AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1342790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342790 MtrunA17_Chr1g0196071 99.005 402 4 0 1 402 1 402 0.0 833
Msa1342790 MtrunA17_Chr2g0286441 68.750 384 117 3 21 402 11 393 0.0 556
Msa1342790 MtrunA17_Chr2g0278511 53.009 432 168 10 1 402 1 427 6.55e-153 439
Msa1342790 MtrunA17_Chr5g0404321 52.482 423 173 7 1 402 1 416 9.34e-145 417
Msa1342790 MtrunA17_Chr1g0201891 50.572 437 175 10 1 402 1 431 6.94e-143 413
Msa1342790 MtrunA17_Chr8g0373001 51.667 420 177 6 1 402 1 412 6.73e-142 410
Msa1342790 MtrunA17_Chr1g0155301 55.153 359 149 6 50 402 70 422 5.91e-133 388
Msa1342790 MtrunA17_Chr2g0315641 50.279 358 145 5 50 402 42 371 3.69e-119 350
Msa1342790 MtrunA17_Chr2g0315651 44.875 361 161 8 50 402 37 367 6.33e-95 288
Msa1342790 MtrunA17_Chr8g0373361 41.487 417 200 17 1 395 11 405 1.20e-82 258
Msa1342790 MtrunA17_Chr8g0373331 34.158 404 197 10 1 393 1 346 3.61e-61 201
Msa1342790 MtrunA17_Chr8g0373341 33.333 399 180 13 1 392 1 320 9.42e-47 162
Msa1342790 MtrunA17_Chr1g0156151 53.521 142 62 1 65 202 66 207 4.83e-45 155
Msa1342790 MtrunA17_Chr8g0373351 35.275 309 121 9 99 394 44 286 1.07e-43 154
Msa1342790 MtrunA17_Chr3g0091401 38.776 98 54 1 92 189 8 99 5.67e-14 67.8
Msa1342790 MtrunA17_Chr2g0334041 50.000 62 24 1 340 401 305 359 1.71e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342790 AT2G47900.2 72.155 413 97 6 1 402 1 406 0.0 588
Msa1342790 AT2G47900.1 72.155 413 97 6 1 402 1 406 0.0 588
Msa1342790 AT2G47900.3 71.981 414 97 6 1 402 1 407 0.0 587
Msa1342790 AT3G06380.1 56.049 405 150 9 1 402 1 380 2.52e-147 423
Msa1342790 AT5G18680.1 58.470 366 124 8 50 402 39 389 6.69e-147 422
Msa1342790 AT1G43640.1 48.747 439 178 11 1 402 1 429 1.77e-140 407
Msa1342790 AT1G76900.2 47.380 458 182 9 1 402 1 455 5.74e-138 402
Msa1342790 AT1G76900.1 47.380 458 182 9 1 402 1 455 5.74e-138 402
Msa1342790 AT1G76900.3 47.380 458 182 9 1 402 1 455 5.74e-138 402
Msa1342790 AT1G25280.1 48.438 448 182 7 1 402 1 445 3.01e-136 397
Msa1342790 AT2G18280.2 51.238 404 184 6 1 402 1 393 1.07e-134 391
Msa1342790 AT2G18280.1 51.238 404 184 6 1 402 1 393 1.07e-134 391
Msa1342790 AT1G47270.3 53.117 369 149 5 42 402 36 388 7.15e-133 387
Msa1342790 AT1G47270.1 53.117 369 149 5 42 402 61 413 7.61e-133 387
Msa1342790 AT1G47270.2 53.117 369 149 5 42 402 60 412 1.03e-132 387
Msa1342790 AT1G43640.2 51.359 368 147 7 62 402 1 363 7.03e-130 378
Msa1342790 AT5G18680.2 58.497 306 100 7 109 402 7 297 9.76e-116 340
Msa1342790 AT3G06380.2 59.589 292 108 5 113 402 5 288 3.64e-113 333
Msa1342790 AT1G53320.1 49.036 363 152 6 48 402 42 379 6.15e-113 335
Msa1342790 AT1G25280.3 50.741 270 94 5 169 402 1 267 6.15e-83 255
Msa1342790 AT1G25280.2 50.741 270 94 5 169 402 1 267 6.15e-83 255
Msa1342790 AT1G61940.2 70.930 86 25 0 53 138 1 86 5.08e-40 144
Msa1342790 AT1G61940.1 72.131 61 17 0 53 113 1 61 1.43e-24 101
Msa1342790 AT1G61940.1 48.000 100 28 5 248 346 102 178 1.21e-12 67.8

Find 160 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATATCATTTCTCTAAATT+TGG 0.095614 tig0006041:-11804 Msa1342790:CDS
AAGGGATTTGACGTGAAATT+TGG 0.172126 tig0006041:-13690 Msa1342790:CDS
TTGTAACAGATCAAACTTTC+TGG 0.178818 tig0006041:-11660 Msa1342790:intron
GATGCACACCCTCCAATTTA+TGG 0.187148 tig0006041:-11617 Msa1342790:CDS
GCAAATCTGTCTCCATAAAT+TGG 0.193737 tig0006041:+11605 Msa1342790:intergenic
TCGCTTATATACAAAATAAA+AGG 0.198604 tig0006041:+10545 Msa1342790:intergenic
AATTGGGTGGAGTTGGAATT+AGG 0.226753 tig0006041:-13749 Msa1342790:five_prime_UTR
CAGCTATGGTTTAGAAGAAT+TGG 0.255976 tig0006041:-13801 Msa1342790:five_prime_UTR
ACTTTGTACCAATTGAATAT+TGG 0.258825 tig0006041:+10306 Msa1342790:intergenic
CTCATATGATCTGAATGTTT+TGG 0.268134 tig0006041:-11504 Msa1342790:CDS
TTAGGTTAACGATGTCATTT+AGG 0.284142 tig0006041:-13731 Msa1342790:exon
TCGCGTGCGCCGGTGTTTGC+AGG 0.297366 tig0006041:-13485 Msa1342790:CDS
ATGTATGTACTTGCCTGCTT+AGG 0.333120 tig0006041:-10355 Msa1342790:three_prime_UTR
ATTTAGTAGAATTGAGGAAT+TGG 0.341042 tig0006041:-13766 Msa1342790:five_prime_UTR
GAAAATGTCATTCTGCAGTT+TGG 0.348950 tig0006041:-10924 Msa1342790:CDS
TCACAAACCAATTGCATCTA+AGG 0.355657 tig0006041:+10419 Msa1342790:intergenic
TGCATCATACACTGTAAATT+TGG 0.359668 tig0006041:+11634 Msa1342790:intergenic
AGGGATTTGACGTGAAATTT+GGG 0.363887 tig0006041:-13689 Msa1342790:CDS
ATTGAGGAATTGGGTGGAGT+TGG 0.377499 tig0006041:-13756 Msa1342790:five_prime_UTR
TTTAGTAGAATTGAGGAATT+GGG 0.386629 tig0006041:-13765 Msa1342790:five_prime_UTR
CAATCACTCACAAGCAATCT+TGG 0.389643 tig0006041:+10812 Msa1342790:intergenic
ATTGGCCCTCACAGTATTGC+AGG 0.390301 tig0006041:-10642 Msa1342790:three_prime_UTR
TGTGTCTGTTTGATAGCTTT+TGG 0.398409 tig0006041:-10386 Msa1342790:three_prime_UTR
TAGGATTATGCAATGTGTTA+TGG 0.402541 tig0006041:-11261 Msa1342790:CDS
AAGATTATCCAATATTCAAT+TGG 0.403254 tig0006041:-10314 Msa1342790:three_prime_UTR
CAGTATTGCAGGTCTGATAT+AGG 0.405155 tig0006041:-10631 Msa1342790:three_prime_UTR
TGTAACAGATCAAACTTTCT+GGG 0.411602 tig0006041:-11659 Msa1342790:intron
CCTGCCTCAGCTGTTGAACC+TGG 0.411820 tig0006041:-11230 Msa1342790:CDS
GACAGGGAATGTCAACTTGC+TGG 0.412110 tig0006041:+13416 Msa1342790:intergenic
ATGGGTTGAGTCAGAGTTGT+TGG 0.417839 tig0006041:-13593 Msa1342790:CDS
GATCTGAAGAACGGGATAGA+TGG 0.420581 tig0006041:+11155 Msa1342790:intergenic
GACAAGTGCTACCTGCTTCA+AGG 0.422783 tig0006041:+13392 Msa1342790:intergenic
TAGTTTCCTGCAGGAACTCT+TGG 0.422898 tig0006041:+11542 Msa1342790:intergenic
AAAACACAAAATACAACATA+TGG 0.429929 tig0006041:+10492 Msa1342790:intergenic
GATTGCTTGTGAGTGATTGC+TGG 0.433585 tig0006041:-10808 Msa1342790:exon
TGCGTCGGGGCCACACCTCC+AGG 0.436166 tig0006041:+11212 Msa1342790:intergenic
TTATCAAAGGTGCTGCTGAT+TGG 0.436264 tig0006041:+11108 Msa1342790:intergenic
GCGCCGGTGTTTGCAGGAGT+TGG 0.436346 tig0006041:-13479 Msa1342790:CDS
ACGGTAAAGGGTAGAGAAGA+AGG 0.436424 tig0006041:+14108 Msa1342790:intergenic
ACAACGACCTTAGATGCAAT+TGG 0.442451 tig0006041:-10426 Msa1342790:three_prime_UTR
TGTTATTGCCAATGGTGCTT+TGG 0.443517 tig0006041:-13625 Msa1342790:CDS
GAAGAAATTGAGTCTGCGTC+GGG 0.444561 tig0006041:+11198 Msa1342790:intergenic
TTGAGGTTTCAGATGATACT+TGG 0.450054 tig0006041:-13527 Msa1342790:CDS
AGCTATCAAACAGACACAAC+TGG 0.452900 tig0006041:+10391 Msa1342790:intergenic
ATAACACATTGCATAATCCT+AGG 0.454350 tig0006041:+11263 Msa1342790:intergenic
GGTGCTTTGGTGATTGATGA+TGG 0.458578 tig0006041:-13612 Msa1342790:CDS
AATGCTTCAAAGGCAGAGAT+TGG 0.458777 tig0006041:+10861 Msa1342790:intergenic
CTGTTGTTCAATCACTCTGA+TGG 0.465449 tig0006041:-14019 Msa1342790:five_prime_UTR
TGCTGGTGTTTGAACTTCAA+TGG 0.466360 tig0006041:-11023 Msa1342790:CDS
TAATTAATTTAGTAGAATTG+AGG 0.467029 tig0006041:-13772 Msa1342790:five_prime_UTR
GCTACCTGCTTCAAGGAGAC+AGG 0.468323 tig0006041:+13399 Msa1342790:intergenic
TGAGTTGTTGCAGAGAGTGC+GGG 0.471120 tig0006041:+14053 Msa1342790:intergenic
GAGACTTAGCCTGGTGGTGC+GGG 0.471988 tig0006041:+11577 Msa1342790:intergenic
CCAGGTTCAACAGCTGAGGC+AGG 0.472095 tig0006041:+11230 Msa1342790:intergenic
AATATTGGATAATCTTTGAA+AGG 0.473129 tig0006041:+10321 Msa1342790:intergenic
ATACAAAATAAAAGGGAGAA+GGG 0.473379 tig0006041:+10553 Msa1342790:intergenic
AGCTATGGTTTAGAAGAATT+GGG 0.473724 tig0006041:-13800 Msa1342790:five_prime_UTR
TGTATGTACTTGCCTGCTTA+GGG 0.475392 tig0006041:-10354 Msa1342790:three_prime_UTR
CATCATGCAGCCTGGTCCAA+GGG 0.476151 tig0006041:-12147 Msa1342790:intron
CGAATAACACAACAAAGACT+TGG 0.477158 tig0006041:+10277 Msa1342790:intergenic
TACAAAATAAAAGGGAGAAG+GGG 0.477609 tig0006041:+10554 Msa1342790:intergenic
GAAGGAGTAGCACCTATGTT+GGG 0.479960 tig0006041:-11769 Msa1342790:CDS
GAGTATGATCATGGATAGGA+AGG 0.482584 tig0006041:-13709 Msa1342790:CDS
TTGTGAGTGATTGCTGGAAC+AGG 0.483302 tig0006041:-10802 Msa1342790:intron
TGAAGTTCAAACACCAGCAT+TGG 0.484021 tig0006041:+11027 Msa1342790:intergenic
CAAAGGCAGAGATTGGATAC+TGG 0.485873 tig0006041:+10868 Msa1342790:intergenic
ATCAATCACCAAAGCACCAT+TGG 0.486769 tig0006041:+13617 Msa1342790:intergenic
GTCATTTAGGAGTATGATCA+TGG 0.487718 tig0006041:-13718 Msa1342790:CDS
CACTTGCTTGAGACTTAGCC+TGG 0.491047 tig0006041:+11568 Msa1342790:intergenic
TGGAGTTTCTGAGGAGGCCC+AGG 0.493680 tig0006041:-10946 Msa1342790:CDS
CGCTTATATACAAAATAAAA+GGG 0.493916 tig0006041:+10546 Msa1342790:intergenic
AAGAATGTTGTCGCGTGCGC+CGG 0.493919 tig0006041:-13495 Msa1342790:CDS
AGCTGTTGAACCTGGAGGTG+TGG 0.496026 tig0006041:-11222 Msa1342790:CDS
TGATTGAACAACAGAAATTG+AGG 0.506055 tig0006041:+14028 Msa1342790:intergenic
ATAAGAGAGCCCCTTGGACC+AGG 0.512782 tig0006041:+12137 Msa1342790:intergenic
TAAAGGGTAGAGAAGAAGGT+TGG 0.512987 tig0006041:+14112 Msa1342790:intergenic
TCAATCACTCTGATGGAAGA+AGG 0.514260 tig0006041:-14012 Msa1342790:five_prime_UTR
GTGCTTTGGTGATTGATGAT+GGG 0.516000 tig0006041:-13611 Msa1342790:CDS
TTTGACGTGAAATTTGGGTA+TGG 0.516313 tig0006041:-13684 Msa1342790:CDS
AGAAGGAGTAGCACCTATGT+TGG 0.521149 tig0006041:-11770 Msa1342790:CDS
TCATCATGCAGCCTGGTCCA+AGG 0.523744 tig0006041:-12148 Msa1342790:intron
CTTTGATAAGTCAAAATGAT+GGG 0.523813 tig0006041:-11094 Msa1342790:CDS
GGAATGTAGCAACCCTAAGC+AGG 0.528589 tig0006041:+10342 Msa1342790:intergenic
GTTGCAGAGAGTGCGGGGAA+AGG 0.530528 tig0006041:+14059 Msa1342790:intergenic
GCACATCCCTCAAAAGCTCA+TGG 0.537457 tig0006041:+13559 Msa1342790:intergenic
TTGCAAAGTCCCGCACCACC+AGG 0.537675 tig0006041:-11586 Msa1342790:CDS
TATACAAAATAAAAGGGAGA+AGG 0.538868 tig0006041:+10552 Msa1342790:intergenic
TTCAACAGCTGAGGCAGGGA+TGG 0.540786 tig0006041:+11235 Msa1342790:intergenic
ACAAAATAAAAGGGAGAAGG+GGG 0.542378 tig0006041:+10555 Msa1342790:intergenic
GCTTTCTGTTTAGTCCAACC+CGG 0.543246 tig0006041:-10598 Msa1342790:three_prime_UTR
AGTAAAGTGAGAAACGGTAA+AGG 0.543490 tig0006041:+14095 Msa1342790:intergenic
ATTCCCTGTCTCCTTGAAGC+AGG 0.548762 tig0006041:-13403 Msa1342790:intron
CAGATGATACTTGGCCGACT+CGG 0.549792 tig0006041:-13518 Msa1342790:CDS
CACATCCCTCAAAAGCTCAT+GGG 0.551644 tig0006041:+13560 Msa1342790:intergenic
GCATATTGCAAATGCTTCAA+AGG 0.553851 tig0006041:+10851 Msa1342790:intergenic
CCTTTGATAAGTCAAAATGA+TGG 0.555873 tig0006041:-11095 Msa1342790:CDS
AAAATGTTAACAGGGGCCCT+AGG 0.556228 tig0006041:-11280 Msa1342790:intron
TGGGTTGAGTCAGAGTTGTT+GGG 0.556484 tig0006041:-13592 Msa1342790:CDS
AAGGGGAGAGACTTAGAAGC+CGG 0.556618 tig0006041:+10579 Msa1342790:intergenic
GGATGTGCTTATGAGAATTG+AGG 0.557422 tig0006041:-13544 Msa1342790:CDS
ATACCTCAACTTCCCAACAT+AGG 0.558903 tig0006041:+11757 Msa1342790:intergenic
GTCAACTTGCTGGACAATTG+AGG 0.559973 tig0006041:+13426 Msa1342790:intergenic
TCTTGGTGTCAAAGCTGCTA+AGG 0.561466 tig0006041:+10829 Msa1342790:intergenic
GAGAAATGATATAGTCAGTG+TGG 0.564360 tig0006041:+11813 Msa1342790:intergenic
GTAAAGTGAGAAACGGTAAA+GGG 0.565184 tig0006041:+14096 Msa1342790:intergenic
AATCTGTCTCCATAAATTGG+AGG 0.567458 tig0006041:+11608 Msa1342790:intergenic
CACTGAATAAGAGAGCCCCT+TGG 0.567563 tig0006041:+12131 Msa1342790:intergenic
TGATTGGAGATTCTCTGAGC+GGG 0.569183 tig0006041:+11124 Msa1342790:intergenic
GCACCTATGTTGGGAAGTTG+AGG 0.569372 tig0006041:-11760 Msa1342790:intron
CAATCACTCTGATGGAAGAA+GGG 0.569385 tig0006041:-14011 Msa1342790:five_prime_UTR
AGGCAGAGTAAAGTGAGAAA+CGG 0.569573 tig0006041:+14089 Msa1342790:intergenic
TGCATTATATTTAACAGACA+TGG 0.571593 tig0006041:-10516 Msa1342790:three_prime_UTR
TGAAGAAATTGAGTCTGCGT+CGG 0.573052 tig0006041:+11197 Msa1342790:intergenic
GGTCGTTGTCTACAATCTCA+TGG 0.574634 tig0006041:+10440 Msa1342790:intergenic
ATTCTGCAGTTTGGAAAAGT+CGG 0.574704 tig0006041:-10915 Msa1342790:CDS
GTGCGGGGAAAGGAGAGAAG+AGG 0.577607 tig0006041:+14069 Msa1342790:intergenic
TCATATGAGACATGCACGAT+GGG 0.577709 tig0006041:+11518 Msa1342790:intergenic
GAGAGACTTAGAAGCCGGGT+TGG 0.578090 tig0006041:+10584 Msa1342790:intergenic
TTGAGTTGTTGCAGAGAGTG+CGG 0.578891 tig0006041:+14052 Msa1342790:intergenic
AAGTCAAAATGATGGGGAGC+TGG 0.581065 tig0006041:-11087 Msa1342790:CDS
TGGAGTTGTTCATGCCACCT+AGG 0.583552 tig0006041:+11047 Msa1342790:intergenic
TTTGCAGCCTCAACTGATGA+CGG 0.583581 tig0006041:-11875 Msa1342790:intron
GGCATGAACAACTCCAATGC+TGG 0.585250 tig0006041:-11040 Msa1342790:CDS
TGAGACTTAGCCTGGTGGTG+CGG 0.585690 tig0006041:+11576 Msa1342790:intergenic
ACGATGGGATAGTTTCCTGC+AGG 0.585969 tig0006041:+11533 Msa1342790:intergenic
GATGTTAATGTTATTGCCAA+TGG 0.594465 tig0006041:-13633 Msa1342790:CDS
ATCTGTCTCCATAAATTGGA+GGG 0.597162 tig0006041:+11609 Msa1342790:intergenic
CTACCTGCTTCAAGGAGACA+GGG 0.598753 tig0006041:+13400 Msa1342790:intergenic
AGGGGAGAGACTTAGAAGCC+GGG 0.599238 tig0006041:+10580 Msa1342790:intergenic
GTGTCTCCAAGAGTTCCTGC+AGG 0.601279 tig0006041:-11548 Msa1342790:CDS
GACACTTGCGTGCAGCAAGA+AGG 0.601304 tig0006041:+11846 Msa1342790:intergenic
CAGGTTCAACAGCTGAGGCA+GGG 0.604724 tig0006041:+11231 Msa1342790:intergenic
GAATAACACAACAAAGACTT+GGG 0.605838 tig0006041:+10278 Msa1342790:intergenic
AGTAGAATTGAGGAATTGGG+TGG 0.605987 tig0006041:-13762 Msa1342790:five_prime_UTR
GAACTTGCCGTCATCAGTTG+AGG 0.606120 tig0006041:+11868 Msa1342790:intergenic
GATTGGATACTGGTAATCCA+TGG 0.610280 tig0006041:+10878 Msa1342790:intergenic
AGAAATGATATAGTCAGTGT+GGG 0.610923 tig0006041:+11814 Msa1342790:intergenic
GCCTCAGCTGTTGAACCTGG+AGG 0.611858 tig0006041:-11227 Msa1342790:CDS
TTAGGAGTATGATCATGGAT+AGG 0.615050 tig0006041:-13713 Msa1342790:CDS
AACTTGCTGGACAATTGAGG+AGG 0.616449 tig0006041:+13429 Msa1342790:intergenic
TCAGACCTGCAATACTGTGA+GGG 0.617106 tig0006041:+10637 Msa1342790:intergenic
TAACACATTGCATAATCCTA+GGG 0.617287 tig0006041:+11264 Msa1342790:intergenic
ATCATGCAGCCTGGTCCAAG+GGG 0.619178 tig0006041:-12146 Msa1342790:intron
ACCTCCAGGTTCAACAGCTG+AGG 0.623409 tig0006041:+11226 Msa1342790:intergenic
CTGATTGGAGATTCTCTGAG+CGG 0.624740 tig0006041:+11123 Msa1342790:intergenic
ATCATATGAGACATGCACGA+TGG 0.626290 tig0006041:+11517 Msa1342790:intergenic
ACATCCCTCAAAAGCTCATG+GGG 0.631071 tig0006041:+13561 Msa1342790:intergenic
AGTATGATCATGGATAGGAA+GGG 0.631347 tig0006041:-13708 Msa1342790:CDS
GCAGTTTGGAAAAGTCGGAA+AGG 0.632984 tig0006041:-10910 Msa1342790:CDS
ATTTGGATGATGTATCAAGA+AGG 0.634683 tig0006041:-11787 Msa1342790:CDS
GAGTTGTTGCAGAGAGTGCG+GGG 0.638794 tig0006041:+14054 Msa1342790:intergenic
CGGAAAGGATGTGTTCACCA+TGG 0.642135 tig0006041:-10895 Msa1342790:CDS
TGCTATATTAAACGAAATCG+CGG 0.643232 tig0006041:-12110 Msa1342790:CDS
GCGACAACATTCTTCCGAGT+CGG 0.645949 tig0006041:+13504 Msa1342790:intergenic
TTTGATAAGTCAAAATGATG+GGG 0.648482 tig0006041:-11093 Msa1342790:CDS
GAGTTGGAGAGAAATTGTGA+AGG 0.664353 tig0006041:-13463 Msa1342790:CDS
TCTCCAACTCCTGCAAACAC+CGG 0.665494 tig0006041:+13476 Msa1342780:intergenic
ATCAGACCTGCAATACTGTG+AGG 0.677842 tig0006041:+10636 Msa1342780:intergenic
AAGAAATTGAGTCTGCGTCG+GGG 0.697436 tig0006041:+11199 Msa1342780:intergenic
TTGCTTGAGACTTAGCCTGG+TGG 0.709949 tig0006041:+11571 Msa1342780:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTGAATTTTGAAAATTAAAA+TGG + tig0006041:10427-10446 Msa1342790:intergenic 15.0%
!! TAATTAATTTAGTAGAATTG+AGG - tig0006041:10579-10598 Msa1342790:three_prime_UTR 15.0%
!! AAAAAAATATAAGATACATC+GGG + tig0006041:10990-11009 Msa1342790:intergenic 15.0%
!! GAAAAAAATATAAGATACAT+CGG + tig0006041:10991-11010 Msa1342790:intergenic 15.0%
!! TGAGAAAAAGATAATAAATT+TGG + tig0006041:12270-12289 Msa1342790:intergenic 15.0%
!! ACATCTTAAATTTAAATCTC+TGG + tig0006041:12315-12334 Msa1342790:intergenic 20.0%
!!! AGATTTAAATTTAAGATGTG+TGG - tig0006041:12316-12335 Msa1342790:intron 20.0%
!! AAATCAAATCAACATTACAA+AGG + tig0006041:12458-12477 Msa1342790:intergenic 20.0%
!! CTATATCATTTCTCTAAATT+TGG - tig0006041:12547-12566 Msa1342790:intron 20.0%
!! TAAATAAGAATTCAATAGCA+GGG + tig0006041:13029-13048 Msa1342790:intergenic 20.0%
!! TTAGTTAACAAAATGTTAAC+AGG - tig0006041:13062-13081 Msa1342790:intron 20.0%
!! TAGTTAACAAAATGTTAACA+GGG - tig0006041:13063-13082 Msa1342790:intron 20.0%
!! CGCTTATATACAAAATAAAA+GGG + tig0006041:13808-13827 Msa1342790:intergenic 20.0%
!! TCGCTTATATACAAAATAAA+AGG + tig0006041:13809-13828 Msa1342790:intergenic 20.0%
!! AAAACACAAAATACAACATA+TGG + tig0006041:13862-13881 Msa1342790:intergenic 20.0%
!! AATATTGGATAATCTTTGAA+AGG + tig0006041:14033-14052 Msa1342790:intergenic 20.0%
!! AAGATTATCCAATATTCAAT+TGG - tig0006041:14037-14056 Msa1342790:five_prime_UTR 20.0%
! ACAAAAACTAATTTCCATCA+GGG + tig0006041:10449-10468 Msa1342790:intergenic 25.0%
! TACAAAAACTAATTTCCATC+AGG + tig0006041:10450-10469 Msa1342790:intergenic 25.0%
!! TGATTTTTATTCATCAGCTA+TGG - tig0006041:10536-10555 Msa1342790:three_prime_UTR 25.0%
! ATTTAGTAGAATTGAGGAAT+TGG - tig0006041:10585-10604 Msa1342790:three_prime_UTR 25.0%
! TTTAGTAGAATTGAGGAATT+GGG - tig0006041:10586-10605 Msa1342790:three_prime_UTR 25.0%
! AATTGTTCGTTTACAAAACT+AGG + tig0006041:11519-11538 Msa1342790:intergenic 25.0%
!!! TTTTTTCTACTAAGATGCAA+AGG - tig0006041:11987-12006 Msa1342790:intron 25.0%
!! TTTCTCAACTTTTGTTCAAT+TGG - tig0006041:12054-12073 Msa1342790:intron 25.0%
!! TTCTCAACTTTTGTTCAATT+GGG - tig0006041:12055-12074 Msa1342790:intron 25.0%
!!! GTTTTATTCTTATCACACAA+AGG - tig0006041:12124-12143 Msa1342790:CDS 25.0%
! TCTTAATATCATACAAGTTG+AGG + tig0006041:12406-12425 Msa1342790:intergenic 25.0%
!! TCATATGATCTGAATGTTTT+GGG - tig0006041:12848-12867 Msa1342790:intron 25.0%
! CTAAGAAACAATCGATAATA+GGG + tig0006041:12972-12991 Msa1342790:intergenic 25.0%
! ACTAAGAAACAATCGATAAT+AGG + tig0006041:12973-12992 Msa1342790:intergenic 25.0%
! CTAAATAAGAATTCAATAGC+AGG + tig0006041:13030-13049 Msa1342790:intergenic 25.0%
! AGTTAACAAAATGTTAACAG+GGG - tig0006041:13064-13083 Msa1342790:intron 25.0%
! CTTTGATAAGTCAAAATGAT+GGG - tig0006041:13257-13276 Msa1342790:intron 25.0%
! TTTGATAAGTCAAAATGATG+GGG - tig0006041:13258-13277 Msa1342790:intron 25.0%
! ATACAAAATAAAAGGGAGAA+GGG + tig0006041:13801-13820 Msa1342790:intergenic 25.0%
! TATACAAAATAAAAGGGAGA+AGG + tig0006041:13802-13821 Msa1342790:intergenic 25.0%
! TGCATTATATTTAACAGACA+TGG - tig0006041:13835-13854 Msa1342790:five_prime_UTR 25.0%
!!! CAAACCAACTTATGTTTTTT+TGG - tig0006041:13888-13907 Msa1342790:five_prime_UTR 25.0%
! ACTTTGTACCAATTGAATAT+TGG + tig0006041:14048-14067 Msa1342790:intergenic 25.0%
TGATTGAACAACAGAAATTG+AGG + tig0006041:10326-10345 Msa0152760:intergenic 30.0%
! GCAATTTTCGTCAAATTTCT+CGG - tig0006041:10375-10394 Msa1342790:three_prime_UTR 30.0%
! ATTTTCAAAATTCACCCTGA+TGG - tig0006041:10432-10451 Msa1342790:three_prime_UTR 30.0%
! AGTTTTTGTACATGCAATTG+TGG - tig0006041:10460-10479 Msa1342790:three_prime_UTR 30.0%
AGCTATGGTTTAGAAGAATT+GGG - tig0006041:10551-10570 Msa1342790:three_prime_UTR 30.0%
! TTAGGTTAACGATGTCATTT+AGG - tig0006041:10620-10639 Msa1342790:three_prime_UTR 30.0%
GATGTTAATGTTATTGCCAA+TGG - tig0006041:10718-10737 Msa1342790:intron 30.0%
! AAACCAAATATTTGTTGAGC+AGG - tig0006041:11264-11283 Msa1342790:CDS 30.0%
ATTCCTGCTCAACAAATATT+TGG + tig0006041:11270-11289 Msa1342790:intergenic 30.0%
! AAATATTTGTTGAGCAGGAA+TGG - tig0006041:11269-11288 Msa1342790:CDS 30.0%
TAACTCACTCTATTTGAATG+AGG + tig0006041:11391-11410 Msa1342790:intergenic 30.0%
! CATTTTTGTAAATGAAAGCC+AGG - tig0006041:11444-11463 Msa1342790:intron 30.0%
! TACATCCTTTTGAACTGAAA+TGG + tig0006041:11866-11885 Msa1342790:intergenic 30.0%
!! TTATTTCAAGTTACAGGCAA+TGG + tig0006041:11948-11967 Msa1342790:intergenic 30.0%
!! CAATGCTTATTTCAAGTTAC+AGG + tig0006041:11954-11973 Msa1342790:intergenic 30.0%
TGCTATATTAAACGAAATCG+CGG - tig0006041:12241-12260 Msa1342790:intron 30.0%
TTCTATATTCTGTGACACAT+GGG - tig0006041:12348-12367 Msa1342790:intron 30.0%
AGAAATGATATAGTCAGTGT+GGG + tig0006041:12540-12559 Msa1342790:intergenic 30.0%
ATTTGGATGATGTATCAAGA+AGG - tig0006041:12564-12583 Msa1342790:intron 30.0%
TAATCAACAAGTCATGTCAT+AGG + tig0006041:12629-12648 Msa1342790:intergenic 30.0%
ATTATTACCTATTGCCTTCT+GGG - tig0006041:12645-12664 Msa1342790:intron 30.0%
TTGTAACAGATCAAACTTTC+TGG - tig0006041:12691-12710 Msa1342790:intron 30.0%
TGTAACAGATCAAACTTTCT+GGG - tig0006041:12692-12711 Msa1342790:intron 30.0%
TGCATCATACACTGTAAATT+TGG + tig0006041:12720-12739 Msa1342790:intergenic 30.0%
! CTCATATGATCTGAATGTTT+TGG - tig0006041:12847-12866 Msa1342790:intron 30.0%
TAACACATTGCATAATCCTA+GGG + tig0006041:13090-13109 Msa1342790:intergenic 30.0%
ATAACACATTGCATAATCCT+AGG + tig0006041:13091-13110 Msa1342790:intergenic 30.0%
TAGGATTATGCAATGTGTTA+TGG - tig0006041:13090-13109 Msa1342790:intron 30.0%
!! TTGATTTTGATCTGAAGAAC+GGG + tig0006041:13207-13226 Msa1342790:intergenic 30.0%
!! GTTGATTTTGATCTGAAGAA+CGG + tig0006041:13208-13227 Msa1342790:intergenic 30.0%
!!! CCATCATTTTGACTTATCAA+AGG + tig0006041:13259-13278 Msa1342790:intergenic 30.0%
CCTTTGATAAGTCAAAATGA+TGG - tig0006041:13256-13275 Msa1342790:intron 30.0%
TTCAGTTAAAAATTTCCAGC+TGG - tig0006041:13366-13385 Msa1342790:intron 30.0%
!!! ACATAGTTGCTGATTTTACT+TGG - tig0006041:13667-13686 Msa1342790:CDS 30.0%
TACAAAATAAAAGGGAGAAG+GGG + tig0006041:13800-13819 Msa1342790:intergenic 30.0%
ATGGCCAAAAAAACATAAGT+TGG + tig0006041:13895-13914 Msa1342790:intergenic 30.0%
GAATAACACAACAAAGACTT+GGG + tig0006041:14076-14095 Msa1342790:intergenic 30.0%
GTAAAGTGAGAAACGGTAAA+GGG + tig0006041:10258-10277 Msa0152760:intergenic 35.0%
AGTAAAGTGAGAAACGGTAA+AGG + tig0006041:10259-10278 Msa0152760:intergenic 35.0%
CAGCTATGGTTTAGAAGAAT+TGG - tig0006041:10550-10569 Msa1342790:three_prime_UTR 35.0%
! GTCATTTAGGAGTATGATCA+TGG - tig0006041:10633-10652 Msa1342790:three_prime_UTR 35.0%
! TTAGGAGTATGATCATGGAT+AGG - tig0006041:10638-10657 Msa1342790:three_prime_UTR 35.0%
AGTATGATCATGGATAGGAA+GGG - tig0006041:10643-10662 Msa1342790:three_prime_UTR 35.0%
AAGGGATTTGACGTGAAATT+TGG - tig0006041:10661-10680 Msa1342790:three_prime_UTR 35.0%
AGGGATTTGACGTGAAATTT+GGG - tig0006041:10662-10681 Msa1342790:intron 35.0%
TTTGACGTGAAATTTGGGTA+TGG - tig0006041:10667-10686 Msa1342790:intron 35.0%
TTGAGGTTTCAGATGATACT+TGG - tig0006041:10824-10843 Msa1342790:CDS 35.0%
!! ACATCCTTTTTGAGCTGAAT+TGG - tig0006041:11084-11103 Msa1342790:CDS 35.0%
!! CATCCTTTTTGAGCTGAATT+GGG - tig0006041:11085-11104 Msa1342790:CDS 35.0%
AAACCCAATTCAGCTCAAAA+AGG + tig0006041:11091-11110 Msa1342790:intergenic 35.0%
ACTCTATTTGAATGAGGTGT+GGG + tig0006041:11385-11404 Msa1342790:intergenic 35.0%
GAGAGAACAAGAATGATTGT+TGG + tig0006041:11565-11584 Msa1342790:intergenic 35.0%
TAACTCATTCTCTTTGAGTG+AGG - tig0006041:11587-11606 Msa1342790:CDS 35.0%
TCATACCTGCTCAACAAATA+TGG - tig0006041:11667-11686 Msa1342790:intron 35.0%
CATACCTGCTCAACAAATAT+GGG - tig0006041:11668-11687 Msa1342790:intron 35.0%
! AAAACCCATATTTGTTGAGC+AGG + tig0006041:11675-11694 Msa1342790:intergenic 35.0%
! CCTTTTGAACTGAAATGGTT+AGG + tig0006041:11861-11880 Msa1342790:intergenic 35.0%
CCTAACCATTTCAGTTCAAA+AGG - tig0006041:11858-11877 Msa1342790:CDS 35.0%
TGCTTAAACTCATGCTACAT+TGG + tig0006041:12091-12110 Msa1342790:intergenic 35.0%
! ATTATTTTCATCATGCAGCC+TGG - tig0006041:12196-12215 Msa1342790:intron 35.0%
! CTTTTTCTCAGTTTGAACCA+AGG - tig0006041:12280-12299 Msa1342790:intron 35.0%
GTTCTATATTCTGTGACACA+TGG - tig0006041:12347-12366 Msa1342790:intron 35.0%
! TCATACAAGTTGAGGTTACA+AGG + tig0006041:12398-12417 Msa1342790:intergenic 35.0%
GAGAAATGATATAGTCAGTG+TGG + tig0006041:12541-12560 Msa1342790:intergenic 35.0%
GATTATTACCTATTGCCTTC+TGG - tig0006041:12644-12663 Msa1342790:intron 35.0%
ATCTGTCTCCATAAATTGGA+GGG + tig0006041:12745-12764 Msa1342790:intergenic 35.0%
AATCTGTCTCCATAAATTGG+AGG + tig0006041:12746-12765 Msa1342790:intergenic 35.0%
GCAAATCTGTCTCCATAAAT+TGG + tig0006041:12749-12768 Msa1342790:intergenic 35.0%
TTTAGGCAAAGAGAATATCG+TGG - tig0006041:12907-12926 Msa1342790:intron 35.0%
AAATAGAGCCAACTCTTGAA+AGG + tig0006041:13006-13025 Msa1342790:intergenic 35.0%
TGTTAAAAAACAAGGCTCCT+AGG - tig0006041:13287-13306 Msa1342790:intron 35.0%
TCCTAAAAATGGAGTTTCTG+AGG - tig0006041:13396-13415 Msa1342790:intron 35.0%
!! TCCTCAGAAACTCCATTTTT+AGG + tig0006041:13400-13419 Msa1342790:intergenic 35.0%
! TAAAAATGGAGTTTCTGAGG+AGG - tig0006041:13399-13418 Msa1342790:intron 35.0%
GAAAATGTCATTCTGCAGTT+TGG - tig0006041:13427-13446 Msa1342790:CDS 35.0%
ATTCTGCAGTTTGGAAAAGT+CGG - tig0006041:13436-13455 Msa1342790:CDS 35.0%
GCATATTGCAAATGCTTCAA+AGG + tig0006041:13503-13522 Msa1342790:intergenic 35.0%
GTGATCGTTGAGATTAATGA+AGG - tig0006041:13641-13660 Msa1342790:CDS 35.0%
ACAAAATAAAAGGGAGAAGG+GGG + tig0006041:13799-13818 Msa1342790:intergenic 35.0%
TCACAAACCAATTGCATCTA+AGG + tig0006041:13935-13954 Msa1342790:intergenic 35.0%
!! TGTGTCTGTTTGATAGCTTT+TGG - tig0006041:13965-13984 Msa1342790:five_prime_UTR 35.0%
CGAATAACACAACAAAGACT+TGG + tig0006041:14077-14096 Msa1342790:intergenic 35.0%
TAAAGGGTAGAGAAGAAGGT+TGG + tig0006041:10242-10261 Msa0152760:intergenic 40.0%
AGGCAGAGTAAAGTGAGAAA+CGG + tig0006041:10265-10284 Msa0152760:intergenic 40.0%
CTGTTGTTCAATCACTCTGA+TGG - tig0006041:10332-10351 Msa1342790:three_prime_UTR 40.0%
TCAATCACTCTGATGGAAGA+AGG - tig0006041:10339-10358 Msa1342790:three_prime_UTR 40.0%
CAATCACTCTGATGGAAGAA+GGG - tig0006041:10340-10359 Msa1342790:three_prime_UTR 40.0%
AGTAGAATTGAGGAATTGGG+TGG - tig0006041:10589-10608 Msa1342790:three_prime_UTR 40.0%
AATTGGGTGGAGTTGGAATT+AGG - tig0006041:10602-10621 Msa1342790:three_prime_UTR 40.0%
GAGTATGATCATGGATAGGA+AGG - tig0006041:10642-10661 Msa1342790:three_prime_UTR 40.0%
TGTTATTGCCAATGGTGCTT+TGG - tig0006041:10726-10745 Msa1342790:intron 40.0%
! ATCAATCACCAAAGCACCAT+TGG + tig0006041:10737-10756 Msa1342790:intergenic 40.0%
! GTGCTTTGGTGATTGATGAT+GGG - tig0006041:10740-10759 Msa1342790:intron 40.0%
GGATGTGCTTATGAGAATTG+AGG - tig0006041:10807-10826 Msa1342790:exon 40.0%
GAGTTGGAGAGAAATTGTGA+AGG - tig0006041:10888-10907 Msa1342790:CDS 40.0%
! AGCTCAGAGTAGTTTGTGAT+TGG - tig0006041:11057-11076 Msa1342790:CDS 40.0%
GTTTGATGTCATTCTCACGT+TGG - tig0006041:11223-11242 Msa1342790:CDS 40.0%
TTGTTATCTTGGTTGTTGCG+TGG - tig0006041:11304-11323 Msa1342790:intron 40.0%
GTTAAGAATTCACCGCATCA+CGG + tig0006041:11363-11382 Msa1342790:intergenic 40.0%
CACTCTATTTGAATGAGGTG+TGG + tig0006041:11386-11405 Msa1342790:intergenic 40.0%
GAGAGAGCAAGAATGATTGT+TGG - tig0006041:11413-11432 Msa1342790:intron 40.0%
!! GCAAGAATGATTGTTGGCTT+TGG - tig0006041:11419-11438 Msa1342790:intron 40.0%
GAAAGAGCAAGAATGTTTCC+TGG + tig0006041:11465-11484 Msa1342790:intergenic 40.0%
TCACTAACTCTTGTTGAGTG+AGG - tig0006041:11483-11502 Msa1342790:intron 40.0%
TAACTCTTGTTGAGTGAGGT+TGG - tig0006041:11487-11506 Msa1342790:intron 40.0%
TGTTGAGCAGGTATGATTGA+GGG + tig0006041:11663-11682 Msa1342790:intergenic 40.0%
TTGTTGAGCAGGTATGATTG+AGG + tig0006041:11664-11683 Msa1342790:intergenic 40.0%
ATTCGATGCTACTCTTGCAT+TGG + tig0006041:11714-11733 Msa1342790:intergenic 40.0%
! ACTAGCTTCCTTGTGAATAG+TGG - tig0006041:11897-11916 Msa1342790:intron 40.0%
TTCCTTGTGAATAGTGGCAT+TGG - tig0006041:11903-11922 Msa1342790:intron 40.0%
!! TGAATAGTGGCATTGGTGTA+AGG - tig0006041:11910-11929 Msa1342790:intron 40.0%
ATATTCTGTGACACATGGGT+TGG - tig0006041:12352-12371 Msa1342790:intron 40.0%
ATACCTCAACTTCCCAACAT+AGG + tig0006041:12597-12616 Msa1342790:intergenic 40.0%
AAAGTGATTTCAGACCCAGA+AGG + tig0006041:12662-12681 Msa1342790:intergenic 40.0%
!! CTGGGTCTGAAATCACTTTT+TGG - tig0006041:12663-12682 Msa1342790:intron 40.0%
TCATATGAGACATGCACGAT+GGG + tig0006041:12836-12855 Msa1342790:intergenic 40.0%
ATCATATGAGACATGCACGA+TGG + tig0006041:12837-12856 Msa1342790:intergenic 40.0%
!! ATCTGAATGTTTTGGGCTCT+AGG - tig0006041:12855-12874 Msa1342790:intron 40.0%
CACTTGACGTATCTCTCTTT+AGG - tig0006041:12890-12909 Msa1342790:intron 40.0%
CCAACTCTTGAAAGGAAAGT+AGG + tig0006041:12998-13017 Msa1342790:intergenic 40.0%
CCTACTTTCCTTTCAAGAGT+TGG - tig0006041:12995-13014 Msa1342790:intron 40.0%
TGAAGAAATTGAGTCTGCGT+CGG + tig0006041:13157-13176 Msa1342790:intergenic 40.0%
!! TTATCAAAGGTGCTGCTGAT+TGG + tig0006041:13246-13265 Msa1342790:intergenic 40.0%
! GGAGCTGGTGTTAAAAAACA+AGG - tig0006041:13279-13298 Msa1342790:intron 40.0%
TAAAAAACAAGGCTCCTAGG+TGG - tig0006041:13290-13309 Msa1342790:intron 40.0%
TGAAGTTCAAACACCAGCAT+TGG + tig0006041:13327-13346 Msa1342790:intergenic 40.0%
TGCTGGTGTTTGAACTTCAA+TGG - tig0006041:13328-13347 Msa1342790:intron 40.0%
CTGGTTGCTTCTCCTAAAAA+TGG - tig0006041:13385-13404 Msa1342790:intron 40.0%
! CTGCAGAATGACATTTTCCT+GGG + tig0006041:13425-13444 Msa1342790:intergenic 40.0%
! ACTGCAGAATGACATTTTCC+TGG + tig0006041:13426-13445 Msa1342790:intergenic 40.0%
GATTGGATACTGGTAATCCA+TGG + tig0006041:13476-13495 Msa1342790:intergenic 40.0%
AATGCTTCAAAGGCAGAGAT+TGG + tig0006041:13493-13512 Msa1342790:intergenic 40.0%
CAATCACTCACAAGCAATCT+TGG + tig0006041:13542-13561 Msa1342790:intergenic 40.0%
!!! AGTTGCTGATTTTACTTGGC+AGG - tig0006041:13671-13690 Msa1342790:CDS 40.0%
!! TTTACTTGGCAGGTTTTAGC+TGG - tig0006041:13681-13700 Msa1342790:CDS 40.0%
!!! TTACTTGGCAGGTTTTAGCT+GGG - tig0006041:13682-13701 Msa1342790:CDS 40.0%
CAGTATTGCAGGTCTGATAT+AGG - tig0006041:13720-13739 Msa1342790:CDS 40.0%
ACAACGACCTTAGATGCAAT+TGG - tig0006041:13925-13944 Msa1342790:five_prime_UTR 40.0%
AGCTATCAAACAGACACAAC+TGG + tig0006041:13963-13982 Msa1342790:intergenic 40.0%
ATGTATGTACTTGCCTGCTT+AGG - tig0006041:13996-14015 Msa1342790:five_prime_UTR 40.0%
TGTATGTACTTGCCTGCTTA+GGG - tig0006041:13997-14016 Msa1342790:five_prime_UTR 40.0%
ACGGTAAAGGGTAGAGAAGA+AGG + tig0006041:10246-10265 Msa0152760:intergenic 45.0%
! TTGAGTTGTTGCAGAGAGTG+CGG + tig0006041:10302-10321 Msa0152760:intergenic 45.0%
ATTGAGGAATTGGGTGGAGT+TGG - tig0006041:10595-10614 Msa1342790:three_prime_UTR 45.0%
! GGTGCTTTGGTGATTGATGA+TGG - tig0006041:10739-10758 Msa1342790:intron 45.0%
! ATGGGTTGAGTCAGAGTTGT+TGG - tig0006041:10758-10777 Msa1342790:intron 45.0%
! TGGGTTGAGTCAGAGTTGTT+GGG - tig0006041:10759-10778 Msa1342790:intron 45.0%
ACATCCCTCAAAAGCTCATG+GGG + tig0006041:10793-10812 Msa1342790:intergenic 45.0%
CACATCCCTCAAAAGCTCAT+GGG + tig0006041:10794-10813 Msa1342790:intergenic 45.0%
!! AACTTGCTGGACAATTGAGG+AGG + tig0006041:10925-10944 Msa1342790:intergenic 45.0%
!! GTCAACTTGCTGGACAATTG+AGG + tig0006041:10928-10947 Msa1342790:intergenic 45.0%
TTGTTGAGCAGGAATGGTTG+AGG - tig0006041:11275-11294 Msa1342790:intron 45.0%
!! TGAGGAGTGGGTTGTTATCT+TGG - tig0006041:11293-11312 Msa1342790:intron 45.0%
!! TTGTTGAGTGAGGTTGGCTT+TGG - tig0006041:11493-11512 Msa1342790:intron 45.0%
TCTTTGAGTGAGGTGTGAGT+TGG - tig0006041:11597-11616 Msa1342790:CDS 45.0%
CTTTGAGTGAGGTGTGAGTT+GGG - tig0006041:11598-11617 Msa1342790:CDS 45.0%
!! CTGTTACTTTGGTTGTTGCG+TGG + tig0006041:11635-11654 Msa1342790:intergenic 45.0%
GTTGAGCAGGTATGATTGAG+GGG + tig0006041:11662-11681 Msa1342790:intergenic 45.0%
CACCAATGCCACTATTCACA+AGG + tig0006041:11908-11927 Msa1342790:intergenic 45.0%
TTTGCAGCCTCAACTGATGA+CGG - tig0006041:12476-12495 Msa1342790:intron 45.0%
AGAAGGAGTAGCACCTATGT+TGG - tig0006041:12581-12600 Msa1342790:intron 45.0%
GAAGGAGTAGCACCTATGTT+GGG - tig0006041:12582-12601 Msa1342790:intron 45.0%
TTTCAGACCCAGAAGGCAAT+AGG + tig0006041:12655-12674 Msa1342790:intergenic 45.0%
GATGCACACCCTCCAATTTA+TGG - tig0006041:12734-12753 Msa1342790:intron 45.0%
TAGTTTCCTGCAGGAACTCT+TGG + tig0006041:12812-12831 Msa1342790:intergenic 45.0%
GCAAAGAGAATATCGTGGTC+TGG - tig0006041:12912-12931 Msa1342790:intron 45.0%
AAAATGTTAACAGGGGCCCT+AGG - tig0006041:13071-13090 Msa1342790:intron 45.0%
AAGAAATTGAGTCTGCGTCG+GGG + tig0006041:13155-13174 Msa1342790:intergenic 45.0%
GAAGAAATTGAGTCTGCGTC+GGG + tig0006041:13156-13175 Msa1342790:intergenic 45.0%
GATCTGAAGAACGGGATAGA+TGG + tig0006041:13199-13218 Msa1342790:intergenic 45.0%
TGATTGGAGATTCTCTGAGC+GGG + tig0006041:13230-13249 Msa1342790:intergenic 45.0%
CTGATTGGAGATTCTCTGAG+CGG + tig0006041:13231-13250 Msa1342790:intergenic 45.0%
! AAGTCAAAATGATGGGGAGC+TGG - tig0006041:13264-13283 Msa1342790:intron 45.0%
!! TTTTAGGAGAAGCAACCAGC+TGG + tig0006041:13384-13403 Msa1342790:intergenic 45.0%
GCAGTTTGGAAAAGTCGGAA+AGG - tig0006041:13441-13460 Msa1342790:CDS 45.0%
CAAAGGCAGAGATTGGATAC+TGG + tig0006041:13486-13505 Msa1342790:intergenic 45.0%
!! TCTTGGTGTCAAAGCTGCTA+AGG + tig0006041:13525-13544 Msa1342790:intergenic 45.0%
GATTGCTTGTGAGTGATTGC+TGG - tig0006041:13543-13562 Msa1342790:CDS 45.0%
TTGTGAGTGATTGCTGGAAC+AGG - tig0006041:13549-13568 Msa1342790:CDS 45.0%
!!! AGGTTTTAGCTGGGTGGAAT+TGG - tig0006041:13691-13710 Msa1342790:CDS 45.0%
TCAGACCTGCAATACTGTGA+GGG + tig0006041:13717-13736 Msa1342790:intergenic 45.0%
ATCAGACCTGCAATACTGTG+AGG + tig0006041:13718-13737 Msa1342790:intergenic 45.0%
GCTTTCTGTTTAGTCCAACC+CGG - tig0006041:13753-13772 Msa1342790:five_prime_UTR 45.0%
TAAAAGGGAGAAGGGGGAAA+GGG + tig0006041:13793-13812 Msa1342790:intergenic 45.0%
ATAAAAGGGAGAAGGGGGAA+AGG + tig0006041:13794-13813 Msa1342790:intergenic 45.0%
GGTCGTTGTCTACAATCTCA+TGG + tig0006041:13914-13933 Msa1342790:intergenic 45.0%
! TGAGTTGTTGCAGAGAGTGC+GGG + tig0006041:10301-10320 Msa0152760:intergenic 50.0%
! ACATGCCCCATGAGCTTTTG+AGG - tig0006041:10785-10804 Msa1342790:intron 50.0%
! CATGCCCCATGAGCTTTTGA+GGG - tig0006041:10786-10805 Msa1342790:intron 50.0%
GCACATCCCTCAAAAGCTCA+TGG + tig0006041:10795-10814 Msa1342790:intergenic 50.0%
CAGATGATACTTGGCCGACT+CGG - tig0006041:10833-10852 Msa1342790:CDS 50.0%
GCGACAACATTCTTCCGAGT+CGG + tig0006041:10850-10869 Msa1342790:intergenic 50.0%
TCTCCAACTCCTGCAAACAC+CGG + tig0006041:10878-10897 Msa1342790:intergenic 50.0%
GACAGGGAATGTCAACTTGC+TGG + tig0006041:10938-10957 Msa1342790:intergenic 50.0%
ATTCCCTGTCTCCTTGAAGC+AGG - tig0006041:10948-10967 Msa1342790:CDS 50.0%
CTACCTGCTTCAAGGAGACA+GGG + tig0006041:10954-10973 Msa1342790:intergenic 50.0%
GACAAGTGCTACCTGCTTCA+AGG + tig0006041:10962-10981 Msa1342790:intergenic 50.0%
AGCAGGAATGGTTGAGGAGT+GGG - tig0006041:11281-11300 Msa1342790:intron 50.0%
ATCTTGGTTGTTGCGTGGCT+CGG - tig0006041:11309-11328 Msa1342790:intron 50.0%
TGAATTCCCAACCCACACCT+TGG - tig0006041:11332-11351 Msa1342790:intron 50.0%
GAACAACCAAGGTGTGGGTT+GGG + tig0006041:11341-11360 Msa1342790:intergenic 50.0%
TCACGGAACAACCAAGGTGT+GGG + tig0006041:11346-11365 Msa1342790:intergenic 50.0%
ATCACGGAACAACCAAGGTG+TGG + tig0006041:11347-11366 Msa1342790:intergenic 50.0%
ACCTTGGTTGTTCCGTGATG+CGG - tig0006041:11348-11367 Msa1342790:intron 50.0%
ACTTTGGTTGTTGCGTGGTG+CGG + tig0006041:11630-11649 Msa1342790:intergenic 50.0%
AGCAGGTATGATTGAGGGGT+GGG + tig0006041:11658-11677 Msa1342790:intergenic 50.0%
CACTGAATAAGAGAGCCCCT+TGG + tig0006041:12223-12242 Msa1342790:intergenic 50.0%
!! TGTGACACATGGGTTGGACT+GGG - tig0006041:12358-12377 Msa1342790:intron 50.0%
GAACTTGCCGTCATCAGTTG+AGG + tig0006041:12486-12505 Msa1342790:intergenic 50.0%
GCACCTATGTTGGGAAGTTG+AGG - tig0006041:12591-12610 Msa1342790:intron 50.0%
TTGCTTGAGACTTAGCCTGG+TGG + tig0006041:12783-12802 Msa1342790:intergenic 50.0%
CACTTGCTTGAGACTTAGCC+TGG + tig0006041:12786-12805 Msa1342790:intergenic 50.0%
ACGATGGGATAGTTTCCTGC+AGG + tig0006041:12821-12840 Msa1342790:intergenic 50.0%
TGGAGTTGTTCATGCCACCT+AGG + tig0006041:13307-13326 Msa1342790:intergenic 50.0%
GGCATGAACAACTCCAATGC+TGG - tig0006041:13311-13330 Msa1342790:intron 50.0%
CGGAAAGGATGTGTTCACCA+TGG - tig0006041:13456-13475 Msa1342790:CDS 50.0%
ATTGGCCCTCACAGTATTGC+AGG - tig0006041:13709-13728 Msa1342790:CDS 50.0%
AAGGGGAGAGACTTAGAAGC+CGG + tig0006041:13775-13794 Msa1342790:intergenic 50.0%
AAAAGGGAGAAGGGGGAAAG+GGG + tig0006041:13792-13811 Msa1342790:intergenic 50.0%
GGAATGTAGCAACCCTAAGC+AGG + tig0006041:14012-14031 Msa1342790:intergenic 50.0%
! GAGTTGTTGCAGAGAGTGCG+GGG + tig0006041:10300-10319 Msa0152760:intergenic 55.0%
AAGAATGTTGTCGCGTGCGC+CGG - tig0006041:10856-10875 Msa1342790:CDS 55.0%
GCTACCTGCTTCAAGGAGAC+AGG + tig0006041:10955-10974 Msa1342790:intergenic 55.0%
GAGCAGGAATGGTTGAGGAG+TGG - tig0006041:11280-11299 Msa1342790:intron 55.0%
GGAACAACCAAGGTGTGGGT+TGG + tig0006041:11342-11361 Msa1342790:intergenic 55.0%
ACCGCATCACGGAACAACCA+AGG + tig0006041:11352-11371 Msa1342790:intergenic 55.0%
!! TGAGGGGTGGGCTGTTACTT+TGG + tig0006041:11646-11665 Msa1342790:intergenic 55.0%
GAGCAGGTATGATTGAGGGG+TGG + tig0006041:11659-11678 Msa1342790:intergenic 55.0%
TCATCATGCAGCCTGGTCCA+AGG - tig0006041:12203-12222 Msa1342790:intron 55.0%
CATCATGCAGCCTGGTCCAA+GGG - tig0006041:12204-12223 Msa1342790:intron 55.0%
ATCATGCAGCCTGGTCCAAG+GGG - tig0006041:12205-12224 Msa1342790:intron 55.0%
ATAAGAGAGCCCCTTGGACC+AGG + tig0006041:12217-12236 Msa1342790:intergenic 55.0%
ATCTCTGGCAGCACTCACCT+TGG + tig0006041:12300-12319 Msa1342790:intergenic 55.0%
!! CTGTGACACATGGGTTGGAC+TGG - tig0006041:12357-12376 Msa1342790:intron 55.0%
GACACTTGCGTGCAGCAAGA+AGG + tig0006041:12508-12527 Msa1342790:intergenic 55.0%
! TGAGACTTAGCCTGGTGGTG+CGG + tig0006041:12778-12797 Msa1342790:intergenic 55.0%
GTGTCTCCAAGAGTTCCTGC+AGG - tig0006041:12803-12822 Msa1342790:intron 55.0%
TTCAACAGCTGAGGCAGGGA+TGG + tig0006041:13119-13138 Msa1342790:intergenic 55.0%
CAGGTTCAACAGCTGAGGCA+GGG + tig0006041:13123-13142 Msa1342790:intergenic 55.0%
ACCTCCAGGTTCAACAGCTG+AGG + tig0006041:13128-13147 Msa1342790:intergenic 55.0%
AGCTGTTGAACCTGGAGGTG+TGG - tig0006041:13129-13148 Msa1342790:intron 55.0%
!!! CTTGGCAGGTTTTAGCTGGG+TGG - tig0006041:13685-13704 Msa1342790:CDS 55.0%
GAGAGACTTAGAAGCCGGGT+TGG + tig0006041:13770-13789 Msa1342790:intergenic 55.0%
AGGGGAGAGACTTAGAAGCC+GGG + tig0006041:13774-13793 Msa1342790:intergenic 55.0%
GTGCGGGGAAAGGAGAGAAG+AGG + tig0006041:10285-10304 Msa0152760:intergenic 60.0%
! GTTGCAGAGAGTGCGGGGAA+AGG + tig0006041:10295-10314 Msa0152760:intergenic 60.0%
TTGCAAAGTCCCGCACCACC+AGG - tig0006041:12765-12784 Msa1342790:intron 60.0%
! GAGACTTAGCCTGGTGGTGC+GGG + tig0006041:12777-12796 Msa1342790:intergenic 60.0%
CCAGGTTCAACAGCTGAGGC+AGG + tig0006041:13124-13143 Msa1342790:intergenic 60.0%
CCTGCCTCAGCTGTTGAACC+TGG - tig0006041:13121-13140 Msa1342790:intron 60.0%
GCCTCAGCTGTTGAACCTGG+AGG - tig0006041:13124-13143 Msa1342790:intron 60.0%
! TGGAGTTTCTGAGGAGGCCC+AGG - tig0006041:13405-13424 Msa1342790:CDS 60.0%
! GCGCCGGTGTTTGCAGGAGT+TGG - tig0006041:10872-10891 Msa1342790:CDS 65.0%
! TCGCGTGCGCCGGTGTTTGC+AGG - tig0006041:10866-10885 Msa1342790:CDS 70.0%
TGCGTCGGGGCCACACCTCC+AGG + tig0006041:13142-13161 Msa1342790:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0006041 gene 10230 14143 10230 ID=Msa1342790;Name=Msa1342790
tig0006041 mRNA 10230 14143 10230 ID=Msa1342790-mRNA-1;Parent=Msa1342790;Name=Msa1342790-mRNA-1;_AED=0.07;_eAED=0.07;_QI=401|1|1|1|0.8|0.83|6|463|402
tig0006041 exon 10230 10680 10230 ID=Msa1342790-mRNA-1:exon:3793;Parent=Msa1342790-mRNA-1
tig0006041 exon 10803 11289 10803 ID=Msa1342790-mRNA-1:exon:3792;Parent=Msa1342790-mRNA-1
tig0006041 exon 11497 11673 11497 ID=Msa1342790-mRNA-1:exon:3791;Parent=Msa1342790-mRNA-1
tig0006041 exon 11761 11890 11761 ID=Msa1342790-mRNA-1:exon:3790;Parent=Msa1342790-mRNA-1
tig0006041 exon 12072 12159 12072 ID=Msa1342790-mRNA-1:exon:3789;Parent=Msa1342790-mRNA-1
tig0006041 exon 13404 14143 13404 ID=Msa1342790-mRNA-1:exon:3788;Parent=Msa1342790-mRNA-1
tig0006041 five_prime_UTR 13743 14143 13743 ID=Msa1342790-mRNA-1:five_prime_utr;Parent=Msa1342790-mRNA-1
tig0006041 CDS 13404 13742 13404 ID=Msa1342790-mRNA-1:cds;Parent=Msa1342790-mRNA-1
tig0006041 CDS 12072 12159 12072 ID=Msa1342790-mRNA-1:cds;Parent=Msa1342790-mRNA-1
tig0006041 CDS 11761 11890 11761 ID=Msa1342790-mRNA-1:cds;Parent=Msa1342790-mRNA-1
tig0006041 CDS 11497 11673 11497 ID=Msa1342790-mRNA-1:cds;Parent=Msa1342790-mRNA-1
tig0006041 CDS 10815 11289 10815 ID=Msa1342790-mRNA-1:cds;Parent=Msa1342790-mRNA-1
tig0006041 three_prime_UTR 10803 10814 10803 ID=Msa1342790-mRNA-1:three_prime_utr;Parent=Msa1342790-mRNA-1
tig0006041 three_prime_UTR 10230 10680 10230 ID=Msa1342790-mRNA-1:three_prime_utr;Parent=Msa1342790-mRNA-1
Gene Sequence

>Msa1342790

ATGTCATTTAGGAGTATGATCATGGATAGGAAGGGATTTGACGTGAAATTTGGGTATGGTATGAGATCAAGATCACAGTCACACTGTGATGTTAATGTTATTGCCAATGGTGCTTTGGTGATTGATGATGGGTTGAGTCAGAGTTGTTGGGCTAACATGCCCCATGAGCTTTTGAGGGATGTGCTTATGAGAATTGAGGTTTCAGATGATACTTGGCCGACTCGGAAGAATGTTGTCGCGTGCGCCGGTGTTTGCAGGAGTTGGAGAGAAATTGTGAAGGAACTTGTTAAGCCTCCTCAATTGTCCAGCAAGTTGACATTCCCTGTCTCCTTGAAGCAGCCTGGTCCAAGGGGCTCTCTTATTCAGTGCTATATTAAACGAAATCGCGGCGACCAAATTTATTATCTTTTTCTCAGTTTGAACCAAGCCTCAACTGATGACGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTGCAACCCACACTGACTATATCATTTCTCTAAATTTGGATGATGTATCAAGAAGGAGTAGCACCTATGTTGGGAAGTTGAGATCAAACTTTCTGGGCACCAAATTTACAGTGTATGATGCACACCCTCCAATTTATGGAGACAGATTTGCAAAGTCCCGCACCACCAGGCTAAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCAGGAAACTATCCCATCGTGCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCTAGGATTATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCGACGCAGACTCAATTTCTTCATAGCAGAGTTGATACTTCTCCATCTATCCCGTTCTTCAGATCAAAATCAACCCGCTCAGAGAATCTCCAATCAGCAGCACCTTTGATAAGTCAAAATGATGGGGAGCTGGTGTTAAAAAACAAGGCTCCTAGGTGGCATGAACAACTCCAATGCTGGTGTTTGAACTTCAATGGACGTGTGACAGTCGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCTAAAAATGGAGTTTCTGAGGAGGCCCAGGAAAATGTCATTCTGCAGTTTGGAAAAGTCGGAAAGGATGTGTTCACCATGGATTACCAGTATCCAATCTCTGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAGTGA
Protein sequence

>Msa1342790

MSFRSMIMDRKGFDVKFGYGMRSRSQSHCDVNVIANGALVIDDGLSQSCWANMPHELLRDVLMRIEVSDDTWPTRKNVVACAGVCRSWREIVKELVKPPQLSSKLTFPVSLKQPGPRGSLIQCYIKRNRGDQIYYLFLSLNQASTDDGKFLLAARKCRRATHTDYIISLNLDDVSRRSSTYVGKLRSNFLGTKFTVYDAHPPIYGDRFAKSRTTRLSLKQVSPRVPAGNYPIVHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRVDTSPSIPFFRSKSTRSENLQSAAPLISQNDGELVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEEAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE*