Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1342450 | XP_013467365.1 | 96.221 | 344 | 13 | 0 | 1 | 344 | 1 | 344 | 0.0 | 690 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1342450 | A0A072VHZ9 | 96.221 | 344 | 13 | 0 | 1 | 344 | 1 | 344 | 0.0 | 690 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1342450 | Msa1390310 | 0.803496 | 3.391348e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1342450 | MtrunA17_Chr1g0171181 | 88.081 | 344 | 12 | 1 | 1 | 344 | 1 | 315 | 0.0 | 613 |
Msa1342450 | MtrunA17_Chr1g0178721 | 61.877 | 341 | 129 | 1 | 1 | 340 | 33 | 373 | 4.39e-163 | 460 |
Msa1342450 | MtrunA17_Chr1g0178741 | 61.877 | 341 | 129 | 1 | 1 | 340 | 58 | 398 | 3.17e-162 | 459 |
Msa1342450 | MtrunA17_Chr2g0321341 | 49.855 | 345 | 163 | 4 | 1 | 342 | 1 | 338 | 4.51e-125 | 362 |
Msa1342450 | MtrunA17_Chr2g0321351 | 46.104 | 308 | 156 | 4 | 37 | 341 | 45 | 345 | 6.96e-98 | 294 |
Msa1342450 | MtrunA17_Chr4g0026421 | 41.477 | 352 | 187 | 6 | 1 | 341 | 1 | 344 | 9.61e-97 | 291 |
Msa1342450 | MtrunA17_Chr3g0136021 | 44.444 | 306 | 159 | 5 | 41 | 342 | 130 | 428 | 1.11e-89 | 275 |
Msa1342450 | MtrunA17_Chr4g0029971 | 29.283 | 321 | 186 | 8 | 36 | 324 | 119 | 430 | 3.38e-37 | 139 |
Msa1342450 | MtrunA17_Chr7g0263721 | 25.620 | 363 | 238 | 6 | 5 | 338 | 121 | 480 | 5.09e-36 | 136 |
Msa1342450 | MtrunA17_Chr2g0321371 | 52.941 | 51 | 24 | 0 | 274 | 324 | 1 | 51 | 1.92e-14 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1342450 | AT1G74300.1 | 65.046 | 329 | 113 | 2 | 14 | 340 | 16 | 344 | 7.18e-156 | 441 |
Msa1342450 | AT2G36290.1 | 59.475 | 343 | 138 | 1 | 1 | 342 | 17 | 359 | 7.55e-154 | 436 |
Msa1342450 | AT2G36290.2 | 59.475 | 343 | 138 | 1 | 1 | 342 | 3 | 345 | 1.18e-153 | 436 |
Msa1342450 | AT1G74280.1 | 60.125 | 321 | 127 | 1 | 21 | 340 | 41 | 361 | 1.03e-142 | 409 |
Msa1342450 | AT1G74290.1 | 59.509 | 326 | 127 | 4 | 15 | 336 | 34 | 358 | 3.91e-139 | 399 |
Msa1342450 | AT3G48410.1 | 52.059 | 340 | 163 | 0 | 2 | 341 | 33 | 372 | 6.17e-138 | 397 |
Msa1342450 | AT3G48410.2 | 52.059 | 340 | 163 | 0 | 2 | 341 | 75 | 414 | 2.67e-137 | 397 |
Msa1342450 | AT3G54240.1 | 54.354 | 333 | 152 | 0 | 8 | 340 | 12 | 344 | 2.96e-137 | 394 |
Msa1342450 | AT5G22460.2 | 51.603 | 343 | 162 | 2 | 1 | 342 | 1 | 340 | 2.06e-133 | 384 |
Msa1342450 | AT5G22460.3 | 51.603 | 343 | 162 | 2 | 1 | 342 | 1 | 340 | 2.06e-133 | 384 |
Msa1342450 | AT5G22460.1 | 51.603 | 343 | 162 | 2 | 1 | 342 | 1 | 340 | 2.06e-133 | 384 |
Msa1342450 | AT1G74300.2 | 63.265 | 245 | 89 | 1 | 97 | 340 | 1 | 245 | 1.79e-111 | 325 |
Msa1342450 | AT3G03240.1 | 45.033 | 302 | 158 | 4 | 39 | 338 | 35 | 330 | 1.13e-94 | 285 |
Msa1342450 | AT3G44510.2 | 44.118 | 306 | 161 | 4 | 41 | 341 | 8 | 308 | 5.95e-88 | 268 |
Msa1342450 | AT3G03230.1 | 43.137 | 306 | 165 | 4 | 39 | 342 | 35 | 333 | 9.49e-88 | 267 |
Msa1342450 | AT1G08310.2 | 42.038 | 314 | 169 | 5 | 33 | 341 | 2 | 307 | 5.74e-85 | 259 |
Msa1342450 | AT1G08310.1 | 42.357 | 314 | 165 | 6 | 33 | 341 | 2 | 304 | 9.15e-84 | 256 |
Msa1342450 | AT3G44510.3 | 48.980 | 196 | 95 | 2 | 41 | 236 | 8 | 198 | 2.38e-61 | 196 |
Msa1342450 | AT1G08310.3 | 46.890 | 209 | 105 | 3 | 33 | 240 | 2 | 205 | 1.12e-60 | 195 |
Msa1342450 | AT3G44510.1 | 37.745 | 204 | 120 | 3 | 143 | 341 | 1 | 202 | 7.37e-45 | 153 |
Msa1342450 | AT3G44510.5 | 37.745 | 204 | 120 | 3 | 143 | 341 | 1 | 202 | 7.37e-45 | 153 |
Msa1342450 | AT3G44510.4 | 37.745 | 204 | 120 | 3 | 143 | 341 | 1 | 202 | 7.37e-45 | 153 |
Msa1342450 | AT5G02970.1 | 25.278 | 360 | 214 | 7 | 5 | 324 | 126 | 470 | 1.80e-30 | 121 |
Msa1342450 | AT3G09690.1 | 26.154 | 325 | 193 | 9 | 36 | 324 | 160 | 473 | 2.28e-28 | 115 |
Msa1342450 | AT3G09690.2 | 26.154 | 325 | 193 | 9 | 36 | 324 | 160 | 473 | 2.28e-28 | 115 |
Find 99 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGACTGTTTGTTTCAAATTT+TGG | 0.115473 | tig0005653:+223 | Msa1342450:intergenic |
TGAACTTTGATTGTATTATC+TGG | 0.206245 | tig0005653:+574 | Msa1342450:intergenic |
AATGGGTGGCCAAGCTGTTT+GGG | 0.208672 | tig0005653:-2194 | Msa1342450:CDS |
CTTTATCCTTGGTGCTGTTA+TGG | 0.220069 | tig0005653:+2583 | Msa1342450:intergenic |
CAATGGGTGGCCAAGCTGTT+TGG | 0.228990 | tig0005653:-2195 | Msa1342450:CDS |
GCTCCCTTAAAAGTGAAAAT+TGG | 0.246316 | tig0005653:-271 | Msa1342450:three_prime_UTR |
TTTATCCTTGGTGCTGTTAT+GGG | 0.264845 | tig0005653:+2584 | Msa1342450:intergenic |
CTGGTGAACCACATGTTCTT+GGG | 0.267606 | tig0005653:+2615 | Msa1342450:intergenic |
GTTAATTTGCTTTAGATTCT+CGG | 0.270263 | tig0005653:-308 | Msa1342450:three_prime_UTR |
CCATAATTGGATTTGGAACT+TGG | 0.273799 | tig0005653:-630 | Msa1342450:CDS |
ATATGTCGGGACACCATAAT+TGG | 0.290722 | tig0005653:-643 | Msa1342450:CDS |
CCAAGTTCCAAATCCAATTA+TGG | 0.290795 | tig0005653:+630 | Msa1342450:intergenic |
GCACTCACTTCCTCGACATT+TGG | 0.310843 | tig0005653:+439 | Msa1342450:intergenic |
ATGTCCCATGGCTTACATTC+TGG | 0.316887 | tig0005653:-916 | Msa1342450:CDS |
CGGGACACCATAATTGGATT+TGG | 0.319529 | tig0005653:-637 | Msa1342450:CDS |
CCTGGTGAACCACATGTTCT+TGG | 0.342532 | tig0005653:+2614 | Msa1342450:intergenic |
CCTACATCAAGTGTAGTAAA+AGG | 0.347381 | tig0005653:-872 | Msa1342450:CDS |
TGGAACACCATGTTCTTTGT+AGG | 0.351078 | tig0005653:+2538 | Msa1342450:intergenic |
TTAGGGGTTGCTTGAAGAAT+TGG | 0.352823 | tig0005653:-2362 | Msa1342450:intron |
GTCCAGCACCTTGCAATTCA+TGG | 0.359218 | tig0005653:+470 | Msa1342450:intergenic |
GCTTGCAGATAAGCTGGAAT+TGG | 0.360953 | tig0005653:-2245 | Msa1342450:CDS |
TCTGGTGGTTTACTCAAAAC+TGG | 0.363902 | tig0005653:-898 | Msa1342450:CDS |
ATACAATCAAAGTTCATCTA+TGG | 0.365095 | tig0005653:-567 | Msa1342450:CDS |
AATCCTCAAAACTCAGTTGA+TGG | 0.379935 | tig0005653:-413 | Msa1342450:CDS |
CCATCTCTCAGCTTTATCCT+TGG | 0.381172 | tig0005653:+2572 | Msa1342450:intergenic |
ATTGTATTCATACATGGGTT+TGG | 0.388797 | tig0005653:-2494 | Msa1342450:CDS |
GTCAATATCACAATTACGTT+GGG | 0.396519 | tig0005653:-2788 | Msa1342450:five_prime_UTR |
ATATATCGTTGCAGCGTAGC+AGG | 0.408666 | tig0005653:+520 | Msa1342450:intergenic |
TAGGGGTTGCTTGAAGAATT+GGG | 0.419223 | tig0005653:-2361 | Msa1342450:CDS |
TTCTTGCTAGCTAATTGTCT+TGG | 0.429772 | tig0005653:+2518 | Msa1342450:intergenic |
GCCTTTGTGGACATGTTGTA+AGG | 0.431803 | tig0005653:+989 | Msa1342450:intergenic |
TGAAAACAATTGATAAATCT+CGG | 0.433109 | tig0005653:+828 | Msa1342450:intergenic |
TTGTGCAGGTTGCTCATAAT+AGG | 0.436529 | tig0005653:+967 | Msa1342450:intergenic |
GAGTTTGGCTCTTGATATTG+AGG | 0.442872 | tig0005653:-2269 | Msa1342450:CDS |
GCTGAGAGATGGAAGACATT+TGG | 0.444386 | tig0005653:-2561 | Msa1342450:CDS |
GAAAACAATTGATAAATCTC+GGG | 0.447754 | tig0005653:+829 | Msa1342450:intergenic |
GAACTTTGATTGTATTATCT+GGG | 0.448382 | tig0005653:+575 | Msa1342450:intergenic |
TACCATGAATTGCAAGGTGC+TGG | 0.459267 | tig0005653:-472 | Msa1342450:CDS |
TTGATTGTATTATCTGGGAA+AGG | 0.469632 | tig0005653:+580 | Msa1342450:intergenic |
TTGCTCATAATAGGCCTTTG+TGG | 0.470685 | tig0005653:+976 | Msa1342450:intergenic |
GTCTATCAACAAAGAACATC+AGG | 0.473018 | tig0005653:-801 | Msa1342450:intron |
CACAATTACGTTGGGAAAGA+CGG | 0.480454 | tig0005653:-2780 | Msa1342450:five_prime_UTR |
AAGAAGATTGTATTCATACA+TGG | 0.487358 | tig0005653:-2500 | Msa1342450:CDS |
TGAGGAGCTTGCAGATAAGC+TGG | 0.489202 | tig0005653:-2251 | Msa1342450:CDS |
ATCCTTGGTGCTGTTATGGG+TGG | 0.489509 | tig0005653:+2587 | Msa1342450:intergenic |
TGATTGTATTATCTGGGAAA+GGG | 0.492417 | tig0005653:+581 | Msa1342450:intergenic |
CTTGCAGATAAGCTGGAATT+GGG | 0.497644 | tig0005653:-2244 | Msa1342450:CDS |
GCTGTTATGGGTGGACCACC+TGG | 0.508255 | tig0005653:+2596 | Msa1342450:intergenic |
CATAATTGGATTTGGAACTT+GGG | 0.510583 | tig0005653:-629 | Msa1342450:CDS |
TCCCATGGCTTACATTCTGG+TGG | 0.512659 | tig0005653:-913 | Msa1342450:CDS |
CGCCACCAGTAGTTTACCAC+TGG | 0.519322 | tig0005653:+1019 | Msa1342450:intergenic |
TGTCAATATCACAATTACGT+TGG | 0.521508 | tig0005653:-2789 | Msa1342450:five_prime_UTR |
TCTCGGGGAGACAGAACAGC+AGG | 0.521518 | tig0005653:+845 | Msa1342450:intergenic |
GCAACCTGCACAAGACCAAT+GGG | 0.529291 | tig0005653:-957 | Msa1342450:CDS |
ATGGGTGGCCAAGCTGTTTG+GGG | 0.530077 | tig0005653:-2193 | Msa1342450:CDS |
TTTATGACAACAGACTTGCT+GGG | 0.539829 | tig0005653:-1057 | Msa1342450:intron |
GCCTCAAATTCATTCCTCAC+AGG | 0.540453 | tig0005653:-2168 | Msa1342450:intron |
TGAGCACGAATCTATATGTC+GGG | 0.544660 | tig0005653:-656 | Msa1342450:CDS |
TGAGGCAACCCCAAACAGCT+TGG | 0.544790 | tig0005653:+2185 | Msa1342450:intergenic |
CCAAGAACATGTGGTTCACC+AGG | 0.544937 | tig0005653:-2614 | Msa1342450:CDS |
GAGTTGCTCATTATGTCCCA+TGG | 0.548595 | tig0005653:-928 | Msa1342450:CDS |
TCATTTGATAGACCAGGGTA+TGG | 0.549328 | tig0005653:-2325 | Msa1342450:CDS |
AGCAACCTGCACAAGACCAA+TGG | 0.551215 | tig0005653:-958 | Msa1342450:CDS |
AGAAGATTGTATTCATACAT+GGG | 0.557044 | tig0005653:-2499 | Msa1342450:CDS |
AGTGCCCATTGGTCTTGTGC+AGG | 0.557180 | tig0005653:+953 | Msa1342450:intergenic |
GTGGTAAACTACTGGTGGCG+TGG | 0.560154 | tig0005653:-1016 | Msa1342450:CDS |
ACCTGTGAGGAATGAATTTG+AGG | 0.560787 | tig0005653:+2167 | Msa1342450:intergenic |
TGGTGAACCACATGTTCTTG+GGG | 0.561443 | tig0005653:+2616 | Msa1342450:intergenic |
CATTGCAACAAACCTTCCTA+AGG | 0.566740 | tig0005653:-2450 | Msa1342450:intron |
AATTCATGGTATTGAATCCA+CGG | 0.569030 | tig0005653:+484 | Msa1342450:intergenic |
AATTAATTATTACCTTAGGA+AGG | 0.569133 | tig0005653:+2438 | Msa1342450:intergenic |
ATATATATTCACTTGAGTGT+TGG | 0.569473 | tig0005653:-2754 | Msa1342450:five_prime_UTR |
GAGCAACTCGAAGTGCCCAT+TGG | 0.571357 | tig0005653:+942 | Msa1342450:intergenic |
TGGTAAACTACTGGTGGCGT+GGG | 0.575501 | tig0005653:-1015 | Msa1342450:CDS |
ATCAAAGTTCATCTATGGCA+AGG | 0.584167 | tig0005653:-562 | Msa1342450:CDS |
TGACTCCAGTGGTAAACTAC+TGG | 0.587202 | tig0005653:-1024 | Msa1342450:CDS |
GTGAGCACGAATCTATATGT+CGG | 0.590263 | tig0005653:-657 | Msa1342450:CDS |
GTTGTGTCATTTGATAGACC+AGG | 0.594934 | tig0005653:-2331 | Msa1342450:CDS |
AACCACCAGAATGTAAGCCA+TGG | 0.595126 | tig0005653:+911 | Msa1342450:intergenic |
CCAAGGATAAAGCTGAGAGA+TGG | 0.598249 | tig0005653:-2572 | Msa1342450:CDS |
AAAGGGTTATCAAGATCAAG+TGG | 0.600862 | tig0005653:+598 | Msa1342450:intergenic |
TATATCGTTGCAGCGTAGCA+GGG | 0.601081 | tig0005653:+521 | Msa1342450:intergenic |
TTGTGTCATTTGATAGACCA+GGG | 0.602205 | tig0005653:-2330 | Msa1342450:CDS |
CATTTGGCCTACAAAGAACA+TGG | 0.621530 | tig0005653:-2545 | Msa1342450:CDS |
CTCCAGTGGTAAACTACTGG+TGG | 0.624685 | tig0005653:-1021 | Msa1342450:CDS |
ACCACCAGAATGTAAGCCAT+GGG | 0.627278 | tig0005653:+912 | Msa1342450:intergenic |
TTATGACAACAGACTTGCTG+GGG | 0.632491 | tig0005653:-1056 | Msa1342450:intron |
AAAACAATTGATAAATCTCG+GGG | 0.637290 | tig0005653:+830 | Msa1342450:intergenic |
ACACTTGTTTCCAAATGTCG+AGG | 0.640167 | tig0005653:-449 | Msa1342450:CDS |
GCATCACTTTCTCCATACCC+TGG | 0.644710 | tig0005653:+2313 | Msa1342450:intergenic |
ATTCAATACCATGAATTGCA+AGG | 0.645032 | tig0005653:-478 | Msa1342450:CDS |
CAGTCACAAGTGAAACAACA+AGG | 0.646584 | tig0005653:-679 | Msa1342450:CDS |
GGTGAACCACATGTTCTTGG+GGG | 0.653985 | tig0005653:+2617 | Msa1342450:intergenic |
TCCTTACAACATGTCCACAA+AGG | 0.672781 | tig0005653:-990 | Msa1342450:CDS |
AGAACATGTGGTTCACCAGG+TGG | 0.673501 | tig0005653:-2611 | Msa1342450:CDS |
AATTAACAGTGTTACCTGTG+AGG | 0.684658 | tig0005653:+2154 | Msa1342450:intergenic |
GGCAACATTGATGACTCCAG+TGG | 0.685628 | tig0005653:-1035 | Msa1342450:CDS |
CTCGGGGAGACAGAACAGCA+GGG | 0.713200 | tig0005653:+846 | Msa1342450:intergenic |
GTCCACCCATAACAGCACCA+AGG | 0.749684 | tig0005653:-2589 | Msa1342450:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTTTTAAATAAAAATA+CGG | + | tig0005653:1481-1500 | Msa1342450:intergenic | 0.0% |
!! | TTAAAAAAATAAATTAATAA+TGG | - | tig0005653:1978-1997 | Msa1342450:intron | 0.0% |
!!! | TATTTATTTTTAATTTGGTT+AGG | - | tig0005653:679-698 | Msa1342450:CDS | 10.0% |
!!! | ATTTATTTTTAATTTGGTTA+GGG | - | tig0005653:680-699 | Msa1342450:intron | 10.0% |
!! | AAAATAATATTAAAAATGTG+TGG | + | tig0005653:952-971 | Msa1342450:intergenic | 10.0% |
!!! | CAACATTTTTATTATTTTTT+AGG | - | tig0005653:1087-1106 | Msa1342450:intron | 10.0% |
!!! | TTCAAAAAAAAATATTTTAC+GGG | + | tig0005653:1161-1180 | Msa1342450:intergenic | 10.0% |
!!! | TTTGTATTTTTTTTTTGAAA+GGG | - | tig0005653:1871-1890 | Msa1342450:intron | 10.0% |
!!! | GTTTTTAATTAAAAATTGAA+AGG | - | tig0005653:2725-2744 | Msa1342450:five_prime_UTR | 10.0% |
!!! | AATTTTCAAAATCATACTTA+AGG | + | tig0005653:649-668 | Msa1342450:intergenic | 15.0% |
!!! | TTTATTTTTAATTTGGTTAG+GGG | - | tig0005653:681-700 | Msa1342450:intron | 15.0% |
!!! | TCAAAAAAAAATATTTTACG+GGG | + | tig0005653:1160-1179 | Msa1342450:intergenic | 15.0% |
!!! | AATTTGAAGATTTTTCATTT+TGG | + | tig0005653:1377-1396 | Msa1342450:intergenic | 15.0% |
!! | ATATATTTCATTGAAAAAGT+TGG | - | tig0005653:1549-1568 | Msa1342450:intron | 15.0% |
!! | ATAAAACTCAAATTGAATAA+TGG | - | tig0005653:1689-1708 | Msa1342450:intron | 15.0% |
!!! | AATTGATTTAAATTCAATAC+TGG | + | tig0005653:1782-1801 | Msa1342450:intergenic | 15.0% |
!!! | GTTTGTATTTTTTTTTTGAA+AGG | - | tig0005653:1870-1889 | Msa1342450:intron | 15.0% |
!!! | AATTTTGTTGATTGGAATTT+TGG | - | tig0005653:390-409 | Msa1342450:exon | 20.0% |
!!! | ATTTTGTTGATTGGAATTTT+GGG | - | tig0005653:391-410 | Msa1342450:exon | 20.0% |
!! | AATTAATTATTACCTTAGGA+AGG | + | tig0005653:624-643 | Msa1342450:intergenic | 20.0% |
!!! | AAAATTTGCTCAAATTAACA+GGG | + | tig0005653:1302-1321 | Msa1342450:intergenic | 20.0% |
!! | TGAAAAATCTTCAAATTACA+AGG | - | tig0005653:1380-1399 | Msa1342450:intron | 20.0% |
!!! | TCCAAAAAAATATTTTACAG+AGG | - | tig0005653:1409-1428 | Msa1342450:intron | 20.0% |
!!! | CCAAAAAAATATTTTACAGA+GGG | - | tig0005653:1410-1429 | Msa1342450:intron | 20.0% |
!!! | ATGTAAATCATAGTTGTTTT+TGG | + | tig0005653:1641-1660 | Msa1342450:intergenic | 20.0% |
!! | TGAAAACAATTGATAAATCT+CGG | + | tig0005653:2234-2253 | Msa1342450:intergenic | 20.0% |
! | ATATATATTCACTTGAGTGT+TGG | - | tig0005653:305-324 | Msa1342450:three_prime_UTR | 25.0% |
!! | ATTGCATCAATTTTGTTGAT+TGG | - | tig0005653:382-401 | Msa1342450:three_prime_UTR | 25.0% |
! | AAGAAGATTGTATTCATACA+TGG | - | tig0005653:559-578 | Msa1342450:CDS | 25.0% |
! | AGAAGATTGTATTCATACAT+GGG | - | tig0005653:560-579 | Msa1342450:CDS | 25.0% |
! | GGTGAATTAATTATTACCTT+AGG | + | tig0005653:628-647 | Msa1342450:intergenic | 25.0% |
!! | AAACTCTTTACACTTCTTTT+TGG | + | tig0005653:776-795 | Msa1342450:intergenic | 25.0% |
!! | AAAAAGAAGTGTAAAGAGTT+TGG | - | tig0005653:775-794 | Msa1342450:intron | 25.0% |
!! | TATTTTACGGGGAAAAAAAA+CGG | + | tig0005653:1149-1168 | Msa1342450:intergenic | 25.0% |
! | CAAAAAATCTTCGAATTACA+AGG | + | tig0005653:1190-1209 | Msa1342450:intergenic | 25.0% |
!!! | CTTGTAATTCGAAGATTTTT+TGG | - | tig0005653:1188-1207 | Msa1342450:intron | 25.0% |
!!! | ATTCGAAGATTTTTTGGTTT+TGG | - | tig0005653:1194-1213 | Msa1342450:intron | 25.0% |
!! | TAAATTTGCTCAAATTACAG+GGG | + | tig0005653:1240-1259 | Msa1342450:intergenic | 25.0% |
!! | CTAAATTTGCTCAAATTACA+GGG | + | tig0005653:1241-1260 | Msa1342450:intergenic | 25.0% |
!! | AAATTTGCTCAAATTACAAG+GGG | + | tig0005653:1270-1289 | Msa1342450:intergenic | 25.0% |
!! | GAAATTTGCTCAAATTACAA+GGG | + | tig0005653:1271-1290 | Msa1342450:intergenic | 25.0% |
! | CTTGTAATTTGAGCAAATTT+CGG | - | tig0005653:1270-1289 | Msa1342450:intron | 25.0% |
!! | AAATTTGCTCAAATTAACAG+GGG | + | tig0005653:1301-1320 | Msa1342450:intergenic | 25.0% |
!! | CAAAATTTGCTCAAATTAAC+AGG | + | tig0005653:1303-1322 | Msa1342450:intergenic | 25.0% |
!!! | CTGTTAATTTGAGCAAATTT+TGG | - | tig0005653:1301-1320 | Msa1342450:intron | 25.0% |
! | ACTGTATAAAATCGAAGATA+TGG | + | tig0005653:1338-1357 | Msa1342450:intergenic | 25.0% |
! | TATACAGTCAAAATTCATGA+AGG | - | tig0005653:1350-1369 | Msa1342450:intron | 25.0% |
!!! | CCCTCTGTAAAATATTTTTT+TGG | + | tig0005653:1413-1432 | Msa1342450:intergenic | 25.0% |
!! | AACAATAGATCTCTGAATTT+TGG | + | tig0005653:1581-1600 | Msa1342450:intergenic | 25.0% |
!! | AGATGACTAAAATCTTGTTT+CGG | - | tig0005653:1737-1756 | Msa1342450:intron | 25.0% |
! | TTAAAGTGTGTAATGAATGT+AGG | - | tig0005653:1801-1820 | Msa1342450:intron | 25.0% |
!!! | GAATACAATTTTTTTTCCCA+GGG | + | tig0005653:1948-1967 | Msa1342450:intergenic | 25.0% |
!!! | TGAATACAATTTTTTTTCCC+AGG | + | tig0005653:1949-1968 | Msa1342450:intergenic | 25.0% |
! | AAAACAATTGATAAATCTCG+GGG | + | tig0005653:2232-2251 | Msa1342450:intergenic | 25.0% |
! | GAAAACAATTGATAAATCTC+GGG | + | tig0005653:2233-2252 | Msa1342450:intergenic | 25.0% |
! | GAACTTTGATTGTATTATCT+GGG | + | tig0005653:2487-2506 | Msa1342450:intergenic | 25.0% |
! | TGAACTTTGATTGTATTATC+TGG | + | tig0005653:2488-2507 | Msa1342450:intergenic | 25.0% |
! | ATACAATCAAAGTTCATCTA+TGG | - | tig0005653:2492-2511 | Msa1342450:CDS | 25.0% |
!!! | GTTAATTTGCTTTAGATTCT+CGG | - | tig0005653:2751-2770 | Msa1342450:five_prime_UTR | 25.0% |
!!! | CTTCCAATTTTCACTTTTAA+GGG | + | tig0005653:2794-2813 | Msa1342450:intergenic | 25.0% |
!!! | ACTTCCAATTTTCACTTTTA+AGG | + | tig0005653:2795-2814 | Msa1342450:intergenic | 25.0% |
TGTCAATATCACAATTACGT+TGG | - | tig0005653:270-289 | Msa1342450:three_prime_UTR | 30.0% | |
GTCAATATCACAATTACGTT+GGG | - | tig0005653:271-290 | Msa1342450:three_prime_UTR | 30.0% | |
ATTGTATTCATACATGGGTT+TGG | - | tig0005653:565-584 | Msa1342450:CDS | 30.0% | |
!! | GGATCTAAGTTTTATGTCAT+GGG | - | tig0005653:836-855 | Msa1342450:CDS | 30.0% |
! | TTATGTCATGGGATTTTCAA+TGG | - | tig0005653:847-866 | Msa1342450:CDS | 30.0% |
! | TATGTCATGGGATTTTCAAT+GGG | - | tig0005653:848-867 | Msa1342450:CDS | 30.0% |
GTGTTTAACCTCTGTAATAT+AGG | - | tig0005653:1117-1136 | Msa1342450:intron | 30.0% | |
! | AAATTTGCTCAAATTACAGG+GGG | + | tig0005653:1239-1258 | Msa1342450:intergenic | 30.0% |
! | CCTAAATTTGCTCAAATTAC+AGG | + | tig0005653:1242-1261 | Msa1342450:intergenic | 30.0% |
CCTGTAATTTGAGCAAATTT+AGG | - | tig0005653:1239-1258 | Msa1342450:intron | 30.0% | |
! | CGAAATTTGCTCAAATTACA+AGG | + | tig0005653:1272-1291 | Msa1342450:intergenic | 30.0% |
! | AATTTGCTCAAATTAACAGG+GGG | + | tig0005653:1300-1319 | Msa1342450:intergenic | 30.0% |
ATAAAATCGAAGATATGGCA+AGG | + | tig0005653:1333-1352 | Msa1342450:intergenic | 30.0% | |
TCGAAAATGACCTATATTAC+AGG | - | tig0005653:1438-1457 | Msa1342450:intron | 30.0% | |
CGAAAATGACCTATATTACA+GGG | - | tig0005653:1439-1458 | Msa1342450:intron | 30.0% | |
GAAAATGACCTATATTACAG+GGG | - | tig0005653:1440-1459 | Msa1342450:intron | 30.0% | |
AAAATGACCTATATTACAGG+GGG | - | tig0005653:1441-1460 | Msa1342450:intron | 30.0% | |
!!! | ATAGTTGTTTTTGGTTGAGT+AGG | + | tig0005653:1632-1651 | Msa1342450:intergenic | 30.0% |
TCGGTTCTTCCTAAAAAAAA+AGG | - | tig0005653:1756-1775 | Msa1342450:intron | 30.0% | |
!!! | CAATACTGGCCTTTTTTTTT+AGG | + | tig0005653:1768-1787 | Msa1342450:intergenic | 30.0% |
AAAATGCAAAAAGTAAACCC+TGG | - | tig0005653:1928-1947 | Msa1342450:intron | 30.0% | |
AAATGCAAAAAGTAAACCCT+GGG | - | tig0005653:1929-1948 | Msa1342450:intron | 30.0% | |
TAGTCGTTAGATCAGTATAA+AGG | + | tig0005653:2348-2367 | Msa1342450:intergenic | 30.0% | |
! | CATAATTGGATTTGGAACTT+GGG | - | tig0005653:2430-2449 | Msa1342450:intron | 30.0% |
TGATTGTATTATCTGGGAAA+GGG | + | tig0005653:2481-2500 | Msa1342450:intergenic | 30.0% | |
TTGATTGTATTATCTGGGAA+AGG | + | tig0005653:2482-2501 | Msa1342450:intergenic | 30.0% | |
ATATTGTTCAAAAACTTCCG+TGG | - | tig0005653:2558-2577 | Msa1342450:CDS | 30.0% | |
! | AATTCATGGTATTGAATCCA+CGG | + | tig0005653:2578-2597 | Msa1342450:intergenic | 30.0% |
ATTCAATACCATGAATTGCA+AGG | - | tig0005653:2581-2600 | Msa1342450:CDS | 30.0% | |
! | GGACTGTTTGTTTCAAATTT+TGG | + | tig0005653:2839-2858 | Msa1342450:intergenic | 30.0% |
!! | GGCACTAACATAATTTTGAC+TGG | - | tig0005653:326-345 | Msa1342450:three_prime_UTR | 35.0% |
!! | TTTATCCTTGGTGCTGTTAT+GGG | + | tig0005653:478-497 | Msa1342450:intergenic | 35.0% |
TTCTTGCTAGCTAATTGTCT+TGG | + | tig0005653:544-563 | Msa1342450:intergenic | 35.0% | |
!! | TTGTGTCATTTGATAGACCA+GGG | - | tig0005653:729-748 | Msa1342450:intron | 35.0% |
!! | GGGATCTAAGTTTTATGTCA+TGG | - | tig0005653:835-854 | Msa1342450:CDS | 35.0% |
AATTAACAGTGTTACCTGTG+AGG | + | tig0005653:908-927 | Msa1342450:intergenic | 35.0% | |
AAAAATGTGTGGTCTACGAT+AGG | + | tig0005653:941-960 | Msa1342450:intergenic | 35.0% | |
GGAAATGACCTATATTACAG+AGG | + | tig0005653:1128-1147 | Msa1342450:intergenic | 35.0% | |
!!! | TTTTTGGTTTTGGACCTTCA+TGG | - | tig0005653:1204-1223 | Msa1342450:intron | 35.0% |
! | TGTTTTACCCCCTGTAATAT+AGG | + | tig0005653:1451-1470 | Msa1342450:intergenic | 35.0% |
!!! | TTGTTTTTGGTTGAGTAGGT+GGG | + | tig0005653:1628-1647 | Msa1342450:intergenic | 35.0% |
! | TTTTATGACAACAGACTTGC+TGG | - | tig0005653:2001-2020 | Msa1342450:intron | 35.0% |
! | TTTATGACAACAGACTTGCT+GGG | - | tig0005653:2002-2021 | Msa1342450:intron | 35.0% |
! | CCTTTTACTACACTTGATGT+AGG | + | tig0005653:2190-2209 | Msa1342450:intergenic | 35.0% |
CCTACATCAAGTGTAGTAAA+AGG | - | tig0005653:2187-2206 | Msa1342450:CDS | 35.0% | |
GTCTATCAACAAAGAACATC+AGG | - | tig0005653:2258-2277 | Msa1342450:CDS | 35.0% | |
CCAAGTTCCAAATCCAATTA+TGG | + | tig0005653:2432-2451 | Msa1342450:intergenic | 35.0% | |
! | CCATAATTGGATTTGGAACT+TGG | - | tig0005653:2429-2448 | Msa1342450:intron | 35.0% |
AAAGGGTTATCAAGATCAAG+TGG | + | tig0005653:2464-2483 | Msa1342450:intergenic | 35.0% | |
ATCAAAGTTCATCTATGGCA+AGG | - | tig0005653:2497-2516 | Msa1342450:CDS | 35.0% | |
AATCCTCAAAACTCAGTTGA+TGG | - | tig0005653:2646-2665 | Msa1342450:CDS | 35.0% | |
! | TATCCATCAACTGAGTTTTG+AGG | + | tig0005653:2652-2671 | Msa1342450:intergenic | 35.0% |
GCTCCCTTAAAAGTGAAAAT+TGG | - | tig0005653:2788-2807 | Msa1342450:five_prime_UTR | 35.0% | |
CACAATTACGTTGGGAAAGA+CGG | - | tig0005653:279-298 | Msa1342450:three_prime_UTR | 40.0% | |
!! | CTTTATCCTTGGTGCTGTTA+TGG | + | tig0005653:479-498 | Msa1342450:intergenic | 40.0% |
CATTTGGCCTACAAAGAACA+TGG | - | tig0005653:514-533 | Msa1342450:CDS | 40.0% | |
TGGAACACCATGTTCTTTGT+AGG | + | tig0005653:524-543 | Msa1342450:intergenic | 40.0% | |
CATTGCAACAAACCTTCCTA+AGG | - | tig0005653:609-628 | Msa1342450:CDS | 40.0% | |
TTAGGGGTTGCTTGAAGAAT+TGG | - | tig0005653:697-716 | Msa1342450:intron | 40.0% | |
TAGGGGTTGCTTGAAGAATT+GGG | - | tig0005653:698-717 | Msa1342450:intron | 40.0% | |
!! | GTTGTGTCATTTGATAGACC+AGG | - | tig0005653:728-747 | Msa1342450:intron | 40.0% |
TCATTTGATAGACCAGGGTA+TGG | - | tig0005653:734-753 | Msa1342450:intron | 40.0% | |
!! | GAGTTTGGCTCTTGATATTG+AGG | - | tig0005653:790-809 | Msa1342450:intron | 40.0% |
CTTGCAGATAAGCTGGAATT+GGG | - | tig0005653:815-834 | Msa1342450:CDS | 40.0% | |
ACCTGTGAGGAATGAATTTG+AGG | + | tig0005653:895-914 | Msa1342450:intergenic | 40.0% | |
GGAAAACGATGATCAAGGTT+AGG | + | tig0005653:1607-1626 | Msa1342450:intergenic | 40.0% | |
!!! | GTTGTTTTTGGTTGAGTAGG+TGG | + | tig0005653:1629-1648 | Msa1342450:intergenic | 40.0% |
!! | TTATGACAACAGACTTGCTG+GGG | - | tig0005653:2003-2022 | Msa1342450:intron | 40.0% |
TCCTTACAACATGTCCACAA+AGG | - | tig0005653:2069-2088 | Msa1342450:intron | 40.0% | |
TTGCTCATAATAGGCCTTTG+TGG | + | tig0005653:2086-2105 | Msa1342450:intergenic | 40.0% | |
TTGTGCAGGTTGCTCATAAT+AGG | + | tig0005653:2095-2114 | Msa1342450:intergenic | 40.0% | |
TCTGGTGGTTTACTCAAAAC+TGG | - | tig0005653:2161-2180 | Msa1342450:intron | 40.0% | |
CAGTCACAAGTGAAACAACA+AGG | - | tig0005653:2380-2399 | Msa1342450:intron | 40.0% | |
GTGAGCACGAATCTATATGT+CGG | - | tig0005653:2402-2421 | Msa1342450:intron | 40.0% | |
TGAGCACGAATCTATATGTC+GGG | - | tig0005653:2403-2422 | Msa1342450:intron | 40.0% | |
ATATGTCGGGACACCATAAT+TGG | - | tig0005653:2416-2435 | Msa1342450:intron | 40.0% | |
ACACTTGTTTCCAAATGTCG+AGG | - | tig0005653:2610-2629 | Msa1342450:CDS | 40.0% | |
TGGTGAACCACATGTTCTTG+GGG | + | tig0005653:446-465 | Msa1342450:intergenic | 45.0% | |
CTGGTGAACCACATGTTCTT+GGG | + | tig0005653:447-466 | Msa1342450:intergenic | 45.0% | |
! | CCATCTCTCAGCTTTATCCT+TGG | + | tig0005653:490-509 | Msa1342450:intergenic | 45.0% |
CCAAGGATAAAGCTGAGAGA+TGG | - | tig0005653:487-506 | Msa1342450:CDS | 45.0% | |
GCTGAGAGATGGAAGACATT+TGG | - | tig0005653:498-517 | Msa1342450:CDS | 45.0% | |
GCTTGCAGATAAGCTGGAAT+TGG | - | tig0005653:814-833 | Msa1342450:CDS | 45.0% | |
! | GTCATGGGATTTTCAATGGG+TGG | - | tig0005653:851-870 | Msa1342450:CDS | 45.0% |
GCCTCAAATTCATTCCTCAC+AGG | - | tig0005653:891-910 | Msa1342450:CDS | 45.0% | |
! | GGGGGTGAAATTTTCCATGA+AGG | + | tig0005653:1221-1240 | Msa1342450:intergenic | 45.0% |
AGGTGGGAAAACGATGATCA+AGG | + | tig0005653:1612-1631 | Msa1342450:intergenic | 45.0% | |
TGACTCCAGTGGTAAACTAC+TGG | - | tig0005653:2035-2054 | Msa1342450:intron | 45.0% | |
GCCTTTGTGGACATGTTGTA+AGG | + | tig0005653:2073-2092 | Msa1342450:intergenic | 45.0% | |
GAGTTGCTCATTATGTCCCA+TGG | - | tig0005653:2131-2150 | Msa1342450:intron | 45.0% | |
ATGTCCCATGGCTTACATTC+TGG | - | tig0005653:2143-2162 | Msa1342450:intron | 45.0% | |
ACCACCAGAATGTAAGCCAT+GGG | + | tig0005653:2150-2169 | Msa1342450:intergenic | 45.0% | |
AACCACCAGAATGTAAGCCA+TGG | + | tig0005653:2151-2170 | Msa1342450:intergenic | 45.0% | |
CGGGACACCATAATTGGATT+TGG | - | tig0005653:2422-2441 | Msa1342450:intron | 45.0% | |
TATATCGTTGCAGCGTAGCA+GGG | + | tig0005653:2541-2560 | Msa1342450:intergenic | 45.0% | |
ATATATCGTTGCAGCGTAGC+AGG | + | tig0005653:2542-2561 | Msa1342450:intergenic | 45.0% | |
TACCATGAATTGCAAGGTGC+TGG | - | tig0005653:2587-2606 | Msa1342450:CDS | 45.0% | |
!!! | GTATTTATTTATTTTTAATT+TGG | - | tig0005653:674-693 | Msa1342450:CDS | 5.0% |
!!! | AACATTTTTATTATTTTTTA+GGG | - | tig0005653:1088-1107 | Msa1342450:intron | 5.0% |
!!! | ATTCAAAAAAAAATATTTTA+CGG | + | tig0005653:1162-1181 | Msa1342450:intergenic | 5.0% |
TCTTGGGGGTGGAGGTTTAA+TGG | + | tig0005653:431-450 | Msa1342450:intergenic | 50.0% | |
GGTGAACCACATGTTCTTGG+GGG | + | tig0005653:445-464 | Msa1342450:intergenic | 50.0% | |
CCTGGTGAACCACATGTTCT+TGG | + | tig0005653:448-467 | Msa1342450:intergenic | 50.0% | |
CCAAGAACATGTGGTTCACC+AGG | - | tig0005653:445-464 | Msa1342450:CDS | 50.0% | |
AGAACATGTGGTTCACCAGG+TGG | - | tig0005653:448-467 | Msa1342450:CDS | 50.0% | |
!! | ATCCTTGGTGCTGTTATGGG+TGG | + | tig0005653:475-494 | Msa1342450:intergenic | 50.0% |
GCATCACTTTCTCCATACCC+TGG | + | tig0005653:749-768 | Msa1342450:intergenic | 50.0% | |
TGAGGAGCTTGCAGATAAGC+TGG | - | tig0005653:808-827 | Msa1342450:CDS | 50.0% | |
AATGGGTGGCCAAGCTGTTT+GGG | - | tig0005653:865-884 | Msa1342450:CDS | 50.0% | |
! | GGCAACATTGATGACTCCAG+TGG | - | tig0005653:2024-2043 | Msa1342450:intron | 50.0% |
CTCCAGTGGTAAACTACTGG+TGG | - | tig0005653:2038-2057 | Msa1342450:intron | 50.0% | |
! | TGGTAAACTACTGGTGGCGT+GGG | - | tig0005653:2044-2063 | Msa1342450:intron | 50.0% |
AGCAACCTGCACAAGACCAA+TGG | - | tig0005653:2101-2120 | Msa1342450:intron | 50.0% | |
GCAACCTGCACAAGACCAAT+GGG | - | tig0005653:2102-2121 | Msa1342450:intron | 50.0% | |
TCCCATGGCTTACATTCTGG+TGG | - | tig0005653:2146-2165 | Msa1342450:intron | 50.0% | |
GTCCAGCACCTTGCAATTCA+TGG | + | tig0005653:2592-2611 | Msa1342450:intergenic | 50.0% | |
GCACTCACTTCCTCGACATT+TGG | + | tig0005653:2623-2642 | Msa1342450:intergenic | 50.0% | |
GAACCACATGTTCTTGGGGG+TGG | + | tig0005653:442-461 | Msa1342450:intergenic | 55.0% | |
GTCCACCCATAACAGCACCA+AGG | - | tig0005653:470-489 | Msa1342450:CDS | 55.0% | |
CAATGGGTGGCCAAGCTGTT+TGG | - | tig0005653:864-883 | Msa1342450:CDS | 55.0% | |
ATGGGTGGCCAAGCTGTTTG+GGG | - | tig0005653:866-885 | Msa1342450:CDS | 55.0% | |
TGAGGCAACCCCAAACAGCT+TGG | + | tig0005653:877-896 | Msa1342450:intergenic | 55.0% | |
CGCCACCAGTAGTTTACCAC+TGG | + | tig0005653:2043-2062 | Msa1342450:intergenic | 55.0% | |
! | GTGGTAAACTACTGGTGGCG+TGG | - | tig0005653:2043-2062 | Msa1342450:intron | 55.0% |
!! | AGTGCCCATTGGTCTTGTGC+AGG | + | tig0005653:2109-2128 | Msa1342450:intergenic | 55.0% |
! | GAGCAACTCGAAGTGCCCAT+TGG | + | tig0005653:2120-2139 | Msa1342450:intergenic | 55.0% |
CCACATGTTCTTGGGGGTGG+AGG | + | tig0005653:439-458 | Msa1342450:intergenic | 60.0% | |
CCTCCACCCCCAAGAACATG+TGG | - | tig0005653:436-455 | Msa1342450:CDS | 60.0% | |
GCTGTTATGGGTGGACCACC+TGG | + | tig0005653:466-485 | Msa1342450:intergenic | 60.0% | |
CTCGGGGAGACAGAACAGCA+GGG | + | tig0005653:2216-2235 | Msa1342450:intergenic | 60.0% | |
TCTCGGGGAGACAGAACAGC+AGG | + | tig0005653:2217-2236 | Msa1342450:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0005653 | gene | 222 | 2859 | 222 | ID=Msa1342450;Name=Msa1342450 |
tig0005653 | mRNA | 222 | 2859 | 222 | ID=Msa1342450-mRNA-1;Parent=Msa1342450;Name=Msa1342450-mRNA-1;_AED=0.02;_eAED=0.02;_QI=148|1|1|1|1|1|4|180|344 |
tig0005653 | exon | 222 | 698 | 222 | ID=Msa1342450-mRNA-1:exon:3602;Parent=Msa1342450-mRNA-1 |
tig0005653 | exon | 802 | 1066 | 802 | ID=Msa1342450-mRNA-1:exon:3601;Parent=Msa1342450-mRNA-1 |
tig0005653 | exon | 2169 | 2380 | 2169 | ID=Msa1342450-mRNA-1:exon:3600;Parent=Msa1342450-mRNA-1 |
tig0005653 | exon | 2451 | 2859 | 2451 | ID=Msa1342450-mRNA-1:exon:3599;Parent=Msa1342450-mRNA-1 |
tig0005653 | five_prime_UTR | 2712 | 2859 | 2712 | ID=Msa1342450-mRNA-1:five_prime_utr;Parent=Msa1342450-mRNA-1 |
tig0005653 | CDS | 2451 | 2711 | 2451 | ID=Msa1342450-mRNA-1:cds;Parent=Msa1342450-mRNA-1 |
tig0005653 | CDS | 2169 | 2380 | 2169 | ID=Msa1342450-mRNA-1:cds;Parent=Msa1342450-mRNA-1 |
tig0005653 | CDS | 802 | 1066 | 802 | ID=Msa1342450-mRNA-1:cds;Parent=Msa1342450-mRNA-1 |
tig0005653 | CDS | 402 | 698 | 402 | ID=Msa1342450-mRNA-1:cds;Parent=Msa1342450-mRNA-1 |
tig0005653 | three_prime_UTR | 222 | 401 | 222 | ID=Msa1342450-mRNA-1:three_prime_utr;Parent=Msa1342450-mRNA-1 |
Gene Sequence |
Protein sequence |