AlfalfaGEDB | Msa0135990

M. sativa cultivar zhongmu-4 / Msa0135990

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135990	XP_013469974.1	92.347	196	10	4	1	191	3	198	1.84e-114	333

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135990	sp\|Q8L9K4\|SOFL5_ARATH	41.040	173	77	9	9	169	5	164	2.00e-20	86.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135990	A0A072VQE3	92.347	196	10	4	1	191	3	198	8.80e-115	333

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0024680	Msa0135990	0.802716	4.915564e-49	-8.615850e-47
Msa0032840	Msa0135990	-0.801838	7.452993e-49	-8.615850e-47
Msa0041620	Msa0135990	0.841609	4.283046e-58	-8.615850e-47
Msa0089200	Msa0135990	0.842808	2.061837e-58	-8.615850e-47
Msa0120330	Msa0135990	0.800643	1.308800e-48	-8.615850e-47
Msa0135990	Msa0200950	-0.808975	2.377363e-50	-8.615850e-47
Msa0135990	Msa0222920	0.825620	4.244745e-54	-8.615850e-47
Msa0135990	Msa0259860	-0.805064	1.599071e-49	-8.615850e-47
Msa0135990	Msa0264350	0.821766	3.391267e-53	-8.615850e-47
Msa0135990	Msa0302450	0.822423	2.387965e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135990	MtrunA17_Chr1g0207011	92.347	196	10	4	1	191	3	198	1.70e-118	333
Msa0135990	MtrunA17_Chr5g0393821	50.510	196	72	11	1	187	1	180	5.48e-42	139

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135990	AT4G33800.2	41.040	173	77	9	9	169	5	164	2.03e-21	86.7
Msa0135990	AT4G33800.1	41.040	173	77	9	9	169	5	164	2.03e-21	86.7

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Find 57 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAGTATTCTGAAGGAG+TGG	0.595088	1_3:-67777633	Msa0135990:CDS
AAATTGTTCTTCCTGGTATG+AGG	0.406008	1_3:+67777086	None:intergenic
AACATGGAATTTGGAAGGAG+AGG	0.586422	1_3:+67773007	Msa0135980:CDS
AACTGTTAGTGCCATTAACA+TGG	0.549756	1_3:-67772903	Msa0135990:three_prime_UTR
AAGAGGCGATGAGTTCTATA+GGG	0.479187	1_3:+67772876	Msa0135980:exon
AATATGGTAGACTATTCACA+AGG	0.724521	1_3:-67777230	Msa0135990:CDS
ACAAACCAACAAAGTTATGT+AGG	0.515352	1_3:-67777254	Msa0135990:CDS
ACAAAGTTATGTAGGAAATA+TGG	0.330154	1_3:-67777246	Msa0135990:CDS
ACATCATCATGTGGAAGATG+TGG	0.558107	1_3:+67777572	None:intergenic
AGAAGCAATGTCCTTGACTC+AGG	0.482163	1_3:-67773073	Msa0135990:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGATTCTGAATGTAGTAG+TGG	-	chr1_3:67772904-67772923	Msa0135990:three_prime_UTR	30.0%
TTGAAGTAAACATCATCATG+TGG	+	chr1_3:67773108-67773127	Msa0135980:intron	30.0%
ACAAACCAACAAAGTTATGT+AGG	-	chr1_3:67773414-67773433	Msa0135990:intron	30.0%
AATATGGTAGACTATTCACA+AGG	-	chr1_3:67773438-67773457	Msa0135990:intron	30.0%
AAAAACCAAATTGTTCTTCC+TGG	+	chr1_3:67773592-67773611	Msa0135980:exon	30.0%
CTCTCAAAAAATGAACTTCA+AGG	-	chr1_3:67773623-67773642	Msa0135990:intron	30.0%
ACAAGCTAATTTAGTTAGGA+AGG	-	chr1_3:67773959-67773978	Msa0135990:intron	30.0%
GTTGTATATTACTCAACCTT+CGG	-	chr1_3:67774221-67774240	Msa0135990:intron	30.0%
GGAATTTGACAAAATTACGA+GGG	+	chr1_3:67774810-67774829	None:intergenic	30.0%
AGGAATTTGACAAAATTACG+AGG	+	chr1_3:67774811-67774830	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	67772831	67777859	67772831	ID=Msa0135990;Name=Msa0135990
chr1_3	mRNA	67772831	67777859	67772831	ID=Msa0135990-mRNA-1;Parent=Msa0135990;Name=Msa0135990-mRNA-1;_AED=0.14;_eAED=0.14;_QI=64\|1\|1\|1\|0.75\|0.6\|5\|401\|191
chr1_3	exon	67772831	67773185	67772831	ID=Msa0135990-mRNA-1:exon:23314;Parent=Msa0135990-mRNA-1
chr1_3	exon	67776861	67776937	67776861	ID=Msa0135990-mRNA-1:exon:23313;Parent=Msa0135990-mRNA-1
chr1_3	exon	67777039	67777115	67777039	ID=Msa0135990-mRNA-1:exon:23312;Parent=Msa0135990-mRNA-1
chr1_3	exon	67777205	67777291	67777205	ID=Msa0135990-mRNA-1:exon:23311;Parent=Msa0135990-mRNA-1
chr1_3	exon	67777415	67777859	67777415	ID=Msa0135990-mRNA-1:exon:23310;Parent=Msa0135990-mRNA-1
chr1_3	five_prime_UTR	67777796	67777859	67777796	ID=Msa0135990-mRNA-1:five_prime_utr;Parent=Msa0135990-mRNA-1
chr1_3	CDS	67777415	67777795	67777415	ID=Msa0135990-mRNA-1:cds;Parent=Msa0135990-mRNA-1
chr1_3	CDS	67777205	67777291	67777205	ID=Msa0135990-mRNA-1:cds;Parent=Msa0135990-mRNA-1
chr1_3	CDS	67777039	67777115	67777039	ID=Msa0135990-mRNA-1:cds;Parent=Msa0135990-mRNA-1
chr1_3	CDS	67776907	67776937	67776907	ID=Msa0135990-mRNA-1:cds;Parent=Msa0135990-mRNA-1
chr1_3	three_prime_UTR	67776861	67776906	67776861	ID=Msa0135990-mRNA-1:three_prime_utr;Parent=Msa0135990-mRNA-1
chr1_3	three_prime_UTR	67772831	67773185	67772831	ID=Msa0135990-mRNA-1:three_prime_utr;Parent=Msa0135990-mRNA-1

Gene Sequence

>Msa0135990

ATGAGTGCATTTGATTCTGAATGTAGTAGTGGATGTGAGTCAGGTTGGACTCTATACCTTGAACATTCTTATGAAAACACTAGATTCATAGGTGGAACTGAAGGGTACTATGGAAACCAACACAGAGACAAAAGAGTCACAAATGAGTATTCTGAAGGAGTGGAAGATTTGTCTATGGTTTCTGATGCTTCTTCTGGTCCTCCACATCTTCCACATGATGATGTTTACTTCAATGAGAAAGACAATGTAGTGAAAAAGCACAAGAAAGGTACAAAGAAACAGAAAGTTGGAGAAAATAAACAACATGATGTTGAAGATCAACAACACCTTCCTTCTTTTCTTCATGACACTGCTAGCTCTCATGTCTTTGACTTTTCAACTACCAATGTTGTTGGGACAAACCAACAAAGTTATGTAGGAAATATGGTAGACTATTCACAAGGTTTTTCAGCAACTAATTATTTTGAGGGAAAATCCTCATACCAGGAAGAACAATTTGGTTTTTTACAACCATCTCTCTCAAAAAATGAACTTCAAGGAAACAACTGGTATGGAGGAAAAAATCAGTTCTATTAA

Protein sequence

>Msa0135990

MSAFDSECSSGCESGWTLYLEHSYENTRFIGGTEGYYGNQHRDKRVTNEYSEGVEDLSMVSDASSGPPHLPHDDVYFNEKDNVVKKHKKGTKKQKVGENKQHDVEDQQHLPSFLHDTASSHVFDFSTTNVVGTNQQSYVGNMVDYSQGFSATNYFEGKSSYQEEQFGFLQPSLSKNELQGNNWYGGKNQFY*