AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1342450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342450 MtrunA17_Chr1g0171181 88.081 344 12 1 1 344 1 315 0.0 613
Msa1342450 MtrunA17_Chr1g0178721 61.877 341 129 1 1 340 33 373 4.39e-163 460
Msa1342450 MtrunA17_Chr1g0178741 61.877 341 129 1 1 340 58 398 3.17e-162 459
Msa1342450 MtrunA17_Chr2g0321341 49.855 345 163 4 1 342 1 338 4.51e-125 362
Msa1342450 MtrunA17_Chr2g0321351 46.104 308 156 4 37 341 45 345 6.96e-98 294
Msa1342450 MtrunA17_Chr4g0026421 41.477 352 187 6 1 341 1 344 9.61e-97 291
Msa1342450 MtrunA17_Chr3g0136021 44.444 306 159 5 41 342 130 428 1.11e-89 275
Msa1342450 MtrunA17_Chr4g0029971 29.283 321 186 8 36 324 119 430 3.38e-37 139
Msa1342450 MtrunA17_Chr7g0263721 25.620 363 238 6 5 338 121 480 5.09e-36 136
Msa1342450 MtrunA17_Chr2g0321371 52.941 51 24 0 274 324 1 51 1.92e-14 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342450 AT1G74300.1 65.046 329 113 2 14 340 16 344 7.18e-156 441
Msa1342450 AT2G36290.1 59.475 343 138 1 1 342 17 359 7.55e-154 436
Msa1342450 AT2G36290.2 59.475 343 138 1 1 342 3 345 1.18e-153 436
Msa1342450 AT1G74280.1 60.125 321 127 1 21 340 41 361 1.03e-142 409
Msa1342450 AT1G74290.1 59.509 326 127 4 15 336 34 358 3.91e-139 399
Msa1342450 AT3G48410.1 52.059 340 163 0 2 341 33 372 6.17e-138 397
Msa1342450 AT3G48410.2 52.059 340 163 0 2 341 75 414 2.67e-137 397
Msa1342450 AT3G54240.1 54.354 333 152 0 8 340 12 344 2.96e-137 394
Msa1342450 AT5G22460.2 51.603 343 162 2 1 342 1 340 2.06e-133 384
Msa1342450 AT5G22460.3 51.603 343 162 2 1 342 1 340 2.06e-133 384
Msa1342450 AT5G22460.1 51.603 343 162 2 1 342 1 340 2.06e-133 384
Msa1342450 AT1G74300.2 63.265 245 89 1 97 340 1 245 1.79e-111 325
Msa1342450 AT3G03240.1 45.033 302 158 4 39 338 35 330 1.13e-94 285
Msa1342450 AT3G44510.2 44.118 306 161 4 41 341 8 308 5.95e-88 268
Msa1342450 AT3G03230.1 43.137 306 165 4 39 342 35 333 9.49e-88 267
Msa1342450 AT1G08310.2 42.038 314 169 5 33 341 2 307 5.74e-85 259
Msa1342450 AT1G08310.1 42.357 314 165 6 33 341 2 304 9.15e-84 256
Msa1342450 AT3G44510.3 48.980 196 95 2 41 236 8 198 2.38e-61 196
Msa1342450 AT1G08310.3 46.890 209 105 3 33 240 2 205 1.12e-60 195
Msa1342450 AT3G44510.1 37.745 204 120 3 143 341 1 202 7.37e-45 153
Msa1342450 AT3G44510.5 37.745 204 120 3 143 341 1 202 7.37e-45 153
Msa1342450 AT3G44510.4 37.745 204 120 3 143 341 1 202 7.37e-45 153
Msa1342450 AT5G02970.1 25.278 360 214 7 5 324 126 470 1.80e-30 121
Msa1342450 AT3G09690.1 26.154 325 193 9 36 324 160 473 2.28e-28 115
Msa1342450 AT3G09690.2 26.154 325 193 9 36 324 160 473 2.28e-28 115

Find 99 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACTGTTTGTTTCAAATTT+TGG 0.115473 tig0005653:+223 Msa1342450:intergenic
TGAACTTTGATTGTATTATC+TGG 0.206245 tig0005653:+574 Msa1342450:intergenic
AATGGGTGGCCAAGCTGTTT+GGG 0.208672 tig0005653:-2194 Msa1342450:CDS
CTTTATCCTTGGTGCTGTTA+TGG 0.220069 tig0005653:+2583 Msa1342450:intergenic
CAATGGGTGGCCAAGCTGTT+TGG 0.228990 tig0005653:-2195 Msa1342450:CDS
GCTCCCTTAAAAGTGAAAAT+TGG 0.246316 tig0005653:-271 Msa1342450:three_prime_UTR
TTTATCCTTGGTGCTGTTAT+GGG 0.264845 tig0005653:+2584 Msa1342450:intergenic
CTGGTGAACCACATGTTCTT+GGG 0.267606 tig0005653:+2615 Msa1342450:intergenic
GTTAATTTGCTTTAGATTCT+CGG 0.270263 tig0005653:-308 Msa1342450:three_prime_UTR
CCATAATTGGATTTGGAACT+TGG 0.273799 tig0005653:-630 Msa1342450:CDS
ATATGTCGGGACACCATAAT+TGG 0.290722 tig0005653:-643 Msa1342450:CDS
CCAAGTTCCAAATCCAATTA+TGG 0.290795 tig0005653:+630 Msa1342450:intergenic
GCACTCACTTCCTCGACATT+TGG 0.310843 tig0005653:+439 Msa1342450:intergenic
ATGTCCCATGGCTTACATTC+TGG 0.316887 tig0005653:-916 Msa1342450:CDS
CGGGACACCATAATTGGATT+TGG 0.319529 tig0005653:-637 Msa1342450:CDS
CCTGGTGAACCACATGTTCT+TGG 0.342532 tig0005653:+2614 Msa1342450:intergenic
CCTACATCAAGTGTAGTAAA+AGG 0.347381 tig0005653:-872 Msa1342450:CDS
TGGAACACCATGTTCTTTGT+AGG 0.351078 tig0005653:+2538 Msa1342450:intergenic
TTAGGGGTTGCTTGAAGAAT+TGG 0.352823 tig0005653:-2362 Msa1342450:intron
GTCCAGCACCTTGCAATTCA+TGG 0.359218 tig0005653:+470 Msa1342450:intergenic
GCTTGCAGATAAGCTGGAAT+TGG 0.360953 tig0005653:-2245 Msa1342450:CDS
TCTGGTGGTTTACTCAAAAC+TGG 0.363902 tig0005653:-898 Msa1342450:CDS
ATACAATCAAAGTTCATCTA+TGG 0.365095 tig0005653:-567 Msa1342450:CDS
AATCCTCAAAACTCAGTTGA+TGG 0.379935 tig0005653:-413 Msa1342450:CDS
CCATCTCTCAGCTTTATCCT+TGG 0.381172 tig0005653:+2572 Msa1342450:intergenic
ATTGTATTCATACATGGGTT+TGG 0.388797 tig0005653:-2494 Msa1342450:CDS
GTCAATATCACAATTACGTT+GGG 0.396519 tig0005653:-2788 Msa1342450:five_prime_UTR
ATATATCGTTGCAGCGTAGC+AGG 0.408666 tig0005653:+520 Msa1342450:intergenic
TAGGGGTTGCTTGAAGAATT+GGG 0.419223 tig0005653:-2361 Msa1342450:CDS
TTCTTGCTAGCTAATTGTCT+TGG 0.429772 tig0005653:+2518 Msa1342450:intergenic
GCCTTTGTGGACATGTTGTA+AGG 0.431803 tig0005653:+989 Msa1342450:intergenic
TGAAAACAATTGATAAATCT+CGG 0.433109 tig0005653:+828 Msa1342450:intergenic
TTGTGCAGGTTGCTCATAAT+AGG 0.436529 tig0005653:+967 Msa1342450:intergenic
GAGTTTGGCTCTTGATATTG+AGG 0.442872 tig0005653:-2269 Msa1342450:CDS
GCTGAGAGATGGAAGACATT+TGG 0.444386 tig0005653:-2561 Msa1342450:CDS
GAAAACAATTGATAAATCTC+GGG 0.447754 tig0005653:+829 Msa1342450:intergenic
GAACTTTGATTGTATTATCT+GGG 0.448382 tig0005653:+575 Msa1342450:intergenic
TACCATGAATTGCAAGGTGC+TGG 0.459267 tig0005653:-472 Msa1342450:CDS
TTGATTGTATTATCTGGGAA+AGG 0.469632 tig0005653:+580 Msa1342450:intergenic
TTGCTCATAATAGGCCTTTG+TGG 0.470685 tig0005653:+976 Msa1342450:intergenic
GTCTATCAACAAAGAACATC+AGG 0.473018 tig0005653:-801 Msa1342450:intron
CACAATTACGTTGGGAAAGA+CGG 0.480454 tig0005653:-2780 Msa1342450:five_prime_UTR
AAGAAGATTGTATTCATACA+TGG 0.487358 tig0005653:-2500 Msa1342450:CDS
TGAGGAGCTTGCAGATAAGC+TGG 0.489202 tig0005653:-2251 Msa1342450:CDS
ATCCTTGGTGCTGTTATGGG+TGG 0.489509 tig0005653:+2587 Msa1342450:intergenic
TGATTGTATTATCTGGGAAA+GGG 0.492417 tig0005653:+581 Msa1342450:intergenic
CTTGCAGATAAGCTGGAATT+GGG 0.497644 tig0005653:-2244 Msa1342450:CDS
GCTGTTATGGGTGGACCACC+TGG 0.508255 tig0005653:+2596 Msa1342450:intergenic
CATAATTGGATTTGGAACTT+GGG 0.510583 tig0005653:-629 Msa1342450:CDS
TCCCATGGCTTACATTCTGG+TGG 0.512659 tig0005653:-913 Msa1342450:CDS
CGCCACCAGTAGTTTACCAC+TGG 0.519322 tig0005653:+1019 Msa1342450:intergenic
TGTCAATATCACAATTACGT+TGG 0.521508 tig0005653:-2789 Msa1342450:five_prime_UTR
TCTCGGGGAGACAGAACAGC+AGG 0.521518 tig0005653:+845 Msa1342450:intergenic
GCAACCTGCACAAGACCAAT+GGG 0.529291 tig0005653:-957 Msa1342450:CDS
ATGGGTGGCCAAGCTGTTTG+GGG 0.530077 tig0005653:-2193 Msa1342450:CDS
TTTATGACAACAGACTTGCT+GGG 0.539829 tig0005653:-1057 Msa1342450:intron
GCCTCAAATTCATTCCTCAC+AGG 0.540453 tig0005653:-2168 Msa1342450:intron
TGAGCACGAATCTATATGTC+GGG 0.544660 tig0005653:-656 Msa1342450:CDS
TGAGGCAACCCCAAACAGCT+TGG 0.544790 tig0005653:+2185 Msa1342450:intergenic
CCAAGAACATGTGGTTCACC+AGG 0.544937 tig0005653:-2614 Msa1342450:CDS
GAGTTGCTCATTATGTCCCA+TGG 0.548595 tig0005653:-928 Msa1342450:CDS
TCATTTGATAGACCAGGGTA+TGG 0.549328 tig0005653:-2325 Msa1342450:CDS
AGCAACCTGCACAAGACCAA+TGG 0.551215 tig0005653:-958 Msa1342450:CDS
AGAAGATTGTATTCATACAT+GGG 0.557044 tig0005653:-2499 Msa1342450:CDS
AGTGCCCATTGGTCTTGTGC+AGG 0.557180 tig0005653:+953 Msa1342450:intergenic
GTGGTAAACTACTGGTGGCG+TGG 0.560154 tig0005653:-1016 Msa1342450:CDS
ACCTGTGAGGAATGAATTTG+AGG 0.560787 tig0005653:+2167 Msa1342450:intergenic
TGGTGAACCACATGTTCTTG+GGG 0.561443 tig0005653:+2616 Msa1342450:intergenic
CATTGCAACAAACCTTCCTA+AGG 0.566740 tig0005653:-2450 Msa1342450:intron
AATTCATGGTATTGAATCCA+CGG 0.569030 tig0005653:+484 Msa1342450:intergenic
AATTAATTATTACCTTAGGA+AGG 0.569133 tig0005653:+2438 Msa1342450:intergenic
ATATATATTCACTTGAGTGT+TGG 0.569473 tig0005653:-2754 Msa1342450:five_prime_UTR
GAGCAACTCGAAGTGCCCAT+TGG 0.571357 tig0005653:+942 Msa1342450:intergenic
TGGTAAACTACTGGTGGCGT+GGG 0.575501 tig0005653:-1015 Msa1342450:CDS
ATCAAAGTTCATCTATGGCA+AGG 0.584167 tig0005653:-562 Msa1342450:CDS
TGACTCCAGTGGTAAACTAC+TGG 0.587202 tig0005653:-1024 Msa1342450:CDS
GTGAGCACGAATCTATATGT+CGG 0.590263 tig0005653:-657 Msa1342450:CDS
GTTGTGTCATTTGATAGACC+AGG 0.594934 tig0005653:-2331 Msa1342450:CDS
AACCACCAGAATGTAAGCCA+TGG 0.595126 tig0005653:+911 Msa1342450:intergenic
CCAAGGATAAAGCTGAGAGA+TGG 0.598249 tig0005653:-2572 Msa1342450:CDS
AAAGGGTTATCAAGATCAAG+TGG 0.600862 tig0005653:+598 Msa1342450:intergenic
TATATCGTTGCAGCGTAGCA+GGG 0.601081 tig0005653:+521 Msa1342450:intergenic
TTGTGTCATTTGATAGACCA+GGG 0.602205 tig0005653:-2330 Msa1342450:CDS
CATTTGGCCTACAAAGAACA+TGG 0.621530 tig0005653:-2545 Msa1342450:CDS
CTCCAGTGGTAAACTACTGG+TGG 0.624685 tig0005653:-1021 Msa1342450:CDS
ACCACCAGAATGTAAGCCAT+GGG 0.627278 tig0005653:+912 Msa1342450:intergenic
TTATGACAACAGACTTGCTG+GGG 0.632491 tig0005653:-1056 Msa1342450:intron
AAAACAATTGATAAATCTCG+GGG 0.637290 tig0005653:+830 Msa1342450:intergenic
ACACTTGTTTCCAAATGTCG+AGG 0.640167 tig0005653:-449 Msa1342450:CDS
GCATCACTTTCTCCATACCC+TGG 0.644710 tig0005653:+2313 Msa1342450:intergenic
ATTCAATACCATGAATTGCA+AGG 0.645032 tig0005653:-478 Msa1342450:CDS
CAGTCACAAGTGAAACAACA+AGG 0.646584 tig0005653:-679 Msa1342450:CDS
GGTGAACCACATGTTCTTGG+GGG 0.653985 tig0005653:+2617 Msa1342450:intergenic
TCCTTACAACATGTCCACAA+AGG 0.672781 tig0005653:-990 Msa1342450:CDS
AGAACATGTGGTTCACCAGG+TGG 0.673501 tig0005653:-2611 Msa1342450:CDS
AATTAACAGTGTTACCTGTG+AGG 0.684658 tig0005653:+2154 Msa1342450:intergenic
GGCAACATTGATGACTCCAG+TGG 0.685628 tig0005653:-1035 Msa1342450:CDS
CTCGGGGAGACAGAACAGCA+GGG 0.713200 tig0005653:+846 Msa1342450:intergenic
GTCCACCCATAACAGCACCA+AGG 0.749684 tig0005653:-2589 Msa1342450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTAAATAAAAATA+CGG + tig0005653:1481-1500 Msa1342450:intergenic 0.0%
!! TTAAAAAAATAAATTAATAA+TGG - tig0005653:1978-1997 Msa1342450:intron 0.0%
!!! TATTTATTTTTAATTTGGTT+AGG - tig0005653:679-698 Msa1342450:CDS 10.0%
!!! ATTTATTTTTAATTTGGTTA+GGG - tig0005653:680-699 Msa1342450:intron 10.0%
!! AAAATAATATTAAAAATGTG+TGG + tig0005653:952-971 Msa1342450:intergenic 10.0%
!!! CAACATTTTTATTATTTTTT+AGG - tig0005653:1087-1106 Msa1342450:intron 10.0%
!!! TTCAAAAAAAAATATTTTAC+GGG + tig0005653:1161-1180 Msa1342450:intergenic 10.0%
!!! TTTGTATTTTTTTTTTGAAA+GGG - tig0005653:1871-1890 Msa1342450:intron 10.0%
!!! GTTTTTAATTAAAAATTGAA+AGG - tig0005653:2725-2744 Msa1342450:five_prime_UTR 10.0%
!!! AATTTTCAAAATCATACTTA+AGG + tig0005653:649-668 Msa1342450:intergenic 15.0%
!!! TTTATTTTTAATTTGGTTAG+GGG - tig0005653:681-700 Msa1342450:intron 15.0%
!!! TCAAAAAAAAATATTTTACG+GGG + tig0005653:1160-1179 Msa1342450:intergenic 15.0%
!!! AATTTGAAGATTTTTCATTT+TGG + tig0005653:1377-1396 Msa1342450:intergenic 15.0%
!! ATATATTTCATTGAAAAAGT+TGG - tig0005653:1549-1568 Msa1342450:intron 15.0%
!! ATAAAACTCAAATTGAATAA+TGG - tig0005653:1689-1708 Msa1342450:intron 15.0%
!!! AATTGATTTAAATTCAATAC+TGG + tig0005653:1782-1801 Msa1342450:intergenic 15.0%
!!! GTTTGTATTTTTTTTTTGAA+AGG - tig0005653:1870-1889 Msa1342450:intron 15.0%
!!! AATTTTGTTGATTGGAATTT+TGG - tig0005653:390-409 Msa1342450:exon 20.0%
!!! ATTTTGTTGATTGGAATTTT+GGG - tig0005653:391-410 Msa1342450:exon 20.0%
!! AATTAATTATTACCTTAGGA+AGG + tig0005653:624-643 Msa1342450:intergenic 20.0%
!!! AAAATTTGCTCAAATTAACA+GGG + tig0005653:1302-1321 Msa1342450:intergenic 20.0%
!! TGAAAAATCTTCAAATTACA+AGG - tig0005653:1380-1399 Msa1342450:intron 20.0%
!!! TCCAAAAAAATATTTTACAG+AGG - tig0005653:1409-1428 Msa1342450:intron 20.0%
!!! CCAAAAAAATATTTTACAGA+GGG - tig0005653:1410-1429 Msa1342450:intron 20.0%
!!! ATGTAAATCATAGTTGTTTT+TGG + tig0005653:1641-1660 Msa1342450:intergenic 20.0%
!! TGAAAACAATTGATAAATCT+CGG + tig0005653:2234-2253 Msa1342450:intergenic 20.0%
! ATATATATTCACTTGAGTGT+TGG - tig0005653:305-324 Msa1342450:three_prime_UTR 25.0%
!! ATTGCATCAATTTTGTTGAT+TGG - tig0005653:382-401 Msa1342450:three_prime_UTR 25.0%
! AAGAAGATTGTATTCATACA+TGG - tig0005653:559-578 Msa1342450:CDS 25.0%
! AGAAGATTGTATTCATACAT+GGG - tig0005653:560-579 Msa1342450:CDS 25.0%
! GGTGAATTAATTATTACCTT+AGG + tig0005653:628-647 Msa1342450:intergenic 25.0%
!! AAACTCTTTACACTTCTTTT+TGG + tig0005653:776-795 Msa1342450:intergenic 25.0%
!! AAAAAGAAGTGTAAAGAGTT+TGG - tig0005653:775-794 Msa1342450:intron 25.0%
!! TATTTTACGGGGAAAAAAAA+CGG + tig0005653:1149-1168 Msa1342450:intergenic 25.0%
! CAAAAAATCTTCGAATTACA+AGG + tig0005653:1190-1209 Msa1342450:intergenic 25.0%
!!! CTTGTAATTCGAAGATTTTT+TGG - tig0005653:1188-1207 Msa1342450:intron 25.0%
!!! ATTCGAAGATTTTTTGGTTT+TGG - tig0005653:1194-1213 Msa1342450:intron 25.0%
!! TAAATTTGCTCAAATTACAG+GGG + tig0005653:1240-1259 Msa1342450:intergenic 25.0%
!! CTAAATTTGCTCAAATTACA+GGG + tig0005653:1241-1260 Msa1342450:intergenic 25.0%
!! AAATTTGCTCAAATTACAAG+GGG + tig0005653:1270-1289 Msa1342450:intergenic 25.0%
!! GAAATTTGCTCAAATTACAA+GGG + tig0005653:1271-1290 Msa1342450:intergenic 25.0%
! CTTGTAATTTGAGCAAATTT+CGG - tig0005653:1270-1289 Msa1342450:intron 25.0%
!! AAATTTGCTCAAATTAACAG+GGG + tig0005653:1301-1320 Msa1342450:intergenic 25.0%
!! CAAAATTTGCTCAAATTAAC+AGG + tig0005653:1303-1322 Msa1342450:intergenic 25.0%
!!! CTGTTAATTTGAGCAAATTT+TGG - tig0005653:1301-1320 Msa1342450:intron 25.0%
! ACTGTATAAAATCGAAGATA+TGG + tig0005653:1338-1357 Msa1342450:intergenic 25.0%
! TATACAGTCAAAATTCATGA+AGG - tig0005653:1350-1369 Msa1342450:intron 25.0%
!!! CCCTCTGTAAAATATTTTTT+TGG + tig0005653:1413-1432 Msa1342450:intergenic 25.0%
!! AACAATAGATCTCTGAATTT+TGG + tig0005653:1581-1600 Msa1342450:intergenic 25.0%
!! AGATGACTAAAATCTTGTTT+CGG - tig0005653:1737-1756 Msa1342450:intron 25.0%
! TTAAAGTGTGTAATGAATGT+AGG - tig0005653:1801-1820 Msa1342450:intron 25.0%
!!! GAATACAATTTTTTTTCCCA+GGG + tig0005653:1948-1967 Msa1342450:intergenic 25.0%
!!! TGAATACAATTTTTTTTCCC+AGG + tig0005653:1949-1968 Msa1342450:intergenic 25.0%
! AAAACAATTGATAAATCTCG+GGG + tig0005653:2232-2251 Msa1342450:intergenic 25.0%
! GAAAACAATTGATAAATCTC+GGG + tig0005653:2233-2252 Msa1342450:intergenic 25.0%
! GAACTTTGATTGTATTATCT+GGG + tig0005653:2487-2506 Msa1342450:intergenic 25.0%
! TGAACTTTGATTGTATTATC+TGG + tig0005653:2488-2507 Msa1342450:intergenic 25.0%
! ATACAATCAAAGTTCATCTA+TGG - tig0005653:2492-2511 Msa1342450:CDS 25.0%
!!! GTTAATTTGCTTTAGATTCT+CGG - tig0005653:2751-2770 Msa1342450:five_prime_UTR 25.0%
!!! CTTCCAATTTTCACTTTTAA+GGG + tig0005653:2794-2813 Msa1342450:intergenic 25.0%
!!! ACTTCCAATTTTCACTTTTA+AGG + tig0005653:2795-2814 Msa1342450:intergenic 25.0%
TGTCAATATCACAATTACGT+TGG - tig0005653:270-289 Msa1342450:three_prime_UTR 30.0%
GTCAATATCACAATTACGTT+GGG - tig0005653:271-290 Msa1342450:three_prime_UTR 30.0%
ATTGTATTCATACATGGGTT+TGG - tig0005653:565-584 Msa1342450:CDS 30.0%
!! GGATCTAAGTTTTATGTCAT+GGG - tig0005653:836-855 Msa1342450:CDS 30.0%
! TTATGTCATGGGATTTTCAA+TGG - tig0005653:847-866 Msa1342450:CDS 30.0%
! TATGTCATGGGATTTTCAAT+GGG - tig0005653:848-867 Msa1342450:CDS 30.0%
GTGTTTAACCTCTGTAATAT+AGG - tig0005653:1117-1136 Msa1342450:intron 30.0%
! AAATTTGCTCAAATTACAGG+GGG + tig0005653:1239-1258 Msa1342450:intergenic 30.0%
! CCTAAATTTGCTCAAATTAC+AGG + tig0005653:1242-1261 Msa1342450:intergenic 30.0%
CCTGTAATTTGAGCAAATTT+AGG - tig0005653:1239-1258 Msa1342450:intron 30.0%
! CGAAATTTGCTCAAATTACA+AGG + tig0005653:1272-1291 Msa1342450:intergenic 30.0%
! AATTTGCTCAAATTAACAGG+GGG + tig0005653:1300-1319 Msa1342450:intergenic 30.0%
ATAAAATCGAAGATATGGCA+AGG + tig0005653:1333-1352 Msa1342450:intergenic 30.0%
TCGAAAATGACCTATATTAC+AGG - tig0005653:1438-1457 Msa1342450:intron 30.0%
CGAAAATGACCTATATTACA+GGG - tig0005653:1439-1458 Msa1342450:intron 30.0%
GAAAATGACCTATATTACAG+GGG - tig0005653:1440-1459 Msa1342450:intron 30.0%
AAAATGACCTATATTACAGG+GGG - tig0005653:1441-1460 Msa1342450:intron 30.0%
!!! ATAGTTGTTTTTGGTTGAGT+AGG + tig0005653:1632-1651 Msa1342450:intergenic 30.0%
TCGGTTCTTCCTAAAAAAAA+AGG - tig0005653:1756-1775 Msa1342450:intron 30.0%
!!! CAATACTGGCCTTTTTTTTT+AGG + tig0005653:1768-1787 Msa1342450:intergenic 30.0%
AAAATGCAAAAAGTAAACCC+TGG - tig0005653:1928-1947 Msa1342450:intron 30.0%
AAATGCAAAAAGTAAACCCT+GGG - tig0005653:1929-1948 Msa1342450:intron 30.0%
TAGTCGTTAGATCAGTATAA+AGG + tig0005653:2348-2367 Msa1342450:intergenic 30.0%
! CATAATTGGATTTGGAACTT+GGG - tig0005653:2430-2449 Msa1342450:intron 30.0%
TGATTGTATTATCTGGGAAA+GGG + tig0005653:2481-2500 Msa1342450:intergenic 30.0%
TTGATTGTATTATCTGGGAA+AGG + tig0005653:2482-2501 Msa1342450:intergenic 30.0%
ATATTGTTCAAAAACTTCCG+TGG - tig0005653:2558-2577 Msa1342450:CDS 30.0%
! AATTCATGGTATTGAATCCA+CGG + tig0005653:2578-2597 Msa1342450:intergenic 30.0%
ATTCAATACCATGAATTGCA+AGG - tig0005653:2581-2600 Msa1342450:CDS 30.0%
! GGACTGTTTGTTTCAAATTT+TGG + tig0005653:2839-2858 Msa1342450:intergenic 30.0%
!! GGCACTAACATAATTTTGAC+TGG - tig0005653:326-345 Msa1342450:three_prime_UTR 35.0%
!! TTTATCCTTGGTGCTGTTAT+GGG + tig0005653:478-497 Msa1342450:intergenic 35.0%
TTCTTGCTAGCTAATTGTCT+TGG + tig0005653:544-563 Msa1342450:intergenic 35.0%
!! TTGTGTCATTTGATAGACCA+GGG - tig0005653:729-748 Msa1342450:intron 35.0%
!! GGGATCTAAGTTTTATGTCA+TGG - tig0005653:835-854 Msa1342450:CDS 35.0%
AATTAACAGTGTTACCTGTG+AGG + tig0005653:908-927 Msa1342450:intergenic 35.0%
AAAAATGTGTGGTCTACGAT+AGG + tig0005653:941-960 Msa1342450:intergenic 35.0%
GGAAATGACCTATATTACAG+AGG + tig0005653:1128-1147 Msa1342450:intergenic 35.0%
!!! TTTTTGGTTTTGGACCTTCA+TGG - tig0005653:1204-1223 Msa1342450:intron 35.0%
! TGTTTTACCCCCTGTAATAT+AGG + tig0005653:1451-1470 Msa1342450:intergenic 35.0%
!!! TTGTTTTTGGTTGAGTAGGT+GGG + tig0005653:1628-1647 Msa1342450:intergenic 35.0%
! TTTTATGACAACAGACTTGC+TGG - tig0005653:2001-2020 Msa1342450:intron 35.0%
! TTTATGACAACAGACTTGCT+GGG - tig0005653:2002-2021 Msa1342450:intron 35.0%
! CCTTTTACTACACTTGATGT+AGG + tig0005653:2190-2209 Msa1342450:intergenic 35.0%
CCTACATCAAGTGTAGTAAA+AGG - tig0005653:2187-2206 Msa1342450:CDS 35.0%
GTCTATCAACAAAGAACATC+AGG - tig0005653:2258-2277 Msa1342450:CDS 35.0%
CCAAGTTCCAAATCCAATTA+TGG + tig0005653:2432-2451 Msa1342450:intergenic 35.0%
! CCATAATTGGATTTGGAACT+TGG - tig0005653:2429-2448 Msa1342450:intron 35.0%
AAAGGGTTATCAAGATCAAG+TGG + tig0005653:2464-2483 Msa1342450:intergenic 35.0%
ATCAAAGTTCATCTATGGCA+AGG - tig0005653:2497-2516 Msa1342450:CDS 35.0%
AATCCTCAAAACTCAGTTGA+TGG - tig0005653:2646-2665 Msa1342450:CDS 35.0%
! TATCCATCAACTGAGTTTTG+AGG + tig0005653:2652-2671 Msa1342450:intergenic 35.0%
GCTCCCTTAAAAGTGAAAAT+TGG - tig0005653:2788-2807 Msa1342450:five_prime_UTR 35.0%
CACAATTACGTTGGGAAAGA+CGG - tig0005653:279-298 Msa1342450:three_prime_UTR 40.0%
!! CTTTATCCTTGGTGCTGTTA+TGG + tig0005653:479-498 Msa1342450:intergenic 40.0%
CATTTGGCCTACAAAGAACA+TGG - tig0005653:514-533 Msa1342450:CDS 40.0%
TGGAACACCATGTTCTTTGT+AGG + tig0005653:524-543 Msa1342450:intergenic 40.0%
CATTGCAACAAACCTTCCTA+AGG - tig0005653:609-628 Msa1342450:CDS 40.0%
TTAGGGGTTGCTTGAAGAAT+TGG - tig0005653:697-716 Msa1342450:intron 40.0%
TAGGGGTTGCTTGAAGAATT+GGG - tig0005653:698-717 Msa1342450:intron 40.0%
!! GTTGTGTCATTTGATAGACC+AGG - tig0005653:728-747 Msa1342450:intron 40.0%
TCATTTGATAGACCAGGGTA+TGG - tig0005653:734-753 Msa1342450:intron 40.0%
!! GAGTTTGGCTCTTGATATTG+AGG - tig0005653:790-809 Msa1342450:intron 40.0%
CTTGCAGATAAGCTGGAATT+GGG - tig0005653:815-834 Msa1342450:CDS 40.0%
ACCTGTGAGGAATGAATTTG+AGG + tig0005653:895-914 Msa1342450:intergenic 40.0%
GGAAAACGATGATCAAGGTT+AGG + tig0005653:1607-1626 Msa1342450:intergenic 40.0%
!!! GTTGTTTTTGGTTGAGTAGG+TGG + tig0005653:1629-1648 Msa1342450:intergenic 40.0%
!! TTATGACAACAGACTTGCTG+GGG - tig0005653:2003-2022 Msa1342450:intron 40.0%
TCCTTACAACATGTCCACAA+AGG - tig0005653:2069-2088 Msa1342450:intron 40.0%
TTGCTCATAATAGGCCTTTG+TGG + tig0005653:2086-2105 Msa1342450:intergenic 40.0%
TTGTGCAGGTTGCTCATAAT+AGG + tig0005653:2095-2114 Msa1342450:intergenic 40.0%
TCTGGTGGTTTACTCAAAAC+TGG - tig0005653:2161-2180 Msa1342450:intron 40.0%
CAGTCACAAGTGAAACAACA+AGG - tig0005653:2380-2399 Msa1342450:intron 40.0%
GTGAGCACGAATCTATATGT+CGG - tig0005653:2402-2421 Msa1342450:intron 40.0%
TGAGCACGAATCTATATGTC+GGG - tig0005653:2403-2422 Msa1342450:intron 40.0%
ATATGTCGGGACACCATAAT+TGG - tig0005653:2416-2435 Msa1342450:intron 40.0%
ACACTTGTTTCCAAATGTCG+AGG - tig0005653:2610-2629 Msa1342450:CDS 40.0%
TGGTGAACCACATGTTCTTG+GGG + tig0005653:446-465 Msa1342450:intergenic 45.0%
CTGGTGAACCACATGTTCTT+GGG + tig0005653:447-466 Msa1342450:intergenic 45.0%
! CCATCTCTCAGCTTTATCCT+TGG + tig0005653:490-509 Msa1342450:intergenic 45.0%
CCAAGGATAAAGCTGAGAGA+TGG - tig0005653:487-506 Msa1342450:CDS 45.0%
GCTGAGAGATGGAAGACATT+TGG - tig0005653:498-517 Msa1342450:CDS 45.0%
GCTTGCAGATAAGCTGGAAT+TGG - tig0005653:814-833 Msa1342450:CDS 45.0%
! GTCATGGGATTTTCAATGGG+TGG - tig0005653:851-870 Msa1342450:CDS 45.0%
GCCTCAAATTCATTCCTCAC+AGG - tig0005653:891-910 Msa1342450:CDS 45.0%
! GGGGGTGAAATTTTCCATGA+AGG + tig0005653:1221-1240 Msa1342450:intergenic 45.0%
AGGTGGGAAAACGATGATCA+AGG + tig0005653:1612-1631 Msa1342450:intergenic 45.0%
TGACTCCAGTGGTAAACTAC+TGG - tig0005653:2035-2054 Msa1342450:intron 45.0%
GCCTTTGTGGACATGTTGTA+AGG + tig0005653:2073-2092 Msa1342450:intergenic 45.0%
GAGTTGCTCATTATGTCCCA+TGG - tig0005653:2131-2150 Msa1342450:intron 45.0%
ATGTCCCATGGCTTACATTC+TGG - tig0005653:2143-2162 Msa1342450:intron 45.0%
ACCACCAGAATGTAAGCCAT+GGG + tig0005653:2150-2169 Msa1342450:intergenic 45.0%
AACCACCAGAATGTAAGCCA+TGG + tig0005653:2151-2170 Msa1342450:intergenic 45.0%
CGGGACACCATAATTGGATT+TGG - tig0005653:2422-2441 Msa1342450:intron 45.0%
TATATCGTTGCAGCGTAGCA+GGG + tig0005653:2541-2560 Msa1342450:intergenic 45.0%
ATATATCGTTGCAGCGTAGC+AGG + tig0005653:2542-2561 Msa1342450:intergenic 45.0%
TACCATGAATTGCAAGGTGC+TGG - tig0005653:2587-2606 Msa1342450:CDS 45.0%
!!! GTATTTATTTATTTTTAATT+TGG - tig0005653:674-693 Msa1342450:CDS 5.0%
!!! AACATTTTTATTATTTTTTA+GGG - tig0005653:1088-1107 Msa1342450:intron 5.0%
!!! ATTCAAAAAAAAATATTTTA+CGG + tig0005653:1162-1181 Msa1342450:intergenic 5.0%
TCTTGGGGGTGGAGGTTTAA+TGG + tig0005653:431-450 Msa1342450:intergenic 50.0%
GGTGAACCACATGTTCTTGG+GGG + tig0005653:445-464 Msa1342450:intergenic 50.0%
CCTGGTGAACCACATGTTCT+TGG + tig0005653:448-467 Msa1342450:intergenic 50.0%
CCAAGAACATGTGGTTCACC+AGG - tig0005653:445-464 Msa1342450:CDS 50.0%
AGAACATGTGGTTCACCAGG+TGG - tig0005653:448-467 Msa1342450:CDS 50.0%
!! ATCCTTGGTGCTGTTATGGG+TGG + tig0005653:475-494 Msa1342450:intergenic 50.0%
GCATCACTTTCTCCATACCC+TGG + tig0005653:749-768 Msa1342450:intergenic 50.0%
TGAGGAGCTTGCAGATAAGC+TGG - tig0005653:808-827 Msa1342450:CDS 50.0%
AATGGGTGGCCAAGCTGTTT+GGG - tig0005653:865-884 Msa1342450:CDS 50.0%
! GGCAACATTGATGACTCCAG+TGG - tig0005653:2024-2043 Msa1342450:intron 50.0%
CTCCAGTGGTAAACTACTGG+TGG - tig0005653:2038-2057 Msa1342450:intron 50.0%
! TGGTAAACTACTGGTGGCGT+GGG - tig0005653:2044-2063 Msa1342450:intron 50.0%
AGCAACCTGCACAAGACCAA+TGG - tig0005653:2101-2120 Msa1342450:intron 50.0%
GCAACCTGCACAAGACCAAT+GGG - tig0005653:2102-2121 Msa1342450:intron 50.0%
TCCCATGGCTTACATTCTGG+TGG - tig0005653:2146-2165 Msa1342450:intron 50.0%
GTCCAGCACCTTGCAATTCA+TGG + tig0005653:2592-2611 Msa1342450:intergenic 50.0%
GCACTCACTTCCTCGACATT+TGG + tig0005653:2623-2642 Msa1342450:intergenic 50.0%
GAACCACATGTTCTTGGGGG+TGG + tig0005653:442-461 Msa1342450:intergenic 55.0%
GTCCACCCATAACAGCACCA+AGG - tig0005653:470-489 Msa1342450:CDS 55.0%
CAATGGGTGGCCAAGCTGTT+TGG - tig0005653:864-883 Msa1342450:CDS 55.0%
ATGGGTGGCCAAGCTGTTTG+GGG - tig0005653:866-885 Msa1342450:CDS 55.0%
TGAGGCAACCCCAAACAGCT+TGG + tig0005653:877-896 Msa1342450:intergenic 55.0%
CGCCACCAGTAGTTTACCAC+TGG + tig0005653:2043-2062 Msa1342450:intergenic 55.0%
! GTGGTAAACTACTGGTGGCG+TGG - tig0005653:2043-2062 Msa1342450:intron 55.0%
!! AGTGCCCATTGGTCTTGTGC+AGG + tig0005653:2109-2128 Msa1342450:intergenic 55.0%
! GAGCAACTCGAAGTGCCCAT+TGG + tig0005653:2120-2139 Msa1342450:intergenic 55.0%
CCACATGTTCTTGGGGGTGG+AGG + tig0005653:439-458 Msa1342450:intergenic 60.0%
CCTCCACCCCCAAGAACATG+TGG - tig0005653:436-455 Msa1342450:CDS 60.0%
GCTGTTATGGGTGGACCACC+TGG + tig0005653:466-485 Msa1342450:intergenic 60.0%
CTCGGGGAGACAGAACAGCA+GGG + tig0005653:2216-2235 Msa1342450:intergenic 60.0%
TCTCGGGGAGACAGAACAGC+AGG + tig0005653:2217-2236 Msa1342450:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0005653 gene 222 2859 222 ID=Msa1342450;Name=Msa1342450
tig0005653 mRNA 222 2859 222 ID=Msa1342450-mRNA-1;Parent=Msa1342450;Name=Msa1342450-mRNA-1;_AED=0.02;_eAED=0.02;_QI=148|1|1|1|1|1|4|180|344
tig0005653 exon 222 698 222 ID=Msa1342450-mRNA-1:exon:3602;Parent=Msa1342450-mRNA-1
tig0005653 exon 802 1066 802 ID=Msa1342450-mRNA-1:exon:3601;Parent=Msa1342450-mRNA-1
tig0005653 exon 2169 2380 2169 ID=Msa1342450-mRNA-1:exon:3600;Parent=Msa1342450-mRNA-1
tig0005653 exon 2451 2859 2451 ID=Msa1342450-mRNA-1:exon:3599;Parent=Msa1342450-mRNA-1
tig0005653 five_prime_UTR 2712 2859 2712 ID=Msa1342450-mRNA-1:five_prime_utr;Parent=Msa1342450-mRNA-1
tig0005653 CDS 2451 2711 2451 ID=Msa1342450-mRNA-1:cds;Parent=Msa1342450-mRNA-1
tig0005653 CDS 2169 2380 2169 ID=Msa1342450-mRNA-1:cds;Parent=Msa1342450-mRNA-1
tig0005653 CDS 802 1066 802 ID=Msa1342450-mRNA-1:cds;Parent=Msa1342450-mRNA-1
tig0005653 CDS 402 698 402 ID=Msa1342450-mRNA-1:cds;Parent=Msa1342450-mRNA-1
tig0005653 three_prime_UTR 222 401 222 ID=Msa1342450-mRNA-1:three_prime_utr;Parent=Msa1342450-mRNA-1
Gene Sequence

>Msa1342450

ATGTTGAGAAGAATTGCATCAATTTTGTTGATTGGAATTTTGGGTTTAGCATATGAAGCCATTAAACCTCCACCCCCAAGAACATGTGGTTCACCAGGTGGTCCACCCATAACAGCACCAAGGATAAAGCTGAGAGATGGAAGACATTTGGCCTACAAAGAACATGGTGTTCCAAGACAATTAGCTAGCAAGAAGATTGTATTCATACATGGGTTTGGTTCTTCTAGACATGATGCAGTCATTGCAACAAACCTTCCTAAGGGGTTGCTTGAAGAATTGGGAGCATATGTTGTGTCATTTGATAGACCAGGGTATGGAGAAAGTGATGCTGATCCAAAAAGAAGTGTAAAGAGTTTGGCTCTTGATATTGAGGAGCTTGCAGATAAGCTGGAATTGGGATCTAAGTTTTATGTCATGGGATTTTCAATGGGTGGCCAAGCTGTTTGGGGTTGCCTCAAATTCATTCCTCACAGACTTGCTGGGGCAACATTGATGACTCCAGTGGTAAACTACTGGTGGCGTGGGATTCCTTACAACATGTCCACAAAGGCCTATTATGAGCAACCTGCACAAGACCAATGGGCACTTCGAGTTGCTCATTATGTCCCATGGCTTACATTCTGGTGGTTTACTCAAAACTGGTTTCCTACATCAAGTGTAGTAAAAGGCAACCCTGCTGTTCTGTCTCCCCGAGATTTATCAATTGTTTTCAACAAGTCTATCAACAAAGAACATCAGTCACAAGTGAAACAACAAGGTGAGCACGAATCTATATGTCGGGACACCATAATTGGATTTGGAACTTGGGATTTTGATCCACTTGATCTTGATAACCCTTTCCCAGATAATACAATCAAAGTTCATCTATGGCAAGGTGCTGATGATAAGCTAGTCCCTGCTACGCTGCAACGATATATTGTTCAAAAACTTCCGTGGATTCAATACCATGAATTGCAAGGTGCTGGACACTTGTTTCCAAATGTCGAGGAAGTGAGTGCAGAAATCCTCAAAACTCAGTTGATGGATACAAAATAG

Protein sequence

>Msa1342450

MLRRIASILLIGILGLAYEAIKPPPPRTCGSPGGPPITAPRIKLRDGRHLAYKEHGVPRQLASKKIVFIHGFGSSRHDAVIATNLPKGLLEELGAYVVSFDRPGYGESDADPKRSVKSLALDIEELADKLELGSKFYVMGFSMGGQAVWGCLKFIPHRLAGATLMTPVVNYWWRGIPYNMSTKAYYEQPAQDQWALRVAHYVPWLTFWWFTQNWFPTSSVVKGNPAVLSPRDLSIVFNKSINKEHQSQVKQQGEHESICRDTIIGFGTWDFDPLDLDNPFPDNTIKVHLWQGADDKLVPATLQRYIVQKLPWIQYHELQGAGHLFPNVEEVSAEILKTQLMDTK*