AlfalfaGEDB | Msa1342790

M. sativa cultivar zhongmu-4 / Msa1342790

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0035091 GO:0043167 GO:0043168
PFAM: PF00646.36

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1342790	XP_013469223.1	99.005	402	4	0	1	402	1	402	0.0	833

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1342790	sp\|Q8VY21\|TLP3_ARATH	72.155	413	97	6	1	402	1	406	0.0	588

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1342790	A0A072VNQ0	99.005	402	4	0	1	402	1	402	0.0	833

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TFs/TRs:

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Gene ID	Type	Classification
Msa1342790	TF	TUB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0175260	Msa1342790	0.807013	6.217781e-50	-8.615850e-47
Msa0274630	Msa1342790	-0.800585	1.345051e-48	-8.615850e-47
Msa0314060	Msa1342790	-0.800381	1.480175e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1342790	MtrunA17_Chr1g0196071	99.005	402	4	0	1	402	1	402	0.0	833
Msa1342790	MtrunA17_Chr2g0286441	68.750	384	117	3	21	402	11	393	0.0	556
Msa1342790	MtrunA17_Chr2g0278511	53.009	432	168	10	1	402	1	427	6.55e-153	439
Msa1342790	MtrunA17_Chr5g0404321	52.482	423	173	7	1	402	1	416	9.34e-145	417
Msa1342790	MtrunA17_Chr1g0201891	50.572	437	175	10	1	402	1	431	6.94e-143	413
Msa1342790	MtrunA17_Chr8g0373001	51.667	420	177	6	1	402	1	412	6.73e-142	410
Msa1342790	MtrunA17_Chr1g0155301	55.153	359	149	6	50	402	70	422	5.91e-133	388
Msa1342790	MtrunA17_Chr2g0315641	50.279	358	145	5	50	402	42	371	3.69e-119	350
Msa1342790	MtrunA17_Chr2g0315651	44.875	361	161	8	50	402	37	367	6.33e-95	288
Msa1342790	MtrunA17_Chr8g0373361	41.487	417	200	17	1	395	11	405	1.20e-82	258

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1342790	AT2G47900.2	72.155	413	97	6	1	402	1	406	0.0	588
Msa1342790	AT2G47900.1	72.155	413	97	6	1	402	1	406	0.0	588
Msa1342790	AT2G47900.3	71.981	414	97	6	1	402	1	407	0.0	587
Msa1342790	AT3G06380.1	56.049	405	150	9	1	402	1	380	2.52e-147	423
Msa1342790	AT5G18680.1	58.470	366	124	8	50	402	39	389	6.69e-147	422
Msa1342790	AT1G43640.1	48.747	439	178	11	1	402	1	429	1.77e-140	407
Msa1342790	AT1G76900.2	47.380	458	182	9	1	402	1	455	5.74e-138	402
Msa1342790	AT1G76900.1	47.380	458	182	9	1	402	1	455	5.74e-138	402
Msa1342790	AT1G76900.3	47.380	458	182	9	1	402	1	455	5.74e-138	402
Msa1342790	AT1G25280.1	48.438	448	182	7	1	402	1	445	3.01e-136	397

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Find 160 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACAAAATACAACATA+TGG	0.429929	tig0006041:+10492	Msa1342790:intergenic
AAAATGTTAACAGGGGCCCT+AGG	0.556228	tig0006041:-11280	Msa1342790:intron
AACTTGCTGGACAATTGAGG+AGG	0.616449	tig0006041:+13429	Msa1342790:intergenic
AAGAAATTGAGTCTGCGTCG+GGG	0.697436	tig0006041:+11199	Msa1342780:intergenic
AAGAATGTTGTCGCGTGCGC+CGG	0.493919	tig0006041:-13495	Msa1342790:CDS
AAGATTATCCAATATTCAAT+TGG	0.403254	tig0006041:-10314	Msa1342790:three_prime_UTR
AAGGGATTTGACGTGAAATT+TGG	0.172126	tig0006041:-13690	Msa1342790:CDS
AAGGGGAGAGACTTAGAAGC+CGG	0.556618	tig0006041:+10579	Msa1342790:intergenic
AAGTCAAAATGATGGGGAGC+TGG	0.581065	tig0006041:-11087	Msa1342790:CDS
AATATTGGATAATCTTTGAA+AGG	0.473129	tig0006041:+10321	Msa1342790:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATTGAACAACAGAAATTG+AGG	+	tig0006041:10326-10345	Msa0152760:intergenic	30.0%
AGCTATGGTTTAGAAGAATT+GGG	-	tig0006041:10551-10570	Msa1342790:three_prime_UTR	30.0%
GATGTTAATGTTATTGCCAA+TGG	-	tig0006041:10718-10737	Msa1342790:intron	30.0%
ATTCCTGCTCAACAAATATT+TGG	+	tig0006041:11270-11289	Msa1342790:intergenic	30.0%
TAACTCACTCTATTTGAATG+AGG	+	tig0006041:11391-11410	Msa1342790:intergenic	30.0%
TGCTATATTAAACGAAATCG+CGG	-	tig0006041:12241-12260	Msa1342790:intron	30.0%
TTCTATATTCTGTGACACAT+GGG	-	tig0006041:12348-12367	Msa1342790:intron	30.0%
AGAAATGATATAGTCAGTGT+GGG	+	tig0006041:12540-12559	Msa1342790:intergenic	30.0%
ATTTGGATGATGTATCAAGA+AGG	-	tig0006041:12564-12583	Msa1342790:intron	30.0%
TAATCAACAAGTCATGTCAT+AGG	+	tig0006041:12629-12648	Msa1342790:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0006041	gene	10230	14143	10230	ID=Msa1342790;Name=Msa1342790
tig0006041	mRNA	10230	14143	10230	ID=Msa1342790-mRNA-1;Parent=Msa1342790;Name=Msa1342790-mRNA-1;_AED=0.07;_eAED=0.07;_QI=401\|1\|1\|1\|0.8\|0.83\|6\|463\|402
tig0006041	exon	10230	10680	10230	ID=Msa1342790-mRNA-1:exon:3793;Parent=Msa1342790-mRNA-1
tig0006041	exon	10803	11289	10803	ID=Msa1342790-mRNA-1:exon:3792;Parent=Msa1342790-mRNA-1
tig0006041	exon	11497	11673	11497	ID=Msa1342790-mRNA-1:exon:3791;Parent=Msa1342790-mRNA-1
tig0006041	exon	11761	11890	11761	ID=Msa1342790-mRNA-1:exon:3790;Parent=Msa1342790-mRNA-1
tig0006041	exon	12072	12159	12072	ID=Msa1342790-mRNA-1:exon:3789;Parent=Msa1342790-mRNA-1
tig0006041	exon	13404	14143	13404	ID=Msa1342790-mRNA-1:exon:3788;Parent=Msa1342790-mRNA-1
tig0006041	five_prime_UTR	13743	14143	13743	ID=Msa1342790-mRNA-1:five_prime_utr;Parent=Msa1342790-mRNA-1
tig0006041	CDS	13404	13742	13404	ID=Msa1342790-mRNA-1:cds;Parent=Msa1342790-mRNA-1
tig0006041	CDS	12072	12159	12072	ID=Msa1342790-mRNA-1:cds;Parent=Msa1342790-mRNA-1
tig0006041	CDS	11761	11890	11761	ID=Msa1342790-mRNA-1:cds;Parent=Msa1342790-mRNA-1
tig0006041	CDS	11497	11673	11497	ID=Msa1342790-mRNA-1:cds;Parent=Msa1342790-mRNA-1
tig0006041	CDS	10815	11289	10815	ID=Msa1342790-mRNA-1:cds;Parent=Msa1342790-mRNA-1
tig0006041	three_prime_UTR	10803	10814	10803	ID=Msa1342790-mRNA-1:three_prime_utr;Parent=Msa1342790-mRNA-1
tig0006041	three_prime_UTR	10230	10680	10230	ID=Msa1342790-mRNA-1:three_prime_utr;Parent=Msa1342790-mRNA-1

Gene Sequence

>Msa1342790

ATGTCATTTAGGAGTATGATCATGGATAGGAAGGGATTTGACGTGAAATTTGGGTATGGTATGAGATCAAGATCACAGTCACACTGTGATGTTAATGTTATTGCCAATGGTGCTTTGGTGATTGATGATGGGTTGAGTCAGAGTTGTTGGGCTAACATGCCCCATGAGCTTTTGAGGGATGTGCTTATGAGAATTGAGGTTTCAGATGATACTTGGCCGACTCGGAAGAATGTTGTCGCGTGCGCCGGTGTTTGCAGGAGTTGGAGAGAAATTGTGAAGGAACTTGTTAAGCCTCCTCAATTGTCCAGCAAGTTGACATTCCCTGTCTCCTTGAAGCAGCCTGGTCCAAGGGGCTCTCTTATTCAGTGCTATATTAAACGAAATCGCGGCGACCAAATTTATTATCTTTTTCTCAGTTTGAACCAAGCCTCAACTGATGACGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTGCAACCCACACTGACTATATCATTTCTCTAAATTTGGATGATGTATCAAGAAGGAGTAGCACCTATGTTGGGAAGTTGAGATCAAACTTTCTGGGCACCAAATTTACAGTGTATGATGCACACCCTCCAATTTATGGAGACAGATTTGCAAAGTCCCGCACCACCAGGCTAAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCAGGAAACTATCCCATCGTGCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCTAGGATTATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCGACGCAGACTCAATTTCTTCATAGCAGAGTTGATACTTCTCCATCTATCCCGTTCTTCAGATCAAAATCAACCCGCTCAGAGAATCTCCAATCAGCAGCACCTTTGATAAGTCAAAATGATGGGGAGCTGGTGTTAAAAAACAAGGCTCCTAGGTGGCATGAACAACTCCAATGCTGGTGTTTGAACTTCAATGGACGTGTGACAGTCGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCTAAAAATGGAGTTTCTGAGGAGGCCCAGGAAAATGTCATTCTGCAGTTTGGAAAAGTCGGAAAGGATGTGTTCACCATGGATTACCAGTATCCAATCTCTGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAGTGA

Protein sequence

>Msa1342790

MSFRSMIMDRKGFDVKFGYGMRSRSQSHCDVNVIANGALVIDDGLSQSCWANMPHELLRDVLMRIEVSDDTWPTRKNVVACAGVCRSWREIVKELVKPPQLSSKLTFPVSLKQPGPRGSLIQCYIKRNRGDQIYYLFLSLNQASTDDGKFLLAARKCRRATHTDYIISLNLDDVSRRSSTYVGKLRSNFLGTKFTVYDAHPPIYGDRFAKSRTTRLSLKQVSPRVPAGNYPIVHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRVDTSPSIPFFRSKSTRSENLQSAAPLISQNDGELVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEEAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE*