Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343190 | XP_003593347.1 | 96.535 | 404 | 10 | 2 | 1 | 404 | 1 | 400 | 0.0 | 810 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343190 | sp|P93732|PIP_ARATH | 84.244 | 311 | 48 | 1 | 87 | 396 | 66 | 376 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343190 | G7IFC0 | 96.535 | 404 | 10 | 2 | 1 | 404 | 1 | 400 | 0.0 | 810 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0190560 | Msa1343190 | 0.871087 | 8.925202e-67 | -8.615850e-47 |
| Msa1343160 | Msa1343190 | 0.932010 | 1.616017e-94 | -8.615850e-47 |
| Msa1343190 | Msa1343220 | 0.849998 | 2.255258e-60 | -8.615850e-47 |
| Msa1188560 | Msa1343190 | 0.802760 | 4.814078e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343190 | MtrunA17_Chr2g0280211 | 96.535 | 404 | 10 | 2 | 1 | 404 | 1 | 400 | 0.0 | 810 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343190 | AT2G14260.1 | 84.244 | 311 | 48 | 1 | 87 | 396 | 66 | 376 | 0.0 | 565 |
| Msa1343190 | AT2G14260.3 | 84.244 | 311 | 48 | 1 | 87 | 396 | 15 | 325 | 0.0 | 564 |
| Msa1343190 | AT2G14260.2 | 84.244 | 311 | 48 | 1 | 87 | 396 | 15 | 325 | 0.0 | 564 |
| Msa1343190 | AT2G14260.4 | 84.231 | 260 | 40 | 1 | 87 | 345 | 66 | 325 | 9.04e-165 | 467 |
Find 113 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTATTGCATTTCAGTTTC+GGG | 0.206454 | tig0006328:+12730 | None:intergenic |
| CAATCTCTTTCTTCCTTAAA+AGG | 0.212696 | tig0006328:+10844 | None:intergenic |
| GTGGAATAAGGTTCAATATC+TGG | 0.231576 | tig0006328:+12331 | None:intergenic |
| CTATTATTGCATTTCAGTTT+CGG | 0.239400 | tig0006328:+12729 | None:intergenic |
| TAATATAATATACAGGTATT+TGG | 0.271484 | tig0006328:-11126 | Msa1343190:intron |
| CGAAACTGAAATGCAATAAT+AGG | 0.273301 | tig0006328:-12728 | Msa1343190:five_prime_UTR |
| ACCTCCTACTACTTCTTTGA+TGG | 0.279710 | tig0006328:-12398 | Msa1343190:CDS |
| AACATGCTACACACCTTGTC+TGG | 0.280322 | tig0006328:+11057 | None:intergenic |
| TAGACGGAGTTGATAAAATA+AGG | 0.294530 | tig0006328:-8751 | Msa1343190:CDS |
| CAAAGAATGAAGTTGGGTTT+TGG | 0.295643 | tig0006328:-12691 | Msa1343190:exon |
| AAAATTACTCCTTGAATATA+AGG | 0.299469 | tig0006328:-8040 | Msa1343190:three_prime_UTR |
| TGAAAGATGACCTGCCATTC+TGG | 0.315372 | tig0006328:+11220 | None:intergenic |
| GGGGAACTTCCCCGAGTAAT+AGG | 0.329132 | tig0006328:-11464 | Msa1343190:CDS |
| AGTATGATTCGGTAAAATTC+AGG | 0.352593 | tig0006328:+11429 | None:intergenic |
| TAAGGAAGAAAGAGATTGAT+TGG | 0.356029 | tig0006328:-10839 | Msa1343190:CDS |
| AGCAGCTATGCCTGGTTCAT+TGG | 0.356957 | tig0006328:+8367 | None:intergenic |
| AGATCCCAGGCTGACATCAT+AGG | 0.366457 | tig0006328:+8612 | None:intergenic |
| AGGTTACTGGCATCGTCCTC+AGG | 0.380001 | tig0006328:-10875 | Msa1343190:CDS |
| AGCAGTCATCATTTCCCATT+TGG | 0.384899 | tig0006328:+9831 | None:intergenic |
| AAAACAAAATCAAGAATAAA+GGG | 0.386373 | tig0006328:-8316 | Msa1343190:CDS |
| TCAGCTTTATGCTGGTGGTT+TGG | 0.388346 | tig0006328:-8115 | Msa1343190:three_prime_UTR |
| CCGAATCATACTATTTGATC+AGG | 0.399067 | tig0006328:-11418 | Msa1343190:intron |
| CCGCTAGAGCATGGACCAAA+TGG | 0.402654 | tig0006328:-9846 | Msa1343190:CDS |
| TTCAGTTTCGGGTTTGTTAG+TGG | 0.410958 | tig0006328:+12741 | None:intergenic |
| TTAATAACAAAGAATGAAGT+TGG | 0.411395 | tig0006328:-12698 | Msa1343190:exon |
| CAGATCTTCACACTATCTAC+TGG | 0.413115 | tig0006328:-12291 | Msa1343190:CDS |
| ATCCCTTGTTGACGAAATAG+TGG | 0.419846 | tig0006328:+8798 | None:intergenic |
| TACAGGTATTTGGTGGATCA+TGG | 0.425085 | tig0006328:-11116 | Msa1343190:intron |
| ACTATCTACTGGGAGCAATC+TGG | 0.425472 | tig0006328:-12280 | Msa1343190:CDS |
| GCTGCCCTATGATGTCAGCC+TGG | 0.426579 | tig0006328:-8617 | Msa1343190:CDS |
| CAGAGATCTTATTCCAGAAA+AGG | 0.427576 | tig0006328:-10399 | Msa1343190:CDS |
| AGAGAATTGTAGTAGTTGTT+GGG | 0.432876 | tig0006328:+12615 | None:intergenic |
| GTAGTATTAGTTGTTGAGAA+TGG | 0.438233 | tig0006328:+12655 | None:intergenic |
| GAGAGAATTGTAGTAGTTGT+TGG | 0.439638 | tig0006328:+12614 | None:intergenic |
| TCTCTTTACCAGAGAGGTGC+GGG | 0.441056 | tig0006328:-11331 | Msa1343190:intron |
| CCACCAGCATAAAGCTGAGC+TGG | 0.451180 | tig0006328:+8120 | None:intergenic |
| TTCTATTGTGACAATGATGA+AGG | 0.451250 | tig0006328:+8171 | None:intergenic |
| ATTTGGTTGCCTTATATTCA+AGG | 0.453747 | tig0006328:+8031 | None:intergenic |
| ACACCTTGTCTGGGTGAGAT+TGG | 0.456816 | tig0006328:+11067 | None:intergenic |
| TTCTTTGATGGCTTCACAAA+AGG | 0.457949 | tig0006328:-12386 | Msa1343190:CDS |
| CGCTAGAGCATGGACCAAAT+GGG | 0.461856 | tig0006328:-9845 | Msa1343190:CDS |
| ATATGCAGTAAGAAAGAACT+TGG | 0.474476 | tig0006328:-12476 | Msa1343190:intron |
| GATATTGAACCTTATTCCAC+TGG | 0.477354 | tig0006328:-12328 | Msa1343190:CDS |
| TCAGTTTCGGGTTTGTTAGT+GGG | 0.482231 | tig0006328:+12742 | None:intergenic |
| CCTGATCAAATAGTATGATT+CGG | 0.483407 | tig0006328:+11418 | None:intergenic |
| CTACATGGAGGCCCTGGAGG+GGG | 0.488526 | tig0006328:-11483 | Msa1343190:CDS |
| ACAGGTATTTGGTGGATCAT+GGG | 0.494915 | tig0006328:-11115 | Msa1343190:intron |
| TAATAACAAAGAATGAAGTT+GGG | 0.495195 | tig0006328:-12697 | Msa1343190:exon |
| CCAGCTCAGCTTTATGCTGG+TGG | 0.497912 | tig0006328:-8120 | Msa1343190:three_prime_UTR |
| ATACAGGTGGTTTCAGATGC+AGG | 0.499919 | tig0006328:-8398 | Msa1343190:intron |
| TTCCTACATGGAGGCCCTGG+AGG | 0.504186 | tig0006328:-11486 | Msa1343190:CDS |
| ATCCCAGCTCAGCTTTATGC+TGG | 0.504560 | tig0006328:-8123 | Msa1343190:three_prime_UTR |
| AAACAAAAGGTGCAGTTGGT+TGG | 0.509162 | tig0006328:-8266 | Msa1343190:three_prime_UTR |
| TGGAATAAGGTTCAATATCT+GGG | 0.511220 | tig0006328:+12332 | None:intergenic |
| CAGCCAGTTGTATTCCTACA+TGG | 0.513350 | tig0006328:-11498 | Msa1343190:CDS |
| CCTCCATGTAGGAATACAAC+TGG | 0.513574 | tig0006328:+11495 | None:intergenic |
| TCTGATTCATTCTTGTTAGA+CGG | 0.517803 | tig0006328:-8767 | Msa1343190:CDS |
| GTATTCCTACATGGAGGCCC+TGG | 0.518972 | tig0006328:-11489 | Msa1343190:CDS |
| CTGCCCTATGATGTCAGCCT+GGG | 0.519055 | tig0006328:-8616 | Msa1343190:CDS |
| TTTGCAGATTCCAGAATGGC+AGG | 0.525461 | tig0006328:-11230 | Msa1343190:intron |
| AATGAAGATACCGTCAAAAG+AGG | 0.525628 | tig0006328:-9796 | Msa1343190:CDS |
| AGCTATGCCTGGTTCATTGG+CGG | 0.526445 | tig0006328:+8370 | None:intergenic |
| ACAAGTTCAGCAGCTATGCC+TGG | 0.527402 | tig0006328:+8359 | None:intergenic |
| GAAGCCATCAAAGAAGTAGT+AGG | 0.528019 | tig0006328:+12394 | None:intergenic |
| TATAATATACAGGTATTTGG+TGG | 0.536899 | tig0006328:-11123 | Msa1343190:intron |
| AACATTTGCAGATTCCAGAA+TGG | 0.539684 | tig0006328:-11234 | Msa1343190:CDS |
| GATCCCAGGCTGACATCATA+GGG | 0.540983 | tig0006328:+8613 | None:intergenic |
| TCCTACATGGAGGCCCTGGA+GGG | 0.541912 | tig0006328:-11485 | Msa1343190:CDS |
| CTTACCCGAAAATCTGCCTC+TGG | 0.542931 | tig0006328:+8576 | None:intergenic |
| GGACATTCCGCCAATGAACC+AGG | 0.545853 | tig0006328:-8377 | Msa1343190:CDS |
| CTCTGATGACATCGAAACTC+AGG | 0.546649 | tig0006328:-10336 | Msa1343190:intron |
| GGGTACAAATTTGTGTTGAC+TGG | 0.549973 | tig0006328:+12352 | None:intergenic |
| AGTATGCTGCCGCTAGAGCA+TGG | 0.551887 | tig0006328:-9855 | Msa1343190:CDS |
| TCTGGAATAAGATCTCTGAA+TGG | 0.552392 | tig0006328:+10404 | None:intergenic |
| GGTTACTGGCATCGTCCTCA+GGG | 0.553143 | tig0006328:-10874 | Msa1343190:CDS |
| ACATGCTACACACCTTGTCT+GGG | 0.557071 | tig0006328:+11058 | None:intergenic |
| CCTACATGGAGGCCCTGGAG+GGG | 0.561466 | tig0006328:-11484 | Msa1343190:CDS |
| AGGCATAGCTGCTGAACTTG+TGG | 0.566543 | tig0006328:-8357 | Msa1343190:CDS |
| TTTCCTTGCAGACATAAGGA+AGG | 0.574571 | tig0006328:+8226 | None:intergenic |
| CACCAGCATAAAGCTGAGCT+GGG | 0.575185 | tig0006328:+8121 | None:intergenic |
| CCCCTCCAGGGCCTCCATGT+AGG | 0.577239 | tig0006328:+11484 | None:intergenic |
| AAACCACTATTTCGTCAACA+AGG | 0.580929 | tig0006328:-8801 | Msa1343190:CDS |
| GTGATTTACCTGCACGATTG+TGG | 0.594189 | tig0006328:+8718 | None:intergenic |
| CCACGCTTTATGAAGATCCC+AGG | 0.594872 | tig0006328:+8599 | None:intergenic |
| CAGGTATTTGGTGGATCATG+GGG | 0.595807 | tig0006328:-11114 | Msa1343190:CDS |
| TATCGACACCACAATCGTGC+AGG | 0.597111 | tig0006328:-8726 | Msa1343190:intron |
| AACCACTATTTCGTCAACAA+GGG | 0.605554 | tig0006328:-8800 | Msa1343190:CDS |
| TGTTATGCTCTAAGCAAGCA+TGG | 0.608642 | tig0006328:+11296 | None:intergenic |
| AGATCTTCACACTATCTACT+GGG | 0.609166 | tig0006328:-12290 | Msa1343190:CDS |
| GTTATGCTCTAAGCAAGCAT+GGG | 0.610694 | tig0006328:+11297 | None:intergenic |
| GCCATCAAAGAAGTAGTAGG+AGG | 0.612123 | tig0006328:+12397 | None:intergenic |
| TTCTCTTTACCAGAGAGGTG+CGG | 0.613919 | tig0006328:-11332 | Msa1343190:intron |
| AAAATAGTCTAATACCATCA+GGG | 0.617415 | tig0006328:+10787 | None:intergenic |
| AAGTAGTAGGAGGTACTGAG+TGG | 0.619050 | tig0006328:+12407 | None:intergenic |
| CAAGTACTCACATAGCCAGT+GGG | 0.627218 | tig0006328:+12253 | None:intergenic |
| CTTATTCCAGAAAAGGAGAG+AGG | 0.629277 | tig0006328:-10392 | Msa1343190:CDS |
| GAGCAATCTGGAAATCCCAC+TGG | 0.629628 | tig0006328:-12268 | Msa1343190:CDS |
| CTCTTTACCAGAGAGGTGCG+GGG | 0.631774 | tig0006328:-11330 | Msa1343190:intron |
| CCATTTGGTCCATGCTCTAG+CGG | 0.635703 | tig0006328:+9846 | None:intergenic |
| CAGCCAATCTCACCCAGACA+AGG | 0.636145 | tig0006328:-11070 | Msa1343190:intron |
| ATAAAGGGGACTAAAGTGAG+TGG | 0.641202 | tig0006328:-8301 | Msa1343190:exon |
| AAACAAAATCAAGAATAAAG+GGG | 0.642276 | tig0006328:-8315 | Msa1343190:CDS |
| GCTTAGAGCATAACACCACA+TGG | 0.643086 | tig0006328:-11288 | Msa1343190:CDS |
| CCTGGGATCTTCATAAAGCG+TGG | 0.651742 | tig0006328:-8599 | Msa1343190:CDS |
| TCTTCATAAAGCGTGGCCAG+AGG | 0.656424 | tig0006328:-8592 | Msa1343190:CDS |
| GCTGCTGCAATATACCCTGA+TGG | 0.658878 | tig0006328:-10801 | Msa1343190:intron |
| ACAAGTACTCACATAGCCAG+TGG | 0.664459 | tig0006328:+12252 | None:intergenic |
| TTATGCTCTAAGCAAGCATG+GGG | 0.676961 | tig0006328:+11298 | None:intergenic |
| CCAGTTGTATTCCTACATGG+AGG | 0.687512 | tig0006328:-11495 | Msa1343190:CDS |
| GTCATCAATAAGGTCCCATG+TGG | 0.703571 | tig0006328:+11273 | None:intergenic |
| CTTAGAGCATAACACCACAT+GGG | 0.720902 | tig0006328:-11287 | Msa1343190:CDS |
| GTTACTGGCATCGTCCTCAG+GGG | 0.725237 | tig0006328:-10873 | Msa1343190:CDS |
| TTAAAAGGAAGATTCCCCTG+AGG | 0.766974 | tig0006328:+10859 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAAATCAAGAATAA+AGG | - | tig0006328:12465-12484 | Msa1343190:CDS | 15.0% |
| !! | AAAACAAAATCAAGAATAAA+GGG | - | tig0006328:12466-12485 | Msa1343190:CDS | 15.0% |
| !!! | AATCTGAATTTTGATGTAAT+AGG | + | tig0006328:12101-12120 | None:intergenic | 20.0% |
| !! | AAACAAAATCAAGAATAAAG+GGG | - | tig0006328:12467-12486 | Msa1343190:CDS | 20.0% |
| !! | AAAATTACTCCTTGAATATA+AGG | - | tig0006328:12742-12761 | Msa1343190:five_prime_UTR | 20.0% |
| !!! | TGAATTTTGATGTAATAGGA+TGG | + | tig0006328:12097-12116 | None:intergenic | 25.0% |
| ! | ATCTTCAATCTTGACTTTAT+AGG | - | tig0006328:12127-12146 | Msa1343190:intron | 25.0% |
| ! | TCTTCAATCTTGACTTTATA+GGG | - | tig0006328:12128-12147 | Msa1343190:intron | 25.0% |
| !! | TTTGGCATTTAACTTTCAAT+TGG | + | tig0006328:12275-12294 | None:intergenic | 25.0% |
| ! | TGAATCATACTATGAAATAC+AGG | - | tig0006328:12368-12387 | Msa1343190:CDS | 25.0% |
| TCTGATTCATTCTTGTTAGA+CGG | - | tig0006328:12015-12034 | Msa1343190:intron | 30.0% | |
| !! | TAGACGGAGTTGATAAAATA+AGG | - | tig0006328:12031-12050 | Msa1343190:intron | 30.0% |
| GAAAGTTAAATGCCAAATGA+CGG | - | tig0006328:12278-12297 | Msa1343190:CDS | 30.0% | |
| TGAATAACAAAACCGTCATT+TGG | + | tig0006328:12293-12312 | None:intergenic | 30.0% | |
| ! | AAGTTTTGCTCAAGATTAAC+TGG | + | tig0006328:12337-12356 | None:intergenic | 30.0% |
| AGTTAATCTTGAGCAAAACT+TGG | - | tig0006328:12336-12355 | Msa1343190:CDS | 30.0% | |
| ATCATACTATGAAATACAGG+TGG | - | tig0006328:12371-12390 | Msa1343190:CDS | 30.0% | |
| GACAACCAAGTAAAAACAAA+AGG | - | tig0006328:12503-12522 | Msa1343190:intron | 30.0% | |
| TTTATTTCCTTGCAGACATA+AGG | + | tig0006328:12563-12582 | None:intergenic | 30.0% | |
| TTCTATTGTGACAATGATGA+AGG | + | tig0006328:12614-12633 | None:intergenic | 30.0% | |
| ATTTGGTTGCCTTATATTCA+AGG | + | tig0006328:12754-12773 | None:intergenic | 30.0% | |
| AACCACTATTTCGTCAACAA+GGG | - | tig0006328:11982-12001 | Msa1343190:intron | 35.0% | |
| !!! | TAAGAAGAGAGTGTTGCTTT+TGG | - | tig0006328:12225-12244 | Msa1343190:intron | 35.0% |
| !!! | CTGCACCTTTTGTTTTTACT+TGG | + | tig0006328:12511-12530 | None:intergenic | 35.0% |
| ! | GTAAAAACAAAAGGTGCAGT+TGG | - | tig0006328:12512-12531 | Msa1343190:intron | 35.0% |
| !! | TCAGTTTCGGGTTTGTTAGT+GGG | + | tig0006328:8043-8062 | None:intergenic | 40.0% |
| ATCCCTTGTTGACGAAATAG+TGG | + | tig0006328:11987-12006 | None:intergenic | 40.0% | |
| ATAAAGGGGACTAAAGTGAG+TGG | - | tig0006328:12481-12500 | Msa1343190:intron | 40.0% | |
| ! | AAACAAAAGGTGCAGTTGGT+TGG | - | tig0006328:12516-12535 | Msa1343190:intron | 40.0% |
| TTTCCTTGCAGACATAAGGA+AGG | + | tig0006328:12559-12578 | None:intergenic | 40.0% | |
| !! | TTCAGTTTCGGGTTTGTTAG+TGG | + | tig0006328:8044-8063 | None:intergenic | 40.AACGGTTAAGAAAGATAATG% |
| GTGATTTACCTGCACGATTG+TGG | + | tig0006328:12067-12086 | None:intergenic | 45.0% | |
| ATACAGGTGGTTTCAGATGC+AGG | - | tig0006328:12384-12403 | Msa1343190:CDS | 45.0% | |
| CATCCTTCCTTATGTCTGCA+AGG | - | tig0006328:12553-12572 | Msa1343190:intron | 45.0% | |
| ! | GTGACGCTCATGTTTTGCAA+AGG | - | tig0006328:12585-12604 | Msa1343190:CDS | 45.0% |
| ! | TCAGCTTTATGCTGGTGGTT+TGG | - | tig0006328:12667-12686 | Msa1343190:CDS | 45.0% |
| TATCGACACCACAATCGTGC+AGG | - | tig0006328:12056-12075 | Msa1343190:intron | 50.0% | |
| GATCCCAGGCTGACATCATA+GGG | + | tig0006328:12172-12191 | None:intergenic | 50.0% | |
| AGATCCCAGGCTGACATCAT+AGG | + | tig0006328:12173-12192 | None:intergenic | 50.0% | |
| CCACGCTTTATGAAGATCCC+AGG | + | tig0006328:12186-12205 | None:intergenic | 50.0% | |
| CCTGGGATCTTCATAAAGCG+TGG | - | tig0006328:12183-12202 | Msa1343190:intron | 50.0% | |
| TCTTCATAAAGCGTGGCCAG+AGG | - | tig0006328:12190-12209 | Msa1343190:intron | 50.0% | |
| CTTACCCGAAAATCTGCCTC+TGG | + | tig0006328:12209-12228 | None:intergenic | 50.0% | |
| AGCTATGCCTGGTTCATTGG+CGG | + | tig0006328:12415-12434 | None:intergenic | 50.0% | |
| AGCAGCTATGCCTGGTTCAT+TGG | + | tig0006328:12418-12437 | None:intergenic | 50.0% | |
| ACAAGTTCAGCAGCTATGCC+TGG | + | tig0006328:12426-12445 | None:intergenic | 50.0% | |
| AGGCATAGCTGCTGAACTTG+TGG | - | tig0006328:12425-12444 | Msa1343190:CDS | 50.0% | |
| ! | ATCCCAGCTCAGCTTTATGC+TGG | - | tig0006328:12659-12678 | Msa1343190:CDS | 50.0% |
| CACCAGCATAAAGCTGAGCT+GGG | + | tig0006328:12664-12683 | None:intergenic | 50.0% | |
| CTGCCCTATGATGTCAGCCT+GGG | - | tig0006328:12166-12185 | Msa1343190:intron | 55.0% | |
| ! | CGTGGCCAGAGGCAGATTTT+CGG | - | tig0006328:12201-12220 | Msa1343190:intron | 55.0% |
| ! | GTGGCCAGAGGCAGATTTTC+GGG | - | tig0006328:12202-12221 | Msa1343190:intron | 55.0% |
| GGACATTCCGCCAATGAACC+AGG | - | tig0006328:12405-12424 | Msa1343190:CDS | 55.0% | |
| CCACCAGCATAAAGCTGAGC+TGG | + | tig0006328:12665-12684 | None:intergenic | 55.0% | |
| ! | CCAGCTCAGCTTTATGCTGG+TGG | - | tig0006328:12662-12681 | Msa1343190:CDS | 55.0% |
| GCTGCCCTATGATGTCAGCC+TGG | - | tig0006328:12165-12184 | Msa1343190:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006328 | gene | 8030 | 12774 | 8030 | ID=Msa1343190;Name=Msa1343190 |
| tig0006328 | mRNA | 8030 | 12774 | 8030 | ID=Msa1343190-mRNA-1;Parent=Msa1343190;Name=Msa1343190-mRNA-1;_AED=0.12;_eAED=0.12;_QI=67|1|1|1|0.90|0.83|12|250|404 |
| tig0006328 | exon | 8030 | 8208 | 8030 | ID=Msa1343190-mRNA-1:exon:4063;Parent=Msa1343190-mRNA-1 |
| tig0006328 | exon | 8239 | 8414 | 8239 | ID=Msa1343190-mRNA-1:exon:4062;Parent=Msa1343190-mRNA-1 |
| tig0006328 | exon | 8581 | 8655 | 8581 | ID=Msa1343190-mRNA-1:exon:4061;Parent=Msa1343190-mRNA-1 |
| tig0006328 | exon | 8727 | 8840 | 8727 | ID=Msa1343190-mRNA-1:exon:4060;Parent=Msa1343190-mRNA-1 |
| tig0006328 | exon | 9774 | 9875 | 9774 | ID=Msa1343190-mRNA-1:exon:4059;Parent=Msa1343190-mRNA-1 |
| tig0006328 | exon | 10337 | 10434 | 10337 | ID=Msa1343190-mRNA-1:exon:4058;Parent=Msa1343190-mRNA-1 |
| tig0006328 | exon | 10802 | 10895 | 10802 | ID=Msa1343190-mRNA-1:exon:4057;Parent=Msa1343190-mRNA-1 |
| tig0006328 | exon | 11071 | 11133 | 11071 | ID=Msa1343190-mRNA-1:exon:4056;Parent=Msa1343190-mRNA-1 |
| tig0006328 | exon | 11231 | 11341 | 11231 | ID=Msa1343190-mRNA-1:exon:4055;Parent=Msa1343190-mRNA-1 |
| tig0006328 | exon | 11419 | 11517 | 11419 | ID=Msa1343190-mRNA-1:exon:4054;Parent=Msa1343190-mRNA-1 |
| tig0006328 | exon | 12264 | 12490 | 12264 | ID=Msa1343190-mRNA-1:exon:4053;Parent=Msa1343190-mRNA-1 |
| tig0006328 | exon | 12581 | 12774 | 12581 | ID=Msa1343190-mRNA-1:exon:4052;Parent=Msa1343190-mRNA-1 |
| tig0006328 | five_prime_UTR | 12708 | 12774 | 12708 | ID=Msa1343190-mRNA-1:five_prime_utr;Parent=Msa1343190-mRNA-1 |
| tig0006328 | CDS | 12581 | 12707 | 12581 | ID=Msa1343190-mRNA-1:cds;Parent=Msa1343190-mRNA-1 |
| tig0006328 | CDS | 12264 | 12490 | 12264 | ID=Msa1343190-mRNA-1:cds;Parent=Msa1343190-mRNA-1 |
| tig0006328 | CDS | 11419 | 11517 | 11419 | ID=Msa1343190-mRNA-1:cds;Parent=Msa1343190-mRNA-1 |
| tig0006328 | CDS | 11231 | 11341 | 11231 | ID=Msa1343190-mRNA-1:cds;Parent=Msa1343190-mRNA-1 |
| tig0006328 | CDS | 11071 | 11133 | 11071 | ID=Msa1343190-mRNA-1:cds;Parent=Msa1343190-mRNA-1 |
| tig0006328 | CDS | 10802 | 10895 | 10802 | ID=Msa1343190-mRNA-1:cds;Parent=Msa1343190-mRNA-1 |
| tig0006328 | CDS | 10337 | 10434 | 10337 | ID=Msa1343190-mRNA-1:cds;Parent=Msa1343190-mRNA-1 |
| tig0006328 | CDS | 9774 | 9875 | 9774 | ID=Msa1343190-mRNA-1:cds;Parent=Msa1343190-mRNA-1 |
| tig0006328 | CDS | 8727 | 8840 | 8727 | ID=Msa1343190-mRNA-1:cds;Parent=Msa1343190-mRNA-1 |
| tig0006328 | CDS | 8581 | 8655 | 8581 | ID=Msa1343190-mRNA-1:cds;Parent=Msa1343190-mRNA-1 |
| tig0006328 | CDS | 8310 | 8414 | 8310 | ID=Msa1343190-mRNA-1:cds;Parent=Msa1343190-mRNA-1 |
| tig0006328 | three_prime_UTR | 8239 | 8309 | 8239 | ID=Msa1343190-mRNA-1:three_prime_utr;Parent=Msa1343190-mRNA-1 |
| tig0006328 | three_prime_UTR | 8030 | 8208 | 8030 | ID=Msa1343190-mRNA-1:three_prime_utr;Parent=Msa1343190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
