Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343220 | XP_024632309.1 | 91.584 | 404 | 23 | 3 | 1 | 398 | 1 | 399 | 0.0 | 740 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343220 | sp|P93732|PIP_ARATH | 80.064 | 311 | 55 | 1 | 87 | 390 | 66 | 376 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343220 | G7IFC0 | 91.584 | 404 | 24 | 3 | 1 | 398 | 1 | 400 | 0.0 | 731 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1343190 | Msa1343220 | 0.849998 | 2.255258e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343220 | MtrunA17_Chr2g0280211 | 91.584 | 404 | 24 | 3 | 1 | 398 | 1 | 400 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343220 | AT2G14260.1 | 80.064 | 311 | 55 | 1 | 87 | 390 | 66 | 376 | 0.0 | 528 |
| Msa1343220 | AT2G14260.3 | 80.064 | 311 | 55 | 1 | 87 | 390 | 15 | 325 | 0.0 | 526 |
| Msa1343220 | AT2G14260.2 | 80.064 | 311 | 55 | 1 | 87 | 390 | 15 | 325 | 0.0 | 526 |
| Msa1343220 | AT2G14260.4 | 79.231 | 260 | 47 | 1 | 87 | 339 | 66 | 325 | 4.60e-150 | 430 |
Find 109 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATATAATATACAGGTATT+TGG | 0.188388 | tig0006328:-29612 | Msa1343220:intron |
| TATTATTGCATTTCAGTTTC+GGG | 0.206454 | tig0006328:+31195 | None:intergenic |
| CAATGTCTTTCTTCCTTAAA+AGG | 0.213106 | tig0006328:+29330 | None:intergenic |
| GTGGAATAAGGTTCAATATC+TGG | 0.231576 | tig0006328:+30796 | None:intergenic |
| CTATTATTGCATTTCAGTTT+CGG | 0.239400 | tig0006328:+31194 | None:intergenic |
| CGAAACTGAAATGCAATAAT+AGG | 0.273301 | tig0006328:-31193 | Msa1343220:five_prime_UTR |
| ACCTCCTACTACTTCTTTGA+TGG | 0.279710 | tig0006328:-30863 | Msa1343220:CDS |
| AACATGCAACACACCTTGTC+TGG | 0.289214 | tig0006328:+29543 | None:intergenic |
| TAGACGGAGTTGATAAAATA+AGG | 0.294530 | tig0006328:-27283 | Msa1343220:CDS |
| CAAAGAATGAAGTTGGGTTT+TGG | 0.295643 | tig0006328:-31156 | Msa1343220:exon |
| AAAATTACTCCTTGAATATA+AGG | 0.299469 | tig0006328:-26572 | Msa1343220:three_prime_UTR |
| AAGTATGATTCGGTAAAATT+CGG | 0.308173 | tig0006328:+29915 | None:intergenic |
| TGAAAGATGACCTGCCATTC+TGG | 0.315372 | tig0006328:+29706 | None:intergenic |
| AGGTTACTGGCATCGTCCTC+TGG | 0.322231 | tig0006328:-29361 | Msa1343220:CDS |
| TAAGGAAGAAAGACATTGAT+TGG | 0.348934 | tig0006328:-29325 | Msa1343220:CDS |
| AGCAGCTATGCCTGGTTCAT+TGG | 0.356957 | tig0006328:+26899 | None:intergenic |
| AGATCCCAGGCTGACATCAT+AGG | 0.366457 | tig0006328:+27144 | None:intergenic |
| AGCAGTCATCATTTCCCATT+TGG | 0.384899 | tig0006328:+28361 | None:intergenic |
| AAAACAAAATCAAGAATAAA+GGG | 0.386373 | tig0006328:-26848 | Msa1343220:CDS |
| TCAGCTTTATGCTGGTGGTT+TGG | 0.388346 | tig0006328:-26647 | Msa1343220:three_prime_UTR |
| AAGGAGAGAGGATGTTTCAT+TGG | 0.391064 | tig0006328:-28866 | Msa1343220:CDS |
| CCGCTAGAGCATGGACCAAA+TGG | 0.402654 | tig0006328:-28376 | Msa1343220:CDS |
| TTAATAACAAAGAATGAAGT+TGG | 0.411395 | tig0006328:-31163 | Msa1343220:exon |
| CAGATCTTCACACTATCTAC+TGG | 0.413115 | tig0006328:-30756 | Msa1343220:CDS |
| AGTATGATTCGGTAAAATTC+GGG | 0.416751 | tig0006328:+29916 | None:intergenic |
| ATCCCTTGTTGACGAAATAG+TGG | 0.419846 | tig0006328:+27330 | None:intergenic |
| TACAGGTATTTGGTGGATCA+TGG | 0.425085 | tig0006328:-29602 | Msa1343220:intron |
| ACTATCTACTGGGAGCAATC+TGG | 0.425472 | tig0006328:-30745 | Msa1343220:CDS |
| GCTGCCCTATGATGTCAGCC+TGG | 0.426579 | tig0006328:-27149 | Msa1343220:CDS |
| CAGAGATCTTATTCCAGAAA+AGG | 0.427576 | tig0006328:-28885 | Msa1343220:CDS |
| TCTCTTTATCAGAGAGGTGC+AGG | 0.430711 | tig0006328:-29817 | Msa1343220:intron |
| AGAGAATTGTAGTAGTTGTT+GGG | 0.432876 | tig0006328:+31080 | None:intergenic |
| GTAGTATTAGTTGTTGAGAA+TGG | 0.438233 | tig0006328:+31120 | None:intergenic |
| GAGAGAATTGTAGTAGTTGT+TGG | 0.439638 | tig0006328:+31079 | None:intergenic |
| CCACCAGCATAAAGCTGAGC+TGG | 0.451180 | tig0006328:+26652 | None:intergenic |
| ACACCTTGTCTGGGTGAGAT+TGG | 0.451597 | tig0006328:+29553 | None:intergenic |
| ATTTGGTTGCCTTATATTCA+AGG | 0.453747 | tig0006328:+26563 | None:intergenic |
| TTCTTTGATGGCTTCACAAA+AGG | 0.457949 | tig0006328:-30851 | Msa1343220:CDS |
| GGGGAACTTCCCCAAGCAAT+AGG | 0.458105 | tig0006328:-29951 | Msa1343220:CDS |
| CGCTAGAGCATGGACCAAAT+GGG | 0.461856 | tig0006328:-28375 | Msa1343220:CDS |
| ATATGCAGTAAGAAAGAACT+TGG | 0.474476 | tig0006328:-30941 | Msa1343220:intron |
| GATATTGAACCTTATTCCAC+TGG | 0.477354 | tig0006328:-30793 | Msa1343220:CDS |
| GGTTACTGGCATCGTCCTCT+GGG | 0.486577 | tig0006328:-29360 | Msa1343220:CDS |
| CTACATGGAGGCCCTGGAGG+GGG | 0.488526 | tig0006328:-29970 | Msa1343220:CDS |
| ACAGGTATTTGGTGGATCAT+GGG | 0.494915 | tig0006328:-29601 | Msa1343220:intron |
| TAATAACAAAGAATGAAGTT+GGG | 0.495195 | tig0006328:-31162 | Msa1343220:exon |
| CCAGCTCAGCTTTATGCTGG+TGG | 0.497912 | tig0006328:-26652 | Msa1343220:three_prime_UTR |
| ATACAGGTGGTTTCAGATGC+AGG | 0.499919 | tig0006328:-26930 | Msa1343220:intron |
| TTCCTACATGGAGGCCCTGG+AGG | 0.504186 | tig0006328:-29973 | Msa1343220:CDS |
| ATCCCAGCTCAGCTTTATGC+TGG | 0.504560 | tig0006328:-26655 | Msa1343220:three_prime_UTR |
| TATAATATACAGGTATTTGG+TGG | 0.506336 | tig0006328:-29609 | Msa1343220:intron |
| AAACAAAAGGTGCAGTTGGT+TGG | 0.509162 | tig0006328:-26798 | Msa1343220:three_prime_UTR |
| TGGAATAAGGTTCAATATCT+GGG | 0.511220 | tig0006328:+30797 | None:intergenic |
| CAGCCAGTTGTATTCCTACA+TGG | 0.513350 | tig0006328:-29985 | Msa1343220:CDS |
| CCTCCATGTAGGAATACAAC+TGG | 0.513574 | tig0006328:+29982 | None:intergenic |
| TCTGATTCATTCTTGTTAGA+CGG | 0.517803 | tig0006328:-27299 | Msa1343220:CDS |
| TTTGGAGATTCCAGAATGGC+AGG | 0.518946 | tig0006328:-29716 | Msa1343220:intron |
| GTATTCCTACATGGAGGCCC+TGG | 0.518972 | tig0006328:-29976 | Msa1343220:CDS |
| CTGCCCTATGATGTCAGCCT+GGG | 0.519055 | tig0006328:-27148 | Msa1343220:CDS |
| AATGAAGATACCGTCAAAAG+AGG | 0.525628 | tig0006328:-28326 | Msa1343220:CDS |
| AGCTATGCCTGGTTCATTGG+CGG | 0.526445 | tig0006328:+26902 | None:intergenic |
| ACAAGTTCAGCAGCTATGCC+TGG | 0.527402 | tig0006328:+26891 | None:intergenic |
| GAAGCCATCAAAGAAGTAGT+AGG | 0.528019 | tig0006328:+30859 | None:intergenic |
| TTCTGTTGTGACAATGATGA+AGG | 0.534372 | tig0006328:+26703 | None:intergenic |
| GATCCCAGGCTGACATCATA+GGG | 0.540983 | tig0006328:+27145 | None:intergenic |
| TCCTACATGGAGGCCCTGGA+GGG | 0.541912 | tig0006328:-29972 | Msa1343220:CDS |
| CTTACCCGAAAATCTGCCTC+TGG | 0.542931 | tig0006328:+27108 | None:intergenic |
| GGACATTCCGCCAATGAACC+AGG | 0.545853 | tig0006328:-26909 | Msa1343220:CDS |
| CTCTGATGACATCGAAACTC+AGG | 0.546649 | tig0006328:-28824 | Msa1343220:intron |
| GGGTACAAATTTGTGTTGAC+TGG | 0.549973 | tig0006328:+30817 | None:intergenic |
| AGTATGCTGCCGCTAGAGCA+TGG | 0.551887 | tig0006328:-28385 | Msa1343220:CDS |
| CCTACATGGAGGCCCTGGAG+GGG | 0.561466 | tig0006328:-29971 | Msa1343220:CDS |
| AGGCATAGCTGCTGAACTTG+TGG | 0.566543 | tig0006328:-26889 | Msa1343220:CDS |
| ACATGCAACACACCTTGTCT+GGG | 0.571646 | tig0006328:+29544 | None:intergenic |
| CACCAGCATAAAGCTGAGCT+GGG | 0.575185 | tig0006328:+26653 | None:intergenic |
| CCCCTCCAGGGCCTCCATGT+AGG | 0.577239 | tig0006328:+29971 | None:intergenic |
| TTTCCTTGCAGACATAAGGA+AGG | 0.577689 | tig0006328:+26758 | None:intergenic |
| AAACCACTATTTCGTCAACA+AGG | 0.580929 | tig0006328:-27333 | Msa1343220:CDS |
| AACATTTGGAGATTCCAGAA+TGG | 0.582647 | tig0006328:-29720 | Msa1343220:CDS |
| CTCTTTATCAGAGAGGTGCA+GGG | 0.591234 | tig0006328:-29816 | Msa1343220:intron |
| GTGATTTACCTGCACGATTG+TGG | 0.594189 | tig0006328:+27250 | None:intergenic |
| CAGGTATTTGGTGGATCATG+GGG | 0.595807 | tig0006328:-29600 | Msa1343220:CDS |
| TATCGACACCACAATCGTGC+AGG | 0.597111 | tig0006328:-27258 | Msa1343220:intron |
| CCATGCTTTATGAAGATCCC+AGG | 0.601122 | tig0006328:+27131 | None:intergenic |
| CCTGGGATCTTCATAAAGCA+TGG | 0.602620 | tig0006328:-27131 | Msa1343220:CDS |
| AACCACTATTTCGTCAACAA+GGG | 0.605554 | tig0006328:-27332 | Msa1343220:CDS |
| TGTTATGCTCTAAGCAAGCA+TGG | 0.608642 | tig0006328:+29782 | None:intergenic |
| AGATCTTCACACTATCTACT+GGG | 0.609166 | tig0006328:-30755 | Msa1343220:CDS |
| GTTATGCTCTAAGCAAGCAT+GGG | 0.610694 | tig0006328:+29783 | None:intergenic |
| ATAAAGGGGACTAAAGTGAG+TGG | 0.611255 | tig0006328:-26833 | Msa1343220:exon |
| GCCATCAAAGAAGTAGTAGG+AGG | 0.612123 | tig0006328:+30862 | None:intergenic |
| AAAATAGTCTAATACCATCA+GGG | 0.617415 | tig0006328:+29273 | None:intergenic |
| AAGTAGTAGGAGGTACTGAG+TGG | 0.619050 | tig0006328:+30872 | None:intergenic |
| CAAGTACTCACATAGCCAGT+GGG | 0.627218 | tig0006328:+30718 | None:intergenic |
| CTTATTCCAGAAAAGGAGAG+AGG | 0.629277 | tig0006328:-28878 | Msa1343220:CDS |
| GAGCAATCTGGAAATCCCAC+TGG | 0.629628 | tig0006328:-30733 | Msa1343220:CDS |
| CCATTTGGTCCATGCTCTAG+CGG | 0.635703 | tig0006328:+28376 | None:intergenic |
| CAGCCAATCTCACCCAGACA+AGG | 0.636145 | tig0006328:-29556 | Msa1343220:intron |
| AAACAAAATCAAGAATAAAG+GGG | 0.642276 | tig0006328:-26847 | Msa1343220:CDS |
| GCTTAGAGCATAACACCACA+TGG | 0.643086 | tig0006328:-29774 | Msa1343220:CDS |
| GCTGCTGCAATATACCCTGA+TGG | 0.658878 | tig0006328:-29287 | Msa1343220:intron |
| ACAAGTACTCACATAGCCAG+TGG | 0.664459 | tig0006328:+30717 | None:intergenic |
| TTATGCTCTAAGCAAGCATG+GGG | 0.676961 | tig0006328:+29784 | None:intergenic |
| CCAGTTGTATTCCTACATGG+AGG | 0.687512 | tig0006328:-29982 | Msa1343220:CDS |
| TCTTCATAAAGCATGGCCAG+AGG | 0.694730 | tig0006328:-27124 | Msa1343220:CDS |
| GTCATCAATAAGGTCCCATG+TGG | 0.703571 | tig0006328:+29759 | None:intergenic |
| GTTACTGGCATCGTCCTCTG+GGG | 0.717394 | tig0006328:-29359 | Msa1343220:CDS |
| CTTAGAGCATAACACCACAT+GGG | 0.720902 | tig0006328:-29773 | Msa1343220:CDS |
| TTAAAAGGAAGATTCCCCAG+AGG | 0.780240 | tig0006328:+29345 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTATTTAATATAATATAC+AGG | - | tig0006328:28148-28167 | Msa1343220:intron | 10.0% |
| !!! | TATTTTATTATTTTGTTACA+AGG | - | tig0006328:28386-28405 | Msa1343220:CDS | 10.0% |
| !!! | AAATAACTTTACATTTTAAA+AGG | + | tig0006328:28574-28593 | None:intergenic | 10.0% |
| !!! | TTTGAAATTTCATTTATGTT+AGG | - | tig0006328:27262-27281 | Msa1343220:CDS | 15.0% |
| !! | TTGAAATTTCATTTATGTTA+GGG | - | tig0006328:27263-27282 | Msa1343220:CDS | 15.0% |
| !!! | TTGTTATTAAAAACTTCAAA+TGG | + | tig0006328:27337-27356 | None:intergenic | 15.0% |
| !! | ATATATCAATTCCAATAAAA+TGG | + | tig0006328:27535-27554 | None:intergenic | 15.0% |
| !! | AATAAAATGCATAAAATCAA+GGG | + | tig0006328:27712-27731 | None:intergenic | 15.0% |
| !! | TAATATAATATACAGGTATT+TGG | - | tig0006328:28155-28174 | Msa1343220:intron | 15.0% |
| !!! | GTTTTATATAATGTAAAAGA+AGG | + | tig0006328:28263-28282 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTTATTGTTACTT+TGG | - | tig0006328:28992-29011 | Msa1343220:intron | 15.0% |
| !!! | ATTTTTTTCTTTTTATTCGA+GGG | - | tig0006328:29260-29279 | Msa1343220:intron | 15.0% |
| !!! | TATATTTTTAACAAAGAGAT+TGG | + | tig0006328:29302-29321 | None:intergenic | 15.0% |
| !! | TCTTTGTTAAAAATATAAAG+AGG | - | tig0006328:29305-29324 | Msa1343220:CDS | 15.0% |
| !!! | TAGACTTGATATTTTTAAAA+AGG | + | tig0006328:30308-30327 | None:intergenic | 15.0% |
| !! | TCTCAATTATAAATTATGAA+GGG | + | tig0006328:30340-30359 | None:intergenic | 15.0% |
| !! | ATCTCAATTATAAATTATGA+AGG | + | tig0006328:30341-30360 | None:intergenic | 15.0% |
| !! | AAAAACAAAATCAAGAATAA+AGG | - | tig0006328:30918-30937 | Msa1343220:CDS | 15.0% |
| !! | AAAACAAAATCAAGAATAAA+GGG | - | tig0006328:30919-30938 | Msa1343220:CDS | 15.0% |
| !! | TTAATAACAAAGAATGAAGT+TGG | - | tig0006328:26604-26623 | Msa1343220:three_prime_UTR | 20.0% |
| !! | TAATAACAAAGAATGAAGTT+GGG | - | tig0006328:26605-26624 | Msa1343220:three_prime_UTR | 20.0% |
| !!! | TATTTTCAACACTAAATTGA+CGG | + | tig0006328:27092-27111 | None:intergenic | 20.0% |
| !!! | AATGGATGATTTTGAATTTT+AGG | + | tig0006328:27115-27134 | None:intergenic | 20.0% |
| !! | TTAATTGAATGTAATCACAT+GGG | + | tig0006328:27200-27219 | None:intergenic | 20.0% |
| !! | ATTAATTGAATGTAATCACA+TGG | + | tig0006328:27201-27220 | None:intergenic | 20.0% |
| !! | AAATTATTAATAGACACGTT+GGG | - | tig0006328:27232-27251 | Msa1343220:intron | 20.0% |
| !!! | CTTTTCTTGATTTTTATCTA+TGG | - | tig0006328:27366-27385 | Msa1343220:intron | 20.0% |
| !! | GAATAAAATGCATAAAATCA+AGG | + | tig0006328:27713-27732 | None:intergenic | 20.0% |
| !!! | ATTTTTCAATGTCATCAATA+AGG | + | tig0006328:28021-28040 | None:intergenic | 20.0% |
| !! | TGAAAAATTAAGAGAACATT+TGG | - | tig0006328:28033-28052 | Msa1343220:intron | 20.0% |
| !! | AGAATCTTAAAATGTATGTA+TGG | + | tig0006328:28104-28123 | None:intergenic | 20.0% |
| !!! | AACTTTACATTTTAAAAGGA+AGG | + | tig0006328:28570-28589 | None:intergenic | 20.0% |
| !!! | GAACTAAAATTATTTTCATG+AGG | - | tig0006328:28658-28677 | Msa1343220:intron | 20.0% |
| !!! | ATTCTTTTTTGTTGTTAGTT+TGG | - | tig0006328:28724-28743 | Msa1343220:intron | 20.0% |
| !! | AAAAAAATCATGACTTTAAG+TGG | - | tig0006328:28816-28835 | Msa1343220:intron | 20.0% |
| !! | TATAGTTGAAGATAATTGAA+CGG | - | tig0006328:29070-29089 | Msa1343220:intron | 20.0% |
| !! | CCATCATGTAAAAATTAAAA+TGG | + | tig0006328:29240-29259 | None:intergenic | 20.0% |
| !!! | CCATTTTAATTTTTACATGA+TGG | - | tig0006328:29237-29256 | Msa1343220:intron | 20.0% |
| !!! | GATTTTTTTCTTTTTATTCG+AGG | - | tig0006328:29259-29278 | Msa1343220:intron | 20.0% |
| !!! | TTTTTTTCTTTTTATTCGAG+GGG | - | tig0006328:29261-29280 | Msa1343220:intron | 20.0% |
| !!! | AGCTATATAAGTTAGTTTAT+CGG | - | tig0006328:30228-30247 | Msa1343220:intron | 20.0% |
| !!! | AAAGGATATTTTTTTCTATC+AGG | - | tig0006328:30395-30414 | Msa1343220:intron | 20.0% |
| !!! | AATCTGAATTTTGATGTAAT+AGG | + | tig0006328:30554-30573 | None:intergenic | 20.0% |
| !! | AAACAAAATCAAGAATAAAG+GGG | - | tig0006328:30920-30939 | Msa1343220:CDS | 20.0% |
| !! | AAAATTACTCCTTGAATATA+AGG | - | tig0006328:31195-31214 | Msa1343220:five_prime_UTR | 20.0% |
| ! | TATTATTGCATTTCAGTTTC+GGG | + | tig0006328:26575-26594 | None:intergenic | 25.0% |
| ! | CTATTATTGCATTTCAGTTT+CGG | + | tig0006328:26576-26595 | None:intergenic | 25.0% |
| ! | CAAATTATTAATAGACACGT+TGG | - | tig0006328:27231-27250 | Msa1343220:intron | 25.0% |
| ! | AATTATTAATAGACACGTTG+GGG | - | tig0006328:27233-27252 | Msa1343220:intron | 25.0% |
| !!! | AATTTAGTCTCTGAAATTGT+AGG | + | tig0006328:27305-27324 | None:intergenic | 25.0% |
| ! | TACAATTTCAGAGACTAAAT+TGG | - | tig0006328:27304-27323 | Msa1343220:CDS | 25.0% |
| !! | TTGATTTTTATCTATGGAGT+AGG | - | tig0006328:27372-27391 | Msa1343220:intron | 25.0% |
| ! | GATTGATGAAGACTATATAA+TGG | - | tig0006328:27413-27432 | Msa1343220:intron | 25.0% |
| ! | GACTATATAATGGTTATATG+TGG | - | tig0006328:27423-27442 | Msa1343220:intron | 25.0% |
| ! | AATTCCAATAAAATGGTCTA+CGG | + | tig0006328:27528-27547 | None:intergenic | 25.0% |
| !! | AATATTTCGGTTTTCCAAAT+TGG | + | tig0006328:27598-27617 | None:intergenic | 25.0% |
| !! | TAATTTTGTAAACACTTTCC+TGG | - | tig0006328:27759-27778 | Msa1343220:intron | 25.0% |
| !!! | AAGTATGATTCGGTAAAATT+CGG | + | tig0006328:27855-27874 | None:intergenic | 25.0% |
| !! | TAATTTTCTCTTTATCAGAG+AGG | - | tig0006328:27944-27963 | Msa1343220:intron | 25.0% |
| ! | TATAATATACAGGTATTTGG+TGG | - | tig0006328:28158-28177 | Msa1343220:intron | 25.0% |
| ! | AAAAAGTGAACAACATAACA+TGG | + | tig0006328:28362-28381 | None:intergenic | 25.0% |
| !!! | TTATTTTGTTACAAGGTTAC+TGG | - | tig0006328:28393-28412 | Msa1343220:intron | 25.0% |
| ! | AAAATAGTCTAATACCATCA+GGG | + | tig0006328:28497-28516 | None:intergenic | 25.0% |
| ! | AAAAATAGTCTAATACCATC+AGG | + | tig0006328:28498-28517 | None:intergenic | 25.0% |
| !!! | ATTGATTTGATTGTGATCTA+TGG | - | tig0006328:28778-28797 | Msa1343220:intron | 25.0% |
| ! | GTTAAAAATATAAAGAGGAC+TGG | - | tig0006328:29310-29329 | Msa1343220:CDS | 25.0% |
| ! | CAACAAAAAAAGAACAATTC+AGG | + | tig0006328:29337-29356 | None:intergenic | 25.0% |
| ! | TTATCAAATGAGGAATTACA+TGG | - | tig0006328:29492-29511 | Msa1343220:intron | 25.0% |
| !! | GTGTGATTCTAACAATTTTA+AGG | - | tig0006328:29692-29711 | Msa1343220:intron | 25.0% |
| !!! | ATTCTAACAATTTTAAGGCA+CGG | - | tig0006328:29697-29716 | Msa1343220:intron | 25.0% |
| !! | ACATTAACTATTTCTCGATT+GGG | + | tig0006328:29816-29835 | None:intergenic | 25.0% |
| !! | AACATTAACTATTTCTCGAT+TGG | + | tig0006328:29817-29836 | None:intergenic | 25.0% |
| !!! | GATTATTCTTCTCTAAAATG+AGG | - | tig0006328:29884-29903 | Msa1343220:intron | 25.0% |
| !!! | CTGTTTTACAATTTAACTTG+TGG | + | tig0006328:30072-30091 | None:intergenic | 25.0% |
| ! | AGCTGAAATGACATTTAAAT+TGG | - | tig0006328:30116-30135 | Msa1343220:intron | 25.0% |
| !! | TTTACTAAACTCCTCTATTT+TGG | - | tig0006328:30177-30196 | Msa1343220:intron | 25.0% |
| !!! | TGAATTTTGATGTAATAGGA+TGG | + | tig0006328:30550-30569 | None:intergenic | 25.0% |
| ! | ATCTTCAATCTTGACTTTAT+AGG | - | tig0006328:30580-30599 | Msa1343220:intron | 25.0% |
| ! | TCTTCAATCTTGACTTTATA+GGG | - | tig0006328:30581-30600 | Msa1343220:intron | 25.0% |
| !! | TTTGGCATTTAACTTTCAAT+TGG | + | tig0006328:30728-30747 | None:intergenic | 25.0% |
| ! | TGAATCATACTATGAAATAC+AGG | - | tig0006328:30821-30840 | Msa1343220:CDS | 25.0% |
| CGAAACTGAAATGCAATAAT+AGG | - | tig0006328:26574-26593 | Msa1343220:three_prime_UTR | 30.0% | |
| GTAGTATTAGTTGTTGAGAA+TGG | + | tig0006328:26650-26669 | None:intergenic | 30.0% | |
| AGAGAATTGTAGTAGTTGTT+GGG | + | tig0006328:26690-26709 | None:intergenic | 30.0% | |
| AAGAAGAAGAAGAAGTGATT+TGG | + | tig0006328:26715-26734 | None:intergenic | 30.0% | |
| ATATGCAGTAAGAAAGAACT+TGG | - | tig0006328:26826-26845 | Msa1343220:exon | 30.0% | |
| !! | GTAAGAAAGAACTTGGTTTT+TGG | - | tig0006328:26833-26852 | Msa1343220:exon | 30.0% |
| TGGAATAAGGTTCAATATCT+GGG | + | tig0006328:26973-26992 | None:intergenic | 30.0% | |
| TTCAAAAAACCAGTGGAATA+AGG | + | tig0006328:26986-27005 | None:intergenic | 30.0% | |
| !!! | TTATTCCACTGGTTTTTTGA+AGG | - | tig0006328:26985-27004 | Msa1343220:intron | 30.0% |
| ATTATTAATAGACACGTTGG+GGG | - | tig0006328:27234-27253 | Msa1343220:intron | 30.0% | |
| ATCATCTTGAATTCTACATG+AGG | + | tig0006328:27500-27519 | None:intergenic | 30.0% | |
| ! | AATTCCGTAGACCATTTTAT+TGG | - | tig0006328:27521-27540 | Msa1343220:intron | 30.0% |
| ATATGTATGTAGTTCATCTG+TGG | - | tig0006328:27551-27570 | Msa1343220:intron | 30.0% | |
| TTTGGAAAACCGAAATATTC+TGG | - | tig0006328:27599-27618 | Msa1343220:intron | 30.0% | |
| TTGGAAAACCGAAATATTCT+GGG | - | tig0006328:27600-27619 | Msa1343220:intron | 30.0% | |
| !! | AGTATGATTCGGTAAAATTC+GGG | + | tig0006328:27854-27873 | None:intergenic | 30.0% |
| ! | CCTGATCAAAAAGTATGATT+CGG | + | tig0006328:27865-27884 | None:intergenic | 30.0% |
| AGATGTGTAATCTGTAGTTA+AGG | - | tig0006328:28328-28347 | Msa1343220:CDS | 30.0% | |
| CAATGTCTTTCTTCCTTAAA+AGG | + | tig0006328:28440-28459 | None:intergenic | 30.0% | |
| TAAGGAAGAAAGACATTGAT+TGG | - | tig0006328:28442-28461 | Msa1343220:intron | 30.0% | |
| !!! | AGACATTGATTGGTTTTATG+AGG | - | tig0006328:28452-28471 | Msa1343220:intron | 30.0% |
| !!! | GACATTGATTGGTTTTATGA+GGG | - | tig0006328:28453-28472 | Msa1343220:intron | 30.0% |
| TTTGATACATAGAATAAGCC+TGG | - | tig0006328:28602-28621 | Msa1343220:intron | 30.0% | |
| !! | TTATTGTTACTTTGGTGTCA+AGG | - | tig0006328:29000-29019 | Msa1343220:intron | 30.0% |
| ATACAAAGACCTATTGGTAT+TGG | + | tig0006328:29122-29141 | None:intergenic | 30.0% | |
| AAATTGTTAATGTACCTGAC+TGG | - | tig0006328:29172-29191 | Msa1343220:intron | 30.0% | |
| CATACTAAGAACAGAGATAT+AGG | + | tig0006328:29368-29387 | None:intergenic | 30.0% | |
| !! | AGACAATGATTACTTTTCAC+TGG | - | tig0006328:29464-29483 | Msa1343220:intron | 30.0% |
| ACTGGTAAGTTTATCAAATG+AGG | - | tig0006328:29482-29501 | Msa1343220:intron | 30.0% | |
| ! | ATGAGGAATTACATGGATTT+TGG | - | tig0006328:29499-29518 | Msa1343220:intron | 30.0% |
| GAGAAATTAGGAATAGAGAA+GGG | + | tig0006328:29571-29590 | None:intergenic | 30.0% | |
| AGAGAAATTAGGAATAGAGA+AGG | + | tig0006328:29572-29591 | None:intergenic | 30.0% | |
| ATGCATATAAATGCAGTACA+CGG | - | tig0006328:29736-29755 | Msa1343220:CDS | 30.0% | |
| !!! | TACACGGTGAATTTTTTATG+TGG | - | tig0006328:29752-29771 | Msa1343220:CDS | 30.0% |
| ! | ATTAACTATTTCTCGATTGG+GGG | + | tig0006328:29814-29833 | None:intergenic | 30.0% |
| ! | CATTAACTATTTCTCGATTG+GGG | + | tig0006328:29815-29834 | None:intergenic | 30.0% |
| TAATGTTCTATGATCTCTCT+AGG | - | tig0006328:29830-29849 | Msa1343220:intron | 30.0% | |
| ! | AGTAGCTAATAGCTTTTCTT+GGG | + | tig0006328:30145-30164 | None:intergenic | 30.0% |
| ! | TTTTGGTCAAACAAGCTTAT+AGG | - | tig0006328:30194-30213 | Msa1343220:intron | 30.0% |
| TCTGATTCATTCTTGTTAGA+CGG | - | tig0006328:30468-30487 | Msa1343220:intron | 30.0% | |
| !! | TAGACGGAGTTGATAAAATA+AGG | - | tig0006328:30484-30503 | Msa1343220:intron | 30.0% |
| GAAAGTTAAATGCCAAATGA+CGG | - | tig0006328:30731-30750 | Msa1343220:CDS | 30.0% | |
| TGAATAACAAAACCGTCATT+TGG | + | tig0006328:30746-30765 | None:intergenic | 30.0% | |
| ! | AAGTTTTGCTCAAGATTAAC+TGG | + | tig0006328:30790-30809 | None:intergenic | 30.0% |
| AGTTAATCTTGAGCAAAACT+TGG | - | tig0006328:30789-30808 | Msa1343220:CDS | 30.0% | |
| ATCATACTATGAAATACAGG+TGG | - | tig0006328:30824-30843 | Msa1343220:CDS | 30.0% | |
| GAGAACCAAGTAAAAACAAA+AGG | - | tig0006328:30956-30975 | Msa1343220:intron | 30.0% | |
| ATTTGGTTGCCTTATATTCA+AGG | + | tig0006328:31207-31226 | None:intergenic | 30.0% | |
| ! | CAAAGAATGAAGTTGGGTTT+TGG | - | tig0006328:26611-26630 | Msa1343220:three_prime_UTR | 35.0% |
| !!! | AATGAAGTTGGGTTTTGGTT+TGG | - | tig0006328:26616-26635 | Msa1343220:three_prime_UTR | 35.0% |
| !!! | ATGAAGTTGGGTTTTGGTTT+GGG | - | tig0006328:26617-26636 | Msa1343220:three_prime_UTR | 35.0% |
| GAGAGAATTGTAGTAGTTGT+TGG | + | tig0006328:26691-26710 | None:intergenic | 35.0% | |
| TCTTCTTCTTCTTCTTCTTC+AGG | - | tig0006328:26722-26741 | Msa1343220:intron | 35.0% | |
| ! | TTCTTTGATGGCTTCACAAA+AGG | - | tig0006328:26916-26935 | Msa1343220:CDS | 35.0% |
| GTGGAATAAGGTTCAATATC+TGG | + | tig0006328:26974-26993 | None:intergenic | 35.0% | |
| GATATTGAACCTTATTCCAC+TGG | - | tig0006328:26974-26993 | Msa1343220:intron | 35.0% | |
| TGAAACCTTCAAAAAACCAG+TGG | + | tig0006328:26993-27012 | None:intergenic | 35.0% | |
| AGATCTTCACACTATCTACT+GGG | - | tig0006328:27012-27031 | Msa1343220:intron | 35.0% | |
| TTATTAATAGACACGTTGGG+GGG | - | tig0006328:27235-27254 | Msa1343220:intron | 35.0% | |
| GAATTCTACATGAGGCTTAA+AGG | + | tig0006328:27492-27511 | None:intergenic | 35.0% | |
| !! | TGTTTTTATGGGAGCCAATT+TGG | - | tig0006328:27581-27600 | Msa1343220:intron | 35.0% |
| GCATAAAATCAAGGGATAAG+CGG | + | tig0006328:27704-27723 | None:intergenic | 35.0% | |
| GAAAAATCTCCTATTGCTTG+GGG | + | tig0006328:27828-27847 | None:intergenic | 35.0% | |
| CGAAAAATCTCCTATTGCTT+GGG | + | tig0006328:27829-27848 | None:intergenic | 35.0% | |
| TCGAAAAATCTCCTATTGCT+TGG | + | tig0006328:27830-27849 | None:intergenic | 35.0% | |
| !! | CCGAATCATACTTTTTGATC+AGG | - | tig0006328:27862-27881 | Msa1343220:intron | 35.0% |
| ! | TTAGTTTCGAAACTCTAGAG+TGG | - | tig0006328:27885-27904 | Msa1343220:intron | 35.0% |
| AATTAGTAATTCCCAAGAGC+TGG | + | tig0006328:27929-27948 | None:intergenic | 35.0% | |
| AACATTTGGAGATTCCAGAA+TGG | - | tig0006328:28047-28066 | Msa1343220:intron | 35.0% | |
| !!! | ATTGATTGGTTTTATGAGGG+TGG | - | tig0006328:28456-28475 | Msa1343220:intron | 35.0% |
| ! | CATTTTTCTCATGTCAGCTT+GGG | - | tig0006328:28852-28871 | Msa1343220:CDS | 35.0% |
| ! | TCTGGAATAAGATCTCTGAA+TGG | + | tig0006328:28880-28899 | None:intergenic | 35.0% |
| CAGAGATCTTATTCCAGAAA+AGG | - | tig0006328:28882-28901 | Msa1343220:CDS | 35.0% | |
| AGGCTATTACTCACATCTAT+TGG | - | tig0006328:29020-29039 | Msa1343220:intron | 35.0% | |
| CTATTGGCATAAACACTTCT+AGG | - | tig0006328:29036-29055 | Msa1343220:intron | 35.0% | |
| !! | ATTGGTATTGGTAACTGGTA+AGG | + | tig0006328:29110-29129 | None:intergenic | 35.0% |
| TACCAGTTACCAATACCAAT+AGG | - | tig0006328:29110-29129 | Msa1343220:intron | 35.0% | |
| TACCAATAGGTCTTTGTATC+TGG | - | tig0006328:29123-29142 | Msa1343220:intron | 35.0% | |
| AACCAGATACAAAGACCTAT+TGG | + | tig0006328:29128-29147 | None:intergenic | 35.0% | |
| ! | TTTCTTTTTATTCGAGGGGA+TGG | - | tig0006328:29265-29284 | Msa1343220:intron | 35.0% |
| ! | TTCTTTTTATTCGAGGGGAT+GGG | - | tig0006328:29266-29285 | Msa1343220:intron | 35.0% |
| ! | CTTTTGACGGTATCTTCATT+TGG | + | tig0006328:29441-29460 | None:intergenic | 35.0% |
| AATGAAGATACCGTCAAAAG+AGG | - | tig0006328:29441-29460 | Msa1343220:intron | 35.0% | |
| ! | ATCATTGTCTCCTCTTTTGA+CGG | + | tig0006328:29454-29473 | None:intergenic | 35.0% |
| !! | TTTTGGCTGATAAAATGCTG+TGG | - | tig0006328:29516-29535 | Msa1343220:intron | 35.0% |
| TCGGGAAATCAAGAGAAATT+AGG | + | tig0006328:29583-29602 | None:intergenic | 35.0% | |
| ! | TAAAAGGTTTTCCGCAAACA+CGG | + | tig0006328:29790-29809 | None:intergenic | 35.0% |
| AGGTTGACACTAAATAGCAA+TGG | - | tig0006328:29850-29869 | Msa1343220:intron | 35.0% | |
| GGAAAAGAATTTGACAAACC+AGG | - | tig0006328:29905-29924 | Msa1343220:intron | 35.0% | |
| AGATGTAGAAAGAAGAGCAA+TGG | + | tig0006328:29952-29971 | None:intergenic | 35.0% | |
| ! | CAGTAGCTAATAGCTTTTCT+TGG | + | tig0006328:30146-30165 | None:intergenic | 35.0% |
| ! | AGCTTGTTTGACCAAAATAG+AGG | + | tig0006328:30191-30210 | None:intergenic | 35.0% |
| CTATTCTTCCACTTATACTG+CGG | + | tig0006328:30269-30288 | None:intergenic | 35.0% | |
| GCAGTATAAGTGGAAGAATA+GGG | - | tig0006328:30268-30287 | Msa1343220:intron | 35.0% | |
| CAGTATAAGTGGAAGAATAG+GGG | - | tig0006328:30269-30288 | Msa1343220:intron | 35.0% | |
| TGACTTATGAGTGATGTCAA+AGG | - | tig0006328:30377-30396 | Msa1343220:intron | 35.0% | |
| ! | TTTTCTATCAGGCATTTGCA+AGG | - | tig0006328:30406-30425 | Msa1343220:intron | 35.0% |
| AAACCACTATTTCGTCAACA+AGG | - | tig0006328:30434-30453 | Msa1343220:intron | 35.0% | |
| AACCACTATTTCGTCAACAA+GGG | - | tig0006328:30435-30454 | Msa1343220:intron | 35.0% | |
| !!! | TAAGAAGAGAGTGTTGCTTT+TGG | - | tig0006328:30678-30697 | Msa1343220:intron | 35.0% |
| !!! | CTGCACCTTTTGTTTTTACT+TGG | + | tig0006328:30964-30983 | None:intergenic | 35.0% |
| ! | GTAAAAACAAAAGGTGCAGT+TGG | - | tig0006328:30965-30984 | Msa1343220:intron | 35.0% |
| TTTGTTTCCTTGCAGACATA+AGG | + | tig0006328:31016-31035 | None:intergenic | 35.0% | |
| TTCTGTTGTGACAATGATGA+AGG | + | tig0006328:31067-31086 | None:intergenic | 35.0% | |
| ATCCAAACAAAGCCTTAGAG+AGG | + | tig0006328:26757-26776 | None:intergenic | 40.0% | |
| ACCTCCTACTACTTCTTTGA+TGG | - | tig0006328:26904-26923 | Msa1343220:CDS | 40.0% | |
| GAAGCCATCAAAGAAGTAGT+AGG | + | tig0006328:26911-26930 | None:intergenic | 40.0% | |
| ! | GGGTACAAATTTGTGTTGAC+TGG | + | tig0006328:26953-26972 | None:intergenic | 40.0% |
| CAGATCTTCACACTATCTAC+TGG | - | tig0006328:27011-27030 | Msa1343220:intron | 40.0% | |
| TGTATGTAGTTCATCTGTGG+TGG | - | tig0006328:27554-27573 | Msa1343220:intron | 40.0% | |
| !! | TGTGGTGGCTCATGTTTTTA+TGG | - | tig0006328:27569-27588 | Msa1343220:intron | 40.0% |
| !! | GTGGTGGCTCATGTTTTTAT+GGG | - | tig0006328:27570-27589 | Msa1343220:intron | 40.0% |
| TGTTCTGGCCCAGAATATTT+CGG | + | tig0006328:27611-27630 | None:intergenic | 40.0% | |
| CGAGTAATCAGGTTAGAGTT+CGG | + | tig0006328:27679-27698 | None:intergenic | 40.0% | |
| CGAACTCTAACCTGATTACT+CGG | - | tig0006328:27677-27696 | Msa1343220:intron | 40.0% | |
| GAACTCTAACCTGATTACTC+GGG | - | tig0006328:27678-27697 | Msa1343220:intron | 40.0% | |
| ATATTTGTGACTCCAGCTCT+TGG | - | tig0006328:27914-27933 | Msa1343220:intron | 40.0% | |
| TATTTGTGACTCCAGCTCTT+GGG | - | tig0006328:27915-27934 | Msa1343220:intron | 40.0% | |
| ! | TTATGCTCTAAGCAAGCATG+GGG | + | tig0006328:27986-28005 | None:intergenic | 40.0% |
| ! | GTTATGCTCTAAGCAAGCAT+GGG | + | tig0006328:27987-28006 | None:intergenic | 40.0% |
| ! | TGTTATGCTCTAAGCAAGCA+TGG | + | tig0006328:27988-28007 | None:intergenic | 40.0% |
| CTTAGAGCATAACACCACAT+GGG | - | tig0006328:27994-28013 | Msa1343220:intron | 40.0% | |
| GTATGGTGATAAACAACCAG+AGG | + | tig0006328:28087-28106 | None:intergenic | 40.0% | |
| ! | TACAGGTATTTGGTGGATCA+TGG | - | tig0006328:28165-28184 | Msa1343220:intron | 40.0% |
| ! | ACAGGTATTTGGTGGATCAT+GGG | - | tig0006328:28166-28185 | Msa1343220:intron | 40.0% |
| TTAAAAGGAAGATTCCCCAG+AGG | + | tig0006328:28425-28444 | None:intergenic | 40.0% | |
| ! | TCTGGGGAATCTTCCTTTTA+AGG | - | tig0006328:28424-28443 | Msa1343220:intron | 40.0% |
| TAGAATAAGCCTGGAGCTTT+AGG | - | tig0006328:28611-28630 | Msa1343220:intron | 40.0% | |
| CAGATATAACCTAAAGCTCC+AGG | + | tig0006328:28623-28642 | None:intergenic | 40.0% | |
| ! | GCATTTTTCTCATGTCAGCT+TGG | - | tig0006328:28851-28870 | Msa1343220:CDS | 40.0% |
| CTTATTCCAGAAAAGGAGAG+AGG | - | tig0006328:28889-28908 | Msa1343220:intron | 40.0% | |
| ! | AAACATCCTCTCTCCTTTTC+TGG | + | tig0006328:28898-28917 | None:intergenic | 40.0% |
| AAGGAGAGAGGATGTTTCAT+TGG | - | tig0006328:28901-28920 | Msa1343220:intron | 40.0% | |
| !! | GACCTATTGGTATTGGTAAC+TGG | + | tig0006328:29115-29134 | None:intergenic | 40.0% |
| TACCTGACTGGATTATCAGA+TGG | - | tig0006328:29184-29203 | Msa1343220:intron | 40.0% | |
| ! | TCTTTTTATTCGAGGGGATG+GGG | - | tig0006328:29267-29286 | Msa1343220:intron | 40.0% |
| AGCAGTCATCATTTCCCATT+TGG | + | tig0006328:29409-29428 | None:intergenic | 40.0% | |
| CATTCTCAAGACTGCATATC+GGG | + | tig0006328:29601-29620 | None:intergenic | 40.0% | |
| CCATTCTCAAGACTGCATAT+CGG | + | tig0006328:29602-29621 | None:intergenic | 40.0% | |
| CTTGAATTATGCCGTGTTTG+CGG | - | tig0006328:29776-29795 | Msa1343220:CDS | 40.0% | |
| TTTCTCGATTGGGGGATAAA+AGG | + | tig0006328:29806-29825 | None:intergenic | 40.0% | |
| AACCAGGATTTGTACCCTTA+AGG | - | tig0006328:29921-29940 | Msa1343220:CDS | 40.0% | |
| GAGCAATGGATATGCCTTAA+GGG | + | tig0006328:29938-29957 | None:intergenic | 40.0% | |
| AGAGCAATGGATATGCCTTA+AGG | + | tig0006328:29939-29958 | None:intergenic | 40.0% | |
| AAATTGCCTAAGAAAGCGAG+GGG | + | tig0006328:29995-30014 | None:intergenic | 40.0% | |
| CAAATTGCCTAAGAAAGCGA+GGG | + | tig0006328:29996-30015 | None:intergenic | 40.0% | |
| ACAAATTGCCTAAGAAAGCG+AGG | + | tig0006328:29997-30016 | None:intergenic | 40.0% | |
| GGTCAAACAAGCTTATAGGT+CGG | - | tig0006328:30198-30217 | Msa1343220:intron | 40.0% | |
| !! | ACTTATACTGCGGCTTTGTT+TGG | + | tig0006328:30259-30278 | None:intergenic | 40.0% |
| AAACAAAGCCGCAGTATAAG+TGG | - | tig0006328:30258-30277 | Msa1343220:intron | 40.0% | |
| CGCAGTATAAGTGGAAGAAT+AGG | - | tig0006328:30267-30286 | Msa1343220:intron | 40.0% | |
| ATCCCTTGTTGACGAAATAG+TGG | + | tig0006328:30440-30459 | None:intergenic | 40.0% | |
| ATAAAGGGGACTAAAGTGAG+TGG | - | tig0006328:30934-30953 | Msa1343220:CDS | 40.0% | |
| ! | AAACAAAAGGTGCAGTTGGT+TGG | - | tig0006328:30969-30988 | Msa1343220:intron | 40.0% |
| TTTCCTTGCAGACATAAGGA+AGG | + | tig0006328:31012-31031 | None:intergenic | 40.0% | |
| AGGCAACCTTTGCAAAACAT+GGG | + | tig0006328:31047-31066 | None:intergenic | 40.0% | |
| AAGGCAACCTTTGCAAAACA+TGG | + | tig0006328:31048-31067 | None:intergenic | 40.0% | |
| AGGTAACTTCCTCCTCTCTA+AGG | - | tig0006328:26742-26761 | Msa1343220:intron | 45.0% | |
| CAAACAAAGCCTTAGAGAGG+AGG | + | tig0006328:26754-26773 | None:intergenic | 45.0% | |
| !! | CTCCTCTCTAAGGCTTTGTT+TGG | - | tig0006328:26752-26771 | Msa1343220:intron | 45.0% |
| !! | AAGTAGTAGGAGGTACTGAG+TGG | + | tig0006328:26898-26917 | None:intergenic | 45.0% |
| GCCATCAAAGAAGTAGTAGG+AGG | + | tig0006328:26908-26927 | None:intergenic | 45.0% | |
| ACTATCTACTGGGAGCAATC+TGG | - | tig0006328:27022-27041 | Msa1343220:intron | 45.0% | |
| CAAGTACTCACATAGCCAGT+GGG | + | tig0006328:27052-27071 | None:intergenic | 45.0% | |
| ACAAGTACTCACATAGCCAG+TGG | + | tig0006328:27053-27072 | None:intergenic | 45.0% | |
| !! | TCTCTGAAATTGTAGGCGTC+GGG | + | tig0006328:27298-27317 | None:intergenic | 45.0% |
| !! | GTCTCTGAAATTGTAGGCGT+CGG | + | tig0006328:27299-27318 | None:intergenic | 45.0% |
| ATTCTGGGCCAGAACAATCT+CGG | - | tig0006328:27615-27634 | Msa1343220:intron | 45.0% | |
| ATCTCGGCTGGAACAGTATT+TGG | - | tig0006328:27631-27650 | Msa1343220:intron | 45.0% | |
| TCTCGGCTGGAACAGTATTT+GGG | - | tig0006328:27632-27651 | Msa1343220:intron | 45.0% | |
| CAGCCAGTTGTATTCCTACA+TGG | - | tig0006328:27782-27801 | Msa1343220:intron | 45.0% | |
| CCTCCATGTAGGAATACAAC+TGG | + | tig0006328:27788-27807 | None:intergenic | 45.0% | |
| CCAGTTGTATTCCTACATGG+AGG | - | tig0006328:27785-27804 | Msa1343220:intron | 45.0% | |
| ! | TCTCTTTATCAGAGAGGTGC+AGG | - | tig0006328:27950-27969 | Msa1343220:intron | 45.0% |
| ! | CTCTTTATCAGAGAGGTGCA+GGG | - | tig0006328:27951-27970 | Msa1343220:intron | 45.0% |
| GCTTAGAGCATAACACCACA+TGG | - | tig0006328:27993-28012 | Msa1343220:intron | 45.0% | |
| GTCATCAATAAGGTCCCATG+TGG | + | tig0006328:28011-28030 | None:intergenic | 45.0% | |
| TTTGGAGATTCCAGAATGGC+AGG | - | tig0006328:28051-28070 | Msa1343220:intron | 45.0% | |
| TGAAAGATGACCTGCCATTC+TGG | + | tig0006328:28064-28083 | None:intergenic | 45.0% | |
| ! | CAGGTATTTGGTGGATCATG+GGG | - | tig0006328:28167-28186 | Msa1343220:intron | 45.0% |
| ACATGCAACACACCTTGTCT+GGG | + | tig0006328:28226-28245 | None:intergenic | 45.0% | |
| AACATGCAACACACCTTGTC+TGG | + | tig0006328:28227-28246 | None:intergenic | 45.0% | |
| CTCTGATGACATCGAAACTC+AGG | - | tig0006328:28943-28962 | Msa1343220:intron | 45.0% | |
| AGCCATCTGATAATCCAGTC+AGG | + | tig0006328:29189-29208 | None:intergenic | 45.0% | |
| CCGATATGCAGTCTTGAGAA+TGG | - | tig0006328:29599-29618 | Msa1343220:CDS | 45.0% | |
| ! | TGCCTTAAGGGTACAAATCC+TGG | + | tig0006328:29926-29945 | None:intergenic | 45.0% |
| GTGATTTACCTGCACGATTG+TGG | + | tig0006328:30520-30539 | None:intergenic | 45.0% | |
| CCATGCTTTATGAAGATCCC+AGG | + | tig0006328:30639-30658 | None:intergenic | 45.0% | |
| CCTGGGATCTTCATAAAGCA+TGG | - | tig0006328:30636-30655 | Msa1343220:intron | 45.0% | |
| TCTTCATAAAGCATGGCCAG+AGG | - | tig0006328:30643-30662 | Msa1343220:intron | 45.0% | |
| ATACAGGTGGTTTCAGATGC+AGG | - | tig0006328:30837-30856 | Msa1343220:CDS | 45.0% | |
| CATCCTTCCTTATGTCTGCA+AGG | - | tig0006328:31006-31025 | Msa1343220:intron | 45.0% | |
| ! | TCAGCTTTATGCTGGTGGTT+TGG | - | tig0006328:31120-31139 | Msa1343220:CDS | 45.0% |
| GAGCAATCTGGAAATCCCAC+TGG | - | tig0006328:27034-27053 | Msa1343220:intron | 50.0% | |
| ! | ACGCCTTTGATCAGAGGTGT+CGG | + | tig0006328:27146-27165 | None:intergenic | 50.0% |
| TGTTCCAGCCGAGATTGTTC+TGG | + | tig0006328:27626-27645 | None:intergenic | 50.0% | |
| TAGGAATACAACTGGCTGCC+AGG | + | tig0006328:27780-27799 | None:intergenic | 50.0% | |
| ACACCTTGTCTGGGTGAGAT+TGG | + | tig0006328:28217-28236 | None:intergenic | 50.0% | |
| GCTGCTGCAATATACCCTGA+TGG | - | tig0006328:28480-28499 | Msa1343220:intron | 50.0% | |
| CCATTTGGTCCATGCTCTAG+CGG | + | tig0006328:29394-29413 | None:intergenic | 50.0% | |
| CGCTAGAGCATGGACCAAAT+GGG | - | tig0006328:29392-29411 | Msa1343220:intron | 50.0% | |
| TATCGACACCACAATCGTGC+AGG | - | tig0006328:30509-30528 | Msa1343220:intron | 50.0% | |
| GATCCCAGGCTGACATCATA+GGG | + | tig0006328:30625-30644 | None:intergenic | 50.0% | |
| AGATCCCAGGCTGACATCAT+AGG | + | tig0006328:30626-30645 | None:intergenic | 50.0% | |
| ! | CATGGCCAGAGGCAGATTTT+CGG | - | tig0006328:30654-30673 | Msa1343220:intron | 50.0% |
| ! | ATGGCCAGAGGCAGATTTTC+GGG | - | tig0006328:30655-30674 | Msa1343220:intron | 50.0% |
| CTTACCCGAAAATCTGCCTC+TGG | + | tig0006328:30662-30681 | None:intergenic | 50.0% | |
| AGCTATGCCTGGTTCATTGG+CGG | + | tig0006328:30868-30887 | None:intergenic | 50.0% | |
| AGCAGCTATGCCTGGTTCAT+TGG | + | tig0006328:30871-30890 | None:intergenic | 50.0% | |
| ACAAGTTCAGCAGCTATGCC+TGG | + | tig0006328:30879-30898 | None:intergenic | 50.0% | |
| AGGCATAGCTGCTGAACTTG+TGG | - | tig0006328:30878-30897 | Msa1343220:CDS | 50.0% | |
| ! | GTGACGCCCATGTTTTGCAA+AGG | - | tig0006328:31038-31057 | Msa1343220:intron | 50.0% |
| ! | ATCCCAGCTCAGCTTTATGC+TGG | - | tig0006328:31112-31131 | Msa1343220:CDS | 50.0% |
| CACCAGCATAAAGCTGAGCT+GGG | + | tig0006328:31117-31136 | None:intergenic | 50.0% | |
| !! | GAGGTGTCGGTGCTACACAA+TGG | + | tig0006328:27133-27152 | None:intergenic | 55.0% |
| ! | GCACCGACACCTCTGATCAA+AGG | - | tig0006328:27140-27159 | Msa1343220:CDS | 55.0% |
| CCAGACACGCCTTTGATCAG+AGG | + | tig0006328:27152-27171 | None:intergenic | 55.0% | |
| ! | CCTCTGATCAAAGGCGTGTC+TGG | - | tig0006328:27149-27168 | Msa1343220:CDS | 55.0% |
| GATAAGCGGCCCGAGTAATC+AGG | + | tig0006328:27690-27709 | None:intergenic | 55.0% | |
| GTATTCCTACATGGAGGCCC+TGG | - | tig0006328:27791-27810 | Msa1343220:intron | 55.0% | |
| GGGGAACTTCCCCAAGCAAT+AGG | - | tig0006328:27816-27835 | Msa1343220:intron | 55.0% | |
| GGCAGGTCATCTTTCACCTC+TGG | - | tig0006328:28068-28087 | Msa1343220:intron | 55.0% | |
| CAGCCAATCTCACCCAGACA+AGG | - | tig0006328:28211-28230 | Msa1343220:intron | 55.0% | |
| AGGTTACTGGCATCGTCCTC+TGG | - | tig0006328:28406-28425 | Msa1343220:intron | 55.0% | |
| GGTTACTGGCATCGTCCTCT+GGG | - | tig0006328:28407-28426 | Msa1343220:intron | 55.0% | |
| GTTACTGGCATCGTCCTCTG+GGG | - | tig0006328:28408-28427 | Msa1343220:intron | 55.0% | |
| ATTCGAGGGGATGGGGATTC+AGG | - | tig0006328:29274-29293 | Msa1343220:intron | 55.0% | |
| TTCGAGGGGATGGGGATTCA+GGG | - | tig0006328:29275-29294 | Msa1343220:intron | 55.0% | |
| AGTATGCTGCCGCTAGAGCA+TGG | - | tig0006328:29382-29401 | Msa1343220:intron | 55.0% | |
| CCGCTAGAGCATGGACCAAA+TGG | - | tig0006328:29391-29410 | Msa1343220:intron | 55.0% | |
| TCAGAGCCCCTCGCTTTCTT+AGG | - | tig0006328:29986-30005 | Msa1343220:intron | 55.0% | |
| CTGCCCTATGATGTCAGCCT+GGG | - | tig0006328:30619-30638 | Msa1343220:intron | 55.0% | |
| GGACATTCCGCCAATGAACC+AGG | - | tig0006328:30858-30877 | Msa1343220:CDS | 55.0% | |
| CCACCAGCATAAAGCTGAGC+TGG | + | tig0006328:31118-31137 | None:intergenic | 55.0% | |
| ! | CCAGCTCAGCTTTATGCTGG+TGG | - | tig0006328:31115-31134 | Msa1343220:CDS | 55.0% |
| TGGGCCAGAACAATCTCGGC+TGG | - | tig0006328:27619-27638 | Msa1343220:intron | 60.0% | |
| TTCCTACATGGAGGCCCTGG+AGG | - | tig0006328:27794-27813 | Msa1343220:intron | 60.0% | |
| TCCTACATGGAGGCCCTGGA+GGG | - | tig0006328:27795-27814 | Msa1343220:intron | 60.0% | |
| TTGGGGAAGTTCCCCCTCCA+GGG | + | tig0006328:27811-27830 | None:intergenic | 60.0% | |
| GCTGCCCTATGATGTCAGCC+TGG | - | tig0006328:30618-30637 | Msa1343220:intron | 60.0% | |
| CCTACATGGAGGCCCTGGAG+GGG | - | tig0006328:27796-27815 | Msa1343220:intron | 65.0% | |
| CTACATGGAGGCCCTGGAGG+GGG | - | tig0006328:27797-27816 | Msa1343220:intron | 65.0% | |
| CTTGGGGAAGTTCCCCCTCC+AGG | + | tig0006328:27812-27831 | None:intergenic | 65.0% | |
| CCCCTCCAGGGCCTCCATGT+AGG | + | tig0006328:27799-27818 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006328 | gene | 26562 | 31227 | 26562 | ID=Msa1343220;Name=Msa1343220 |
| tig0006328 | mRNA | 26562 | 31227 | 26562 | ID=Msa1343220-mRNA-1;Parent=Msa1343220;Name=Msa1343220-mRNA-1;_AED=0.12;_eAED=0.12;_QI=55|0.90|0.91|1|0.90|0.83|12|250|398 |
| tig0006328 | exon | 26562 | 26740 | 26562 | ID=Msa1343220-mRNA-1:exon:4051;Parent=Msa1343220-mRNA-1 |
| tig0006328 | exon | 26771 | 26946 | 26771 | ID=Msa1343220-mRNA-1:exon:4050;Parent=Msa1343220-mRNA-1 |
| tig0006328 | exon | 27113 | 27187 | 27113 | ID=Msa1343220-mRNA-1:exon:4049;Parent=Msa1343220-mRNA-1 |
| tig0006328 | exon | 27259 | 27372 | 27259 | ID=Msa1343220-mRNA-1:exon:4048;Parent=Msa1343220-mRNA-1 |
| tig0006328 | exon | 28304 | 28405 | 28304 | ID=Msa1343220-mRNA-1:exon:4047;Parent=Msa1343220-mRNA-1 |
| tig0006328 | exon | 28825 | 28904 | 28825 | ID=Msa1343220-mRNA-1:exon:4046;Parent=Msa1343220-mRNA-1 |
| tig0006328 | exon | 29288 | 29381 | 29288 | ID=Msa1343220-mRNA-1:exon:4045;Parent=Msa1343220-mRNA-1 |
| tig0006328 | exon | 29557 | 29619 | 29557 | ID=Msa1343220-mRNA-1:exon:4044;Parent=Msa1343220-mRNA-1 |
| tig0006328 | exon | 29717 | 29827 | 29717 | ID=Msa1343220-mRNA-1:exon:4043;Parent=Msa1343220-mRNA-1 |
| tig0006328 | exon | 29906 | 30004 | 29906 | ID=Msa1343220-mRNA-1:exon:4042;Parent=Msa1343220-mRNA-1 |
| tig0006328 | exon | 30729 | 30955 | 30729 | ID=Msa1343220-mRNA-1:exon:4041;Parent=Msa1343220-mRNA-1 |
| tig0006328 | exon | 31046 | 31227 | 31046 | ID=Msa1343220-mRNA-1:exon:4040;Parent=Msa1343220-mRNA-1 |
| tig0006328 | five_prime_UTR | 31173 | 31227 | 31173 | ID=Msa1343220-mRNA-1:five_prime_utr;Parent=Msa1343220-mRNA-1 |
| tig0006328 | CDS | 31046 | 31172 | 31046 | ID=Msa1343220-mRNA-1:cds;Parent=Msa1343220-mRNA-1 |
| tig0006328 | CDS | 30729 | 30955 | 30729 | ID=Msa1343220-mRNA-1:cds;Parent=Msa1343220-mRNA-1 |
| tig0006328 | CDS | 29906 | 30004 | 29906 | ID=Msa1343220-mRNA-1:cds;Parent=Msa1343220-mRNA-1 |
| tig0006328 | CDS | 29717 | 29827 | 29717 | ID=Msa1343220-mRNA-1:cds;Parent=Msa1343220-mRNA-1 |
| tig0006328 | CDS | 29557 | 29619 | 29557 | ID=Msa1343220-mRNA-1:cds;Parent=Msa1343220-mRNA-1 |
| tig0006328 | CDS | 29288 | 29381 | 29288 | ID=Msa1343220-mRNA-1:cds;Parent=Msa1343220-mRNA-1 |
| tig0006328 | CDS | 28825 | 28904 | 28825 | ID=Msa1343220-mRNA-1:cds;Parent=Msa1343220-mRNA-1 |
| tig0006328 | CDS | 28304 | 28405 | 28304 | ID=Msa1343220-mRNA-1:cds;Parent=Msa1343220-mRNA-1 |
| tig0006328 | CDS | 27259 | 27372 | 27259 | ID=Msa1343220-mRNA-1:cds;Parent=Msa1343220-mRNA-1 |
| tig0006328 | CDS | 27113 | 27187 | 27113 | ID=Msa1343220-mRNA-1:cds;Parent=Msa1343220-mRNA-1 |
| tig0006328 | CDS | 26842 | 26946 | 26842 | ID=Msa1343220-mRNA-1:cds;Parent=Msa1343220-mRNA-1 |
| tig0006328 | three_prime_UTR | 26771 | 26841 | 26771 | ID=Msa1343220-mRNA-1:three_prime_utr;Parent=Msa1343220-mRNA-1 |
| tig0006328 | three_prime_UTR | 26562 | 26740 | 26562 | ID=Msa1343220-mRNA-1:three_prime_utr;Parent=Msa1343220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
