Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344440 | XP_013469974.1 | 92.347 | 196 | 10 | 4 | 1 | 191 | 3 | 198 | 6.80e-115 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344440 | sp|Q8L9K4|SOFL5_ARATH | 38.953 | 172 | 82 | 8 | 9 | 169 | 5 | 164 | 1.41e-19 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344440 | A0A072VQE3 | 92.347 | 196 | 10 | 4 | 1 | 191 | 3 | 198 | 3.25e-115 | 335 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0135990 | Msa1344440 | 0.801393 | 9.195949e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344440 | MtrunA17_Chr1g0207011 | 92.347 | 196 | 10 | 4 | 1 | 191 | 3 | 198 | 6.25e-119 | 335 |
| Msa1344440 | MtrunA17_Chr5g0393821 | 49.215 | 191 | 82 | 9 | 1 | 187 | 1 | 180 | 9.33e-42 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344440 | AT4G33800.2 | 38.953 | 172 | 82 | 8 | 9 | 169 | 5 | 164 | 1.44e-20 | 84.3 |
| Msa1344440 | AT4G33800.1 | 38.953 | 172 | 82 | 8 | 9 | 169 | 5 | 164 | 1.44e-20 | 84.3 |
Find 57 sgRNAs with CRISPR-Local
Find 381 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACATGTTCATTATCCTTT+AGG | 0.222495 | tig0006807:+49206 | Msa1344430:five_prime_UTR |
| ATGGTTTCTGATGCTTCTTC+TGG | 0.266605 | tig0006807:-55364 | Msa1344440:CDS |
| AGCACCACCAACATGGAATT+TGG | 0.289275 | tig0006807:+49379 | Msa1344430:CDS |
| TCATACCAGGAAGAACAATT+TGG | 0.315479 | tig0006807:-54847 | Msa1344440:CDS |
| ACAAAGTTATGTAGGAAATA+TGG | 0.330154 | tig0006807:-55009 | Msa1344440:CDS |
| TATGAAAACACTAGATTCAT+AGG | 0.343147 | tig0006807:-55469 | Msa1344440:CDS |
| GAAGAGGCGATGAGTTCTAT+AGG | 0.348824 | tig0006807:+49256 | Msa1344430:exon |
| TATAGGGCAAACCATGTTAA+TGG | 0.362210 | tig0006807:+49273 | Msa1344430:CDS |
| TATTTCCTACATAACTTTGT+TGG | 0.375448 | tig0006807:+55012 | None:intergenic |
| TGTAGTAGTGGATGTGAGTC+AGG | 0.376527 | tig0006807:-55517 | Msa1344440:CDS |
| CTTCTGAATGTATGCGTGTC+TGG | 0.391835 | tig0006807:+49537 | Msa1344430:intron |
| AGGAGTGGAAGATTTGTCTA+TGG | 0.397750 | tig0006807:-55383 | Msa1344440:CDS |
| AAATTGTTCTTCCTGGTATG+AGG | 0.406008 | tig0006807:+54849 | None:intergenic |
| GCTTAATAAACTTATCCTAA+AGG | 0.408244 | tig0006807:-49221 | Msa1344440:three_prime_UTR |
| TCTTTGTTTAGCAGCTGGTA+TGG | 0.422441 | tig0006807:-54692 | Msa1344440:intron |
| AGGGTCTTGCGTTGCGGTTG+CGG | 0.425612 | tig0006807:-49434 | Msa1344440:three_prime_UTR |
| GGTGGAACTGAAGGGTACTA+TGG | 0.434994 | tig0006807:-55448 | Msa1344440:CDS |
| CCTTCCAAATTCCATGTTGG+TGG | 0.438290 | tig0006807:-49383 | Msa1344440:three_prime_UTR |
| TTGGTGGTGCTTCTCAAAGT+TGG | 0.441638 | tig0006807:-49367 | Msa1344440:three_prime_UTR |
| TGGTGGTGCTTCTCAAAGTT+GGG | 0.449042 | tig0006807:-49366 | Msa1344440:three_prime_UTR |
| AAGAGGCGATGAGTTCTATA+GGG | 0.479187 | tig0006807:+49257 | Msa1344430:exon |
| AGAAGCAATGTCCTTGACTC+AGG | 0.482163 | tig0006807:-49454 | Msa1344440:three_prime_UTR |
| CAGAAGTGATGACGCTACAT+AGG | 0.486769 | tig0006807:-49520 | Msa1344440:three_prime_UTR |
| GCAGTGTCATGAAGAAAAGA+AGG | 0.507146 | tig0006807:+55208 | None:intergenic |
| ACAAACCAACAAAGTTATGT+AGG | 0.515352 | tig0006807:-55017 | Msa1344440:CDS |
| TTGGTTTGTCCCAACAACAT+TGG | 0.519643 | tig0006807:+55031 | None:intergenic |
| TCTCCTTCCAAATTCCATGT+TGG | 0.526459 | tig0006807:-49386 | Msa1344440:three_prime_UTR |
| GGTACAACGAAACAGAAAGT+TGG | 0.538699 | tig0006807:-55271 | Msa1344440:CDS |
| GTTAATGGCACTAACAGTTA+CGG | 0.549686 | tig0006807:+49288 | Msa1344430:CDS |
| AACTGTTAGTGCCATTAACA+TGG | 0.549756 | tig0006807:-49284 | Msa1344440:three_prime_UTR |
| GTATGCATCATCCAATGTGC+AGG | 0.549946 | tig0006807:+49318 | Msa1344430:CDS |
| AGAAGTGATGACGCTACATA+GGG | 0.557585 | tig0006807:-49519 | Msa1344440:three_prime_UTR |
| TGACTCAGGGTCTTGCGTTG+CGG | 0.557938 | tig0006807:-49440 | Msa1344440:three_prime_UTR |
| ACATCATCATGTGGAAGATG+TGG | 0.558107 | tig0006807:+55337 | None:intergenic |
| TGCTATTGAAGTTGTTGCAG+TGG | 0.566819 | tig0006807:-54637 | Msa1344440:three_prime_UTR |
| AGATTCATAGGTGGAACTGA+AGG | 0.568350 | tig0006807:-55457 | Msa1344440:CDS |
| GTCACAAATGAGTATTCTGA+AGG | 0.574749 | tig0006807:-55403 | Msa1344440:CDS |
| AACATGGAATTTGGAAGGAG+AGG | 0.586422 | tig0006807:+49388 | Msa1344430:CDS |
| ATTATGAACTGCCTGCACAT+TGG | 0.588435 | tig0006807:-49329 | Msa1344440:three_prime_UTR |
| AAATGAGTATTCTGAAGGAG+TGG | 0.595088 | tig0006807:-55398 | Msa1344440:CDS |
| TTGTTTAGCAGCTGGTATGG+AGG | 0.596105 | tig0006807:-54689 | Msa1344440:intron |
| TTTGATTCTGAATGTAGTAG+TGG | 0.600879 | tig0006807:-55529 | Msa1344440:CDS |
| GAAGCAATGTCCTTGACTCA+GGG | 0.617035 | tig0006807:-49453 | Msa1344440:three_prime_UTR |
| CCACCAACATGGAATTTGGA+AGG | 0.619705 | tig0006807:+49383 | Msa1344430:CDS |
| GTAGGGAAAATCCTCATACC+AGG | 0.622430 | tig0006807:-54860 | Msa1344440:intron |
| CAACGCAAGACCCTGAGTCA+AGG | 0.623179 | tig0006807:+49443 | Msa1344430:CDS |
| TTTGAGAAGCACCACCAACA+TGG | 0.627251 | tig0006807:+49372 | Msa1344430:CDS |
| TGCGGTTGCGGCAATAACAG+TGG | 0.633822 | tig0006807:-49422 | Msa1344440:three_prime_UTR |
| TGCAACAACTTCAATAGCAG+AGG | 0.636583 | tig0006807:+54641 | None:intergenic |
| TCATCATGTGGAAGATGTGG+AGG | 0.636849 | tig0006807:+55340 | None:intergenic |
| TTGAAGTAAACATCATCATG+TGG | 0.637487 | tig0006807:+55328 | None:intergenic |
| GATTCATAGGTGGAACTGAA+GGG | 0.638366 | tig0006807:-55456 | Msa1344440:CDS |
| GTAGTGGATGTGAGTCAGGT+TGG | 0.642732 | tig0006807:-55513 | Msa1344440:CDS |
| TGTCATGAAGAAAAGAAGGA+AGG | 0.667075 | tig0006807:+55212 | None:intergenic |
| GAAAACACTAGATTCATAGG+TGG | 0.672436 | tig0006807:-55466 | Msa1344440:CDS |
| TGACTGTGTCAGGTCAATGT+CGG | 0.696967 | tig0006807:-49563 | Msa1344440:intron |
| AATATGGTAGACTATTCACA+AGG | 0.724521 | tig0006807:-54993 | Msa1344440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTTCAATGTAAATAAA+AGG | + | tig0006807:50748-50767 | None:intergenic | 10.0% |
| !! | TAAAGAATTAATACAATTAA+GGG | + | tig0006807:50792-50811 | None:intergenic | 10.0% |
| !! | ATAAAGAATTAATACAATTA+AGG | + | tig0006807:50793-50812 | None:intergenic | 10.0% |
| !!! | ATAAACAAAAATCATTTTTT+AGG | - | tig0006807:51121-51140 | Msa1344440:intron | 10.0% |
| !! | AATTACTTATTTAATTAAAC+AGG | + | tig0006807:51718-51737 | None:intergenic | 10.0% |
| !! | CAAATGAAAAAAATTATAAA+TGG | + | tig0006807:51887-51906 | None:intergenic | 10.0% |
| !!! | AAAAATTTTCGTTAATTAAA+AGG | + | tig0006807:52929-52948 | None:intergenic | 10.0% |
| !! | TTTAATAAATTAATTAAGGT+TGG | - | tig0006807:52974-52993 | Msa1344440:intron | 10.0% |
| !!! | TTTTTACTATAATTAAATCA+GGG | + | tig0006807:53083-53102 | None:intergenic | 10.0% |
| !!! | TTTTTTACTATAATTAAATC+AGG | + | tig0006807:53084-53103 | None:intergenic | 10.0% |
| !!! | TAAGAAGATAATTTAATTTT+AGG | + | tig0006807:53774-53793 | None:intergenic | 10.0% |
| !!! | ATATCAAATGTTTTAATTAA+TGG | + | tig0006807:54259-54278 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAGATGATATATA+TGG | + | tig0006807:54517-54536 | None:intergenic | 10.0% |
| !!! | TCTTTTTAAAAGTTTTTAAT+AGG | - | tig0006807:54526-54545 | Msa1344440:intron | 10.0% |
| !! | CATGTGATTATATAAAAAAT+TGG | - | tig0006807:50904-50923 | Msa1344440:intron | 15.0% |
| !!! | TAAGTAAAAACTTACTTTTT+AGG | + | tig0006807:51058-51077 | None:intergenic | 15.0% |
| !! | AAAGGAATAAAAAAAATGAA+AGG | + | tig0006807:51677-51696 | None:intergenic | 15.0% |
| !!! | TATACTATAATCTAAAGTTT+TGG | - | tig0006807:51845-51864 | Msa1344440:intron | 15.0% |
| !! | CAAATGGAAAAAATTATAAA+TGG | - | tig0006807:52015-52034 | Msa1344440:intron | 15.0% |
| !!! | AATATTCCTATACAATTTTA+TGG | + | tig0006807:52202-52221 | None:intergenic | 15.0% |
| !! | AAATTGTATAGGAATATTAA+AGG | - | tig0006807:52204-52223 | Msa1344440:intron | 15.0% |
| !!! | AATTTTTTTCTGCTAATAAT+GGG | + | tig0006807:53023-53042 | None:intergenic | 15.0% |
| !!! | AAATTTTTTTCTGCTAATAA+TGG | + | tig0006807:53024-53043 | None:intergenic | 15.0% |
| !! | TAGTAAAAAATTATTACTTG+TGG | - | tig0006807:53094-53113 | Msa1344440:intron | 15.0% |
| !! | AGTAAAAAATTATTACTTGT+GGG | - | tig0006807:53095-53114 | Msa1344440:intron | 15.0% |
| !! | ATCATCTCTTAAAAAATTAA+AGG | - | tig0006807:53569-53588 | Msa1344440:intron | 15.0% |
| !! | TCATCTCTTAAAAAATTAAA+GGG | - | tig0006807:53570-53589 | Msa1344440:intron | 15.0% |
| !!! | ATGAAATTTATGTTTTGAAA+CGG | - | tig0006807:54279-54298 | Msa1344440:intron | 15.0% |
| !!! | ACTAATTATTTTGAGGTAAT+TGG | - | tig0006807:49872-49891 | Msa1344440:intron | 20.0% |
| !!! | AATTTGTTTGTGTTATTTGT+AGG | - | tig0006807:49954-49973 | Msa1344440:intron | 20.0% |
| !!! | ATTTGTTTGTGTTATTTGTA+GGG | - | tig0006807:49955-49974 | Msa1344440:intron | 20.0% |
| !!! | GTAATTTTGTTGTTAATCAA+TGG | - | tig0006807:50256-50275 | Msa1344440:intron | 20.0% |
| !! | TAATTGATAAATTAATCCGA+AGG | + | tig0006807:50586-50605 | None:intergenic | 20.0% |
| !!! | GTGTATGTACTATTATTTTT+TGG | + | tig0006807:50657-50676 | None:intergenic | 20.0% |
| !! | TTATCTGAATTAACATTTGT+CGG | + | tig0006807:50846-50865 | None:intergenic | 20.0% |
| !! | ACAAATGTTAATTCAGATAA+AGG | - | tig0006807:50846-50865 | Msa1344440:intron | 20.0% |
| !!! | TAAGCAAAAATTCACATTTT+AGG | - | tig0006807:50970-50989 | Msa1344440:intron | 20.0% |
| !!! | CACATACATCATTTTTTAAA+TGG | + | tig0006807:50997-51016 | None:intergenic | 20.0% |
| !! | CATTTAAAAAATGATGTATG+TGG | - | tig0006807:50995-51014 | Msa1344440:intron | 20.0% |
| !!! | TTTTTACTTATATTTGTGAC+CGG | - | tig0006807:51068-51087 | Msa1344440:intron | 20.0% |
| !! | ACAAAAAAACTAAACGAAAT+GGG | + | tig0006807:51521-51540 | None:intergenic | 20.0% |
| !! | ACATAAAAAATAATGATGGT+GGG | + | tig0006807:51971-51990 | None:intergenic | 20.0% |
| !! | AGACACATAAAAAATAATGA+TGG | + | tig0006807:51975-51994 | None:intergenic | 20.0% |
| !!! | TTTTCCATTTGTTAGTAATT+TGG | + | tig0006807:52006-52025 | None:intergenic | 20.0% |
| !! | TATAGGAATATTAAAGGATA+TGG | - | tig0006807:52210-52229 | Msa1344440:intron | 20.0% |
| !! | ATAGGAATATTAAAGGATAT+GGG | - | tig0006807:52211-52230 | Msa1344440:intron | 20.0% |
| !! | AAAGCAGATATATTAAACTA+AGG | + | tig0006807:52482-52501 | None:intergenic | 20.0% |
| !!! | TTTTAATGAAATGAAAGTAG+AGG | + | tig0006807:52517-52536 | None:intergenic | 20.0% |
| !!! | TAACCTTAACTTTGAAAAAA+TGG | - | tig0006807:52828-52847 | Msa1344440:intron | 20.0% |
| !!! | TTACAGTTTTAAATTGCAAT+TGG | + | tig0006807:52879-52898 | None:intergenic | 20.0% |
| !! | AAAGGCTCATTTAAAAAAAA+TGG | + | tig0006807:52911-52930 | None:intergenic | 20.0% |
| !!! | AAATTTTTTGATTAAGCAAG+TGG | - | tig0006807:52941-52960 | Msa1344440:intron | 20.0% |
| !!! | ATAAATTAATTAAGGTTGGT+TGG | - | tig0006807:52978-52997 | Msa1344440:intron | 20.0% |
| !! | GTAAAAAATTATTACTTGTG+GGG | - | tig0006807:53096-53115 | Msa1344440:intron | 20.0% |
| !!! | AGCTTCTAAAAAATTATTGT+GGG | - | tig0006807:53971-53990 | Msa1344440:intron | 20.0% |
| !! | AAACTAATAACATGTACAAT+TGG | - | tig0006807:54130-54149 | Msa1344440:intron | 20.0% |
| !!! | TGTTTTAATTAATGGAGAAT+TGG | + | tig0006807:54251-54270 | None:intergenic | 20.0% |
| !!! | GTAAATTTTGATTTTCTGTT+GGG | + | tig0006807:54788-54807 | None:intergenic | 20.0% |
| !!! | TGTAAATTTTGATTTTCTGT+TGG | + | tig0006807:54789-54808 | None:intergenic | 20.0% |
| !! | AAAATCAAAATTTACAAGCT+AGG | - | tig0006807:54793-54812 | Msa1344440:intron | 20.0% |
| !! | TGTTTTCATAAGAATGTTCA+AGG | + | tig0006807:49353-49372 | Msa1344430:CDS | 25.0% |
| ! | TATGAAAACACTAGATTCAT+AGG | - | tig0006807:49363-49382 | Msa1344440:three_prime_UTR | 25.0% |
| !! | CTTTTCAACTGTAAGAAATA+TGG | - | tig0006807:49665-49684 | Msa1344440:intron | 25.0% |
| ! | TATTTCCTACATAACTTTGT+TGG | + | tig0006807:49823-49842 | Msa1344430:intron | 25.0% |
| ! | ACAAAGTTATGTAGGAAATA+TGG | - | tig0006807:49823-49842 | Msa1344440:intron | 25.0% |
| !!! | TTCAGCAACTAATTATTTTG+AGG | - | tig0006807:49865-49884 | Msa1344440:intron | 25.0% |
| ! | GATTACAAGCTAATTTAGTT+AGG | - | tig0006807:50280-50299 | Msa1344440:intron | 25.0% |
| ! | AAGGAGTAAACATACTTAAA+CGG | + | tig0006807:50312-50331 | None:intergenic | 25.0% |
| ! | GTAGATTCATCAAAATAACA+AGG | + | tig0006807:50331-50350 | None:intergenic | 25.0% |
| !! | AGTAAAACAGATTTTGAATG+AGG | + | tig0006807:50479-50498 | None:intergenic | 25.0% |
| ! | TTTCAGTACATTAAGATGTA+CGG | + | tig0006807:50702-50721 | None:intergenic | 25.0% |
| ! | AGAATTAATACAATTAAGGG+TGG | + | tig0006807:50789-50808 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATTTGTGAC+CGG | + | tig0006807:50960-50979 | None:intergenic | 25.0% |
| ! | TATAAACGAATCAAAAGGAT+CGG | + | tig0006807:51222-51241 | None:intergenic | 25.0% |
| ! | TAGCTTATAAACGAATCAAA+AGG | + | tig0006807:51227-51246 | None:intergenic | 25.0% |
| ! | AATCAGATTACATGCATATT+TGG | + | tig0006807:51311-51330 | None:intergenic | 25.0% |
| !! | TGATTCTAGAAAAGAGAATA+TGG | - | tig0006807:51326-51345 | Msa1344440:intron | 25.0% |
| ! | GACAAAAAAACTAAACGAAA+TGG | + | tig0006807:51522-51541 | None:intergenic | 25.0% |
| !! | TTTGTCAACTTTATCTCTTT+TGG | - | tig0006807:51536-51555 | Msa1344440:intron | 25.0% |
| !! | TTGTCAACTTTATCTCTTTT+GGG | - | tig0006807:51537-51556 | Msa1344440:intron | 25.0% |
| ! | AATTGACTAGGAATAAGTAA+AGG | + | tig0006807:51695-51714 | None:intergenic | 25.0% |
| ! | TAATTAAACAGGAATTGACT+AGG | + | tig0006807:51707-51726 | None:intergenic | 25.0% |
| !!! | CTTAACTTTTTCAACCTTTA+TGG | + | tig0006807:51757-51776 | None:intergenic | 25.0% |
| ! | CATAAAGGTTGAAAAAGTTA+AGG | - | tig0006807:51755-51774 | Msa1344440:intron | 25.0% |
| !! | AATATGACCTTTGAGAATTT+AGG | - | tig0006807:51784-51803 | Msa1344440:intron | 25.0% |
| !!! | ACTATAATCTAAAGTTTTGG+CGG | - | tig0006807:51848-51867 | Msa1344440:intron | 25.0% |
| ! | GATAGACACAAAAAAATAAG+TGG | - | tig0006807:51923-51942 | Msa1344440:intron | 25.0% |
| ! | CACATAAAAAATAATGATGG+TGG | + | tig0006807:51972-51991 | None:intergenic | 25.0% |
| ! | GGAAAAAATTATAAATGGAG+AGG | - | tig0006807:52020-52039 | Msa1344440:intron | 25.0% |
| ! | AAAAGCTAAAGTAATGAAGA+AGG | - | tig0006807:52088-52107 | Msa1344440:intron | 25.0% |
| ! | TGCATTCCATAAAATTGTAT+AGG | - | tig0006807:52193-52212 | Msa1344440:intron | 25.0% |
| ! | CCTATATTACAATTACAACA+AGG | + | tig0006807:52299-52318 | None:intergenic | 25.0% |
| !! | CCTTGTTGTAATTGTAATAT+AGG | - | tig0006807:52296-52315 | Msa1344440:intron | 25.0% |
| ! | TGTTGTAATTGTAATATAGG+AGG | - | tig0006807:52299-52318 | Msa1344440:intron | 25.0% |
| ! | ATAAAGAGGATATCAGAAAA+TGG | + | tig0006807:52342-52361 | None:intergenic | 25.0% |
| !!! | GATCCATTTTTTCAAAGTTA+AGG | + | tig0006807:52834-52853 | None:intergenic | 25.0% |
| ! | AATATATCAATGGTAGAAAG+TGG | - | tig0006807:53212-53231 | Msa1344440:intron | 25.0% |
| ! | AACATTTAACCTCAAATCAA+CGG | + | tig0006807:53500-53519 | None:intergenic | 25.0% |
| ! | AAATGTTAACTTATGTCCTT+GGG | - | tig0006807:53593-53612 | Msa1344440:intron | 25.0% |
| ! | ACAAGTTAAGAAGCTAAAAA+AGG | + | tig0006807:53726-53745 | None:intergenic | 25.0% |
| ! | ACATTATCTCTTTAGATCTA+CGG | + | tig0006807:53849-53868 | None:intergenic | 25.0% |
| !! | GAGCTTCTAAAAAATTATTG+TGG | - | tig0006807:53970-53989 | Msa1344440:intron | 25.0% |
| !! | AAGTTTTTAATAGGTTTCGT+CGG | - | tig0006807:54535-54554 | Msa1344440:intron | 25.0% |
| !! | TTGACCATACATATTTTACT+AGG | - | tig0006807:54674-54693 | Msa1344440:CDS | 25.0% |
| ! | TTTGCCTAGTAAAATATGTA+TGG | + | tig0006807:54681-54700 | None:intergenic | 25.0% |
| ! | AGATTACCAAATAGAAAAGA+GGG | + | tig0006807:54710-54729 | None:intergenic | 25.0% |
| ! | TAGATTACCAAATAGAAAAG+AGG | + | tig0006807:54711-54730 | None:intergenic | 25.0% |
| ! | TTATTACAAGCGTAATTACA+AGG | + | tig0006807:54966-54985 | None:intergenic | 25.0% |
| ! | AGAATATTTGAAGAAAACAG+AGG | + | tig0006807:55104-55123 | None:intergenic | 25.0% |
| ! | GCTTAATAAACTTATCCTAA+AGG | - | tig0006807:55611-55630 | Msa1344440:intron | 25.0% |
| TTTGATTCTGAATGTAGTAG+TGG | - | tig0006807:49303-49322 | Msa1344440:three_prime_UTR | 30.0% | |
| TTGAAGTAAACATCATCATG+TGG | + | tig0006807:49507-49526 | Msa1344430:intron | 30.0% | |
| !! | ATTTTTCAGACCAATGTTGT+TGG | - | tig0006807:49791-49810 | Msa1344440:intron | 30.0% |
| !! | TTTTTCAGACCAATGTTGTT+GGG | - | tig0006807:49792-49811 | Msa1344440:intron | 30.0% |
| ACAAACCAACAAAGTTATGT+AGG | - | tig0006807:49815-49834 | Msa1344440:intron | 30.0% | |
| AATATGGTAGACTATTCACA+AGG | - | tig0006807:49839-49858 | Msa1344440:intron | 30.0% | |
| AAAAACCAAATTGTTCTTCC+TGG | + | tig0006807:49993-50012 | Msa1344430:intron | 30.0% | |
| !!! | AGTTCATTTTTTGAGAGAGA+TGG | + | tig0006807:50021-50040 | Msa1344430:intron | 30.0% |
| CTCTCAAAAAATGAACTTCA+AGG | - | tig0006807:50024-50043 | Msa1344440:intron | 30.0% | |
| ACAAGCTAATTTAGTTAGGA+AGG | - | tig0006807:50284-50303 | Msa1344440:intron | 30.0% | |
| TATACATCTTACTCAACCTT+CGG | - | tig0006807:50567-50586 | Msa1344440:intron | 30.0% | |
| AAGGGTGGTAAAAAACTTTA+CGG | + | tig0006807:50774-50793 | None:intergenic | 30.0% | |
| ! | AATTTAGTCACACACTGATT+AGG | - | tig0006807:50870-50889 | Msa1344440:intron | 30.0% |
| ! | TTTTGCTTATATTTGTGACC+GGG | + | tig0006807:50959-50978 | None:intergenic | 30.0% |
| GGAATTTGACAAAATTACGA+GGG | + | tig0006807:51280-51299 | None:intergenic | 30.0% | |
| AGGAATTTGACAAAATTACG+AGG | + | tig0006807:51281-51300 | None:intergenic | 30.0% | |
| ! | CGTAATTTTGTCAAATTCCT+AGG | - | tig0006807:51281-51300 | Msa1344440:intron | 30.0% |
| !! | ATATGGCAAAAGTGTTATGA+AGG | - | tig0006807:51343-51362 | Msa1344440:intron | 30.0% |
| !! | TATGGCAAAAGTGTTATGAA+GGG | - | tig0006807:51344-51363 | Msa1344440:intron | 30.0% |
| TTCCATTCCAACATCAATAT+TGG | + | tig0006807:51413-51432 | None:intergenic | 30.0% | |
| TTGTCATCCTAAATTCTCAA+AGG | + | tig0006807:51794-51813 | None:intergenic | 30.0% | |
| TAGTATATGAGAAAACACGT+GGG | + | tig0006807:51832-51851 | None:intergenic | 30.0% | |
| ATAGTATATGAGAAAACACG+TGG | + | tig0006807:51833-51852 | None:intergenic | 30.0% | |
| AGACACAAAAAAATAAGTGG+TGG | - | tig0006807:51926-51945 | Msa1344440:intron | 30.0% | |
| CTCTCCAAATTACTAACAAA+TGG | - | tig0006807:51999-52018 | Msa1344440:intron | 30.0% | |
| ! | TACGTGTTTGATTTCTCTTT+GGG | + | tig0006807:52118-52137 | None:intergenic | 30.0% |
| ! | TTACGTGTTTGATTTCTCTT+TGG | + | tig0006807:52119-52138 | None:intergenic | 30.0% |
| ! | TCAGAAAATGGACAAGTTTT+TGG | + | tig0006807:52330-52349 | None:intergenic | 30.0% |
| ! | AAAGTCTCCTTTTTAATGAC+AGG | - | tig0006807:52411-52430 | Msa1344440:intron | 30.0% |
| ATCAGTGCTGTCAATTTAAT+GGG | + | tig0006807:52548-52567 | None:intergenic | 30.0% | |
| AATCAGTGCTGTCAATTTAA+TGG | + | tig0006807:52549-52568 | None:intergenic | 30.0% | |
| ! | TAGATTTTTACACACAGAAC+TGG | - | tig0006807:52606-52625 | Msa1344440:intron | 30.0% |
| AAGAGATTCAACTTCAAGAA+TGG | + | tig0006807:52741-52760 | None:intergenic | 30.0% | |
| ! | GATTAGTTCAGGAAATGAAT+GGG | + | tig0006807:52773-52792 | None:intergenic | 30.0% |
| ! | AGATTAGTTCAGGAAATGAA+TGG | + | tig0006807:52774-52793 | None:intergenic | 30.0% |
| ! | ATTAATTAAGGTTGGTTGGT+TGG | - | tig0006807:52982-53001 | Msa1344440:intron | 30.0% |
| !! | GGCTTTATGTGTTTGATTTT+GGG | + | tig0006807:53051-53070 | None:intergenic | 30.0% |
| ATTAAATCAGGGCTTAACAT+GGG | + | tig0006807:53072-53091 | None:intergenic | 30.0% | |
| AATTAAATCAGGGCTTAACA+TGG | + | tig0006807:53073-53092 | None:intergenic | 30.0% | |
| TTGCAGGTAAAAATATTGAG+TGG | - | tig0006807:53164-53183 | Msa1344440:intron | 30.0% | |
| AAAGTTATGTCAAGGGAATT+GGG | + | tig0006807:53321-53340 | None:intergenic | 30.0% | |
| AAAAGTTATGTCAAGGGAAT+TGG | + | tig0006807:53322-53341 | None:intergenic | 30.0% | |
| GAAATGTTAACTTATGTCCT+TGG | - | tig0006807:53592-53611 | Msa1344440:intron | 30.0% | |
| AATGTTAACTTATGTCCTTG+GGG | - | tig0006807:53594-53613 | Msa1344440:intron | 30.0% | |
| ATTATCTCTTTAGATCTACG+GGG | + | tig0006807:53847-53866 | None:intergenic | 30.0% | |
| CATTATCTCTTTAGATCTAC+GGG | + | tig0006807:53848-53867 | None:intergenic | 30.0% | |
| !! | AGCTCAACAATAGTTCTAAA+CGG | - | tig0006807:53912-53931 | Msa1344440:intron | 30.0% |
| GACTATTGAGTAAATGTGAA+GGG | + | tig0006807:54027-54046 | None:intergenic | 30.0% | |
| CTTCACATTTACTCAATAGT+CGG | - | tig0006807:54026-54045 | Msa1344440:intron | 30.0% | |
| TTGTGAACCAACAATTTCAT+TGG | + | tig0006807:54175-54194 | None:intergenic | 30.0% | |
| TCTTAAAGCACAAAACAAGA+TGG | - | tig0006807:54323-54342 | Msa1344440:intron | 30.0% | |
| TAATGGTAGATCTCATTTGA+TGG | - | tig0006807:54399-54418 | Msa1344440:intron | 30.0% | |
| CTATTACTTTCATGCATTCT+TGG | + | tig0006807:54489-54508 | None:intergenic | 30.0% | |
| ATGGTCAACTAAAGAAGATT+AGG | + | tig0006807:54662-54681 | None:intergenic | 30.0% | |
| ! | TGATTTTCTGTTGGGAAATT+CGG | + | tig0006807:54780-54799 | None:intergenic | 30.0% |
| ATCAAAATTTACAAGCTAGG+TGG | - | tig0006807:54796-54815 | Msa1344440:intron | 30.0% | |
| ! | ATTACTTTGAGTTCGTAGAA+GGG | + | tig0006807:54943-54962 | None:intergenic | 30.0% |
| !! | TTTAATCACAGTTTTGTGTG+TGG | + | tig0006807:55003-55022 | None:intergenic | 30.0% |
| AAATGACAAAGAGGTAAGTA+GGG | + | tig0006807:55068-55087 | None:intergenic | 30.0% | |
| AAAATGACAAAGAGGTAAGT+AGG | + | tig0006807:55069-55088 | None:intergenic | 30.0% | |
| AAGCAAACTAAAAAGAGAAG+AGG | + | tig0006807:55595-55614 | None:intergenic | 30.0% | |
| GAAAACACTAGATTCATAGG+TGG | - | tig0006807:49366-49385 | Msa1344440:three_prime_UTR | 35.0% | |
| ! | TGACTCTTTTGTCTTTGTGT+TGG | + | tig0006807:49413-49432 | Msa1344430:CDS | 35.0% |
| GTCACAAATGAGTATTCTGA+AGG | - | tig0006807:49429-49448 | Msa1344440:three_prime_UTR | 35.0% | |
| ! | AAATGAGTATTCTGAAGGAG+TGG | - | tig0006807:49434-49453 | Msa1344440:three_prime_UTR | 35.0% |
| ! | GTAGTGAAAAAGCACAAGAA+AGG | - | tig0006807:49540-49559 | Msa1344440:three_prime_UTR | 35.0% |
| TGTCATGAAGAAAAGAAGGA+AGG | + | tig0006807:49623-49642 | Msa1344430:intron | 35.0% | |
| AAATTGTTCTTCCTGGTATG+AGG | + | tig0006807:49986-50005 | Msa1344430:exon | 35.0% | |
| TCATACCAGGAAGAACAATT+TGG | - | tig0006807:49985-50004 | Msa1344440:intron | 35.0% | |
| ! | TTCATTCTTTGTTTAGCAGC+TGG | - | tig0006807:50135-50154 | Msa1344440:intron | 35.0% |
| ATACTTCCATTCCATGGATT+TGG | + | tig0006807:50629-50648 | None:intergenic | 35.0% | |
| GAACATATACTTCCATTCCA+TGG | + | tig0006807:50635-50654 | None:intergenic | 35.0% | |
| TTTGCTTATATTTGTGACCG+GGG | + | tig0006807:50958-50977 | None:intergenic | 35.0% | |
| TTACTTATATTTGTGACCGG+AGG | - | tig0006807:51071-51090 | Msa1344440:intron | 35.0% | |
| TACTTATATTTGTGACCGGA+GGG | - | tig0006807:51072-51091 | Msa1344440:intron | 35.0% | |
| !! | CAAAAGTGTTATGAAGGGAT+GGG | - | tig0006807:51349-51368 | Msa1344440:intron | 35.0% |
| GACGGTATACAAATATGATG+AGG | - | tig0006807:51379-51398 | Msa1344440:intron | 35.0% | |
| GGTATACAAATATGATGAGG+CGG | - | tig0006807:51382-51401 | Msa1344440:intron | 35.0% | |
| GGAAATGCCAATATTGATGT+TGG | - | tig0006807:51403-51422 | Msa1344440:intron | 35.0% | |
| TGCCAATATTGATGTTGGAA+TGG | - | tig0006807:51408-51427 | Msa1344440:intron | 35.0% | |
| ! | TCAACTTTATCTCTTTTGGG+AGG | - | tig0006807:51540-51559 | Msa1344440:intron | 35.0% |
| !!! | CTTTTTCAACCTTTATGGAC+TGG | + | tig0006807:51752-51771 | None:intergenic | 35.0% |
| AGTATATGAGAAAACACGTG+GGG | + | tig0006807:51831-51850 | None:intergenic | 35.0% | |
| AGAATCTCATTGCCAAAACT+GGG | + | tig0006807:52053-52072 | None:intergenic | 35.0% | |
| AAGAATCTCATTGCCAAAAC+TGG | + | tig0006807:52054-52073 | None:intergenic | 35.0% | |
| ! | CAATTTTATGGAATGCAGCT+AGG | + | tig0006807:52190-52209 | None:intergenic | 35.0% |
| CTGATATCCTCTTTATGTGA+CGG | - | tig0006807:52346-52365 | Msa1344440:intron | 35.0% | |
| TTAAAAAGGAGACTTTCCCA+TGG | + | tig0006807:52407-52426 | None:intergenic | 35.0% | |
| TCAGTGCTGTCAATTTAATG+GGG | + | tig0006807:52547-52566 | None:intergenic | 35.0% | |
| !! | TTCAGGAAATGAATGGGTTA+AGG | + | tig0006807:52767-52786 | None:intergenic | 35.0% |
| ! | CACTCAACAAAGATTAGTTC+AGG | + | tig0006807:52784-52803 | None:intergenic | 35.0% |
| !! | GGGCTTTATGTGTTTGATTT+TGG | + | tig0006807:53052-53071 | None:intergenic | 35.0% |
| !! | GGGGTCATCATTTTTGTTAA+AGG | - | tig0006807:53115-53134 | Msa1344440:intron | 35.0% |
| TGTTCCAAAAAGTTGTCAAC+AGG | - | tig0006807:53141-53160 | Msa1344440:intron | 35.0% | |
| TAGAAAGTGGAACTTTGTCA+TGG | - | tig0006807:53225-53244 | Msa1344440:intron | 35.0% | |
| AAATTGGCAATGGTCACATA+AGG | + | tig0006807:53286-53305 | None:intergenic | 35.0% | |
| TGACCATTGCCAATTTAGTT+TGG | - | tig0006807:53290-53309 | Msa1344440:intron | 35.0% | |
| CATCCAAACTAAATTGGCAA+TGG | + | tig0006807:53296-53315 | None:intergenic | 35.0% | |
| TGGGAACATCCAAACTAAAT+TGG | + | tig0006807:53302-53321 | None:intergenic | 35.0% | |
| GTGCACAAAAGTTATGTCAA+GGG | + | tig0006807:53328-53347 | None:intergenic | 35.0% | |
| AGTGCACAAAAGTTATGTCA+AGG | + | tig0006807:53329-53348 | None:intergenic | 35.0% | |
| GTGTAGCACATTTATTTCCT+TGG | + | tig0006807:53373-53392 | None:intergenic | 35.0% | |
| ATCTAAATCAACGGCTGAAA+TGG | + | tig0006807:53524-53543 | None:intergenic | 35.0% | |
| TGCTGTTCGATCTAAATCAA+CGG | + | tig0006807:53533-53552 | None:intergenic | 35.0% | |
| TATTGTTACACCATGCAGTA+GGG | + | tig0006807:53817-53836 | None:intergenic | 35.0% | |
| TTATTGTTACACCATGCAGT+AGG | + | tig0006807:53818-53837 | None:intergenic | 35.0% | |
| CTAAACGGACACTAATATCA+CGG | - | tig0006807:53927-53946 | Msa1344440:intron | 35.0% | |
| !! | GGTGGATTAGAAGCTATAAT+TGG | - | tig0006807:53948-53967 | Msa1344440:intron | 35.0% |
| TGTGGGTAAACACTAACTTT+AGG | - | tig0006807:53988-54007 | Msa1344440:intron | 35.0% | |
| TAAACACTAACTTTAGGTGG+TGG | - | tig0006807:53994-54013 | Msa1344440:intron | 35.0% | |
| CGACTATTGAGTAAATGTGA+AGG | + | tig0006807:54028-54047 | None:intergenic | 35.0% | |
| !!! | GTTTTGAAACGGAGTTCAAA+AGG | - | tig0006807:54290-54309 | Msa1344440:intron | 35.0% |
| CTCATGACTTTGGATCAATT+TGG | + | tig0006807:54355-54374 | None:intergenic | 35.0% | |
| ! | GATCTACCATTATGTCACTT+AGG | + | tig0006807:54391-54410 | None:intergenic | 35.0% |
| ! | AACCATCCCTCTTTTCTATT+TGG | - | tig0006807:54701-54720 | Msa1344440:intron | 35.0% |
| TACCAAATAGAAAAGAGGGA+TGG | + | tig0006807:54706-54725 | None:intergenic | 35.0% | |
| !! | TGTTAGCTTTAAGCCAATCA+AGG | - | tig0006807:54867-54886 | Msa1344440:intron | 35.0% |
| AAGCTTTCAGAAGCAGAAAA+GGG | + | tig0006807:54896-54915 | None:intergenic | 35.0% | |
| ! | TTACTTTGAGTTCGTAGAAG+GGG | + | tig0006807:54942-54961 | None:intergenic | 35.0% |
| ! | GATTACTTTGAGTTCGTAGA+AGG | + | tig0006807:54944-54963 | None:intergenic | 35.0% |
| AATGACAAAGAGGTAAGTAG+GGG | + | tig0006807:55067-55086 | None:intergenic | 35.0% | |
| CAAGGAGAAAAATGACAAAG+AGG | + | tig0006807:55077-55096 | None:intergenic | 35.0% | |
| GAAGAAAACAGAGGAAAACA+AGG | + | tig0006807:55095-55114 | None:intergenic | 35.0% | |
| !!! | CGACATGAACATGTTTTTAG+TGG | + | tig0006807:55172-55191 | None:intergenic | 35.0% |
| TAATCAAATGTGACTGTGTC+AGG | - | tig0006807:55259-55278 | Msa1344440:CDS | 35.0% | |
| GTTAATGGCACTAACAGTTA+CGG | + | tig0006807:55547-55566 | None:intergenic | 35.0% | |
| ! | AACTGTTAGTGCCATTAACA+TGG | - | tig0006807:55548-55567 | Msa1344440:exon | 35.0% |
| TATAGGGCAAACCATGTTAA+TGG | + | tig0006807:55562-55581 | None:intergenic | 35.0% | |
| AGATTCATAGGTGGAACTGA+AGG | - | tig0006807:49375-49394 | Msa1344440:three_prime_UTR | 40.0% | |
| GATTCATAGGTGGAACTGAA+GGG | - | tig0006807:49376-49395 | Msa1344440:three_prime_UTR | 40.0% | |
| AGGAGTGGAAGATTTGTCTA+TGG | - | tig0006807:49449-49468 | Msa1344440:three_prime_UTR | 40.0% | |
| ATGGTTTCTGATGCTTCTTC+TGG | - | tig0006807:49468-49487 | Msa1344440:three_prime_UTR | 40.0% | |
| ACATCATCATGTGGAAGATG+TGG | + | tig0006807:49498-49517 | Msa1344430:intron | 40.0% | |
| GGTACAACGAAACAGAAAGT+TGG | - | tig0006807:49561-49580 | Msa1344440:intron | 40.0% | |
| GCAGTGTCATGAAGAAAAGA+AGG | + | tig0006807:49627-49646 | Msa1344430:intron | 40.0% | |
| !! | TTGGTTTGTCCCAACAACAT+TGG | + | tig0006807:49804-49823 | Msa1344430:intron | 40.0% |
| ! | TCTTTGTTTAGCAGCTGGTA+TGG | - | tig0006807:50140-50159 | Msa1344440:intron | 40.0% |
| TGCAACAACTTCAATAGCAG+AGG | + | tig0006807:50194-50213 | None:intergenic | 40.0% | |
| TGCTATTGAAGTTGTTGCAG+TGG | - | tig0006807:50195-50214 | Msa1344440:intron | 40.0% | |
| CACAATCCAAATCCATGGAA+TGG | - | tig0006807:50620-50639 | Msa1344440:intron | 40.0% | |
| GGTGGTAAAAAACTTTACGG+TGG | + | tig0006807:50771-50790 | None:intergenic | 40.0% | |
| ! | TAGTCACACACTGATTAGGT+AGG | - | tig0006807:50874-50893 | Msa1344440:intron | 40.0% |
| TTGCTTATATTTGTGACCGG+GGG | + | tig0006807:50957-50976 | None:intergenic | 40.0% | |
| AAAGTGTATTGTACACCCTC+CGG | + | tig0006807:51090-51109 | None:intergenic | 40.0% | |
| CATGCATATTTGGATTGCCT+AGG | + | tig0006807:51301-51320 | None:intergenic | 40.0% | |
| !! | GCAAAAGTGTTATGAAGGGA+TGG | - | tig0006807:51348-51367 | Msa1344440:intron | 40.0% |
| CTTTGAGTCAGGAAGATATG+AGG | + | tig0006807:51481-51500 | None:intergenic | 40.0% | |
| CTCATATCTTCCTGACTCAA+AGG | - | tig0006807:51479-51498 | Msa1344440:intron | 40.0% | |
| ATTCTGCTACCAGTCCATAA+AGG | - | tig0006807:51740-51759 | Msa1344440:intron | 40.0% | |
| ! | AGAGGATCTTAACCCAGTTT+TGG | - | tig0006807:52038-52057 | Msa1344440:intron | 40.0% |
| ATATCCTCTTTATGTGACGG+TGG | - | tig0006807:52349-52368 | Msa1344440:intron | 40.0% | |
| TTTATGTGACGGTGGCATTT+AGG | - | tig0006807:52357-52376 | Msa1344440:intron | 40.0% | |
| TTATGTGACGGTGGCATTTA+GGG | - | tig0006807:52358-52377 | Msa1344440:intron | 40.0% | |
| CAACAATACTTTCCCACCAT+GGG | - | tig0006807:52388-52407 | Msa1344440:intron | 40.0% | |
| ! | GTCTCCTTTTTAATGACAGG+TGG | - | tig0006807:52414-52433 | Msa1344440:intron | 40.0% |
| ACAGCCACCTGTCATTAAAA+AGG | + | tig0006807:52421-52440 | None:intergenic | 40.0% | |
| ! | TAAGGATGCTGTCTTTTTCC+TGG | + | tig0006807:52464-52483 | None:intergenic | 40.0% |
| CAGTGCTGTCAATTTAATGG+GGG | + | tig0006807:52546-52565 | None:intergenic | 40.0% | |
| GAAGAAGTGAGGTTTACACA+TGG | + | tig0006807:52667-52686 | None:intergenic | 40.0% | |
| CAACTTCAAGAATGGTGAAG+AGG | + | tig0006807:52733-52752 | None:intergenic | 40.0% | |
| AGTGTCTTCATCTCTGTCAT+AGG | - | tig0006807:52800-52819 | Msa1344440:intron | 40.0% | |
| GTGTCTTCATCTCTGTCATA+GGG | - | tig0006807:52801-52820 | Msa1344440:intron | 40.0% | |
| ! | GCAACCTGTTGACAACTTTT+TGG | + | tig0006807:53148-53167 | None:intergenic | 40.0% |
| AAAAGTTGTCAACAGGTTGC+AGG | - | tig0006807:53148-53167 | Msa1344440:intron | 40.0% | |
| AAAGTGGAACTTTGTCATGG+TGG | - | tig0006807:53228-53247 | Msa1344440:intron | 40.0% | |
| AAGTGGAACTTTGTCATGGT+GGG | - | tig0006807:53229-53248 | Msa1344440:intron | 40.0% | |
| GTCACATAAGGTGGCATTTA+GGG | + | tig0006807:53274-53293 | None:intergenic | 40.0% | |
| TCACACCAAAAACTAGATCG+AGG | - | tig0006807:53431-53450 | Msa1344440:intron | 40.0% | |
| !!! | GCATACCTCGATCTAGTTTT+TGG | + | tig0006807:53439-53458 | None:intergenic | 40.0% |
| !! | TGATTTCAGCCGTTGATTTG+AGG | - | tig0006807:53488-53507 | Msa1344440:intron | 40.0% |
| !! | CTTCTTAACTTGTGCCCTTA+GGG | - | tig0006807:53733-53752 | Msa1344440:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTAA+GGG | + | tig0006807:53750-53769 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | tig0006807:53751-53770 | None:intergenic | 40.0% |
| ATTGTTACACCATGCAGTAG+GGG | + | tig0006807:53816-53835 | None:intergenic | 40.0% | |
| AGAACTATTGTTGAGCTGCA+CGG | + | tig0006807:53909-53928 | None:intergenic | 40.0% | |
| GGGTAAACACTAACTTTAGG+TGG | - | tig0006807:53991-54010 | Msa1344440:intron | 40.0% | |
| CACATTTACTCAATAGTCGG+TGG | - | tig0006807:54029-54048 | Msa1344440:intron | 40.0% | |
| ACGAGTGCCAATGAAATTGT+TGG | - | tig0006807:54165-54184 | Msa1344440:intron | 40.0% | |
| ATTGATCCAAAGTCATGAGC+AGG | - | tig0006807:54356-54375 | Msa1344440:intron | 40.0% | |
| CGCAAACCTAAGTGACATAA+TGG | - | tig0006807:54382-54401 | Msa1344440:intron | 40.0% | |
| CATTGCCTCAAATATGACTC+TGG | + | tig0006807:54561-54580 | None:intergenic | 40.0% | |
| !! | TGAAAAGTGTTAGACTTGCG+AGG | + | tig0006807:54634-54653 | None:intergenic | 40.0% |
| GGTACAGTTTCTTTCTTGCA+AGG | + | tig0006807:54753-54772 | None:intergenic | 40.0% | |
| TCTGTTGGGAAATTCGGATA+TGG | + | tig0006807:54774-54793 | None:intergenic | 40.0% | |
| !! | CAGAAAAGGGTATCCTTGAT+TGG | + | tig0006807:54883-54902 | None:intergenic | 40.0% |
| GAAGCTTTCAGAAGCAGAAA+AGG | + | tig0006807:54897-54916 | None:intergenic | 40.0% | |
| ! | TACTTTGAGTTCGTAGAAGG+GGG | + | tig0006807:54941-54960 | None:intergenic | 40.0% |
| ! | AGAAGTGATGACGCTACATA+GGG | - | tig0006807:55313-55332 | Msa1344440:CDS | 40.0% |
| AACATGGAATTTGGAAGGAG+AGG | + | tig0006807:55447-55466 | None:intergenic | 40.0% | |
| TCTCCTTCCAAATTCCATGT+TGG | - | tig0006807:55446-55465 | Msa1344440:CDS | 40.0% | |
| ATTATGAACTGCCTGCACAT+TGG | - | tig0006807:55503-55522 | Msa1344440:CDS | 40.0% | |
| AAGAGGCGATGAGTTCTATA+GGG | + | tig0006807:55578-55597 | None:intergenic | 40.0% | |
| !! | TGTAGTAGTGGATGTGAGTC+AGG | - | tig0006807:49315-49334 | Msa1344440:three_prime_UTR | 45.0% |
| TCATCATGTGGAAGATGTGG+AGG | + | tig0006807:49495-49514 | Msa1344430:intron | 45.0% | |
| GTAGGGAAAATCCTCATACC+AGG | - | tig0006807:49972-49991 | Msa1344440:intron | 45.0% | |
| TTGTTTAGCAGCTGGTATGG+AGG | - | tig0006807:50143-50162 | Msa1344440:intron | 45.0% | |
| GCATGCACAATCCAAATCCA+TGG | - | tig0006807:50615-50634 | Msa1344440:intron | 45.0% | |
| !! | TATGCTCTAAAGTACACCCC+CGG | - | tig0006807:50938-50957 | Msa1344440:intron | 45.0% |
| AACGCATGTTCCTTTGAGTC+AGG | + | tig0006807:51492-51511 | None:intergenic | 45.0% | |
| ! | TGGTGGATCCTATCACTAAG+TGG | - | tig0006807:51943-51962 | Msa1344440:intron | 45.0% |
| ACAAGGATAGATAGAGCCAG+AGG | + | tig0006807:52282-52301 | None:intergenic | 45.0% | |
| AATGCCACCGTCACATAAAG+AGG | + | tig0006807:52356-52375 | None:intergenic | 45.0% | |
| GCAACAATACTTTCCCACCA+TGG | - | tig0006807:52387-52406 | Msa1344440:intron | 45.0% | |
| AAAGGAGACTTTCCCATGGT+GGG | + | tig0006807:52403-52422 | None:intergenic | 45.0% | |
| AAAAGGAGACTTTCCCATGG+TGG | + | tig0006807:52404-52423 | None:intergenic | 45.0% | |
| TGAAGCTCAGTGAAGAAGTG+AGG | + | tig0006807:52678-52697 | None:intergenic | 45.0% | |
| ! | CATAAGGTGGCATTTAGGGT+GGG | + | tig0006807:53270-53289 | None:intergenic | 45.0% |
| ACATAAGGTGGCATTTAGGG+TGG | + | tig0006807:53271-53290 | None:intergenic | 45.0% | |
| GGTCACATAAGGTGGCATTT+AGG | + | tig0006807:53275-53294 | None:intergenic | 45.0% | |
| TTGGCAATGGTCACATAAGG+TGG | + | tig0006807:53283-53302 | None:intergenic | 45.0% | |
| CAGTTGAAAGCTCTATGCCA+AGG | - | tig0006807:53353-53372 | Msa1344440:intron | 45.0% | |
| ! | TTTTCTAAACGTGTGCCCCA+AGG | + | tig0006807:53612-53631 | None:intergenic | 45.0% |
| !! | GCTTCTTAACTTGTGCCCTT+AGG | - | tig0006807:53732-53751 | Msa1344440:intron | 45.0% |
| AATGTTGATCCCCTACTGCA+TGG | - | tig0006807:53804-53823 | Msa1344440:intron | 45.0% | |
| AACGGACACTAATATCACGG+TGG | - | tig0006807:53930-53949 | Msa1344440:intron | 45.0% | |
| CTCAATAGTCGGTGGCAATT+TGG | - | tig0006807:54037-54056 | Msa1344440:intron | 45.0% | |
| GCTTCTGTTGCTAACACTTG+TGG | - | tig0006807:54095-54114 | Msa1344440:intron | 45.0% | |
| ACTCTCACATGAGACTAGCA+TGG | + | tig0006807:54425-54444 | None:intergenic | 45.0% | |
| GTTTGCAAGGAAAGGAAGAG+GGG | + | tig0006807:54919-54938 | None:intergenic | 45.0% | |
| GGTTTGCAAGGAAAGGAAGA+GGG | + | tig0006807:54920-54939 | None:intergenic | 45.0% | |
| !! | ACAGTTTTGTGTGTGGCAGA+GGG | + | tig0006807:54996-55015 | None:intergenic | 45.0% |
| TGACTGTGTCAGGTCAATGT+CGG | - | tig0006807:55269-55288 | Msa1344440:CDS | 45.0% | |
| CTTCTGAATGTATGCGTGTC+TGG | + | tig0006807:55298-55317 | None:intergenic | 45.0% | |
| ! | CAGAAGTGATGACGCTACAT+AGG | - | tig0006807:55312-55331 | Msa1344440:CDS | 45.0% |
| AGAAGCAATGTCCTTGACTC+AGG | - | tig0006807:55378-55397 | Msa1344440:CDS | 45.0% | |
| GAAGCAATGTCCTTGACTCA+GGG | - | tig0006807:55379-55398 | Msa1344440:CDS | 45.0% | |
| CCACCAACATGGAATTTGGA+AGG | + | tig0006807:55452-55471 | None:intergenic | 45.0% | |
| CCTTCCAAATTCCATGTTGG+TGG | - | tig0006807:55449-55468 | Msa1344440:CDS | 45.0% | |
| AGCACCACCAACATGGAATT+TGG | + | tig0006807:55456-55475 | None:intergenic | 45.0% | |
| !! | TTTGAGAAGCACCACCAACA+TGG | + | tig0006807:55463-55482 | None:intergenic | 45.0% |
| !! | TTGGTGGTGCTTCTCAAAGT+TGG | - | tig0006807:55465-55484 | Msa1344440:CDS | 45.0% |
| ! | TGGTGGTGCTTCTCAAAGTT+GGG | - | tig0006807:55466-55485 | Msa1344440:CDS | 45.0% |
| GTATGCATCATCCAATGTGC+AGG | + | tig0006807:55517-55536 | None:intergenic | 45.0% | |
| GAAGAGGCGATGAGTTCTAT+AGG | + | tig0006807:55579-55598 | None:intergenic | 45.0% | |
| !! | ATATTATAAATTATATACAT+TGG | - | tig0006807:51171-51190 | Msa1344440:intron | 5.0% |
| !! | GAAATTTAATAAATTAATTA+AGG | - | tig0006807:52970-52989 | Msa1344440:intron | 5.0% |
| !! | GTAGTGGATGTGAGTCAGGT+TGG | - | tig0006807:49319-49338 | Msa1344440:three_prime_UTR | 50.0% |
| !! | GGTGGAACTGAAGGGTACTA+TGG | - | tig0006807:49384-49403 | Msa1344440:three_prime_UTR | 50.0% |
| GAAGGGATGGGCAATGAAGA+CGG | - | tig0006807:51361-51380 | Msa1344440:intron | 50.0% | |
| GAGTCAGGAAGATATGAGGC+AGG | + | tig0006807:51477-51496 | None:intergenic | 50.0% | |
| TCCAAACAGACAGGCTTGGA+GGG | + | tig0006807:51619-51638 | None:intergenic | 50.0% | |
| TTCCAAACAGACAGGCTTGG+AGG | + | tig0006807:51620-51639 | None:intergenic | 50.0% | |
| AGCTTCCAAACAGACAGGCT+TGG | + | tig0006807:51623-51642 | None:intergenic | 50.0% | |
| GTGACAGCTTCCAAACAGAC+AGG | + | tig0006807:51628-51647 | None:intergenic | 50.0% | |
| GGTGGGATCCACTTAGTGAT+AGG | + | tig0006807:51954-51973 | None:intergenic | 50.0% | |
| !! | GGTTTGGTTTGGATGGTGGT+TGG | + | tig0006807:52256-52275 | None:intergenic | 50.0% |
| !! | GCTTGGTTTGGTTTGGATGG+TGG | + | tig0006807:52260-52279 | None:intergenic | 50.0% |
| !! | GAGGCTTGGTTTGGTTTGGA+TGG | + | tig0006807:52263-52282 | None:intergenic | 50.0% |
| TCCAAACCAAACCAAGCCTC+TGG | - | tig0006807:52263-52282 | Msa1344440:intron | 50.0% | |
| ! | ATAGAGCCAGAGGCTTGGTT+TGG | + | tig0006807:52272-52291 | None:intergenic | 50.0% |
| GATAGATAGAGCCAGAGGCT+TGG | + | tig0006807:52277-52296 | None:intergenic | 50.0% | |
| ! | GCTGTCTTTTTCCTGGCAAC+CGG | + | tig0006807:52457-52476 | None:intergenic | 50.0% |
| GCTGCACGGTGCAACAATTA+TGG | + | tig0006807:53895-53914 | None:intergenic | 50.0% | |
| GCGTATCCTGCTCATGACTT+TGG | + | tig0006807:54365-54384 | None:intergenic | 50.0% | |
| GTCGGCCAGAGTCATATTTG+AGG | - | tig0006807:54553-54572 | Msa1344440:intron | 50.0% | |
| GGGTTTGCAAGGAAAGGAAG+AGG | + | tig0006807:54921-54940 | None:intergenic | 50.0% | |
| AGAAGGGGGTTTGCAAGGAA+AGG | + | tig0006807:54927-54946 | None:intergenic | 50.0% | |
| TTCGTAGAAGGGGGTTTGCA+AGG | + | tig0006807:54932-54951 | None:intergenic | 50.0% | |
| !! | CACAGTTTTGTGTGTGGCAG+AGG | + | tig0006807:54997-55016 | None:intergenic | 50.0% |
| TCAGCGTCGTGTTCTCTCAT+AGG | + | tig0006807:55200-55219 | None:intergenic | 50.0% | |
| TCCCTCCAAGCCTGTCTGTT+TGG | - | tig0006807:51615-51634 | Msa1344440:intron | 55.0% | |
| !! | GCCAGAGGCTTGGTTTGGTT+TGG | + | tig0006807:52267-52286 | None:intergenic | 55.0% |
| TGTGACGGTGGCATTTAGGG+TGG | - | tig0006807:52361-52380 | Msa1344440:intron | 55.0% | |
| ! | GTGACGGTGGCATTTAGGGT+GGG | - | tig0006807:52362-52381 | Msa1344440:intron | 55.0% |
| !! | GGCTGTTTTCAGCCTGCAAC+CGG | - | tig0006807:52435-52454 | Msa1344440:intron | 55.0% |
| ! | TTTTCCTGGCAACCGGTTGC+AGG | + | tig0006807:52450-52469 | None:intergenic | 55.0% |
| CAACGCAAGACCCTGAGTCA+AGG | + | tig0006807:55392-55411 | None:intergenic | 55.0% | |
| TGACTCAGGGTCTTGCGTTG+CGG | - | tig0006807:55392-55411 | Msa1344440:CDS | 55.0% | |
| TGCGGTTGCGGCAATAACAG+TGG | - | tig0006807:55410-55429 | Msa1344440:CDS | 55.0% | |
| AGGGTCTTGCGTTGCGGTTG+CGG | - | tig0006807:55398-55417 | Msa1344440:CDS | 60.0% | |
| TCAGCCTGCAACCGGTTGCC+AGG | - | tig0006807:52443-52462 | Msa1344440:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006807 | gene | 49212 | 55642 | 49212 | ID=Msa1344440;Name=Msa1344440 |
| tig0006807 | mRNA | 49212 | 55642 | 49212 | ID=Msa1344440-mRNA-1;Parent=Msa1344440;Name=Msa1344440-mRNA-1;_AED=0.12;_eAED=0.12;_QI=62|1|1|1|0.6|0.33|6|404|191 |
| tig0006807 | exon | 49212 | 49573 | 49212 | ID=Msa1344440-mRNA-1:exon:4533;Parent=Msa1344440-mRNA-1 |
| tig0006807 | exon | 54628 | 54700 | 54628 | ID=Msa1344440-mRNA-1:exon:4532;Parent=Msa1344440-mRNA-1 |
| tig0006807 | exon | 54802 | 54878 | 54802 | ID=Msa1344440-mRNA-1:exon:4531;Parent=Msa1344440-mRNA-1 |
| tig0006807 | exon | 54968 | 55054 | 54968 | ID=Msa1344440-mRNA-1:exon:4530;Parent=Msa1344440-mRNA-1 |
| tig0006807 | exon | 55180 | 55597 | 55180 | ID=Msa1344440-mRNA-1:exon:4529;Parent=Msa1344440-mRNA-1 |
| tig0006807 | exon | 55618 | 55642 | 55618 | ID=Msa1344440-mRNA-1:exon:4528;Parent=Msa1344440-mRNA-1 |
| tig0006807 | five_prime_UTR | 55618 | 55642 | 55618 | ID=Msa1344440-mRNA-1:five_prime_utr;Parent=Msa1344440-mRNA-1 |
| tig0006807 | five_prime_UTR | 55561 | 55597 | 55561 | ID=Msa1344440-mRNA-1:five_prime_utr;Parent=Msa1344440-mRNA-1 |
| tig0006807 | CDS | 55180 | 55560 | 55180 | ID=Msa1344440-mRNA-1:cds;Parent=Msa1344440-mRNA-1 |
| tig0006807 | CDS | 54968 | 55054 | 54968 | ID=Msa1344440-mRNA-1:cds;Parent=Msa1344440-mRNA-1 |
| tig0006807 | CDS | 54802 | 54878 | 54802 | ID=Msa1344440-mRNA-1:cds;Parent=Msa1344440-mRNA-1 |
| tig0006807 | CDS | 54670 | 54700 | 54670 | ID=Msa1344440-mRNA-1:cds;Parent=Msa1344440-mRNA-1 |
| tig0006807 | three_prime_UTR | 54628 | 54669 | 54628 | ID=Msa1344440-mRNA-1:three_prime_utr;Parent=Msa1344440-mRNA-1 |
| tig0006807 | three_prime_UTR | 49212 | 49573 | 49212 | ID=Msa1344440-mRNA-1:three_prime_utr;Parent=Msa1344440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
