AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0175260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175260 MtrunA17_Chr1g0196071 99.005 402 4 0 1 402 1 402 0.0 833
Msa0175260 MtrunA17_Chr2g0286441 68.750 384 117 3 21 402 11 393 0.0 556
Msa0175260 MtrunA17_Chr2g0278511 53.009 432 168 10 1 402 1 427 6.55e-153 439
Msa0175260 MtrunA17_Chr5g0404321 52.482 423 173 7 1 402 1 416 9.34e-145 417
Msa0175260 MtrunA17_Chr1g0201891 50.572 437 175 10 1 402 1 431 6.94e-143 413
Msa0175260 MtrunA17_Chr8g0373001 51.667 420 177 6 1 402 1 412 6.73e-142 410
Msa0175260 MtrunA17_Chr1g0155301 55.153 359 149 6 50 402 70 422 5.91e-133 388
Msa0175260 MtrunA17_Chr2g0315641 50.279 358 145 5 50 402 42 371 3.69e-119 350
Msa0175260 MtrunA17_Chr2g0315651 44.875 361 161 8 50 402 37 367 6.33e-95 288
Msa0175260 MtrunA17_Chr8g0373361 41.487 417 200 17 1 395 11 405 1.20e-82 258
Msa0175260 MtrunA17_Chr8g0373331 34.158 404 197 10 1 393 1 346 3.61e-61 201
Msa0175260 MtrunA17_Chr8g0373341 33.333 399 180 13 1 392 1 320 9.42e-47 162
Msa0175260 MtrunA17_Chr1g0156151 53.521 142 62 1 65 202 66 207 4.83e-45 155
Msa0175260 MtrunA17_Chr8g0373351 35.275 309 121 9 99 394 44 286 1.07e-43 154
Msa0175260 MtrunA17_Chr3g0091401 38.776 98 54 1 92 189 8 99 5.67e-14 67.8
Msa0175260 MtrunA17_Chr2g0334041 50.000 62 24 1 340 401 305 359 1.71e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175260 AT2G47900.2 72.155 413 97 6 1 402 1 406 0.0 588
Msa0175260 AT2G47900.1 72.155 413 97 6 1 402 1 406 0.0 588
Msa0175260 AT2G47900.3 71.981 414 97 6 1 402 1 407 0.0 587
Msa0175260 AT3G06380.1 56.049 405 150 9 1 402 1 380 2.52e-147 423
Msa0175260 AT5G18680.1 58.470 366 124 8 50 402 39 389 6.69e-147 422
Msa0175260 AT1G43640.1 48.747 439 178 11 1 402 1 429 1.77e-140 407
Msa0175260 AT1G76900.2 47.380 458 182 9 1 402 1 455 5.74e-138 402
Msa0175260 AT1G76900.1 47.380 458 182 9 1 402 1 455 5.74e-138 402
Msa0175260 AT1G76900.3 47.380 458 182 9 1 402 1 455 5.74e-138 402
Msa0175260 AT1G25280.1 48.438 448 182 7 1 402 1 445 3.01e-136 397
Msa0175260 AT2G18280.2 51.238 404 184 6 1 402 1 393 1.07e-134 391
Msa0175260 AT2G18280.1 51.238 404 184 6 1 402 1 393 1.07e-134 391
Msa0175260 AT1G47270.3 53.117 369 149 5 42 402 36 388 7.15e-133 387
Msa0175260 AT1G47270.1 53.117 369 149 5 42 402 61 413 7.61e-133 387
Msa0175260 AT1G47270.2 53.117 369 149 5 42 402 60 412 1.03e-132 387
Msa0175260 AT1G43640.2 51.359 368 147 7 62 402 1 363 7.03e-130 378
Msa0175260 AT5G18680.2 58.497 306 100 7 109 402 7 297 9.76e-116 340
Msa0175260 AT3G06380.2 59.589 292 108 5 113 402 5 288 3.64e-113 333
Msa0175260 AT1G53320.1 49.036 363 152 6 48 402 42 379 6.15e-113 335
Msa0175260 AT1G25280.3 50.741 270 94 5 169 402 1 267 6.15e-83 255
Msa0175260 AT1G25280.2 50.741 270 94 5 169 402 1 267 6.15e-83 255
Msa0175260 AT1G61940.2 70.930 86 25 0 53 138 1 86 5.08e-40 144
Msa0175260 AT1G61940.1 72.131 61 17 0 53 113 1 61 1.43e-24 101
Msa0175260 AT1G61940.1 48.000 100 28 5 248 346 102 178 1.21e-12 67.8

Find 161 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATATCATTTCTCTAAATT+TGG 0.095614 1_4:-61150320 Msa0175260:CDS
GATGCACACCCTCCAATTTA+TGG 0.187148 1_4:-61150133 Msa0175260:CDS
GCAAATCTGTCTCCATAAAT+TGG 0.193737 1_4:+61150121 None:intergenic
TCGCTTATATACAAAATAAA+AGG 0.198604 1_4:+61149061 None:intergenic
TGGTAACAGATCAAACTTTC+TGG 0.205085 1_4:-61150176 Msa0175260:intron
AATTGGGTGGAGTTGGAATT+AGG 0.226753 1_4:-61152263 Msa0175260:five_prime_UTR
ACTTTGTACCAATTGAATAT+TGG 0.258825 1_4:+61148822 None:intergenic
CTCATATGATCTGAATGTTT+TGG 0.268134 1_4:-61150020 Msa0175260:CDS
TTAGGTTAACGATGTCATTT+AGG 0.284142 1_4:-61152245 Msa0175260:exon
TCGCGTGCGCCGGTGTTTGC+AGG 0.297366 1_4:-61151999 Msa0175260:CDS
ATGTATGTACTTGCCTGCTT+AGG 0.333120 1_4:-61148871 Msa0175260:three_prime_UTR
AAGGGATTTGACGTGAAATT+CGG 0.342997 1_4:-61152204 Msa0175260:CDS
GAAAATGTCATTCTGCAGTT+TGG 0.348950 1_4:-61149440 Msa0175260:CDS
ATTTAGTAGAATTGAGGAAT+TGG 0.350714 1_4:-61152280 Msa0175260:five_prime_UTR
TCACAAACCAATTGCATCTA+AGG 0.355657 1_4:+61148935 None:intergenic
TGCATCATACACTGTAAATT+TGG 0.359668 1_4:+61150150 None:intergenic
ATTGAGGAATTGGGTGGAGT+TGG 0.377499 1_4:-61152270 Msa0175260:five_prime_UTR
TTTAGTAGAATTGAGGAATT+GGG 0.386629 1_4:-61152279 Msa0175260:five_prime_UTR
CAATCACTCACAAGCAATCT+TGG 0.389643 1_4:+61149328 None:intergenic
ATTGGCCCTCACAGTATTGC+AGG 0.390301 1_4:-61149158 Msa0175260:three_prime_UTR
CAGCTATGGTTTAGAAGAAT+CGG 0.393566 1_4:-61152311 Msa0175260:five_prime_UTR
TGTGTCTGTTTGATAGCTTT+TGG 0.398409 1_4:-61148902 Msa0175260:three_prime_UTR
TAGGATTATGCAATGTGTTA+TGG 0.402541 1_4:-61149777 Msa0175260:CDS
AAGATTATCCAATATTCAAT+TGG 0.403254 1_4:-61148830 Msa0175260:three_prime_UTR
CAGTATTGCAGGTCTGATAT+AGG 0.405155 1_4:-61149147 Msa0175260:three_prime_UTR
CCTGCCTCAGCTGTTGAACC+TGG 0.411820 1_4:-61149746 Msa0175260:CDS
GACAGGGAATGTCAACTTGC+TGG 0.412110 1_4:+61151930 None:intergenic
AGGGATTTGACGTGAAATTC+GGG 0.417694 1_4:-61152203 Msa0175260:CDS
ATGGGTTGAGTCAGAGTTGT+TGG 0.417839 1_4:-61152107 Msa0175260:CDS
GATCTGAAGAACGGGATAGA+TGG 0.420581 1_4:+61149671 None:intergenic
GACAAGTGCTACCTGCTTCA+AGG 0.422783 1_4:+61151906 None:intergenic
TAGTTTCCTGCAGGAACTCT+TGG 0.422898 1_4:+61150058 None:intergenic
AAAACACAAAATACAACATA+TGG 0.429929 1_4:+61149008 None:intergenic
GATTGCTTGTGAGTGATTGC+TGG 0.433585 1_4:-61149324 Msa0175260:exon
TGCGTCGGGGCCACACCTCC+AGG 0.436166 1_4:+61149728 None:intergenic
TTATCAAAGGTGCTGCTGAT+TGG 0.436264 1_4:+61149624 None:intergenic
GCGCCGGTGTTTGCAGGAGT+TGG 0.436346 1_4:-61151993 Msa0175260:CDS
ACGGTAAAGGGTAGAGAAGA+AGG 0.436424 1_4:+61152618 None:intergenic
ACAACGACCTTAGATGCAAT+TGG 0.442451 1_4:-61148942 Msa0175260:three_prime_UTR
TGTTATTGCCAATGGTGCTT+TGG 0.443517 1_4:-61152139 Msa0175260:CDS
GAAGAAATTGAGTCTGCGTC+GGG 0.444561 1_4:+61149714 None:intergenic
GGTAACAGATCAAACTTTCT+GGG 0.446463 1_4:-61150175 Msa0175260:intron
TTGAGGTTTCAGATGATACT+TGG 0.450054 1_4:-61152041 Msa0175260:CDS
AGCTATCAAACAGACACAAC+TGG 0.452900 1_4:+61148907 None:intergenic
ATAACACATTGCATAATCCT+AGG 0.454350 1_4:+61149779 None:intergenic
GGTGCTTTGGTGATTGATGA+TGG 0.458578 1_4:-61152126 Msa0175260:CDS
AATGCTTCAAAGGCAGAGAT+TGG 0.458777 1_4:+61149377 None:intergenic
CTGTTGTTCAATCACTCTGA+TGG 0.465449 1_4:-61152529 Msa0175260:five_prime_UTR
TGCTGGTGTTTGAACTTCAA+TGG 0.466360 1_4:-61149539 Msa0175260:CDS
GCTACCTGCTTCAAGGAGAC+AGG 0.468323 1_4:+61151913 None:intergenic
TGAGTTGTTGCAGAGAGTGC+GGG 0.471120 1_4:+61152563 None:intergenic
GAGACTTAGCCTGGTGGTGC+GGG 0.471988 1_4:+61150093 None:intergenic
CCAGGTTCAACAGCTGAGGC+AGG 0.472095 1_4:+61149746 None:intergenic
AATATTGGATAATCTTTGAA+AGG 0.473129 1_4:+61148837 None:intergenic
ATACAAAATAAAAGGGAGAA+GGG 0.473379 1_4:+61149069 None:intergenic
TGTATGTACTTGCCTGCTTA+GGG 0.475392 1_4:-61148870 Msa0175260:three_prime_UTR
CATCATGCAGCCTGGTCCAA+GGG 0.476151 1_4:-61150663 Msa0175260:intron
CGAATAACACAACAAAGACT+TGG 0.477158 1_4:+61148793 None:intergenic
TACAAAATAAAAGGGAGAAG+GGG 0.477609 1_4:+61149070 None:intergenic
GAAGGAGTAGCACCTATGTT+GGG 0.479960 1_4:-61150285 Msa0175260:CDS
GAGTATGATCATGGATAGGA+AGG 0.482584 1_4:-61152223 Msa0175260:CDS
TTGTGAGTGATTGCTGGAAC+AGG 0.483302 1_4:-61149318 Msa0175260:intron
TGAAGTTCAAACACCAGCAT+TGG 0.484021 1_4:+61149543 None:intergenic
CAAAGGCAGAGATTGGATAC+TGG 0.485873 1_4:+61149384 None:intergenic
AAGTTAATTTAGTAGAATTG+AGG 0.486220 1_4:-61152286 Msa0175260:five_prime_UTR
ATCAATCACCAAAGCACCAT+TGG 0.486769 1_4:+61152131 None:intergenic
GTCATTTAGGAGTATGATCA+TGG 0.487718 1_4:-61152232 Msa0175260:CDS
CACTTGCTTGAGACTTAGCC+TGG 0.491047 1_4:+61150084 None:intergenic
TGGAGTTTCTGAGGAGGCCC+AGG 0.493680 1_4:-61149462 Msa0175260:CDS
CGCTTATATACAAAATAAAA+GGG 0.493916 1_4:+61149062 None:intergenic
AAGAATGTTGTCGCGTGCGC+CGG 0.493919 1_4:-61152009 Msa0175260:CDS
AGCTGTTGAACCTGGAGGTG+TGG 0.496026 1_4:-61149738 Msa0175260:CDS
ATGAGAGAGCCCCTTGGACC+AGG 0.496405 1_4:+61150653 None:intergenic
TGATTGAACAACAGAAATTG+AGG 0.506055 1_4:+61152538 None:intergenic
TAAAGGGTAGAGAAGAAGGT+TGG 0.512987 1_4:+61152622 None:intergenic
TCAATCACTCTGATGGAAGA+AGG 0.514260 1_4:-61152522 Msa0175260:five_prime_UTR
GTGCTTTGGTGATTGATGAT+GGG 0.516000 1_4:-61152125 Msa0175260:CDS
TCATCATGCAGCCTGGTCCA+AGG 0.523744 1_4:-61150664 Msa0175260:intron
CTTTGATAAGTCAAAATGAT+GGG 0.523813 1_4:-61149610 Msa0175260:CDS
GGAATGTAGCAACCCTAAGC+AGG 0.528589 1_4:+61148858 None:intergenic
GTTGCAGAGAGTGCGGGGAA+AGG 0.530528 1_4:+61152569 None:intergenic
AGAAGGAGTAGCACCTATGT+TGG 0.530821 1_4:-61150286 Msa0175260:CDS
GCACATCCCTCAAAAGCTCA+TGG 0.537457 1_4:+61152073 None:intergenic
TTGCAAAGTCCCGCACCACC+AGG 0.537675 1_4:-61150102 Msa0175260:CDS
TATACAAAATAAAAGGGAGA+AGG 0.538868 1_4:+61149068 None:intergenic
AGCTATGGTTTAGAAGAATC+GGG 0.539023 1_4:-61152310 Msa0175260:five_prime_UTR
TTCAACAGCTGAGGCAGGGA+TGG 0.540786 1_4:+61149751 None:intergenic
ACAAAATAAAAGGGAGAAGG+GGG 0.542378 1_4:+61149071 None:intergenic
GCTTTCTGTTTAGTCCAACC+CGG 0.543246 1_4:-61149114 Msa0175260:three_prime_UTR
AGTAAAGTGAGAAACGGTAA+AGG 0.543490 1_4:+61152605 None:intergenic
CTGTGAGGGCCAATTCCACC+TGG 0.544338 1_4:+61149167 None:intergenic
ATTCCCTGTCTCCTTGAAGC+AGG 0.548762 1_4:-61151917 Msa0175260:intron
CAGATGATACTTGGCCGACT+CGG 0.549792 1_4:-61152032 Msa0175260:CDS
CACATCCCTCAAAAGCTCAT+GGG 0.551644 1_4:+61152074 None:intergenic
GCATATTGCAAATGCTTCAA+AGG 0.553851 1_4:+61149367 None:intergenic
CCTTTGATAAGTCAAAATGA+TGG 0.555873 1_4:-61149611 Msa0175260:CDS
AAAATGTTAACAGGGGCCCT+AGG 0.556228 1_4:-61149796 Msa0175260:intron
TGGGTTGAGTCAGAGTTGTT+GGG 0.556484 1_4:-61152106 Msa0175260:CDS
AAGGGGAGAGACTTAGAAGC+CGG 0.556618 1_4:+61149095 None:intergenic
GGATGTGCTTATGAGAATTG+AGG 0.557422 1_4:-61152058 Msa0175260:CDS
ATACCTCAACTTCCCAACAT+AGG 0.558903 1_4:+61150273 None:intergenic
GTCAACTTGCTGGACAATTG+AGG 0.559973 1_4:+61151940 None:intergenic
CACTGAATGAGAGAGCCCCT+TGG 0.561004 1_4:+61150647 None:intergenic
TCTTGGTGTCAAAGCTGCTA+AGG 0.561466 1_4:+61149345 None:intergenic
GAGAAATGATATAGTCAGTG+TGG 0.564360 1_4:+61150329 None:intergenic
GTAAAGTGAGAAACGGTAAA+GGG 0.565184 1_4:+61152606 None:intergenic
AATCTGTCTCCATAAATTGG+AGG 0.567458 1_4:+61150124 None:intergenic
TTTGACGTGAAATTCGGGTA+TGG 0.568681 1_4:-61152198 Msa0175260:CDS
TGATTGGAGATTCTCTGAGC+GGG 0.569183 1_4:+61149640 None:intergenic
GCACCTATGTTGGGAAGTTG+AGG 0.569372 1_4:-61150276 Msa0175260:intron
CAATCACTCTGATGGAAGAA+GGG 0.569385 1_4:-61152521 Msa0175260:five_prime_UTR
AGGCAGAGTAAAGTGAGAAA+CGG 0.569573 1_4:+61152599 None:intergenic
TGCATTATATTTAACAGACA+TGG 0.571593 1_4:-61149032 Msa0175260:three_prime_UTR
TGAAGAAATTGAGTCTGCGT+CGG 0.573052 1_4:+61149713 None:intergenic
GGTCGTTGTCTACAATCTCA+TGG 0.574634 1_4:+61148956 None:intergenic
ATTCTGCAGTTTGGAAAAGT+CGG 0.574704 1_4:-61149431 Msa0175260:CDS
GTGCGGGGAAAGGAGAGAAG+AGG 0.577607 1_4:+61152579 None:intergenic
TCATATGAGACATGCACGAT+GGG 0.577709 1_4:+61150034 None:intergenic
GAGAGACTTAGAAGCCGGGT+TGG 0.578090 1_4:+61149100 None:intergenic
TTGAGTTGTTGCAGAGAGTG+CGG 0.578891 1_4:+61152562 None:intergenic
AAGTCAAAATGATGGGGAGC+TGG 0.581065 1_4:-61149603 Msa0175260:CDS
TGGAGTTGTTCATGCCACCT+AGG 0.583552 1_4:+61149563 None:intergenic
TTTGCAGCCTCAACTGATGA+CGG 0.583581 1_4:-61150391 Msa0175260:intron
GGCATGAACAACTCCAATGC+TGG 0.585250 1_4:-61149556 Msa0175260:CDS
TGAGACTTAGCCTGGTGGTG+CGG 0.585690 1_4:+61150092 None:intergenic
ACGATGGGATAGTTTCCTGC+AGG 0.585969 1_4:+61150049 None:intergenic
GATGTTAATGTTATTGCCAA+TGG 0.594465 1_4:-61152147 Msa0175260:CDS
ATCTGTCTCCATAAATTGGA+GGG 0.597162 1_4:+61150125 None:intergenic
ATTTGGATGATGTGTCAAGA+AGG 0.597180 1_4:-61150303 Msa0175260:CDS
CTACCTGCTTCAAGGAGACA+GGG 0.598753 1_4:+61151914 None:intergenic
AGGGGAGAGACTTAGAAGCC+GGG 0.599238 1_4:+61149096 None:intergenic
GTGTCTCCAAGAGTTCCTGC+AGG 0.601279 1_4:-61150064 Msa0175260:CDS
GACACTTGCGTGCAGCAAGA+AGG 0.601304 1_4:+61150362 None:intergenic
CAGGTTCAACAGCTGAGGCA+GGG 0.604724 1_4:+61149747 None:intergenic
GAATAACACAACAAAGACTT+GGG 0.605838 1_4:+61148794 None:intergenic
AGTAGAATTGAGGAATTGGG+TGG 0.605987 1_4:-61152276 Msa0175260:five_prime_UTR
GAACTTGCCGTCATCAGTTG+AGG 0.606120 1_4:+61150384 None:intergenic
GATTGGATACTGGTAATCCA+TGG 0.610280 1_4:+61149394 None:intergenic
AGAAATGATATAGTCAGTGT+GGG 0.610923 1_4:+61150330 None:intergenic
GCCTCAGCTGTTGAACCTGG+AGG 0.611858 1_4:-61149743 Msa0175260:CDS
TTAGGAGTATGATCATGGAT+AGG 0.615050 1_4:-61152227 Msa0175260:CDS
AACTTGCTGGACAATTGAGG+AGG 0.616449 1_4:+61151943 None:intergenic
TCAGACCTGCAATACTGTGA+GGG 0.617106 1_4:+61149153 None:intergenic
TAACACATTGCATAATCCTA+GGG 0.617287 1_4:+61149780 None:intergenic
ATCATGCAGCCTGGTCCAAG+GGG 0.619178 1_4:-61150662 Msa0175260:intron
ACCTCCAGGTTCAACAGCTG+AGG 0.623409 1_4:+61149742 None:intergenic
CTGATTGGAGATTCTCTGAG+CGG 0.624740 1_4:+61149639 None:intergenic
ATCATATGAGACATGCACGA+TGG 0.626290 1_4:+61150033 None:intergenic
ACATCCCTCAAAAGCTCATG+GGG 0.631071 1_4:+61152075 None:intergenic
AGTATGATCATGGATAGGAA+GGG 0.631347 1_4:-61152222 Msa0175260:CDS
GCAGTTTGGAAAAGTCGGAA+AGG 0.632984 1_4:-61149426 Msa0175260:CDS
GAGTTGTTGCAGAGAGTGCG+GGG 0.638794 1_4:+61152564 None:intergenic
CGGAAAGGATGTGTTCACCA+TGG 0.642135 1_4:-61149411 Msa0175260:CDS
TGCTATATTAAACGAAATCG+CGG 0.643232 1_4:-61150626 Msa0175260:CDS
GCGACAACATTCTTCCGAGT+CGG 0.645949 1_4:+61152018 None:intergenic
TTTGATAAGTCAAAATGATG+GGG 0.648482 1_4:-61149609 Msa0175260:CDS
GAGTTGGAGAGAAATTGTGA+AGG 0.664353 1_4:-61151977 Msa0175260:CDS
TCTCCAACTCCTGCAAACAC+CGG 0.665494 1_4:+61151990 None:intergenic
ATCAGACCTGCAATACTGTG+AGG 0.677842 1_4:+61149152 None:intergenic
AAGAAATTGAGTCTGCGTCG+GGG 0.697436 1_4:+61149715 None:intergenic
TTGCTTGAGACTTAGCCTGG+TGG 0.709949 1_4:+61150087 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTGAATTTTGAAAATTAAAA+TGG + chr1_4:61148943-61148962 None:intergenic 15.0%
!! AAAAAAATAAAAGATACATC+GGG + chr1_4:61149502-61149521 None:intergenic 15.0%
!! GAAAAAAATAAAAGATACAT+CGG + chr1_4:61149503-61149522 None:intergenic 15.0%
!! TGAGAAAAAGATAATAAATT+TGG + chr1_4:61150780-61150799 None:intergenic 15.0%
!! TAAATAAGAATTCAATATCA+GGG + chr1_4:61151539-61151558 None:intergenic 15.0%
!! AAGTTAATTTAGTAGAATTG+AGG - chr1_4:61149091-61149110 Msa0175260:three_prime_UTR 20.0%
!! AATTGTTCGTTTACAAAAAT+AGG + chr1_4:61150031-61150050 None:intergenic 20.0%
!! AAATCAAATCAACATTACAA+AGG + chr1_4:61150968-61150987 None:intergenic 20.0%
!! CTATATCATTTCTCTAAATT+TGG - chr1_4:61151057-61151076 Msa0175260:intron 20.0%
!! CTAAATAAGAATTCAATATC+AGG + chr1_4:61151540-61151559 None:intergenic 20.0%
!! TTAGTTAACAAAATGTTAAC+AGG - chr1_4:61151572-61151591 Msa0175260:intron 20.0%
!! TAGTTAACAAAATGTTAACA+GGG - chr1_4:61151573-61151592 Msa0175260:intron 20.0%
!! CGCTTATATACAAAATAAAA+GGG + chr1_4:61152318-61152337 None:intergenic 20.0%
!! TCGCTTATATACAAAATAAA+AGG + chr1_4:61152319-61152338 None:intergenic 20.0%
!! AAAACACAAAATACAACATA+TGG + chr1_4:61152372-61152391 None:intergenic 20.0%
!! AATATTGGATAATCTTTGAA+AGG + chr1_4:61152543-61152562 None:intergenic 20.0%
!! AAGATTATCCAATATTCAAT+TGG - chr1_4:61152547-61152566 Msa0175260:five_prime_UTR 20.0%
! ACAAAAACTAATTTCCATCA+GGG + chr1_4:61148965-61148984 None:intergenic 25.0%
! TACAAAAACTAATTTCCATC+AGG + chr1_4:61148966-61148985 None:intergenic 25.0%
!! TGATTTTTATTCATCAGCTA+TGG - chr1_4:61149052-61149071 Msa0175260:three_prime_UTR 25.0%
! ATTTAGTAGAATTGAGGAAT+TGG - chr1_4:61149097-61149116 Msa0175260:three_prime_UTR 25.0%
! TTTAGTAGAATTGAGGAATT+GGG - chr1_4:61149098-61149117 Msa0175260:three_prime_UTR 25.0%
!!! TTTTTTCTACTAAGATGCAA+TGG - chr1_4:61150497-61150516 Msa0175260:intron 25.0%
!! TTTCTCAACTTTTGTTCAAT+TGG - chr1_4:61150564-61150583 Msa0175260:intron 25.0%
!! TTCTCAACTTTTGTTCAATT+GGG - chr1_4:61150565-61150584 Msa0175260:intron 25.0%
!!! GTTTTATTCTTATCACACAA+AGG - chr1_4:61150634-61150653 Msa0175260:CDS 25.0%
! ACATCTTAAATCTAAATCTC+TGG + chr1_4:61150825-61150844 None:intergenic 25.0%
!! AGATTTAGATTTAAGATGTG+TGG - chr1_4:61150826-61150845 Msa0175260:intron 25.0%
! TCTTAATATCATACAAGTTG+AGG + chr1_4:61150916-61150935 None:intergenic 25.0%
! ATTATTACCTATTACCTTCT+GGG - chr1_4:61151155-61151174 Msa0175260:intron 25.0%
!! TCATATGATCTGAATGTTTT+GGG - chr1_4:61151358-61151377 Msa0175260:intron 25.0%
! CTAAGAAACAATCGATAAAA+GGG + chr1_4:61151482-61151501 None:intergenic 25.0%
! ACTAAGAAACAATCGATAAA+AGG + chr1_4:61151483-61151502 None:intergenic 25.0%
! AGTTAACAAAATGTTAACAG+GGG - chr1_4:61151574-61151593 Msa0175260:intron 25.0%
! CTTTGATAAGTCAAAATGAT+GGG - chr1_4:61151767-61151786 Msa0175260:intron 25.0%
! TTTGATAAGTCAAAATGATG+GGG - chr1_4:61151768-61151787 Msa0175260:intron 25.0%
! ATACAAAATAAAAGGGAGAA+GGG + chr1_4:61152311-61152330 None:intergenic 25.0%
! TATACAAAATAAAAGGGAGA+AGG + chr1_4:61152312-61152331 None:intergenic 25.0%
! TGCATTATATTTAACAGACA+TGG - chr1_4:61152345-61152364 Msa0175260:five_prime_UTR 25.0%
!!! CAAACCAACTTATGTTTTTT+TGG - chr1_4:61152398-61152417 Msa0175260:five_prime_UTR 25.0%
! ACTTTGTACCAATTGAATAT+TGG + chr1_4:61152558-61152577 None:intergenic 25.0%
TGATTGAACAACAGAAATTG+AGG + chr1_4:61148842-61148861 None:intergenic 30.0%
! GCAATTTTCGTCAAATTTCT+CGG - chr1_4:61148891-61148910 Msa0175260:three_prime_UTR 30.0%
! ATTTTCAAAATTCACCCTGA+TGG - chr1_4:61148948-61148967 Msa0175260:three_prime_UTR 30.0%
! AGTTTTTGTACATGCAATTG+TGG - chr1_4:61148976-61148995 Msa0175260:three_prime_UTR 30.0%
! TTAGGTTAACGATGTCATTT+AGG - chr1_4:61149132-61149151 Msa0175260:three_prime_UTR 30.0%
GATGTTAATGTTATTGCCAA+TGG - chr1_4:61149230-61149249 Msa0175260:intron 30.0%
! AAACCAAATATTTGTTGAGC+AGG - chr1_4:61149776-61149795 Msa0175260:CDS 30.0%
ATTCCTGCTCAACAAATATT+TGG + chr1_4:61149782-61149801 None:intergenic 30.0%
! AAATATTTGTTGAGCAGGAA+TGG - chr1_4:61149781-61149800 Msa0175260:CDS 30.0%
TAACTCACTCTATTTGAATG+AGG + chr1_4:61149903-61149922 None:intergenic 30.0%
! CATTTTTGTAAATGAAAGCC+AGG - chr1_4:61149956-61149975 Msa0175260:intron 30.0%
! TACATCCTTTTGAACTGAAA+TGG + chr1_4:61150376-61150395 None:intergenic 30.0%
TGCTATATTAAACGAAATCG+CGG - chr1_4:61150751-61150770 Msa0175260:intron 30.0%
TTCTATATTCTGTGACACAT+GGG - chr1_4:61150858-61150877 Msa0175260:intron 30.0%
AGAAATGATATAGTCAGTGT+GGG + chr1_4:61151050-61151069 None:intergenic 30.0%
TAATCAACAAGTCATGTCAT+AGG + chr1_4:61151139-61151158 None:intergenic 30.0%
GATTATTACCTATTACCTTC+TGG - chr1_4:61151154-61151173 Msa0175260:intron 30.0%
!!! GAAATCACTTTTTGGTTCAT+TGG - chr1_4:61151181-61151200 Msa0175260:intron 30.0%
TGCATCATACACTGTAAATT+TGG + chr1_4:61151230-61151249 None:intergenic 30.0%
! CTCATATGATCTGAATGTTT+TGG - chr1_4:61151357-61151376 Msa0175260:intron 30.0%
TTTAGGTAAAGAGAATATCG+CGG - chr1_4:61151417-61151436 Msa0175260:intron 30.0%
TAACACATTGCATAATCCTA+GGG + chr1_4:61151600-61151619 None:intergenic 30.0%
ATAACACATTGCATAATCCT+AGG + chr1_4:61151601-61151620 None:intergenic 30.0%
TAGGATTATGCAATGTGTTA+TGG - chr1_4:61151600-61151619 Msa0175260:intron 30.0%
!! TTGATTTTGATCTGAAGAAC+GGG + chr1_4:61151717-61151736 None:intergenic 30.0%
!! GTTGATTTTGATCTGAAGAA+CGG + chr1_4:61151718-61151737 None:intergenic 30.0%
!!! CCATCATTTTGACTTATCAA+AGG + chr1_4:61151769-61151788 None:intergenic 30.0%
CCTTTGATAAGTCAAAATGA+TGG - chr1_4:61151766-61151785 Msa0175260:intron 30.0%
TTCAGTTAAAAATTTCCAGC+TGG - chr1_4:61151876-61151895 Msa0175260:intron 30.0%
!!! ACATAGTTGCTGATTTTACT+TGG - chr1_4:61152177-61152196 Msa0175260:CDS 30.0%
TACAAAATAAAAGGGAGAAG+GGG + chr1_4:61152310-61152329 None:intergenic 30.0%
ATGGCCAAAAAAACATAAGT+TGG + chr1_4:61152405-61152424 None:intergenic 30.0%
GAATAACACAACAAAGACTT+GGG + chr1_4:61152586-61152605 None:intergenic 30.0%
GTAAAGTGAGAAACGGTAAA+GGG + chr1_4:61148774-61148793 None:intergenic 35.0%
AGTAAAGTGAGAAACGGTAA+AGG + chr1_4:61148775-61148794 None:intergenic 35.0%
CAGCTATGGTTTAGAAGAAT+CGG - chr1_4:61149066-61149085 Msa0175260:three_prime_UTR 35.0%
AGCTATGGTTTAGAAGAATC+GGG - chr1_4:61149067-61149086 Msa0175260:three_prime_UTR 35.0%
! GTCATTTAGGAGTATGATCA+TGG - chr1_4:61149145-61149164 Msa0175260:three_prime_UTR 35.0%
! TTAGGAGTATGATCATGGAT+AGG - chr1_4:61149150-61149169 Msa0175260:three_prime_UTR 35.0%
AGTATGATCATGGATAGGAA+GGG - chr1_4:61149155-61149174 Msa0175260:three_prime_UTR 35.0%
AAGGGATTTGACGTGAAATT+CGG - chr1_4:61149173-61149192 Msa0175260:three_prime_UTR 35.0%
TTGAGGTTTCAGATGATACT+TGG - chr1_4:61149336-61149355 Msa0175260:CDS 35.0%
!! ACATCCTTTTTGAGCTGAAT+TGG - chr1_4:61149596-61149615 Msa0175260:CDS 35.0%
!! CATCCTTTTTGAGCTGAATT+GGG - chr1_4:61149597-61149616 Msa0175260:CDS 35.0%
AAACCCAATTCAGCTCAAAA+AGG + chr1_4:61149603-61149622 None:intergenic 35.0%
ACTCTATTTGAATGAGGTGT+GGG + chr1_4:61149897-61149916 None:intergenic 35.0%
GAGAGAACAAGAATGATTGT+TGG + chr1_4:61150077-61150096 None:intergenic 35.0%
TAACTCATTCTCTTTGAGTG+AGG - chr1_4:61150099-61150118 Msa0175260:CDS 35.0%
TCATACCTGCTCAACAAATA+TGG - chr1_4:61150179-61150198 Msa0175260:intron 35.0%
CATACCTGCTCAACAAATAT+GGG - chr1_4:61150180-61150199 Msa0175260:intron 35.0%
! AAAACCCATATTTGTTGAGC+AGG + chr1_4:61150187-61150206 None:intergenic 35.0%
! CCTTTTGAACTGAAATGGTT+AGG + chr1_4:61150371-61150390 None:intergenic 35.0%
CCTAACCATTTCAGTTCAAA+AGG - chr1_4:61150368-61150387 Msa0175260:CDS 35.0%
!! TTATTTCGAGTTACAGGCAA+TGG + chr1_4:61150458-61150477 None:intergenic 35.0%
!! CAATGCTTATTTCGAGTTAC+AGG + chr1_4:61150464-61150483 None:intergenic 35.0%
TGCTTAAACTCATGCTACAT+TGG + chr1_4:61150601-61150620 None:intergenic 35.0%
! CTTTTTCTCAGTTTGAACCA+AGG - chr1_4:61150790-61150809 Msa0175260:intron 35.0%
GTTCTATATTCTGTGACACA+TGG - chr1_4:61150857-61150876 Msa0175260:intron 35.0%
! TCATACAAGTTGAGGTTACA+AGG + chr1_4:61150908-61150927 None:intergenic 35.0%
GAGAAATGATATAGTCAGTG+TGG + chr1_4:61151051-61151070 None:intergenic 35.0%
ATTTGGATGATGTGTCAAGA+AGG - chr1_4:61151074-61151093 Msa0175260:intron 35.0%
TGGTAACAGATCAAACTTTC+TGG - chr1_4:61151201-61151220 Msa0175260:intron 35.0%
GGTAACAGATCAAACTTTCT+GGG - chr1_4:61151202-61151221 Msa0175260:intron 35.0%
ATCTGTCTCCATAAATTGGA+GGG + chr1_4:61151255-61151274 None:intergenic 35.0%
AATCTGTCTCCATAAATTGG+AGG + chr1_4:61151256-61151275 None:intergenic 35.0%
GCAAATCTGTCTCCATAAAT+TGG + chr1_4:61151259-61151278 None:intergenic 35.0%
AAATAGAGCCAACTCTTGAA+AGG + chr1_4:61151516-61151535 None:intergenic 35.0%
TGTTAAAAAACAAGGCTCCT+AGG - chr1_4:61151797-61151816 Msa0175260:intron 35.0%
TCCTAAAAATGGAGTTTCTG+AGG - chr1_4:61151906-61151925 Msa0175260:intron 35.0%
!! TCCTCAGAAACTCCATTTTT+AGG + chr1_4:61151910-61151929 None:intergenic 35.0%
! TAAAAATGGAGTTTCTGAGG+AGG - chr1_4:61151909-61151928 Msa0175260:intron 35.0%
GAAAATGTCATTCTGCAGTT+TGG - chr1_4:61151937-61151956 Msa0175260:CDS 35.0%
ATTCTGCAGTTTGGAAAAGT+CGG - chr1_4:61151946-61151965 Msa0175260:CDS 35.0%
GCATATTGCAAATGCTTCAA+AGG + chr1_4:61152013-61152032 None:intergenic 35.0%
GTGATCGTTGAGATTAATGA+AGG - chr1_4:61152151-61152170 Msa0175260:CDS 35.0%
ACAAAATAAAAGGGAGAAGG+GGG + chr1_4:61152309-61152328 None:intergenic 35.0%
TCACAAACCAATTGCATCTA+AGG + chr1_4:61152445-61152464 None:intergenic 35.0%
!! TGTGTCTGTTTGATAGCTTT+TGG - chr1_4:61152475-61152494 Msa0175260:five_prime_UTR 35.0%
CGAATAACACAACAAAGACT+TGG + chr1_4:61152587-61152606 None:intergenic 35.0%
TAAAGGGTAGAGAAGAAGGT+TGG + chr1_4:61148758-61148777 None:intergenic 40.0%
AGGCAGAGTAAAGTGAGAAA+CGG + chr1_4:61148781-61148800 None:intergenic 40.0%
CTGTTGTTCAATCACTCTGA+TGG - chr1_4:61148848-61148867 Msa0175260:three_prime_UTR 40.0%
TCAATCACTCTGATGGAAGA+AGG - chr1_4:61148855-61148874 Msa0175260:three_prime_UTR 40.0%
CAATCACTCTGATGGAAGAA+GGG - chr1_4:61148856-61148875 Msa0175260:three_prime_UTR 40.0%
AGTAGAATTGAGGAATTGGG+TGG - chr1_4:61149101-61149120 Msa0175260:three_prime_UTR 40.0%
AATTGGGTGGAGTTGGAATT+AGG - chr1_4:61149114-61149133 Msa0175260:three_prime_UTR 40.0%
GAGTATGATCATGGATAGGA+AGG - chr1_4:61149154-61149173 Msa0175260:three_prime_UTR 40.0%
AGGGATTTGACGTGAAATTC+GGG - chr1_4:61149174-61149193 Msa0175260:three_prime_UTR 40.0%
TTTGACGTGAAATTCGGGTA+TGG - chr1_4:61149179-61149198 Msa0175260:intron 40.0%
TGTTATTGCCAATGGTGCTT+TGG - chr1_4:61149238-61149257 Msa0175260:intron 40.0%
! ATCAATCACCAAAGCACCAT+TGG + chr1_4:61149249-61149268 None:intergenic 40.0%
! GTGCTTTGGTGATTGATGAT+GGG - chr1_4:61149252-61149271 Msa0175260:intron 40.0%
GGATGTGCTTATGAGAATTG+AGG - chr1_4:61149319-61149338 Msa0175260:exon 40.0%
GAGTTGGAGAGAAATTGTGA+AGG - chr1_4:61149400-61149419 Msa0175260:CDS 40.0%
! AGCTCAGAGTAGTTTGTGAT+TGG - chr1_4:61149569-61149588 Msa0175260:CDS 40.0%
GTTTGATGTCATTCTCACGT+TGG - chr1_4:61149735-61149754 Msa0175260:CDS 40.0%
TTGTTATCTTGGTTGTTGCG+TGG - chr1_4:61149816-61149835 Msa0175260:intron 40.0%
GTTAAGAATTCACCGCATCA+CGG + chr1_4:61149875-61149894 None:intergenic 40.0%
CACTCTATTTGAATGAGGTG+TGG + chr1_4:61149898-61149917 None:intergenic 40.0%
GAGAGAGCAAGAATGATTGT+TGG - chr1_4:61149925-61149944 Msa0175260:intron 40.0%
!! GCAAGAATGATTGTTGGCTT+TGG - chr1_4:61149931-61149950 Msa0175260:intron 40.0%
GAAAGAGCAAGAATGTTTCC+TGG + chr1_4:61149977-61149996 None:intergenic 40.0%
TCACTAACTCTTGTTGAGTG+AGG - chr1_4:61149995-61150014 Msa0175260:intron 40.0%
TAACTCTTGTTGAGTGAGGT+TGG - chr1_4:61149999-61150018 Msa0175260:intron 40.0%
!! CTGTTACTTTGGTTGTTGTG+TGG + chr1_4:61150147-61150166 None:intergenic 40.0%
TGTTGAGCAGGTATGATTGA+GGG + chr1_4:61150175-61150194 None:intergenic 40.0%
TTGTTGAGCAGGTATGATTG+AGG + chr1_4:61150176-61150195 None:intergenic 40.0%
ATTCGATGCAACTCTTGCAT+TGG + chr1_4:61150226-61150245 None:intergenic 40.0%
! ACTAGCTTCCTTGTGAATAG+TGG - chr1_4:61150407-61150426 Msa0175260:intron 40.0%
TTCCTTGTGAATAGTGGCAT+TGG - chr1_4:61150413-61150432 Msa0175260:intron 40.0%
!! TGAATAGTGGCATTGGTGTA+AGG - chr1_4:61150420-61150439 Msa0175260:intron 40.0%
!! GTTATTTTCATCATGCAGCC+TGG - chr1_4:61150706-61150725 Msa0175260:intron 40.0%
ATATTCTGTGACACATGGGT+TGG - chr1_4:61150862-61150881 Msa0175260:intron 40.0%
ATACCTCAACTTCCCAACAT+AGG + chr1_4:61151107-61151126 None:intergenic 40.0%
TTTCAGACCCAGAAGGTAAT+AGG + chr1_4:61151165-61151184 None:intergenic 40.0%
AAAGTGATTTCAGACCCAGA+AGG + chr1_4:61151172-61151191 None:intergenic 40.0%
!! CTGGGTCTGAAATCACTTTT+TGG - chr1_4:61151173-61151192 Msa0175260:intron 40.0%
TCATATGAGACATGCACGAT+GGG + chr1_4:61151346-61151365 None:intergenic 40.0%
ATCATATGAGACATGCACGA+TGG + chr1_4:61151347-61151366 None:intergenic 40.0%
!! ATCTGAATGTTTTGGGCTCT+AGG - chr1_4:61151365-61151384 Msa0175260:intron 40.0%
CACTTGACGTATCTCTCTTT+AGG - chr1_4:61151400-61151419 Msa0175260:intron 40.0%
TGAAGAAATTGAGTCTGCGT+CGG + chr1_4:61151667-61151686 None:intergenic 40.0%
!! TTATCAAAGGTGCTGCTGAT+TGG + chr1_4:61151756-61151775 None:intergenic 40.0%
! GGAGCTGGTGTTAAAAAACA+AGG - chr1_4:61151789-61151808 Msa0175260:intron 40.0%
TAAAAAACAAGGCTCCTAGG+TGG - chr1_4:61151800-61151819 Msa0175260:intron 40.0%
TGAAGTTCAAACACCAGCAT+TGG + chr1_4:61151837-61151856 None:intergenic 40.0%
TGCTGGTGTTTGAACTTCAA+TGG - chr1_4:61151838-61151857 Msa0175260:intron 40.0%
CTGGTTGCTTCTCCTAAAAA+TGG - chr1_4:61151895-61151914 Msa0175260:intron 40.0%
! CTGCAGAATGACATTTTCCT+GGG + chr1_4:61151935-61151954 None:intergenic 40.0%
! ACTGCAGAATGACATTTTCC+TGG + chr1_4:61151936-61151955 None:intergenic 40.0%
GATTGGATACTGGTAATCCA+TGG + chr1_4:61151986-61152005 None:intergenic 40.0%
AATGCTTCAAAGGCAGAGAT+TGG + chr1_4:61152003-61152022 None:intergenic 40.0%
CAATCACTCACAAGCAATCT+TGG + chr1_4:61152052-61152071 None:intergenic 40.0%
!!! AGTTGCTGATTTTACTTGGC+AGG - chr1_4:61152181-61152200 Msa0175260:CDS 40.0%
CAGTATTGCAGGTCTGATAT+AGG - chr1_4:61152230-61152249 Msa0175260:CDS 40.0%
ACAACGACCTTAGATGCAAT+TGG - chr1_4:61152435-61152454 Msa0175260:five_prime_UTR 40.0%
AGCTATCAAACAGACACAAC+TGG + chr1_4:61152473-61152492 None:intergenic 40.0%
ATGTATGTACTTGCCTGCTT+AGG - chr1_4:61152506-61152525 Msa0175260:five_prime_UTR 40.0%
TGTATGTACTTGCCTGCTTA+GGG - chr1_4:61152507-61152526 Msa0175260:five_prime_UTR 40.0%
ACGGTAAAGGGTAGAGAAGA+AGG + chr1_4:61148762-61148781 None:intergenic 45.0%
! TTGAGTTGTTGCAGAGAGTG+CGG + chr1_4:61148818-61148837 None:intergenic 45.0%
ATTGAGGAATTGGGTGGAGT+TGG - chr1_4:61149107-61149126 Msa0175260:three_prime_UTR 45.0%
! GGTGCTTTGGTGATTGATGA+TGG - chr1_4:61149251-61149270 Msa0175260:intron 45.0%
! ATGGGTTGAGTCAGAGTTGT+TGG - chr1_4:61149270-61149289 Msa0175260:intron 45.0%
! TGGGTTGAGTCAGAGTTGTT+GGG - chr1_4:61149271-61149290 Msa0175260:intron 45.0%
ACATCCCTCAAAAGCTCATG+GGG + chr1_4:61149305-61149324 None:intergenic 45.0%
CACATCCCTCAAAAGCTCAT+GGG + chr1_4:61149306-61149325 None:intergenic 45.0%
!! AACTTGCTGGACAATTGAGG+AGG + chr1_4:61149437-61149456 None:intergenic 45.0%
!! GTCAACTTGCTGGACAATTG+AGG + chr1_4:61149440-61149459 None:intergenic 45.0%
TTGTTGAGCAGGAATGGTTG+AGG - chr1_4:61149787-61149806 Msa0175260:intron 45.0%
!! TGAGGAGTGGGTTGTTATCT+TGG - chr1_4:61149805-61149824 Msa0175260:intron 45.0%
!! TTGTTGAGTGAGGTTGGCTT+TGG - chr1_4:61150005-61150024 Msa0175260:intron 45.0%
TCTTTGAGTGAGGTGTGAGT+TGG - chr1_4:61150109-61150128 Msa0175260:CDS 45.0%
CTTTGAGTGAGGTGTGAGTT+GGG - chr1_4:61150110-61150129 Msa0175260:CDS 45.0%
GTTGAGCAGGTATGATTGAG+GGG + chr1_4:61150174-61150193 None:intergenic 45.0%
CACCAATGCCACTATTCACA+AGG + chr1_4:61150418-61150437 None:intergenic 45.0%
TTTGCAGCCTCAACTGATGA+CGG - chr1_4:61150986-61151005 Msa0175260:intron 45.0%
AGAAGGAGTAGCACCTATGT+TGG - chr1_4:61151091-61151110 Msa0175260:intron 45.0%
GAAGGAGTAGCACCTATGTT+GGG - chr1_4:61151092-61151111 Msa0175260:intron 45.0%
GATGCACACCCTCCAATTTA+TGG - chr1_4:61151244-61151263 Msa0175260:intron 45.0%
TAGTTTCCTGCAGGAACTCT+TGG + chr1_4:61151322-61151341 None:intergenic 45.0%
GTAAAGAGAATATCGCGGTC+TGG - chr1_4:61151422-61151441 Msa0175260:intron 45.0%
CCAACTCTTGAAAGGAAGGT+AGG + chr1_4:61151508-61151527 None:intergenic 45.0%
CCTACCTTCCTTTCAAGAGT+TGG - chr1_4:61151505-61151524 Msa0175260:intron 45.0%
AGAGCCAACTCTTGAAAGGA+AGG + chr1_4:61151512-61151531 None:intergenic 45.0%
AAAATGTTAACAGGGGCCCT+AGG - chr1_4:61151581-61151600 Msa0175260:intron 45.0%
AAGAAATTGAGTCTGCGTCG+GGG + chr1_4:61151665-61151684 None:intergenic 45.0%
GAAGAAATTGAGTCTGCGTC+GGG + chr1_4:61151666-61151685 None:intergenic 45.0%
GATCTGAAGAACGGGATAGA+TGG + chr1_4:61151709-61151728 None:intergenic 45.0%
TGATTGGAGATTCTCTGAGC+GGG + chr1_4:61151740-61151759 None:intergenic 45.0%
CTGATTGGAGATTCTCTGAG+CGG + chr1_4:61151741-61151760 None:intergenic 45.0%
! AAGTCAAAATGATGGGGAGC+TGG - chr1_4:61151774-61151793 Msa0175260:intron 45.0%
!! TTTTAGGAGAAGCAACCAGC+TGG + chr1_4:61151894-61151913 None:intergenic 45.0%
GCAGTTTGGAAAAGTCGGAA+AGG - chr1_4:61151951-61151970 Msa0175260:CDS 45.0%
CAAAGGCAGAGATTGGATAC+TGG + chr1_4:61151996-61152015 None:intergenic 45.0%
!! TCTTGGTGTCAAAGCTGCTA+AGG + chr1_4:61152035-61152054 None:intergenic 45.0%
GATTGCTTGTGAGTGATTGC+TGG - chr1_4:61152053-61152072 Msa0175260:CDS 45.0%
TTGTGAGTGATTGCTGGAAC+AGG - chr1_4:61152059-61152078 Msa0175260:CDS 45.0%
!! TTACTTGGCAGGTTTTAGCC+AGG - chr1_4:61152192-61152211 Msa0175260:CDS 45.0%
!! AGGTTTTAGCCAGGTGGAAT+TGG - chr1_4:61152201-61152220 Msa0175260:CDS 45.0%
TCAGACCTGCAATACTGTGA+GGG + chr1_4:61152227-61152246 None:intergenic 45.0%
ATCAGACCTGCAATACTGTG+AGG + chr1_4:61152228-61152247 None:intergenic 45.0%
GCTTTCTGTTTAGTCCAACC+CGG - chr1_4:61152263-61152282 Msa0175260:five_prime_UTR 45.0%
TAAAAGGGAGAAGGGGGAAA+GGG + chr1_4:61152303-61152322 None:intergenic 45.0%
ATAAAAGGGAGAAGGGGGAA+AGG + chr1_4:61152304-61152323 None:intergenic 45.0%
GGTCGTTGTCTACAATCTCA+TGG + chr1_4:61152424-61152443 None:intergenic 45.0%
! TGAGTTGTTGCAGAGAGTGC+GGG + chr1_4:61148817-61148836 None:intergenic 50.0%
! ACATGCCCCATGAGCTTTTG+AGG - chr1_4:61149297-61149316 Msa0175260:intron 50.0%
! CATGCCCCATGAGCTTTTGA+GGG - chr1_4:61149298-61149317 Msa0175260:intron 50.0%
GCACATCCCTCAAAAGCTCA+TGG + chr1_4:61149307-61149326 None:intergenic 50.0%
CAGATGATACTTGGCCGACT+CGG - chr1_4:61149345-61149364 Msa0175260:CDS 50.0%
GCGACAACATTCTTCCGAGT+CGG + chr1_4:61149362-61149381 None:intergenic 50.0%
TCTCCAACTCCTGCAAACAC+CGG + chr1_4:61149390-61149409 None:intergenic 50.0%
GACAGGGAATGTCAACTTGC+TGG + chr1_4:61149450-61149469 None:intergenic 50.0%
ATTCCCTGTCTCCTTGAAGC+AGG - chr1_4:61149460-61149479 Msa0175260:CDS 50.0%
CTACCTGCTTCAAGGAGACA+GGG + chr1_4:61149466-61149485 None:intergenic 50.0%
GACAAGTGCTACCTGCTTCA+AGG + chr1_4:61149474-61149493 None:intergenic 50.0%
AGCAGGAATGGTTGAGGAGT+GGG - chr1_4:61149793-61149812 Msa0175260:intron 50.0%
ATCTTGGTTGTTGCGTGGCT+TGG - chr1_4:61149821-61149840 Msa0175260:intron 50.0%
TGAATTCCCAACCCACACCT+TGG - chr1_4:61149844-61149863 Msa0175260:intron 50.0%
GAACAACCAAGGTGTGGGTT+GGG + chr1_4:61149853-61149872 None:intergenic 50.0%
TCACGGAACAACCAAGGTGT+GGG + chr1_4:61149858-61149877 None:intergenic 50.0%
ATCACGGAACAACCAAGGTG+TGG + chr1_4:61149859-61149878 None:intergenic 50.0%
ACCTTGGTTGTTCCGTGATG+CGG - chr1_4:61149860-61149879 Msa0175260:intron 50.0%
AGCAGGTATGATTGAGGGGT+GGG + chr1_4:61150170-61150189 None:intergenic 50.0%
!! TGTGACACATGGGTTGGACT+GGG - chr1_4:61150868-61150887 Msa0175260:intron 50.0%
GAACTTGCCGTCATCAGTTG+AGG + chr1_4:61150996-61151015 None:intergenic 50.0%
GCACCTATGTTGGGAAGTTG+AGG - chr1_4:61151101-61151120 Msa0175260:intron 50.0%
TTGCTTGAGACTTAGCCTGG+TGG + chr1_4:61151293-61151312 None:intergenic 50.0%
CACTTGCTTGAGACTTAGCC+TGG + chr1_4:61151296-61151315 None:intergenic 50.0%
ACGATGGGATAGTTTCCTGC+AGG + chr1_4:61151331-61151350 None:intergenic 50.0%
TGGAGTTGTTCATGCCACCT+AGG + chr1_4:61151817-61151836 None:intergenic 50.0%
GGCATGAACAACTCCAATGC+TGG - chr1_4:61151821-61151840 Msa0175260:intron 50.0%
CGGAAAGGATGTGTTCACCA+TGG - chr1_4:61151966-61151985 Msa0175260:CDS 50.0%
ATTGGCCCTCACAGTATTGC+AGG - chr1_4:61152219-61152238 Msa0175260:CDS 50.0%
AAGGGGAGAGACTTAGAAGC+CGG + chr1_4:61152285-61152304 None:intergenic 50.0%
AAAAGGGAGAAGGGGGAAAG+GGG + chr1_4:61152302-61152321 None:intergenic 50.0%
GGAATGTAGCAACCCTAAGC+AGG + chr1_4:61152522-61152541 None:intergenic 50.0%
! GAGTTGTTGCAGAGAGTGCG+GGG + chr1_4:61148816-61148835 None:intergenic 55.0%
AAGAATGTTGTCGCGTGCGC+CGG - chr1_4:61149368-61149387 Msa0175260:CDS 55.0%
GCTACCTGCTTCAAGGAGAC+AGG + chr1_4:61149467-61149486 None:intergenic 55.0%
GAGCAGGAATGGTTGAGGAG+TGG - chr1_4:61149792-61149811 Msa0175260:intron 55.0%
GGAACAACCAAGGTGTGGGT+TGG + chr1_4:61149854-61149873 None:intergenic 55.0%
ACCGCATCACGGAACAACCA+AGG + chr1_4:61149864-61149883 None:intergenic 55.0%
!! TGAGGGGTGGGCTGTTACTT+TGG + chr1_4:61150158-61150177 None:intergenic 55.0%
GAGCAGGTATGATTGAGGGG+TGG + chr1_4:61150171-61150190 None:intergenic 55.0%
TCATCATGCAGCCTGGTCCA+AGG - chr1_4:61150713-61150732 Msa0175260:intron 55.0%
CATCATGCAGCCTGGTCCAA+GGG - chr1_4:61150714-61150733 Msa0175260:intron 55.0%
ATCATGCAGCCTGGTCCAAG+GGG - chr1_4:61150715-61150734 Msa0175260:intron 55.0%
CACTGAATGAGAGAGCCCCT+TGG + chr1_4:61150733-61150752 None:intergenic 55.0%
ATCTCTGGCAGCACTCACCT+TGG + chr1_4:61150810-61150829 None:intergenic 55.0%
!! CTGTGACACATGGGTTGGAC+TGG - chr1_4:61150867-61150886 Msa0175260:intron 55.0%
GACACTTGCGTGCAGCAAGA+AGG + chr1_4:61151018-61151037 None:intergenic 55.0%
! TGAGACTTAGCCTGGTGGTG+CGG + chr1_4:61151288-61151307 None:intergenic 55.0%
GTGTCTCCAAGAGTTCCTGC+AGG - chr1_4:61151313-61151332 Msa0175260:intron 55.0%
TTCAACAGCTGAGGCAGGGA+TGG + chr1_4:61151629-61151648 None:intergenic 55.0%
CAGGTTCAACAGCTGAGGCA+GGG + chr1_4:61151633-61151652 None:intergenic 55.0%
ACCTCCAGGTTCAACAGCTG+AGG + chr1_4:61151638-61151657 None:intergenic 55.0%
AGCTGTTGAACCTGGAGGTG+TGG - chr1_4:61151639-61151658 Msa0175260:intron 55.0%
!! CTTGGCAGGTTTTAGCCAGG+TGG - chr1_4:61152195-61152214 Msa0175260:CDS 55.0%
GAGAGACTTAGAAGCCGGGT+TGG + chr1_4:61152280-61152299 None:intergenic 55.0%
AGGGGAGAGACTTAGAAGCC+GGG + chr1_4:61152284-61152303 None:intergenic 55.0%
GTGCGGGGAAAGGAGAGAAG+AGG + chr1_4:61148801-61148820 None:intergenic 60.0%
! GTTGCAGAGAGTGCGGGGAA+AGG + chr1_4:61148811-61148830 None:intergenic 60.0%
ATGAGAGAGCCCCTTGGACC+AGG + chr1_4:61150727-61150746 None:intergenic 60.0%
TTGCAAAGTCCCGCACCACC+AGG - chr1_4:61151275-61151294 Msa0175260:intron 60.0%
! GAGACTTAGCCTGGTGGTGC+GGG + chr1_4:61151287-61151306 None:intergenic 60.0%
CCAGGTTCAACAGCTGAGGC+AGG + chr1_4:61151634-61151653 None:intergenic 60.0%
CCTGCCTCAGCTGTTGAACC+TGG - chr1_4:61151631-61151650 Msa0175260:intron 60.0%
GCCTCAGCTGTTGAACCTGG+AGG - chr1_4:61151634-61151653 Msa0175260:intron 60.0%
! TGGAGTTTCTGAGGAGGCCC+AGG - chr1_4:61151915-61151934 Msa0175260:intron 60.0%
CTGTGAGGGCCAATTCCACC+TGG + chr1_4:61152213-61152232 None:intergenic 60.0%
! GCGCCGGTGTTTGCAGGAGT+TGG - chr1_4:61149384-61149403 Msa0175260:CDS 65.0%
! TCGCGTGCGCCGGTGTTTGC+AGG - chr1_4:61149378-61149397 Msa0175260:CDS 70.0%
TGCGTCGGGGCCACACCTCC+AGG + chr1_4:61151652-61151671 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 61148746 61152653 61148746 ID=Msa0175260;Name=Msa0175260
chr1_4 mRNA 61148746 61152653 61148746 ID=Msa0175260-mRNA-1;Parent=Msa0175260;Name=Msa0175260-mRNA-1;_AED=0.07;_eAED=0.07;_QI=397|1|1|1|0.8|0.83|6|463|402
chr1_4 exon 61148746 61149196 61148746 ID=Msa0175260-mRNA-1:exon:19489;Parent=Msa0175260-mRNA-1
chr1_4 exon 61149319 61149805 61149319 ID=Msa0175260-mRNA-1:exon:19488;Parent=Msa0175260-mRNA-1
chr1_4 exon 61150013 61150189 61150013 ID=Msa0175260-mRNA-1:exon:19487;Parent=Msa0175260-mRNA-1
chr1_4 exon 61150277 61150406 61150277 ID=Msa0175260-mRNA-1:exon:19486;Parent=Msa0175260-mRNA-1
chr1_4 exon 61150588 61150675 61150588 ID=Msa0175260-mRNA-1:exon:19485;Parent=Msa0175260-mRNA-1
chr1_4 exon 61151918 61152653 61151918 ID=Msa0175260-mRNA-1:exon:19484;Parent=Msa0175260-mRNA-1
chr1_4 five_prime_UTR 61152257 61152653 61152257 ID=Msa0175260-mRNA-1:five_prime_utr;Parent=Msa0175260-mRNA-1
chr1_4 CDS 61151918 61152256 61151918 ID=Msa0175260-mRNA-1:cds;Parent=Msa0175260-mRNA-1
chr1_4 CDS 61150588 61150675 61150588 ID=Msa0175260-mRNA-1:cds;Parent=Msa0175260-mRNA-1
chr1_4 CDS 61150277 61150406 61150277 ID=Msa0175260-mRNA-1:cds;Parent=Msa0175260-mRNA-1
chr1_4 CDS 61150013 61150189 61150013 ID=Msa0175260-mRNA-1:cds;Parent=Msa0175260-mRNA-1
chr1_4 CDS 61149331 61149805 61149331 ID=Msa0175260-mRNA-1:cds;Parent=Msa0175260-mRNA-1
chr1_4 three_prime_UTR 61149319 61149330 61149319 ID=Msa0175260-mRNA-1:three_prime_utr;Parent=Msa0175260-mRNA-1
chr1_4 three_prime_UTR 61148746 61149196 61148746 ID=Msa0175260-mRNA-1:three_prime_utr;Parent=Msa0175260-mRNA-1
Gene Sequence

>Msa0175260

ATGTCATTTAGGAGTATGATCATGGATAGGAAGGGATTTGACGTGAAATTCGGGTATGGTATGAGATCAAGATCACAGTCACACTGTGATGTTAATGTTATTGCCAATGGTGCTTTGGTGATTGATGATGGGTTGAGTCAGAGTTGTTGGGCTAACATGCCCCATGAGCTTTTGAGGGATGTGCTTATGAGAATTGAGGTTTCAGATGATACTTGGCCGACTCGGAAGAATGTTGTCGCGTGCGCCGGTGTTTGCAGGAGTTGGAGAGAAATTGTGAAGGAACTTGTTAAGCCTCCTCAATTGTCCAGCAAGTTGACATTCCCTGTCTCCTTGAAGCAGCCTGGTCCAAGGGGCTCTCTCATTCAGTGCTATATTAAACGAAATCGCGGCGACCAAATTTATTATCTTTTTCTCAGTTTGAACCAAGCCTCAACTGATGACGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTGCAACCCACACTGACTATATCATTTCTCTAAATTTGGATGATGTGTCAAGAAGGAGTAGCACCTATGTTGGGAAGTTGAGATCAAACTTTCTGGGCACCAAATTTACAGTGTATGATGCACACCCTCCAATTTATGGAGACAGATTTGCAAAGTCCCGCACCACCAGGCTAAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCAGGAAACTATCCCATCGTGCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCTAGGATTATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCGACGCAGACTCAATTTCTTCATAGCAGAGTTGATACTTCTCCATCTATCCCGTTCTTCAGATCAAAATCAACCCGCTCAGAGAATCTCCAATCAGCAGCACCTTTGATAAGTCAAAATGATGGGGAGCTGGTGTTAAAAAACAAGGCTCCTAGGTGGCATGAACAACTCCAATGCTGGTGTTTGAACTTCAATGGACGTGTGACAGTCGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCTAAAAATGGAGTTTCTGAGGAGGCCCAGGAAAATGTCATTCTGCAGTTTGGAAAAGTCGGAAAGGATGTGTTCACCATGGATTACCAGTATCCAATCTCTGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAGTGA
Protein sequence

>Msa0175260

MSFRSMIMDRKGFDVKFGYGMRSRSQSHCDVNVIANGALVIDDGLSQSCWANMPHELLRDVLMRIEVSDDTWPTRKNVVACAGVCRSWREIVKELVKPPQLSSKLTFPVSLKQPGPRGSLIQCYIKRNRGDQIYYLFLSLNQASTDDGKFLLAARKCRRATHTDYIISLNLDDVSRRSSTYVGKLRSNFLGTKFTVYDAHPPIYGDRFAKSRTTRLSLKQVSPRVPAGNYPIVHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRVDTSPSIPFFRSKSTRSENLQSAAPLISQNDGELVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEEAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE*