2.21e-41 | 150 |
| Msa1342250 | AT1G03740.1 | 47.619 | 168 | 83 | 3 | 1 | 166 | 420 | 584 | 2.77e-41 | 150 |
| Msa1342250 | AT5G44290.7 | 48.052 | 154 | 79 | 1 | 1 | 154 | 344 | 496 | 2.77e-41 | 148 |
| Msa1342250 | AT5G44290.6 | 51.773 | 141 | 66 | 1 | 1 | 141 | 344 | 482 | 1.40e-40 | 147 |
| Msa1342250 | AT5G44290.2 | 51.773 | 141 | 66 | 1 | 1 | 141 | 344 | 482 | 1.67e-40 | 147 |
| Msa1342250 | AT5G44290.5 | 51.773 | 141 | 66 | 1 | 1 | 141 | 344 | 482 | 1.67e-40 | 147 |
| Msa1342250 | AT5G44290.4 | 51.773 | 141 | 66 | 1 | 1 | 141 | 344 | 482 | 1.67e-40 | 147 |
| Msa1342250 | AT5G44290.1 | 51.773 | 141 | 66 | 1 | 1 | 141 | 344 | 482 | 1.67e-40 | 147 |
| Msa1342250 | AT5G44290.3 | 51.773 | 141 | 66 | 1 | 1 | 141 | 344 | 482 | 1.67e-40 | 147 |
| Msa1342250 | AT1G71530.2 | 58.182 | 110 | 46 | 0 | 1 | 110 | 354 | 463 | 1.58e-39 | 142 |
| Msa1342250 | AT1G18670.2 | 50.000 | 126 | 61 | 1 | 1 | 124 | 339 | 464 | 4.26e-36 | 135 |
| Msa1342250 | AT1G18670.1 | 50.000 | 126 | 61 | 1 | 1 | 124 | 339 | 464 | 6.07e-36 | 135 |
| Msa1342250 | AT1G18670.3 | 50.000 | 126 | 61 | 1 | 1 | 124 | 339 | 464 | 6.57e-36 | 135 |
| Msa1342250 | AT4G22940.1 | 52.941 | 119 | 54 | 1 | 2 | 120 | 312 | 428 | 7.39e-35 | 130 |
| Msa1342250 | AT4G22940.2 | 52.941 | 119 | 54 | 1 | 2 | 120 | 312 | 428 | 1.55e-34 | 130 |
| Msa1342250 | AT1G33770.1 | 53.383 | 133 | 61 | 1 | 1 | 132 | 348 | 480 | 3.31e-34 | 130 |
| Msa1342250 | AT5G10270.1 | 44.828 | 116 | 63 | 1 | 2 | 116 | 248 | 363 | 1.13e-25 | 105 |
| Msa1342250 | AT5G64960.1 | 42.241 | 116 | 66 | 1 | 2 | 116 | 248 | 363 | 1.02e-23 | 100 |
| Msa1342250 | AT5G64960.2 | 42.241 | 116 | 66 | 1 | 2 | 116 | 195 | 310 | 1.08e-23 | 99.8 |
| Msa1342250 | AT1G71530.3 | 55.696 | 79 | 35 | 0 | 1 | 79 | 354 | 432 | 2.59e-23 | 98.2 |
Find 70 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACCATTTCAAGCTTATTC+AGG | 0.259254 | tig0005313:+3858 | Msa1342250:CDS |
| TCCTTTACCCTTATCCTTGT+GGG | 0.293092 | tig0005313:-3973 | Msa1342250:intergenic |
| AGTTCCTCATGATGTCTCTT+TGG | 0.296560 | tig0005313:+3809 | Msa1342250:CDS |
| TCCTTGTGGGTTCCTTTGTA+TGG | 0.302676 | tig0005313:-3960 | Msa1342250:intergenic |
| TAACATCCATTTCCTTGGTT+GGG | 0.308980 | tig0005313:-2688 | Msa1342250:intergenic |
| GAAGTGCATTAAACAGCATT+TGG | 0.328589 | tig0005313:-4078 | Msa1342250:intergenic |
| TGGAGCTCAGCATTGGCTTC+AGG | 0.329762 | tig0005313:-3333 | Msa1342250:intergenic |
| ACATCATGAGGAACTATATC+TGG | 0.342785 | tig0005313:-3801 | Msa1342250:intergenic |
| GAGGCACTCTTCCGTTCTAT+TGG | 0.346835 | tig0005313:-1342 | Msa1342250:intergenic |
| TGGACAACTTGGATTTCCTT+TGG | 0.347537 | tig0005313:+3758 | Msa1342250:CDS |
| TCCTCCATCAGCTCGAGCTT+TGG | 0.360647 | tig0005313:-3265 | Msa1342250:intergenic |
| AACATACATCGATATTGTAT+TGG | 0.378403 | tig0005313:-3353 | Msa1342250:intergenic |
| AACATCCATTTCCTTGGTTG+GGG | 0.389481 | tig0005313:-2687 | Msa1342250:intergenic |
| GGACAACTTGGATTTCCTTT+GGG | 0.408009 | tig0005313:+3759 | Msa1342250:CDS |
| TTGAAATGGTTCCTTTGAAA+AGG | 0.412128 | tig0005313:-3847 | Msa1342250:intergenic |
| CAAAGGAACCCACAAGGATA+AGG | 0.416939 | tig0005313:+3965 | Msa1342250:CDS |
| TTAACATCCATTTCCTTGGT+TGG | 0.427937 | tig0005313:-2689 | Msa1342250:intergenic |
| TCAGCATTGGCTTCAGGAGC+AGG | 0.436905 | tig0005313:-3327 | Msa1342250:intergenic |
| TTCCTTTACCCTTATCCTTG+TGG | 0.444687 | tig0005313:-3974 | Msa1342250:intergenic |
| TTGAGAGGAGATACCGAGTC+TGG | 0.453708 | tig0005313:+4218 | Msa1342250:three_prime_UTR |
| GTGAAGTTAATTCCTTATCA+AGG | 0.457677 | tig0005313:+4127 | Msa1342250:three_prime_UTR |
| GCAGCCAAAGCTCGAGCTGA+TGG | 0.463265 | tig0005313:+3261 | Msa1342250:CDS |
| GTTCACCTTCTGATGAGTAT+TGG | 0.469006 | tig0005313:+1190 | Msa1342250:CDS |
| GGATACTTCGGAAGACTAGA+AGG | 0.469756 | tig0005313:-2665 | Msa1342250:intergenic |
| CCAAGGAAATGGATGTTAAA+CGG | 0.473253 | tig0005313:+2693 | Msa1342250:CDS |
| CCGTTTAACATCCATTTCCT+TGG | 0.474063 | tig0005313:-2693 | Msa1342250:intergenic |
| CCACATGAAGATGGACAACT+TGG | 0.474626 | tig0005313:+3747 | Msa1342250:CDS |
| GGACCTGAATAAGCTTGAAA+TGG | 0.478907 | tig0005313:-3861 | Msa1342250:intergenic |
| CTCTATAATATCACCAGACT+CGG | 0.485669 | tig0005313:-4231 | Msa1342250:intergenic |
| AAAGGAACCCACAAGGATAA+GGG | 0.487614 | tig0005313:+3966 | Msa1342250:CDS |
| AGAAGCATCGGACTCGTGAC+CGG | 0.491038 | tig0005313:+3289 | Msa1342250:CDS |
| CATAAGATATACAAACTTTG+CGG | 0.493324 | tig0005313:+1168 | Msa1342250:CDS |
| GGTTTGAACAAGGTAGCATT+GGG | 0.494557 | tig0005313:-1228 | Msa1342250:intergenic |
| ATAAGGAATTAACTTCACTT+AGG | 0.499711 | tig0005313:-4122 | Msa1342250:intergenic |
| ATTGCTAGTAGTATTACCTA+TGG | 0.504409 | tig0005313:-3883 | Msa1342250:intergenic |
| CTAGAAGGATCACAAGCATA+AGG | 0.514282 | tig0005313:-2650 | Msa1342250:intergenic |
| TTTCCTCCGCCACATGAAGA+TGG | 0.519949 | tig0005313:+3738 | Msa1342250:CDS |
| AGGTTTGAACAAGGTAGCAT+TGG | 0.520623 | tig0005313:-1229 | Msa1342250:intergenic |
| AAACACTGCGAACGATGCAT+TGG | 0.522816 | tig0005313:+3926 | Msa1342250:CDS |
| GAAGCATCGGACTCGTGACC+GGG | 0.523864 | tig0005313:+3290 | Msa1342250:CDS |
| ATTGTATTGGAGCTCAGCAT+TGG | 0.529663 | tig0005313:-3340 | Msa1342250:intergenic |
| CAAGCTTATTCAGGTCCCAT+AGG | 0.531470 | tig0005313:+3867 | Msa1342250:CDS |
| ACCCACAAGGATAAGGGTAA+AGG | 0.540255 | tig0005313:+3972 | Msa1342250:CDS |
| GCAATAAATTTGAGTTGTTG+TGG | 0.550061 | tig0005313:+4336 | Msa1342250:three_prime_UTR |
| TCGACAAGGGGAAGAGCAGA+AGG | 0.557293 | tig0005313:-1300 | Msa1342250:intergenic |
| ATAGGTAATACTACTAGCAA+TGG | 0.574668 | tig0005313:+3885 | Msa1342250:CDS |
| CTCACTTCTTAGAGCATCTG+AGG | 0.579559 | tig0005313:-1361 | Msa1342250:intergenic |
| TTCTTCCAATACTCATCAGA+AGG | 0.585226 | tig0005313:-1195 | Msa1342250:intergenic |
| TGTCCATCTTCATGTGGCGG+AGG | 0.587532 | tig0005313:-3741 | Msa1342250:intergenic |
| GATTTCATATGTAGCAGAGA+AGG | 0.594525 | tig0005313:+3673 | Msa1342250:intron |
| CTGATGGAGGAAAGAAGCAT+CGG | 0.614033 | tig0005313:+3277 | Msa1342250:CDS |
| TTGCAATTGATCCAATAGAA+CGG | 0.616305 | tig0005313:+1331 | Msa1342250:CDS |
| CAACTGAAGACTTATAAATG+AGG | 0.617698 | tig0005313:-4360 | Msa1342250:intergenic |
| GCCAAAGCTCGAGCTGATGG+AGG | 0.630268 | tig0005313:+3264 | Msa1342250:CDS |
| GATTTATCAAAACCATACAA+AGG | 0.631856 | tig0005313:+3948 | Msa1342250:CDS |
| AGTTGTCCATCTTCATGTGG+CGG | 0.635518 | tig0005313:-3744 | Msa1342250:intergenic |
| TTGCTAGTAGTATTACCTAT+GGG | 0.636916 | tig0005313:-3882 | Msa1342250:intergenic |
| CTCAGATGCTCTAAGAAGTG+AGG | 0.642163 | tig0005313:+1362 | Msa1342250:CDS |
| TGCAAGAAGAGTATCGACAA+GGG | 0.646823 | tig0005313:-1313 | Msa1342250:intergenic |
| CCAAGTTGTCCATCTTCATG+TGG | 0.655077 | tig0005313:-3747 | Msa1342250:intergenic |
| ACATCCATTTCCTTGGTTGG+GGG | 0.656127 | tig0005313:-2686 | Msa1342250:intergenic |
| GGCGTGACGATGAAGCCAGA+AGG | 0.658529 | tig0005313:+2714 | Msa1342250:CDS |
| ACAAGGGGAAGAGCAGAAGG+TGG | 0.659440 | tig0005313:-1297 | Msa1342250:intergenic |
| ATATGATTTGAAGCTCCCAA+AGG | 0.666514 | tig0005313:-3774 | Msa1342250:intergenic |
| GCAAGAAGAGTATCGACAAG+GGG | 0.668376 | tig0005313:-1312 | Msa1342250:intergenic |
| ACCATACAAAGGAACCCACA+AGG | 0.671575 | tig0005313:+3959 | Msa1342250:CDS |
| GAATCCAAAGAGACATCATG+AGG | 0.678986 | tig0005313:-3813 | Msa1342250:intergenic |
| TGGCTCTCGAGGTTTGAACA+AGG | 0.680774 | tig0005313:-1238 | Msa1342250:intergenic |
| TTGCAAGAAGAGTATCGACA+AGG | 0.683923 | tig0005313:-1314 | Msa1342250:intergenic |
| CTAGCAATGGTTTCACAAAG+CGG | 0.687658 | tig0005313:+3898 | Msa1342250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTATTAACATTTATTT+TGG | - | tig0005313:2507-2526 | Msa1342250:intergenic | 10.0% |
| !!! | TTGTATATTTTCAATTATAA+AGG | - | tig0005313:3521-3540 | Msa1342250:intergenic | 10.0% |
| !! | AAAAAAAACTATGAAAAAAA+AGG | - | tig0005313:4160-4179 | Msa1342250:intergenic | 10.0% |
| !!! | TAAATGAATTTATTCTAGTT+CGG | + | tig0005313:1890-1909 | Msa1342250:intron | 15.0% |
| !!! | AAGTTTGATTTGATATAAAA+TGG | + | tig0005313:2162-2181 | Msa1342250:intron | 15.0% |
| !!! | ATTTTATTACAAAACAACAA+AGG | + | tig0005313:2212-2231 | Msa1342250:intron | 15.0% |
| !! | TGTTTCAACTTTATTATTAT+AGG | + | tig0005313:3116-3135 | Msa1342250:intron | 15.0% |
| !! | GTTTCAACTTTATTATTATA+GGG | + | tig0005313:3117-3136 | Msa1342250:intron | 15.0% |
| !!! | GTTATTTAATTATGCATTTT+TGG | - | tig0005313:3476-3495 | Msa1342250:intergenic | 15.0% |
| !!! | TATAAATCAATCTCATTTTT+TGG | + | tig0005313:4046-4065 | Msa1342250:three_prime_UTR | 15.0% |
| !! | AAAAAACTCTTATATCTAAA+TGG | - | tig0005313:4192-4211 | Msa1342250:intergenic | 15.0% |
| !!! | TTTTTCTGATGTTGAAAATT+AGG | + | tig0005313:1584-1603 | Msa1342250:intron | 20.0% |
| !!! | TCTTTTTGTACAAAATACAA+GGG | - | tig0005313:1970-1989 | Msa1342250:intergenic | 20.0% |
| !!! | TTTGATTTGATATAAAATGG+TGG | + | tig0005313:2165-2184 | Msa1342250:intron | 20.0% |
| !!! | TTGATTTGATATAAAATGGT+GGG | + | tig0005313:2166-2185 | Msa1342250:intron | 20.0% |
| !!! | AATTTGTTGTCTTTTTTCTT+TGG | + | tig0005313:2404-2423 | Msa1342250:intron | 20.0% |
| !!! | TTGGAATAATAAGTTGATAA+AGG | + | tig0005313:2423-2442 | Msa1342250:intron | 20.0% |
| !! | AATTATTAGGATAAAGTATG+TGG | + | tig0005313:2476-2495 | Msa1342250:intron | 20.0% |
| !! | ATAAAAAAGGATTAAGAGTA+AGG | + | tig0005313:2821-2840 | Msa1342250:intron | 20.0% |
| !! | TTTAATATTATGTAGTGATC+AGG | + | tig0005313:2891-2910 | Msa1342250:intron | 20.0% |
| !! | TTTATTATTATAGGGATAGT+TGG | + | tig0005313:3125-3144 | Msa1342250:intron | 20.0% |
| ! | CATAAGATATACAAACTTTG+CGG | + | tig0005313:1168-1187 | Msa1342250:CDS | 25.0% |
| ! | ATAAAATAGTACCATCAACA+AGG | - | tig0005313:1457-1476 | Msa1342250:intergenic | 25.0% |
| !!! | GTTCAAGATTCAGTTTTTTA+AGG | - | tig0005313:1929-1948 | Msa1342250:intergenic | 25.0% |
| ! | TAAAAAACTGAATCTTGAAC+TGG | + | tig0005313:1929-1948 | Msa1342250:intron | 25.0% |
| !! | CTTTTTGTACAAAATACAAG+GGG | - | tig0005313:1969-1988 | Msa1342250:intergenic | 25.0% |
| !! | GTCTTTTTGTACAAAATACA+AGG | - | tig0005313:1971-1990 | Msa1342250:intergenic | 25.0% |
| ! | GATGTTGCATATAAATAAGA+AGG | - | tig0005313:2313-2332 | Msa1342250:intergenic | 25.0% |
| ! | ATGACGTGTTTCAAATTATT+AGG | + | tig0005313:2463-2482 | Msa1342250:intron | 25.0% |
| ! | AGTAAGGCAAAGTAAATATA+TGG | - | tig0005313:2597-2616 | Msa1342250:intergenic | 25.0% |
| ! | TAAAGAACTGCAAAAAAGAT+AGG | - | tig0005313:2622-2641 | Msa1342250:intergenic | 25.0% |
| ! | TATGAACATCAACGATAAAA+TGG | + | tig0005313:2858-2877 | Msa1342250:intron | 25.0% |
| ! | AGTTACTCAATAAATATACC+AGG | - | tig0005313:2929-2948 | Msa1342250:intergenic | 25.0% |
| !! | AGAACTTTTTGGACAAAAAT+TGG | + | tig0005313:2981-3000 | Msa1342250:intron | 25.0% |
| ! | TGAAACAGACTCTAATTATT+TGG | - | tig0005313:3103-3122 | Msa1342250:intergenic | 25.0% |
| ! | AGTTGGTTAAATATAATAGG+GGG | - | tig0005313:3203-3222 | Msa1342250:intergenic | 25.0% |
| !! | GAGTTGGTTAAATATAATAG+GGG | - | tig0005313:3204-3223 | Msa1342250:intergenic | 25.0% |
| !! | GGAGTTGGTTAAATATAATA+GGG | - | tig0005313:3205-3224 | Msa1342250:intergenic | 25.0% |
| ! | AACATACATCGATATTGTAT+TGG | - | tig0005313:3356-3375 | Msa1342250:intergenic | 25.0% |
| ! | ATACATATAGTTTGATGCAT+TGG | + | tig0005313:3404-3423 | Msa1342250:intron | 25.0% |
| ! | TTTATTAGATCTCACAATAC+TGG | + | tig0005313:3427-3446 | Msa1342250:intron | 25.0% |
| ! | TGAAAATGAACTATATCACA+GGG | - | tig0005313:3577-3596 | Msa1342250:intergenic | 25.0% |
| ! | ATGAAAATGAACTATATCAC+AGG | - | tig0005313:3578-3597 | Msa1342250:intergenic | 25.0% |
| !! | AATGTCATATACCTTTTCAA+AGG | + | tig0005313:3836-3855 | Msa1342250:CDS | 25.0% |
| ! | GATTTATCAAAACCATACAA+AGG | + | tig0005313:3948-3967 | Msa1342250:CDS | 25.0% |
| ! | ATAAGGAATTAACTTCACTT+AGG | - | tig0005313:4125-4144 | Msa1342250:intergenic | 25.0% |
| !!! | GAGTTTTTTCTTTTTTTGAG+AGG | + | tig0005313:4203-4222 | Msa1342250:three_prime_UTR | 25.0% |
| ! | TCTCTTATGCATCTTTTGTA+TGG | - | tig0005313:1261-1280 | Msa1342250:intergenic | 30.0% |
| TTGCAATTGATCCAATAGAA+CGG | + | tig0005313:1331-1350 | Msa1342250:CDS | 30.0% | |
| TTGTCATTAAAATGCAAGCA+TGG | + | tig0005313:1411-1430 | Msa1342250:intron | 30.0% | |
| ! | GGTACTATTTTATGCCAATT+AGG | + | tig0005313:1464-1483 | Msa1342250:intron | 30.0% |
| AACATCAGAAAAATATGCAG+CGG | - | tig0005313:1577-1596 | Msa1342250:intergenic | 30.0% | |
| ! | TTCAGTTTGGTTTACAGTTT+GGG | - | tig0005313:1631-1650 | Msa1342250:intergenic | 30.0% |
| ! | AAGTGATGGAAAATCATCAT+AGG | + | tig0005313:1728-1747 | Msa1342250:intron | 30.0% |
| ACTGAACTGAATAACAAGTT+TGG | + | tig0005313:1827-1846 | Msa1342250:intron | 30.0% | |
| ! | ATAACAAGTTTGGTTCAGTT+TGG | + | tig0005313:1837-1856 | Msa1342250:intron | 30.0% |
| ! | ATTTAAAAAGCACACTGAAC+TGG | - | tig0005313:1875-1894 | Msa1342250:intergenic | 30.0% |
| !!! | TACAAGGGGATTTTTTCAAT+AGG | - | tig0005313:1955-1974 | Msa1342250:intergenic | 30.0% |
| !!! | ATTTTATGAAGTGCTGCTAT+AGG | + | tig0005313:1999-2018 | Msa1342250:intron | 30.0% |
| TTAAGAGATAGATACATCCT+CGG | - | tig0005313:2093-2112 | Msa1342250:intergenic | 30.0% | |
| TTAGAATATGTATCCCTTCT+TGG | + | tig0005313:2127-2146 | Msa1342250:intron | 30.0% | |
| !! | TTTTGATTCCATTCCAAGAA+GGG | - | tig0005313:2143-2162 | Msa1342250:intergenic | 30.0% |
| !! | TTTTTGATTCCATTCCAAGA+AGG | - | tig0005313:2144-2163 | Msa1342250:intergenic | 30.0% |
| TATGCAGCAATGTAATCAAT+GGG | - | tig0005313:2244-2263 | Msa1342250:intergenic | 30.0% | |
| !!! | GTTTTTTTCGAGTTAACTAG+TGG | - | tig0005313:2352-2371 | Msa1342250:intergenic | 30.0% |
| GCAAAAAAGATAGGATAGTA+AGG | - | tig0005313:2613-2632 | Msa1342250:intergenic | 30.0% | |
| AACATCAACGATAAAATGGA+AGG | + | tig0005313:2862-2881 | Msa1342250:intron | 30.0% | |
| ATCAGGCTATATTTATAACC+TGG | + | tig0005313:2908-2927 | Msa1342250:intron | 30.0% | |
| ! | ATGCTTCTTTCAGAACTTTT+TGG | + | tig0005313:2970-2989 | Msa1342250:intron | 30.0% |
| ! | CGGAGTTGGTTAAATATAAT+AGG | - | tig0005313:3206-3225 | Msa1342250:intergenic | 30.0% |
| TCTGCTACATATGAAATCAT+AGG | - | tig0005313:3671-3690 | Msa1342250:intergenic | 30.0% | |
| ! | TTGAAATGGTTCCTTTGAAA+AGG | - | tig0005313:3850-3869 | Msa1342250:intergenic | 30.0% |
| TTGCTAGTAGTATTACCTAT+GGG | - | tig0005313:3885-3904 | Msa1342250:intergenic | 30.0% | |
| ATTGCTAGTAGTATTACCTA+TGG | - | tig0005313:3886-3905 | Msa1342250:intergenic | 30.0% | |
| ATAGGTAATACTACTAGCAA+TGG | + | tig0005313:3885-3904 | Msa1342250:CDS | 30.0% | |
| !!! | TCAATCTCATTTTTTGGTGT+TGG | + | tig0005313:4052-4071 | Msa1342250:three_prime_UTR | 30.0% |
| GTGAAGTTAATTCCTTATCA+AGG | + | tig0005313:4127-4146 | Msa1342250:three_prime_UTR | 30.0% | |
| ! | AAAGGTTTTACACCTTGATA+AGG | - | tig0005313:4142-4161 | Msa1342250:intergenic | 30.0% |
| !! | GCAATAAATTTGAGTTGTTG+TGG | + | tig0005313:4336-4355 | Msa1342250:three_prime_UTR | 30.0% |
| CAACTGAAGACTTATAAATG+AGG | - | tig0005313:4363-4382 | Msa1342250:intergenic | 30.0% | |
| TTCTTCCAATACTCATCAGA+AGG | - | tig0005313:1198-1217 | Msa1342250:intergenic | 35.0% | |
| !! | ATTTTGTACTGCCTTGTTGA+TGG | + | tig0005313:1443-1462 | Msa1342250:intron | 35.0% |
| ACAGATTGAAACAGCCTAAT+TGG | - | tig0005313:1481-1500 | Msa1342250:intergenic | 35.0% | |
| ! | GTTCAGTTTGGTTTACAGTT+TGG | - | tig0005313:1632-1651 | Msa1342250:intergenic | 35.0% |
| !! | CTTTTCAGATTGGTTCAGTT+TGG | - | tig0005313:1644-1663 | Msa1342250:intergenic | 35.0% |
| CAAACTGAACCAATCTGAAA+AGG | + | tig0005313:1642-1661 | Msa1342250:intron | 35.0% | |
| !! | AGTTCAGAAGCTTTAAGTGA+TGG | + | tig0005313:1714-1733 | Msa1342250:intron | 35.0% |
| GCAAAACCAAACTGAACTTT+GGG | - | tig0005313:1767-1786 | Msa1342250:intergenic | 35.0% | |
| TGCAAAACCAAACTGAACTT+TGG | - | tig0005313:1768-1787 | Msa1342250:intergenic | 35.0% | |
| TAAGAGATAGATACATCCTC+GGG | - | tig0005313:2092-2111 | Msa1342250:intergenic | 35.0% | |
| ATATGTATCCCTTCTTGGAA+TGG | + | tig0005313:2132-2151 | Msa1342250:intron | 35.0% | |
| !! | TGATATAAAATGGTGGGTTC+TGG | + | tig0005313:2172-2191 | Msa1342250:intron | 35.0% |
| ATGCAGCAATGTAATCAATG+GGG | - | tig0005313:2243-2262 | Msa1342250:intergenic | 35.0% | |
| CTATGCAGCAATGTAATCAA+TGG | - | tig0005313:2245-2264 | Msa1342250:intergenic | 35.0% | |
| TACATTGCTGCATAGCTTAA+AGG | + | tig0005313:2250-2269 | Msa1342250:intron | 35.0% | |
| TAAGAAGGATTGAGAGAGTT+GGG | - | tig0005313:2298-2317 | Msa1342250:intergenic | 35.0% | |
| ATAAGAAGGATTGAGAGAGT+TGG | - | tig0005313:2299-2318 | Msa1342250:intergenic | 35.0% | |
| CTACTTAACTCTAGTTACCT+TGG | + | tig0005313:2375-2394 | Msa1342250:intron | 35.0% | |
| TTAACTCTAGTTACCTTGGA+AGG | + | tig0005313:2379-2398 | Msa1342250:intron | 35.0% | |
| ! | GTTGATAAAGGTCCTAAATC+TGG | + | tig0005313:2435-2454 | Msa1342250:intron | 35.0% |
| ACGTCATTGAATCCAGATTT+AGG | - | tig0005313:2450-2469 | Msa1342250:intergenic | 35.0% | |
| TAACATCCATTTCCTTGGTT+GGG | - | tig0005313:2691-2710 | Msa1342250:intergenic | 35.0% | |
| TTAACATCCATTTCCTTGGT+TGG | - | tig0005313:2692-2711 | Msa1342250:intergenic | 35.0% | |
| CCAAGGAAATGGATGTTAAA+CGG | + | tig0005313:2693-2712 | Msa1342250:CDS | 35.0% | |
| ! | ATTAAGAGTAAGGAAGTGTG+CGG | + | tig0005313:2831-2850 | Msa1342250:intron | 35.0% |
| GGTCAGCAAAGAAAATATGT+AGG | - | tig0005313:3023-3042 | Msa1342250:intergenic | 35.0% | |
| TAAACGTGATACTGTCACAA+GGG | - | tig0005313:3044-3063 | Msa1342250:intergenic | 35.0% | |
| TTAAACGTGATACTGTCACA+AGG | - | tig0005313:3045-3064 | Msa1342250:intergenic | 35.0% | |
| TTGCATGTGCAAGTTTAAGT+TGG | + | tig0005313:3177-3196 | Msa1342250:intron | 35.0% | |
| CATTCATATCCACAGAAACT+CGG | - | tig0005313:3226-3245 | Msa1342250:intergenic | 35.0% | |
| GATTTCATATGTAGCAGAGA+AGG | + | tig0005313:3673-3692 | Msa1342250:intron | 35.0% | |
| ! | ATATGATTTGAAGCTCCCAA+AGG | - | tig0005313:3777-3796 | Msa1342250:intergenic | 35.0% |
| ACATCATGAGGAACTATATC+TGG | - | tig0005313:3804-3823 | Msa1342250:intergenic | 35.0% | |
| GAACCATTTCAAGCTTATTC+AGG | + | tig0005313:3858-3877 | Msa1342250:CDS | 35.0% | |
| GAAGTGCATTAAACAGCATT+TGG | - | tig0005313:4081-4100 | Msa1342250:intergenic | 35.0% | |
| CTCTATAATATCACCAGACT+CGG | - | tig0005313:4234-4253 | Msa1342250:intergenic | 35.0% | |
| GTTCACCTTCTGATGAGTAT+TGG | + | tig0005313:1190-1209 | Msa1342250:CDS | 40.0% | |
| GGTTTGAACAAGGTAGCATT+GGG | - | tig0005313:1231-1250 | Msa1342250:intergenic | 40.0% | |
| AGGTTTGAACAAGGTAGCAT+TGG | - | tig0005313:1232-1251 | Msa1342250:intergenic | 40.0% | |
| !! | TGCAAGAAGAGTATCGACAA+GGG | - | tig0005313:1316-1335 | Msa1342250:intergenic | 40.0% |
| !! | TTGCAAGAAGAGTATCGACA+AGG | - | tig0005313:1317-1336 | Msa1342250:intergenic | 40.0% |
| GTTTGATCCTGAGCTATTCT+CGG | + | tig0005313:1499-1518 | Msa1342250:intron | 40.0% | |
| ! | GGTTTTTCTGAACTGTGAAC+AGG | - | tig0005313:1610-1629 | Msa1342250:intergenic | 40.0% |
| GAACCAATCTGAAAAGGATC+TGG | + | tig0005313:1648-1667 | Msa1342250:intron | 40.0% | |
| ! | AGTCCAGATCCTTTTCAGAT+TGG | - | tig0005313:1654-1673 | Msa1342250:intergenic | 40.0% |
| ! | GAACTTTGGGTTCTTCATCA+TGG | - | tig0005313:1754-1773 | Msa1342250:intergenic | 40.0% |
| GAAGAACCCAAAGTTCAGTT+TGG | + | tig0005313:1758-1777 | Msa1342250:intron | 40.0% | |
| GTTATTCAGTTCAGTGCACT+AGG | - | tig0005313:1822-1841 | Msa1342250:intergenic | 40.0% | |
| ! | AACGTTTTTCCTCAGAGTCT+CGG | - | tig0005313:2054-2073 | Msa1342250:intergenic | 40.0% |
| !! | AAATGGTGGGTTCTGGTTTA+TGG | + | tig0005313:2179-2198 | Msa1342250:intron | 40.0% |
| AAGAAGGATTGAGAGAGTTG+GGG | - | tig0005313:2297-2316 | Msa1342250:intergenic | 40.0% | |
| GACAACAAATTGACCTTCCA+AGG | - | tig0005313:2395-2414 | Msa1342250:intergenic | 40.0% | |
| CTAGAAGGATCACAAGCATA+AGG | - | tig0005313:2653-2672 | Msa1342250:intergenic | 40.0% | |
| AACATCCATTTCCTTGGTTG+GGG | - | tig0005313:2690-2709 | Msa1342250:intergenic | 40.0% | |
| CCGTTTAACATCCATTTCCT+TGG | - | tig0005313:2696-2715 | Msa1342250:intergenic | 40.0% | |
| ATTGTATTGGAGCTCAGCAT+TGG | - | tig0005313:3343-3362 | Msa1342250:intergenic | 40.0% | |
| TGGACAACTTGGATTTCCTT+TGG | + | tig0005313:3758-3777 | Msa1342250:CDS | 40.0% | |
| GGACAACTTGGATTTCCTTT+GGG | + | tig0005313:3759-3778 | Msa1342250:CDS | 40.0% | |
| AGTTCCTCATGATGTCTCTT+TGG | + | tig0005313:3809-3828 | Msa1342250:CDS | 40.0% | |
| GAATCCAAAGAGACATCATG+AGG | - | tig0005313:3816-3835 | Msa1342250:intergenic | 40.0% | |
| GGACCTGAATAAGCTTGAAA+TGG | - | tig0005313:3864-3883 | Msa1342250:intergenic | 40.0% | |
| CTAGCAATGGTTTCACAAAG+CGG | + | tig0005313:3898-3917 | Msa1342250:CDS | 40.0% | |
| AAAGGAACCCACAAGGATAA+GGG | + | tig0005313:3966-3985 | Msa1342250:CDS | 40.0% | |
| TCCTTTACCCTTATCCTTGT+GGG | - | tig0005313:3976-3995 | Msa1342250:intergenic | 40.0% | |
| TTCCTTTACCCTTATCCTTG+TGG | - | tig0005313:3977-3996 | Msa1342250:intergenic | 40.0% | |
| ! | CATCTTTTGTATGGCTCTCG+AGG | - | tig0005313:1252-1271 | Msa1342250:intergenic | 45.0% |
| !! | GCAAGAAGAGTATCGACAAG+GGG | - | tig0005313:1315-1334 | Msa1342250:intergenic | 45.0% |
| ! | CTCACTTCTTAGAGCATCTG+AGG | - | tig0005313:1364-1383 | Msa1342250:intergenic | 45.0% |
| !! | CTCAGATGCTCTAAGAAGTG+AGG | + | tig0005313:1362-1381 | Msa1342250:CDS | 45.0% |
| ATATGCACCGAGAATAGCTC+AGG | - | tig0005313:1509-1528 | Msa1342250:intergenic | 45.0% | |
| GAGTCTTGACTACGTGTTCT+AGG | - | tig0005313:1538-1557 | Msa1342250:intergenic | 45.0% | |
| !! | GAAGTGCTGCTATAGGAGAA+TGG | + | tig0005313:2006-2025 | Msa1342250:intron | 45.0% |
| TGCTGCTATAGGAGAATGGT+CGG | + | tig0005313:2010-2029 | Msa1342250:intron | 45.0% | |
| ! | GAGACTCTGAGGAAAAACGT+TGG | + | tig0005313:2053-2072 | Msa1342250:intron | 45.0% |
| GGCTTCTGCATAATGCCAAA+AGG | + | tig0005313:2271-2290 | Msa1342250:intron | 45.0% | |
| GGATACTTCGGAAGACTAGA+AGG | - | tig0005313:2668-2687 | Msa1342250:intergenic | 45.0% | |
| ACATCCATTTCCTTGGTTGG+GGG | - | tig0005313:2689-2708 | Msa1342250:intergenic | 45.0% | |
| CTGCTCTTAGGCTTTGCTTT+CGG | + | tig0005313:2740-2759 | Msa1342250:intron | 45.0% | |
| TAACCAACTCCGAGTTTCTG+TGG | + | tig0005313:3214-3233 | Msa1342250:intron | 45.0% | |
| TATCCACAGAAACTCGGAGT+TGG | - | tig0005313:3220-3239 | Msa1342250:intergenic | 45.0% | |
| ! | CTGATGGAGGAAAGAAGCAT+CGG | + | tig0005313:3277-3296 | Msa1342250:CDS | 45.0% |
| AGTTGTCCATCTTCATGTGG+CGG | - | tig0005313:3747-3766 | Msa1342250:intergenic | 45.0% | |
| CCAAGTTGTCCATCTTCATG+TGG | - | tig0005313:3750-3769 | Msa1342250:intergenic | 45.0% | |
| CCACATGAAGATGGACAACT+TGG | + | tig0005313:3747-3766 | Msa1342250:CDS | 45.0% | |
| CAAGCTTATTCAGGTCCCAT+AGG | + | tig0005313:3867-3886 | Msa1342250:CDS | 45.0% | |
| AAACACTGCGAACGATGCAT+TGG | + | tig0005313:3926-3945 | Msa1342250:CDS | 45.0% | |
| ACCATACAAAGGAACCCACA+AGG | + | tig0005313:3959-3978 | Msa1342250:CDS | 45.0% | |
| TCCTTGTGGGTTCCTTTGTA+TGG | - | tig0005313:3963-3982 | Msa1342250:intergenic | 45.0% | |
| CAAAGGAACCCACAAGGATA+AGG | + | tig0005313:3965-3984 | Msa1342250:CDS | 45.0% | |
| ACCCACAAGGATAAGGGTAA+AGG | + | tig0005313:3972-3991 | Msa1342250:CDS | 45.0% | |
| !! | AAAAAAATGATATATAAAAA+AGG | + | tig0005313:2808-2827 | Msa1342250:intron | 5.0% |
| TGGCTCTCGAGGTTTGAACA+AGG | - | tig0005313:1241-1260 | Msa1342250:intergenic | 50.0% | |
| ! | GAGGCACTCTTCCGTTCTAT+TGG | - | tig0005313:1345-1364 | Msa1342250:intergenic | 50.0% |
| GATTGTTGACCGAGACTCTG+AGG | + | tig0005313:2042-2061 | Msa1342250:intron | 50.0% | |
| AGATAGATACATCCTCGGGC+TGG | - | tig0005313:2088-2107 | Msa1342250:intergenic | 50.0% | |
| !! | GGTGGGTTCTGGTTTATGGT+AGG | + | tig0005313:2183-2202 | Msa1342250:intron | 50.0% |
| ! | TTGAGAGAGTTGGGGCCTTT+TGG | - | tig0005313:2289-2308 | Msa1342250:intergenic | 50.0% |
| TCCTTGGTTGGGGGATACTT+CGG | - | tig0005313:2680-2699 | Msa1342250:intergenic | 50.0% | |
| GTATCCCCCAACCAAGGAAA+TGG | + | tig0005313:2682-2701 | Msa1342250:CDS | 50.0% | |
| !! | GCCAGAAGGTATCTGCTCTT+AGG | + | tig0005313:2728-2747 | Msa1342250:intron | 50.0% |
| GCCTAAGAGCAGATACCTTC+TGG | - | tig0005313:2732-2751 | Msa1342250:intergenic | 50.0% | |
| TTTCCTCCGCCACATGAAGA+TGG | + | tig0005313:3738-3757 | Msa1342250:CDS | 50.0% | |
| TTGAGAGGAGATACCGAGTC+TGG | + | tig0005313:4218-4237 | Msa1342250:three_prime_UTR | 50.0% | |
| ACAAGGGGAAGAGCAGAAGG+TGG | - | tig0005313:1300-1319 | Msa1342250:intergenic | 55.0% | |
| TCGACAAGGGGAAGAGCAGA+AGG | - | tig0005313:1303-1322 | Msa1342250:intergenic | 55.0% | |
| TGGAATTCTGTACCAGCCCG+AGG | + | tig0005313:2073-2092 | Msa1342250:intron | 55.0% | |
| ! | TCCGAAGTATCCCCCAACCA+AGG | + | tig0005313:2676-2695 | Msa1342250:CDS | 55.0% |
| TCCTCCATCAGCTCGAGCTT+TGG | - | tig0005313:3268-3287 | Msa1342250:intergenic | 55.0% | |
| !! | AGAAGCATCGGACTCGTGAC+CGG | + | tig0005313:3289-3308 | Msa1342250:CDS | 55.0% |
| ! | CAGGAGCAGCTTTTACAGCC+CGG | - | tig0005313:3311-3330 | Msa1342250:intergenic | 55.0% |
| !! | TCAGCATTGGCTTCAGGAGC+AGG | - | tig0005313:3330-3349 | Msa1342250:intergenic | 55.0% |
| !! | TGGAGCTCAGCATTGGCTTC+AGG | - | tig0005313:3336-3355 | Msa1342250:intergenic | 55.0% |
| TGTCCATCTTCATGTGGCGG+AGG | - | tig0005313:3744-3763 | Msa1342250:intergenic | 55.0% | |
| GGCGTGACGATGAAGCCAGA+AGG | + | tig0005313:2714-2733 | Msa1342250:CDS | 60.0% | |
| GCAGCCAAAGCTCGAGCTGA+TGG | + | tig0005313:3261-3280 | Msa1342250:CDS | 60.0% | |
| GCCAAAGCTCGAGCTGATGG+AGG | + | tig0005313:3264-3283 | Msa1342250:CDS | 60.0% | |
| !! | GAAGCATCGGACTCGTGACC+GGG | + | tig0005313:3290-3309 | Msa1342250:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0005313 | gene | 1156 | 4388 | 1156 | ID=Msa1342250;Name=Msa1342250 |
| tig0005313 | mRNA | 1156 | 4388 | 1156 | ID=Msa1342250-mRNA-1;Parent=Msa1342250;Name=Msa1342250-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0.66|0.5|1|1|1|4|375|257 |
| tig0005313 | exon | 1156 | 1383 | 1156 | ID=Msa1342250-mRNA-1:exon:3525;Parent=Msa1342250-mRNA-1 |
| tig0005313 | exon | 2635 | 2735 | 2635 | ID=Msa1342250-mRNA-1:exon:3526;Parent=Msa1342250-mRNA-1 |
| tig0005313 | exon | 3251 | 3368 | 3251 | ID=Msa1342250-mRNA-1:exon:3527;Parent=Msa1342250-mRNA-1 |
| tig0005313 | exon | 3687 | 4388 | 3687 | ID=Msa1342250-mRNA-1:exon:3528;Parent=Msa1342250-mRNA-1 |
| tig0005313 | CDS | 1156 | 1383 | 1156 | ID=Msa1342250-mRNA-1:cds;Parent=Msa1342250-mRNA-1 |
| tig0005313 | CDS | 2635 | 2735 | 2635 | ID=Msa1342250-mRNA-1:cds;Parent=Msa1342250-mRNA-1 |
| tig0005313 | CDS | 3251 | 3368 | 3251 | ID=Msa1342250-mRNA-1:cds;Parent=Msa1342250-mRNA-1 |
| tig0005313 | CDS | 3687 | 4013 | 3687 | ID=Msa1342250-mRNA-1:cds;Parent=Msa1342250-mRNA-1 |
| tig0005313 | three_prime_UTR | 4014 | 4388 | 4014 | ID=Msa1342250-mRNA-1:three_prime_utr;Parent=Msa1342250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
