Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346780 | XP_024640922.1 | 89.335 | 647 | 24 | 4 | 1 | 611 | 1 | 638 | 0.0 | 1073 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346780 | sp|Q04832|HEXP_LEIMA | 35.326 | 184 | 92 | 8 | 292 | 459 | 99 | 271 | 5.39e-15 | 79.0 |
| Msa1346780 | sp|Q04832|HEXP_LEIMA | 33.168 | 202 | 91 | 11 | 291 | 456 | 44 | 237 | 4.18e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346780 | A0A396HXU5 | 89.335 | 647 | 24 | 4 | 1 | 611 | 1 | 638 | 0.0 | 1073 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0860650 | Msa1346780 | 0.866851 | 2.106387e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346780 | MtrunA17_Chr5g0439981 | 89.335 | 647 | 24 | 4 | 1 | 611 | 1 | 638 | 0.0 | 1073 |
| Msa1346780 | MtrunA17_Chr3g0119021 | 54.491 | 334 | 135 | 5 | 191 | 524 | 62 | 378 | 2.17e-117 | 361 |
| Msa1346780 | MtrunA17_Chr3g0119021 | 39.815 | 108 | 54 | 4 | 505 | 605 | 451 | 554 | 3.75e-11 | 65.9 |
| Msa1346780 | MtrunA17_Chr3g0080991 | 26.374 | 182 | 99 | 4 | 291 | 457 | 1458 | 1619 | 5.77e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346780 | AT3G43590.1 | 41.935 | 403 | 162 | 15 | 250 | 595 | 119 | 506 | 2.28e-78 | 258 |
| Msa1346780 | AT5G36240.1 | 48.598 | 107 | 51 | 1 | 356 | 462 | 21 | 123 | 5.15e-27 | 110 |
| Msa1346780 | AT4G36020.1 | 31.073 | 177 | 99 | 6 | 292 | 458 | 134 | 297 | 3.88e-14 | 73.9 |
| Msa1346780 | AT4G36020.3 | 31.073 | 177 | 99 | 6 | 292 | 458 | 134 | 297 | 3.88e-14 | 73.9 |
| Msa1346780 | AT3G43490.1 | 48.649 | 74 | 33 | 3 | 250 | 322 | 107 | 176 | 3.63e-13 | 70.5 |
| Msa1346780 | AT4G36020.2 | 30.286 | 175 | 101 | 5 | 292 | 458 | 102 | 263 | 2.21e-11 | 65.1 |
Find 129 sgRNAs with CRISPR-Local
Find 427 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGTGACCATTCTCTTTC+TGG | 0.047501 | tig0009225:+121305 | Msa1346780:intergenic |
| TCAATTCCAAAAGGGATAAT+TGG | 0.179915 | tig0009225:-121141 | Msa1346780:CDS |
| AACAAAGCTATATTATAATT+AGG | 0.180762 | tig0009225:-127291 | None:intergenic |
| TGCTTGAGATGCGGGAATTC+TGG | 0.184551 | tig0009225:-122920 | Msa1346780:CDS |
| CCATTCTCTTTCTGGGATCT+TGG | 0.213203 | tig0009225:+121313 | Msa1346780:intergenic |
| GAGCCACCTGTGTGCTTCTT+TGG | 0.215455 | tig0009225:+122965 | Msa1346780:intergenic |
| TATAATCTAGACTAGATTTC+TGG | 0.245941 | tig0009225:+120894 | Msa1346780:intergenic |
| TTATTAGTACATGGTGTTAT+TGG | 0.261119 | tig0009225:+121112 | Msa1346780:intergenic |
| AGACCTCCAATTATCCCTTT+TGG | 0.273678 | tig0009225:+121135 | Msa1346780:intergenic |
| TACGAGCGACAGTGTTGTTC+TGG | 0.275881 | tig0009225:-124549 | Msa1346780:CDS |
| TCACCAGGTACCACTTTCTC+TGG | 0.278896 | tig0009225:+123942 | Msa1346780:intergenic |
| CTGGTTGATCCTTCTGAATT+AGG | 0.282005 | tig0009225:+121007 | Msa1346780:intergenic |
| ATCCTCCATCAGATAATGTT+TGG | 0.299939 | tig0009225:-123746 | Msa1346780:CDS |
| TGCTATGTGTGCAAGAAATT+TGG | 0.301951 | tig0009225:-122673 | Msa1346780:CDS |
| ACAAAGCTATATTATAATTA+GGG | 0.305226 | tig0009225:-127290 | None:intergenic |
| TACGAGCGACAATGTTGTTC+TGG | 0.310663 | tig0009225:-126058 | Msa1346780:CDS |
| ATCATGGGTACTCAGCTTCT+AGG | 0.334635 | tig0009225:-120976 | Msa1346780:CDS |
| CATGTGACCATTCTCTTTCT+GGG | 0.345575 | tig0009225:+121306 | Msa1346780:intergenic |
| TCCACAAAACGGCGCCGTAT+TGG | 0.355270 | tig0009225:-127063 | Msa1346780:CDS |
| TTGCTACAAATGTGGTCAAA+TGG | 0.365243 | tig0009225:-122602 | Msa1346780:CDS |
| TCCTCCATCAGATAATGTTT+GGG | 0.366216 | tig0009225:-123745 | Msa1346780:CDS |
| TTGTAGCAAGAAAATTCTTT+TGG | 0.368351 | tig0009225:+122616 | Msa1346780:intergenic |
| TGTAGCTGGATCGGTGTTCT+CGG | 0.372922 | tig0009225:+121614 | Msa1346780:intergenic |
| AGATCTGCACCTTATGATAA+TGG | 0.377830 | tig0009225:-121277 | Msa1346780:CDS |
| GGTTGGACGGCAGAGCATTC+TGG | 0.390535 | tig0009225:-121178 | Msa1346780:CDS |
| GCTTGAGATGCGGGAATTCT+GGG | 0.391339 | tig0009225:-122919 | Msa1346780:CDS |
| TAACAGAACTTGAGCATTCT+CGG | 0.403761 | tig0009225:+121550 | Msa1346780:intergenic |
| TAACTTTATTTCATTGAACT+TGG | 0.404125 | tig0009225:-120788 | Msa1346780:three_prime_UTR |
| TCGGTGACCAGCTAGCTTGC+AGG | 0.405953 | tig0009225:+123000 | Msa1346780:intergenic |
| AACTTTATTTCATTGAACTT+GGG | 0.413801 | tig0009225:-120787 | Msa1346780:three_prime_UTR |
| CGCCTCCTCAGGTAGGCAAC+AGG | 0.425438 | tig0009225:-121363 | Msa1346780:intron |
| CTCAAATTGAACTTCAAGAT+GGG | 0.426576 | tig0009225:-127257 | Msa1346780:exon |
| GAGAATGCTGAGGTGGAAAC+AGG | 0.427588 | tig0009225:-124581 | Msa1346780:CDS |
| TGTTTGTCTCATCTTCCAAA+TGG | 0.432554 | tig0009225:-120735 | Msa1346780:three_prime_UTR |
| AGGAGATTAAGACTAAGAAA+AGG | 0.443967 | tig0009225:-124415 | Msa1346780:CDS |
| TTGAGAGAAGTTACAACAAC+GGG | 0.444049 | tig0009225:-120928 | Msa1346780:CDS |
| GCTCAAGTCAAAGTCCCATT+TGG | 0.445916 | tig0009225:+120720 | Msa1346780:intergenic |
| CTTGGTTCTGCTGCTTCACC+AGG | 0.448212 | tig0009225:+123927 | Msa1346780:intergenic |
| TGCTATAACTGCGGCGAAGA+AGG | 0.451788 | tig0009225:-123717 | Msa1346780:CDS |
| CTATTGTTACCATTATCATA+AGG | 0.452102 | tig0009225:+121268 | Msa1346780:intergenic |
| GCTCAAATTGAACTTCAAGA+TGG | 0.455569 | tig0009225:-127258 | Msa1346780:exon |
| TGCTATAGGTGTGGTGAAGA+AGG | 0.457323 | tig0009225:-121582 | Msa1346780:CDS |
| CTACACCTAGTTCATGCTAT+AGG | 0.459190 | tig0009225:-121596 | Msa1346780:CDS |
| TGTGGTCAAATGGGTCATAT+TGG | 0.459786 | tig0009225:-122592 | Msa1346780:CDS |
| GTTTGTCTCATCTTCCAAAT+GGG | 0.459851 | tig0009225:-120734 | Msa1346780:three_prime_UTR |
| AATCTCCTCGCTATGTGATT+CGG | 0.459928 | tig0009225:+125939 | Msa1346780:intergenic |
| GGGTACTCAGCTTCTAGGTT+TGG | 0.461563 | tig0009225:-120971 | Msa1346780:CDS |
| TGCTACAAATGTGGTCAAAT+GGG | 0.462382 | tig0009225:-122601 | Msa1346780:CDS |
| TAGCATGAACTAGGTGTAGC+TGG | 0.463123 | tig0009225:+121600 | Msa1346780:intergenic |
| TCTCTCCATTCAATTCCAAA+AGG | 0.464550 | tig0009225:-121150 | Msa1346780:CDS |
| AATCTCCTCACTATGCAATT+CGG | 0.465805 | tig0009225:+124430 | Msa1346780:intergenic |
| CTCTCCATTCAATTCCAAAA+GGG | 0.471075 | tig0009225:-121149 | Msa1346780:CDS |
| TTCAACTCACAAGCAGCTTA+CGG | 0.471177 | tig0009225:+123874 | Msa1346780:intergenic |
| TGACAGTATGCTTGAGATGC+GGG | 0.479083 | tig0009225:-122928 | Msa1346780:CDS |
| TGCTCTACCTGCAAGCTAGC+TGG | 0.479633 | tig0009225:-123007 | Msa1346780:CDS |
| GGCAGTTTGAGTCATAATAA+TGG | 0.485509 | tig0009225:-123639 | Msa1346780:CDS |
| AGAATGCTCAAGTTCTGTTA+AGG | 0.487479 | tig0009225:-121547 | Msa1346780:intron |
| ACTTTATTTCATTGAACTTG+GGG | 0.488124 | tig0009225:-120786 | Msa1346780:three_prime_UTR |
| ACGAGCGACAGTGTTGTTCT+GGG | 0.489480 | tig0009225:-124548 | Msa1346780:intron |
| TTGTATTGACACAGCATAAG+TGG | 0.489891 | tig0009225:+122650 | Msa1346780:intergenic |
| CACAGACAGTAAAGAAGAAG+AGG | 0.492551 | tig0009225:-127037 | Msa1346780:CDS |
| CACCAGGTACCACTTTCTCT+GGG | 0.492731 | tig0009225:+123943 | Msa1346780:intergenic |
| AACAGAACTTGAGCATTCTC+GGG | 0.493802 | tig0009225:+121551 | Msa1346780:intergenic |
| TTTGGCAACTCGAGTAGTAA+TGG | 0.502010 | tig0009225:-120953 | Msa1346780:CDS |
| GTAGCTGGATCGGTGTTCTC+GGG | 0.507990 | tig0009225:+121615 | Msa1346780:intergenic |
| GGAGCATGCTAAAGTGGAAA+CGG | 0.511195 | tig0009225:-126091 | Msa1346780:CDS |
| GAGCATGCTAAAGTGGAAAC+GGG | 0.512109 | tig0009225:-126090 | Msa1346780:CDS |
| TTTACGCGGAATGTTCATGA+TGG | 0.518252 | tig0009225:-121034 | Msa1346780:CDS |
| ACGAGCGACAATGTTGTTCT+GGG | 0.519892 | tig0009225:-126057 | Msa1346780:intron |
| AAAAGTGGAGCATGCTAAAG+TGG | 0.521401 | tig0009225:-126097 | Msa1346780:CDS |
| CCATGCTTCTTTCAACTGTA+CGG | 0.523223 | tig0009225:-123694 | Msa1346780:CDS |
| CGTGCAATTACTCCACAAAA+CGG | 0.529795 | tig0009225:-127074 | Msa1346780:CDS |
| GTCAAATGGGTCATATTGGT+TGG | 0.532078 | tig0009225:-122588 | Msa1346780:CDS |
| CCAAGATCCCAGAAAGAGAA+TGG | 0.532653 | tig0009225:-121313 | Msa1346780:CDS |
| TCAAATGGGTCATATTGGTT+GGG | 0.533954 | tig0009225:-122587 | Msa1346780:intron |
| TACTGTCTGTGTATCCAATA+CGG | 0.537948 | tig0009225:+127049 | Msa1346780:intergenic |
| ATTCCAAAAGGGATAATTGG+AGG | 0.538088 | tig0009225:-121138 | Msa1346780:CDS |
| GATTGAAGACCCAGAGAAAG+TGG | 0.538571 | tig0009225:-123952 | Msa1346780:CDS |
| TGATGGAGGATCAAAATACC+TGG | 0.539246 | tig0009225:+123758 | Msa1346780:intergenic |
| CCACACCTATAGCATGAACT+AGG | 0.541534 | tig0009225:+121591 | Msa1346780:intergenic |
| CTCACTATGCAATTCGGAAG+CGG | 0.544861 | tig0009225:+124436 | Msa1346780:intergenic |
| TTGCTCGTATTAACCACCCT+TGG | 0.550857 | tig0009225:+123909 | Msa1346780:intergenic |
| TCTTTGGACAGTCGCTACTT+CGG | 0.554717 | tig0009225:+122981 | Msa1346780:intergenic |
| AATCAAAACATAGAGGTGGT+TGG | 0.555688 | tig0009225:-121195 | Msa1346780:CDS |
| GATACAGAGAATAAATGAGA+AGG | 0.556502 | tig0009225:+120826 | Msa1346780:intergenic |
| TGAACTAGGTGTAGCTGGAT+CGG | 0.558727 | tig0009225:+121605 | Msa1346780:intergenic |
| GAAGATAGAGCTCGAAGAAG+AGG | 0.560360 | tig0009225:-127213 | Msa1346780:CDS |
| TGCTAAAGTGGAAACGGGCA+TGG | 0.560522 | tig0009225:-126085 | Msa1346780:CDS |
| TCTATCATCAGCGTGGTCCC+AGG | 0.561332 | tig0009225:-123776 | Msa1346780:intron |
| CCAGAAAGAGAATGGTCACA+TGG | 0.563687 | tig0009225:-121305 | Msa1346780:CDS |
| TTAGTACTATTATTAGTACA+TGG | 0.564178 | tig0009225:+121103 | Msa1346780:intergenic |
| AGAAGAGGAGCTCGAAGAAG+AGG | 0.564643 | tig0009225:-127198 | Msa1346780:CDS |
| GTTCCCCAAACATTATCTGA+TGG | 0.574988 | tig0009225:+123741 | Msa1346780:intergenic |
| TGATGATGAAGAAGCAAACA+AGG | 0.576755 | tig0009225:-127135 | Msa1346780:CDS |
| GACCCAGAGAAAGTGGTACC+TGG | 0.583600 | tig0009225:-123945 | Msa1346780:CDS |
| GATGGAACTCCTAATTCAGA+AGG | 0.593536 | tig0009225:-121016 | Msa1346780:CDS |
| TGGTGAAGCAGCAGAACCAA+GGG | 0.595481 | tig0009225:-123925 | Msa1346780:CDS |
| CTTTATTTCATTGAACTTGG+GGG | 0.596067 | tig0009225:-120785 | Msa1346780:three_prime_UTR |
| TTTATTTCATTGAACTTGGG+GGG | 0.596254 | tig0009225:-120784 | Msa1346780:three_prime_UTR |
| ATACAGAGAATAAATGAGAA+GGG | 0.599076 | tig0009225:+120827 | Msa1346780:intergenic |
| CTGGTGAAGCAGCAGAACCA+AGG | 0.600199 | tig0009225:-123926 | Msa1346780:CDS |
| AATCAATGCAGGCAAGCTCA+AGG | 0.602295 | tig0009225:-121644 | Msa1346780:intron |
| TGCTGAGGTGGAAACAGGCA+TGG | 0.602770 | tig0009225:-124576 | Msa1346780:CDS |
| AAACTGCCACACACAAAACA+AGG | 0.606860 | tig0009225:+123654 | Msa1346780:intergenic |
| CCCCAAACATTATCTGATGG+AGG | 0.610792 | tig0009225:+123744 | Msa1346780:intergenic |
| CGCTTCCGAATCACATAGCG+AGG | 0.616148 | tig0009225:-125944 | Msa1346780:CDS |
| CGCTTCCGAATTGCATAGTG+AGG | 0.623157 | tig0009225:-124435 | Msa1346780:CDS |
| CTAAAGAAATCAAAACATAG+AGG | 0.627094 | tig0009225:-121202 | Msa1346780:CDS |
| TTGACAGTATGCTTGAGATG+CGG | 0.629516 | tig0009225:-122929 | Msa1346780:CDS |
| TTATTCGCAGGATGATCTCA+AGG | 0.631797 | tig0009225:-122870 | Msa1346780:intron |
| AAAACATAGAGGTGGTTGGA+CGG | 0.633746 | tig0009225:-121191 | Msa1346780:CDS |
| AAAAGTGGAGAATGCTGAGG+TGG | 0.633805 | tig0009225:-124588 | Msa1346780:CDS |
| CCGTACAGTTGAAAGAAGCA+TGG | 0.635614 | tig0009225:+123694 | Msa1346780:intergenic |
| CCTAGTTCATGCTATAGGTG+TGG | 0.643239 | tig0009225:-121591 | Msa1346780:CDS |
| AAGAAATCAAAACATAGAGG+TGG | 0.643325 | tig0009225:-121199 | Msa1346780:CDS |
| AACTCACAAGCAGCTTACGG+AGG | 0.651992 | tig0009225:+123877 | Msa1346780:intergenic |
| AGAGAAGTTACAACAACGGG+TGG | 0.653732 | tig0009225:-120925 | Msa1346780:CDS |
| TGGGGAACATGCTATAACTG+CGG | 0.659213 | tig0009225:-123726 | Msa1346780:CDS |
| GTACCCATGATGAAAAGTCC+TGG | 0.660670 | tig0009225:+120988 | Msa1346780:intergenic |
| GATGGAGGATCAAAATACCT+GGG | 0.663035 | tig0009225:+123759 | Msa1346780:intergenic |
| CCTCCATCAGATAATGTTTG+GGG | 0.668625 | tig0009225:-123744 | Msa1346780:CDS |
| TGTCCAAAGAAGCACACAGG+TGG | 0.675544 | tig0009225:-122968 | Msa1346780:CDS |
| CAGAAAGAGAATGGTCACAT+GGG | 0.677130 | tig0009225:-121304 | Msa1346780:CDS |
| TGAAGCAGCAGAACCAAGGG+TGG | 0.678993 | tig0009225:-123922 | Msa1346780:CDS |
| CTAATTCAGAAGGATCAACC+AGG | 0.685700 | tig0009225:-121006 | Msa1346780:CDS |
| TTTGAGAGAAGTTACAACAA+CGG | 0.685995 | tig0009225:-120929 | Msa1346780:CDS |
| GACTGTCCAAAGAAGCACAC+AGG | 0.690399 | tig0009225:-122971 | Msa1346780:CDS |
| CAATGCAGGCAAGCTCAAGG+TGG | 0.698321 | tig0009225:-121641 | Msa1346780:intron |
| GTAACAATAGTAAAATGACA+AGG | 0.737792 | tig0009225:-121255 | Msa1346780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTGTTTTCAA+TGG | - | tig0009225:121086-121105 | Msa1346780:CDS | 10.0% |
| !!! | TTTTTTTTTTTGTTTTCAAT+GGG | - | tig0009225:121087-121106 | Msa1346780:CDS | 10.0% |
| !!! | TCAATTTTATTTTAATACTA+AGG | + | tig0009225:125571-125590 | Msa1346780:intergenic | 10.0% |
| !! | AAAATTCTAAATTAATTAGT+AGG | - | tig0009225:125961-125980 | Msa1346780:intron | 10.0% |
| !! | CTAATAATAATAGATAATAA+TGG | + | tig0009225:126488-126507 | Msa1346780:intergenic | 10.0% |
| !!! | ATTTTTTTCCAATTTTTCAA+TGG | - | tig0009225:121027-121046 | Msa1346780:CDS | 15.0% |
| !!! | ATAATTAGTTTAAGAACATT+TGG | - | tig0009225:121734-121753 | Msa1346780:intron | 15.0% |
| !!! | TAATTAGTTTAAGAACATTT+GGG | - | tig0009225:121735-121754 | Msa1346780:intron | 15.0% |
| !! | ACAAAATTCTGAATATTTAT+AGG | - | tig0009225:122386-122405 | Msa1346780:intron | 15.0% |
| !! | CAAAATTCTGAATATTTATA+GGG | - | tig0009225:122387-122406 | Msa1346780:intron | 15.0% |
| !! | TTAAATTGTTTATTCAAACA+AGG | - | tig0009225:123117-123136 | Msa1346780:intron | 15.0% |
| !!! | CAATTTTTCATTGAAAATAT+GGG | + | tig0009225:123675-123694 | Msa1346780:intergenic | 15.0% |
| !! | TTTAGTTGTCTTAAAATTAT+TGG | + | tig0009225:123834-123853 | Msa1346780:intergenic | 15.0% |
| !!! | CAAAATTAGTTTAAGAATTT+CGG | - | tig0009225:123880-123899 | Msa1346780:intron | 15.0% |
| !! | CAATATTAAAAATAAATCAC+AGG | + | tig0009225:125417-125436 | Msa1346780:intergenic | 15.0% |
| !!! | TATTTATCTTTTCTGTTATT+GGG | - | tig0009225:125776-125795 | Msa1346780:intron | 15.0% |
| !! | CTAATTAATACAAAAACAAT+GGG | + | tig0009225:126075-126094 | Msa1346780:intergenic | 15.0% |
| !! | TCTAATTAATACAAAAACAA+TGG | + | tig0009225:126076-126095 | Msa1346780:intergenic | 15.0% |
| !!! | TTGTTTTTGTATTAATTAGA+AGG | - | tig0009225:126076-126095 | Msa1346780:CDS | 15.0% |
| !!! | TGTTTTTGTATTAATTAGAA+GGG | - | tig0009225:126077-126096 | Msa1346780:CDS | 15.0% |
| !!! | TTTCTATAAATGAAGTTTTA+GGG | + | tig0009225:127202-127221 | Msa1346780:intergenic | 15.0% |
| !!! | ATTTCTATAAATGAAGTTTT+AGG | + | tig0009225:127203-127222 | Msa1346780:intergenic | 15.0% |
| !!! | CAATTTTTCAATGGAAATTT+GGG | - | tig0009225:121036-121055 | Msa1346780:CDS | 20.0% |
| !!! | AATTTTTCAATGGAAATTTG+GGG | - | tig0009225:121037-121056 | Msa1346780:CDS | 20.0% |
| !!! | TTAAGTTGTTTATTCAAACA+AGG | - | tig0009225:121600-121619 | Msa1346780:CDS | 20.0% |
| !! | TTAGTCAGATTAACATTAAA+TGG | - | tig0009225:121660-121679 | Msa1346780:intron | 20.0% |
| !! | ATTAACCCTTGAAAATATAA+GGG | + | tig0009225:122165-122184 | Msa1346780:intergenic | 20.0% |
| !! | AATTAACCCTTGAAAATATA+AGG | + | tig0009225:122166-122185 | Msa1346780:intergenic | 20.0% |
| !! | CAAAACTGTGAATATTTATA+GGG | + | tig0009225:122200-122219 | Msa1346780:intergenic | 20.0% |
| !! | ACAAAACTGTGAATATTTAT+AGG | + | tig0009225:122201-122220 | Msa1346780:intergenic | 20.0% |
| !!! | AAGTGTGATTTTATTTTGTA+GGG | + | tig0009225:122356-122375 | Msa1346780:intergenic | 20.0% |
| !!! | AAAGTGTGATTTTATTTTGT+AGG | + | tig0009225:122355-122374 | Msa1346780:intergenic | 20.0% |
| !!! | ATGTTGATGGAAAATTTTAT+AGG | - | tig0009225:122326-122345 | Msa1346780:intron | 20.0% |
| !!! | TGTTGATGGAAAATTTTATA+GGG | - | tig0009225:122327-122346 | Msa1346780:intron | 20.0% |
| !!! | AAAGTGTGATTTTATTTTGT+AGG | - | tig0009225:122355-122374 | Msa1346780:intron | 20.0% |
| !!! | AAGTGTGATTTTATTTTGTA+GGG | - | tig0009225:122356-122375 | Msa1346780:intron | 20.0% |
| !! | AATAGGGTTAATTAAGTAAA+TGG | + | tig0009225:122414-122433 | Msa1346780:intergenic | 20.0% |
| !!! | TTAATTAACCCTATTTTCAA+TGG | - | tig0009225:122419-122438 | Msa1346780:intron | 20.0% |
| !!! | ATTCTGTGTTATGTTTTTTA+TGG | - | tig0009225:122485-122504 | Msa1346780:intron | 20.0% |
| !! | ATTAATCATTAGAGCAATTT+GGG | + | tig0009225:122559-122578 | Msa1346780:intergenic | 20.0% |
| !! | AATTAATCATTAGAGCAATT+TGG | + | tig0009225:122560-122579 | Msa1346780:intergenic | 20.0% |
| !!! | TTAATTAGTTTCTGTTTAGT+TGG | - | tig0009225:122574-122593 | Msa1346780:intron | 20.0% |
| !! | ATGATTTCATAAACTCAATA+TGG | + | tig0009225:122862-122881 | Msa1346780:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATTCAAACA+AGG | - | tig0009225:121600-121619 | Msa1346780:CDS | 20.0% |
| !! | TAGTCAGATTTAACATTAAA+TGG | - | tig0009225:123178-123197 | Msa1346780:intron | 20.0% |
| !!! | AAATGTTCTTAAACTACTTT+TGG | + | tig0009225:123245-123264 | Msa1346780:intergenic | 20.0% |
| !! | TATAGTTGAAGAAAAACAAA+AGG | - | tig0009225:123318-123337 | Msa1346780:intron | 20.0% |
| !!! | CCAATTTTTCATTGAAAATA+TGG | + | tig0009225:123676-123695 | Msa1346780:intergenic | 20.0% |
| !!! | CCATATTTTCAATGAAAAAT+TGG | - | tig0009225:123673-123692 | Msa1346780:CDS | 20.0% |
| !!! | TTCTATGTTTGTGTTTTTTA+TGG | - | tig0009225:123722-123741 | Msa1346780:CDS | 20.0% |
| !!! | CGAAATTCTTAAACTAATTT+TGG | + | tig0009225:123882-123901 | Msa1346780:intergenic | 20.0% |
| !!! | TTTTGGTATTTTTGAAACAA+TGG | - | tig0009225:123918-123937 | Msa1346780:CDS | 20.0% |
| !!! | GTATTCTTTTTTCTGTTTAA+AGG | - | tig0009225:124377-124396 | Msa1346780:CDS | 20.0% |
| !! | TCAAACTTATTATACATAGT+CGG | + | tig0009225:124423-124442 | Msa1346780:intergenic | 20.0% |
| !!! | ATCAACATTGAAGATTTTTT+TGG | - | tig0009225:124759-124778 | Msa1346780:intron | 20.0% |
| !!! | AATTGGTAAGTTTCATTTTA+TGG | + | tig0009225:124799-124818 | Msa1346780:intergenic | 20.0% |
| !! | ATATGACAAAGTCTATTATA+TGG | + | tig0009225:124841-124860 | Msa1346780:intergenic | 20.0% |
| !! | TATAATAGACTTTGTCATAT+TGG | - | tig0009225:124841-124860 | Msa1346780:intron | 20.0% |
| !! | GCTTAAAAATGTTTATATCA+TGG | - | tig0009225:124873-124892 | Msa1346780:intron | 20.0% |
| !!! | ATTAATGGATAAATCAGATA+TGG | - | tig0009225:125198-125217 | Msa1346780:intron | 20.0% |
| !! | AGGCAAAAAAATGAAATTAA+TGG | + | tig0009225:125492-125511 | Msa1346780:intergenic | 20.0% |
| !!! | ATTTTCAAGATATGTCTATA+AGG | - | tig0009225:125734-125753 | Msa1346780:intron | 20.0% |
| !!! | CTATTTATCTTTTCTGTTAT+TGG | - | tig0009225:125775-125794 | Msa1346780:intron | 20.0% |
| !!! | GTTTTTGTATTAATTAGAAG+GGG | - | tig0009225:126078-126097 | Msa1346780:CDS | 20.0% |
| !! | TAATAGATAATAATGGCAAA+CGG | + | tig0009225:126481-126500 | Msa1346780:intergenic | 20.0% |
| !! | TTAGTACTATTATTAGTACA+TGG | + | tig0009225:126857-126876 | Msa1346780:intergenic | 20.0% |
| !!! | AAAAACCATTTTTACAATAG+TGG | - | tig0009225:126875-126894 | Msa1346780:intron | 20.0% |
| !!! | TAACTTTATTTCATTGAACT+TGG | - | tig0009225:127169-127188 | Msa1346780:CDS | 20.0% |
| !!! | AACTTTATTTCATTGAACTT+GGG | - | tig0009225:127170-127189 | Msa1346780:CDS | 20.0% |
| !! | AAAAAACTTCATCAAATTGT+AGG | + | tig0009225:127270-127289 | Msa1346780:intergenic | 20.0% |
| ! | CCAAATTTCCATTGAAAAAT+TGG | + | tig0009225:121038-121057 | Msa1346780:intergenic | 25.0% |
| !!! | CCAATTTTTCAATGGAAATT+TGG | - | tig0009225:121035-121054 | Msa1346780:CDS | 25.0% |
| !! | TTGTTTTCAATGGGATTTTT+TGG | - | tig0009225:121096-121115 | Msa1346780:CDS | 25.0% |
| ! | TATCAATCTTATACCCTAAT+AGG | + | tig0009225:121626-121645 | Msa1346780:intergenic | 25.0% |
| ! | TTAATCTGACTAACCAATTT+AGG | + | tig0009225:121653-121672 | Msa1346780:intergenic | 25.0% |
| ! | TATAGCTGAAGAAAAAGAAA+AGG | - | tig0009225:121809-121828 | Msa1346780:intron | 25.0% |
| ! | TTAACCCTTGAAAATATAAG+GGG | + | tig0009225:122164-122183 | Msa1346780:intergenic | 25.0% |
| !! | ACATTTTCCTTAAGCATTTT+AGG | - | tig0009225:122264-122283 | Msa1346780:intron | 25.0% |
| !! | CATTTTCCTTAAGCATTTTA+GGG | - | tig0009225:122265-122284 | Msa1346780:intron | 25.0% |
| !! | ATGCTGATGGAAAATTTTAT+AGG | - | tig0009225:122295-122314 | Msa1346780:intron | 25.0% |
| !! | TGCTGATGGAAAATTTTATA+GGG | - | tig0009225:122296-122315 | Msa1346780:intron | 25.0% |
| !! | CCAATTTTCCATTGAAAATA+GGG | + | tig0009225:122430-122449 | Msa1346780:intergenic | 25.0% |
| !! | CCTATTTTCAATGGAAAATT+GGG | - | tig0009225:122428-122447 | Msa1346780:intron | 25.0% |
| ! | GCTTATGAAAATAAGCAAAA+AGG | + | tig0009225:122698-122717 | Msa1346780:intergenic | 25.0% |
| !! | ATTTATCGTATCTTTTGTCA+TGG | - | tig0009225:122770-122789 | Msa1346780:intron | 25.0% |
| ! | ATTAAATTGTTTATCCAGAC+AGG | - | tig0009225:122835-122854 | Msa1346780:intron | 25.0% |
| ! | TTAAATTGTTTATCCAGACA+GGG | - | tig0009225:122836-122855 | Msa1346780:intron | 25.0% |
| ! | TTTCAATCATATATCCTACT+AGG | + | tig0009225:123042-123061 | Msa1346780:intergenic | 25.0% |
| ! | TAATTAAGCTTTGCTTATGT+AGG | - | tig0009225:123291-123310 | Msa1346780:intron | 25.0% |
| ! | TTTCATTGAAAATATGGGTA+GGG | + | tig0009225:123670-123689 | Msa1346780:intergenic | 25.0% |
| !! | TTTTCATTGAAAATATGGGT+AGG | + | tig0009225:123671-123690 | Msa1346780:intergenic | 25.0% |
| ! | CAAACATAGAAAAACTTTCT+TGG | + | tig0009225:123713-123732 | Msa1346780:intergenic | 25.0% |
| ! | TAAAATTATTGGAGCAATCT+GGG | + | tig0009225:123823-123842 | Msa1346780:intergenic | 25.0% |
| ! | TTAAAATTATTGGAGCAATC+TGG | + | tig0009225:123824-123843 | Msa1346780:intergenic | 25.0% |
| !!! | AACAATGGATTGTCTTATAT+AGG | - | tig0009225:123933-123952 | Msa1346780:CDS | 25.0% |
| !! | CATTTTCAATATCACATTTC+AGG | + | tig0009225:124117-124136 | Msa1346780:intergenic | 25.0% |
| ! | CTGAAATGTGATATTGAAAA+TGG | - | tig0009225:124115-124134 | Msa1346780:intron | 25.0% |
| ! | TAATGGCAAAAAATGCATTA+TGG | - | tig0009225:124335-124354 | Msa1346780:intron | 25.0% |
| ! | AAAATGCATTATGGTATGTT+TGG | - | tig0009225:124344-124363 | Msa1346780:intron | 25.0% |
| !!! | CGTTTATTTTTATTAATCCG+CGG | - | tig0009225:124457-124476 | Msa1346780:intron | 25.0% |
| !!! | GTTTATTTTTATTAATCCGC+GGG | - | tig0009225:124458-124477 | Msa1346780:intron | 25.0% |
| ! | AGTTTGATATGTTGTAATAG+CGG | - | tig0009225:124553-124572 | Msa1346780:CDS | 25.0% |
| ! | AAAATCTTCAATGTTGATCA+TGG | + | tig0009225:124757-124776 | Msa1346780:intergenic | 25.0% |
| !! | ATTTCCTTTTATCTTCTGTA+GGG | - | tig0009225:124920-124939 | Msa1346780:intron | 25.0% |
| !! | ATTTTCCTCCTTTTCTTTTA+TGG | - | tig0009225:125136-125155 | Msa1346780:intron | 25.0% |
| !! | TTTTCCTCCTTTTCTTTTAT+GGG | - | tig0009225:125137-125156 | Msa1346780:intron | 25.0% |
| ! | ATAGTTTCCCATAAAAGAAA+AGG | + | tig0009225:125147-125166 | Msa1346780:intergenic | 25.0% |
| ! | TGAGTTCACTTAGTTATTAA+TGG | - | tig0009225:125183-125202 | Msa1346780:intron | 25.0% |
| ! | GTATTTCCTAGTTAAACAAA+GGG | + | tig0009225:125262-125281 | Msa1346780:intergenic | 25.0% |
| ! | TGTATTTCCTAGTTAAACAA+AGG | + | tig0009225:125263-125282 | Msa1346780:intergenic | 25.0% |
| !! | TTGTAGCAAGAAAATTCTTT+TGG | + | tig0009225:125344-125363 | Msa1346780:intergenic | 25.0% |
| !! | TTTTCTTTCCAAAAGTAGTT+AGG | - | tig0009225:125457-125476 | Msa1346780:intron | 25.0% |
| !!! | AATTTCATTTTTTTGCCTAC+TGG | - | tig0009225:125494-125513 | Msa1346780:intron | 25.0% |
| !!! | ATTTCATTTTTTTGCCTACT+GGG | - | tig0009225:125495-125514 | Msa1346780:intron | 25.0% |
| ! | AAATCAAATCAAATTACCCT+TGG | + | tig0009225:125845-125864 | Msa1346780:intergenic | 25.0% |
| ! | TTAATATGAGAAAAGATGAG+AGG | + | tig0009225:125876-125895 | Msa1346780:intergenic | 25.0% |
| !! | TCTCATCTTTTCTCATATTA+AGG | - | tig0009225:125875-125894 | Msa1346780:intron | 25.0% |
| ! | AATTAGTAGGAGATGAATTT+AGG | - | tig0009225:125974-125993 | Msa1346780:intron | 25.0% |
| ! | ATTAGTAGGAGATGAATTTA+GGG | - | tig0009225:125975-125994 | Msa1346780:intron | 25.0% |
| !! | CAAATTTGAGACAAGAAAAA+AGG | + | tig0009225:126018-126037 | Msa1346780:intergenic | 25.0% |
| !!! | CTTTTTTCTTGTCTCAAATT+TGG | - | tig0009225:126016-126035 | Msa1346780:intron | 25.0% |
| ! | CTATTGTTACCATTATCATA+AGG | + | tig0009225:126692-126711 | Msa1346780:intergenic | 25.0% |
| ! | GTAACAATAGTAAAATGACA+AGG | - | tig0009225:126702-126721 | Msa1346780:intron | 25.0% |
| ! | CTAAAGAAATCAAAACATAG+AGG | - | tig0009225:126755-126774 | Msa1346780:intron | 25.0% |
| !!! | TTATTAGTACATGGTGTTAT+TGG | + | tig0009225:126848-126867 | Msa1346780:intergenic | 25.0% |
| ! | TATAATCTAGACTAGATTTC+TGG | + | tig0009225:127066-127085 | Msa1346780:intergenic | 25.0% |
| ! | ATACAGAGAATAAATGAGAA+GGG | + | tig0009225:127133-127152 | Msa1346780:intergenic | 25.0% |
| !! | ACTTTATTTCATTGAACTTG+GGG | - | tig0009225:127171-127190 | Msa1346780:CDS | 25.0% |
| CTCAAATTGAACTTCAAGAT+GGG | - | tig0009225:120700-120719 | Msa1346780:three_prime_UTR | 30.0% | |
| !!! | TGGAAATTTGGGGTTTTTTT+TGG | - | tig0009225:121047-121066 | Msa1346780:CDS | 30.0% |
| !!! | ACTTGTGAATTGTTTTAGAG+CGG | - | tig0009225:121152-121171 | Msa1346780:CDS | 30.0% |
| GTTTACTTGAGCTTAATTAG+TGG | - | tig0009225:121184-121203 | Msa1346780:CDS | 30.0% | |
| TAAGAACTTGTAAGAGTGAT+TGG | - | tig0009225:121209-121228 | Msa1346780:CDS | 30.0% | |
| AAGAACTTGTAAGAGTGATT+GGG | - | tig0009225:121210-121229 | Msa1346780:CDS | 30.0% | |
| !! | CTTATTTTCATAAGTTCTCG+AGG | - | tig0009225:121285-121304 | Msa1346780:CDS | 30.0% |
| !! | ATTAAGTTGTTTCTCCAAAC+AGG | - | tig0009225:121416-121435 | Msa1346780:intron | 30.0% |
| !! | TTAAGTTGTTTCTCCAAACA+GGG | - | tig0009225:121417-121436 | Msa1346780:intron | 30.0% |
| TAAGCTATCATTGAAAGCTA+AGG | + | tig0009225:121502-121521 | Msa1346780:intergenic | 30.0% | |
| TTATTCAAACAAGGCCTATT+AGG | - | tig0009225:121609-121628 | Msa1346780:CDS | 30.0% | |
| TATTCAAACAAGGCCTATTA+GGG | - | tig0009225:121610-121629 | Msa1346780:CDS | 30.0% | |
| AGATTGATACACACCTAAAT+TGG | - | tig0009225:121637-121656 | Msa1346780:intron | 30.0% | |
| !!! | CGTGTTTTTTGAAACTAACT+TGG | - | tig0009225:121767-121786 | Msa1346780:intron | 30.0% |
| ! | TTTACCCCCTTATATTTTCA+AGG | - | tig0009225:122156-122175 | Msa1346780:intron | 30.0% |
| ! | TTACCCCCTTATATTTTCAA+GGG | - | tig0009225:122157-122176 | Msa1346780:intron | 30.0% |
| TAACCCTTGAAAATATAAGG+GGG | + | tig0009225:122163-122182 | Msa1346780:intergenic | 30.0% | |
| TTTAGTCCCTAAAATGCTTA+AGG | + | tig0009225:122274-122293 | Msa1346780:intergenic | 30.0% | |
| ATAGGGACTAAAAATGTTGA+TGG | - | tig0009225:122313-122332 | Msa1346780:intron | 30.0% | |
| ! | CCCTATTTTCAATGGAAAAT+TGG | - | tig0009225:122427-122446 | Msa1346780:intron | 30.0% |
| ! | CCCAATTTTCCATTGAAAAT+AGG | + | tig0009225:122431-122450 | Msa1346780:intergenic | 30.0% |
| TTACTCTCTAAACACTACAA+GGG | - | tig0009225:122518-122537 | Msa1346780:intron | 30.0% | |
| TAGTTTCTGTTTAGTTGGAT+TGG | - | tig0009225:122579-122598 | Msa1346780:intron | 30.0% | |
| !!! | TTTTTTTCGAGCTTATCTAG+TGG | - | tig0009225:122602-122621 | Msa1346780:CDS | 30.0% |
| !! | CTTATTTTCATAAGCTCTCT+AGG | - | tig0009225:122703-122722 | Msa1346780:intron | 30.0% |
| AATAAGTTATCTCCCAGTTT+AGG | + | tig0009225:123069-123088 | Msa1346780:intergenic | 30.0% | |
| TAAATCTGACTAACCAAGTT+AGG | + | tig0009225:123170-123189 | Msa1346780:intergenic | 30.0% | |
| ATGCTATGCTAACATTGTAT+TGG | - | tig0009225:123480-123499 | Msa1346780:intron | 30.0% | |
| AGGAGATTAAGACTAAGAAA+AGG | - | tig0009225:123542-123561 | Msa1346780:intron | 30.0% | |
| TTCATTGAAAATATGGGTAG+GGG | + | tig0009225:123669-123688 | Msa1346780:intergenic | 30.0% | |
| AATGAAAAATTGGCCATTCT+TGG | - | tig0009225:123683-123702 | Msa1346780:CDS | 30.0% | |
| TCTTCTTCAAAAAAGAGGAT+AGG | + | tig0009225:123757-123776 | Msa1346780:intergenic | 30.0% | |
| !!! | GGTTGTGTTTTTTCACTTTT+TGG | - | tig0009225:123901-123920 | Msa1346780:CDS | 30.0% |
| AGAAGAAGAAGAAGAAGAAA+AGG | - | tig0009225:123969-123988 | Msa1346780:CDS | 30.0% | |
| TTCAATGTTGATCATGGAAA+AGG | + | tig0009225:124751-124770 | Msa1346780:intergenic | 30.0% | |
| ATGAAACTTACCAATTTCAG+TGG | - | tig0009225:124803-124822 | Msa1346780:intron | 30.0% | |
| GAAATTCATTCCACTGAAAT+TGG | + | tig0009225:124816-124835 | Msa1346780:intergenic | 30.0% | |
| ! | GATTTCCTTTTATCTTCTGT+AGG | - | tig0009225:124919-124938 | Msa1346780:intron | 30.0% |
| TTTATGGGAAACTATGCTAA+AGG | - | tig0009225:125152-125171 | Msa1346780:intron | 30.0% | |
| ! | GAAACTATGCTAAAGGTTTT+TGG | - | tig0009225:125159-125178 | Msa1346780:intron | 30.0% |
| ! | TGATTTCCCTTTGTTTAACT+AGG | - | tig0009225:125253-125272 | Msa1346780:intron | 30.0% |
| ! | GAATTTTCTTGCTACAAATG+TGG | - | tig0009225:125347-125366 | Msa1346780:intron | 30.0% |
| ! | AAAGCAAACCTAACTACTTT+TGG | + | tig0009225:125468-125487 | Msa1346780:intergenic | 30.0% |
| ATGTTCAAGGTTGAAAAATG+AGG | - | tig0009225:125625-125644 | Msa1346780:intron | 30.0% | |
| CATATTAAGGTTAACTTCCA+AGG | - | tig0009225:125888-125907 | Msa1346780:CDS | 30.0% | |
| TTAGTAGGAGATGAATTTAG+GGG | - | tig0009225:125976-125995 | Msa1346780:intron | 30.0% | |
| ! | TCTCAAATTTGGTTTCAGAT+GGG | - | tig0009225:126027-126046 | Msa1346780:intron | 30.0% |
| CACATTACAATAACCTCTAA+AGG | + | tig0009225:126206-126225 | Msa1346780:intergenic | 30.0% | |
| ! | CTTTAGAGGTTATTGTAATG+TGG | - | tig0009225:126204-126223 | Msa1346780:intron | 30.0% |
| GTGAAGAGATAGATATTATG+TGG | + | tig0009225:126527-126546 | Msa1346780:intergenic | 30.0% | |
| AAGAAATCAAAACATAGAGG+TGG | - | tig0009225:126758-126777 | Msa1346780:intron | 30.0% | |
| !!! | TTATCCCTTTTGGAATTGAA+TGG | + | tig0009225:126815-126834 | Msa1346780:intergenic | 30.0% |
| TCAATTCCAAAAGGGATAAT+TGG | - | tig0009225:126816-126835 | Msa1346780:intron | 30.0% | |
| GACTACCACTATTGTAAAAA+TGG | + | tig0009225:126883-126902 | Msa1346780:intergenic | 30.0% | |
| !!! | TCAGTTCTAAATCTTTTACG+CGG | - | tig0009225:126909-126928 | Msa1346780:intron | 30.0% |
| TTTGAGAGAAGTTACAACAA+CGG | - | tig0009225:127028-127047 | Msa1346780:CDS | 30.0% | |
| GATACAGAGAATAAATGAGA+AGG | + | tig0009225:127134-127153 | Msa1346780:intergenic | 30.0% | |
| ! | CTTTATTTCATTGAACTTGG+GGG | - | tig0009225:127172-127191 | Msa1346780:CDS | 30.0% |
| TTTATTTCATTGAACTTGGG+GGG | - | tig0009225:127173-127192 | Msa1346780:CDS | 30.0% | |
| GCTCAAATTGAACTTCAAGA+TGG | - | tig0009225:120699-120718 | Msa1346780:three_prime_UTR | 35.0% | |
| ! | TGATGATGAAGAAGCAAACA+AGG | - | tig0009225:120822-120841 | Msa1346780:three_prime_UTR | 35.0% |
| !! | GTGCTTTTTGAATAATCTCG+AGG | + | tig0009225:120855-120874 | Msa1346780:intergenic | 35.0% |
| TACTGTCTGTGTATCCAATA+CGG | + | tig0009225:120911-120930 | Msa1346780:intergenic | 35.0% | |
| AGAACTTGTAAGAGTGATTG+GGG | - | tig0009225:121211-121230 | Msa1346780:CDS | 35.0% | |
| GTGCTTACGAAAACATCTTA+TGG | - | tig0009225:121447-121466 | Msa1346780:intron | 35.0% | |
| TGAAAGCTAAGGTGAATAAG+CGG | + | tig0009225:121491-121510 | Msa1346780:intergenic | 35.0% | |
| GACAATCATTAGAGTTACAC+TGG | - | tig0009225:121690-121709 | Msa1346780:intron | 35.0% | |
| TATAACAGCCTACATAAGCA+AGG | + | tig0009225:121793-121812 | Msa1346780:intergenic | 35.0% | |
| ! | AATCAAAGCACCAGAAAAAG+TGG | - | tig0009225:121845-121864 | Msa1346780:intron | 35.0% |
| CAAATATTACAACTCGCAAG+CGG | + | tig0009225:121930-121949 | Msa1346780:intergenic | 35.0% | |
| TGCTTAAGGAAAATGTCACA+GGG | + | tig0009225:122260-122279 | Msa1346780:intergenic | 35.0% | |
| ATGCTTAAGGAAAATGTCAC+AGG | + | tig0009225:122261-122280 | Msa1346780:intergenic | 35.0% | |
| TTAGGGACTAAAAATGCTGA+TGG | - | tig0009225:122282-122301 | Msa1346780:intron | 35.0% | |
| CTTACTCTCTAAACACTACA+AGG | - | tig0009225:122517-122536 | Msa1346780:intron | 35.0% | |
| TAAGAACTCGTGAGATTGTT+TGG | - | tig0009225:122627-122646 | Msa1346780:CDS | 35.0% | |
| CATGTCTATAAGCTGTATTC+AGG | - | tig0009225:122889-122908 | Msa1346780:CDS | 35.0% | |
| TTATTCAAACAAGGCCTAGT+AGG | - | tig0009225:123025-123044 | Msa1346780:intron | 35.0% | |
| TGATTGAAACACACCTAAAC+TGG | - | tig0009225:123053-123072 | Msa1346780:intron | 35.0% | |
| GATTGAAACACACCTAAACT+GGG | - | tig0009225:123054-123073 | Msa1346780:intron | 35.0% | |
| TTATTCAAACAAGGCCTAGT+AGG | - | tig0009225:123025-123044 | Msa1346780:intron | 35.0% | |
| TATTCAAACAAGGCCTAGTA+GGG | - | tig0009225:123026-123045 | Msa1346780:intron | 35.0% | |
| TTTCAGTCATATACCCTACT+AGG | + | tig0009225:123143-123162 | Msa1346780:intergenic | 35.0% | |
| ! | AATCAAAGCACCAGAAAAAG+TGG | - | tig0009225:121845-121864 | Msa1346780:intron | 35.0% |
| ATTGTATTGGATGCCTTGAT+AGG | - | tig0009225:123493-123512 | Msa1346780:intron | 35.0% | |
| AATCTCCTCACTATGCAATT+CGG | + | tig0009225:123530-123549 | Msa1346780:intergenic | 35.0% | |
| CACAGTCTTCTTCAAAAAAG+AGG | + | tig0009225:123762-123781 | Msa1346780:intergenic | 35.0% | |
| ATCCTCCATCAGATAATGTT+TGG | - | tig0009225:124211-124230 | Msa1346780:intron | 35.0% | |
| TCCTCCATCAGATAATGTTT+GGG | - | tig0009225:124212-124231 | Msa1346780:intron | 35.0% | |
| !!! | AAGAAACCTTGTTTTGTGTG+TGG | - | tig0009225:124297-124316 | Msa1346780:intron | 35.0% |
| GGCAGTTTGAGTCATAATAA+TGG | - | tig0009225:124318-124337 | Msa1346780:intron | 35.0% | |
| !! | ATAAGTTTGATCGATTTGCG+TGG | - | tig0009225:124433-124452 | Msa1346780:CDS | 35.0% |
| GCTATAGTGCTACAAAATAG+TGG | - | tig0009225:124577-124596 | Msa1346780:CDS | 35.0% | |
| GTGCAAAAATGATTATTCGC+AGG | - | tig0009225:125075-125094 | Msa1346780:intron | 35.0% | |
| GGAAAATGAAGCGAAAAAGT+TGG | + | tig0009225:125123-125142 | Msa1346780:intergenic | 35.0% | |
| GTTTCCCATAAAAGAAAAGG+AGG | + | tig0009225:125144-125163 | Msa1346780:intergenic | 35.0% | |
| TGCTATGTGTGCAAGAAATT+TGG | - | tig0009225:125284-125303 | Msa1346780:intron | 35.0% | |
| ! | TTGTATTGACACAGCATAAG+TGG | + | tig0009225:125310-125329 | Msa1346780:intergenic | 35.0% |
| TTGCTACAAATGTGGTCAAA+TGG | - | tig0009225:125355-125374 | Msa1346780:intron | 35.0% | |
| TGCTACAAATGTGGTCAAAT+GGG | - | tig0009225:125356-125375 | Msa1346780:intron | 35.0% | |
| ! | TCAAATGGGTCATATTGGTT+GGG | - | tig0009225:125370-125389 | Msa1346780:intron | 35.0% |
| GCATGCTTATGAAGATCAAT+TGG | - | tig0009225:125595-125614 | Msa1346780:intron | 35.0% | |
| TTATGAAGATCAATTGGTGC+AGG | - | tig0009225:125601-125620 | Msa1346780:intron | 35.0% | |
| ATTATAGCATGAACTAGGTG+TGG | + | tig0009225:125663-125682 | Msa1346780:intergenic | 35.0% | |
| CCTAGTTCATGCTATAATTG+CGG | - | tig0009225:125665-125684 | Msa1346780:intron | 35.0% | |
| TAACAGAACTTGAGCATTCT+CGG | + | tig0009225:125709-125728 | Msa1346780:intergenic | 35.0% | |
| AGAATGCTCAAGTTCTGTTA+AGG | - | tig0009225:125709-125728 | Msa1346780:intron | 35.0% | |
| TCTAGACCATCATTTCTGAA+TGG | - | tig0009225:125809-125828 | Msa1346780:intron | 35.0% | |
| !! | AGTTTGGTGTATGTATACCT+TGG | + | tig0009225:125908-125927 | Msa1346780:intergenic | 35.0% |
| ! | GTCTCAAATTTGGTTTCAGA+TGG | - | tig0009225:126026-126045 | Msa1346780:intron | 35.0% |
| !!! | TTTTTTCTGGTCCCTGTTAA+AGG | - | tig0009225:126128-126147 | Msa1346780:CDS | 35.0% |
| !! | TTTTTCTGGTCCCTGTTAAA+GGG | - | tig0009225:126129-126148 | Msa1346780:CDS | 35.0% |
| AACCAAAACACCCTTTAACA+GGG | + | tig0009225:126142-126161 | Msa1346780:intergenic | 35.0% | |
| TAACCAAAACACCCTTTAAC+AGG | + | tig0009225:126143-126162 | Msa1346780:intergenic | 35.0% | |
| !!! | GTTAAAGGGTGTTTTGGTTA+CGG | - | tig0009225:126143-126162 | Msa1346780:CDS | 35.0% |
| !! | TACCTTTTGGTAACAGGTTT+TGG | - | tig0009225:126173-126192 | Msa1346780:intron | 35.0% |
| !! | ACCTTTTGGTAACAGGTTTT+GGG | - | tig0009225:126174-126193 | Msa1346780:intron | 35.0% |
| TAATGAGGATCAATCAATGC+AGG | - | tig0009225:126302-126321 | Msa1346780:intron | 35.0% | |
| TAACAGAACTTGAGCATTCT+CGG | + | tig0009225:125709-125728 | Msa1346780:intergenic | 35.0% | |
| AGAATGCTCAAGTTCTGTTA+AGG | - | tig0009225:125709-125728 | Msa1346780:intron | 35.0% | |
| AGATCTGCACCTTATGATAA+TGG | - | tig0009225:126680-126699 | Msa1346780:intron | 35.0% | |
| AATCAAAACATAGAGGTGGT+TGG | - | tig0009225:126762-126781 | Msa1346780:intron | 35.0% | |
| TCTCTCCATTCAATTCCAAA+AGG | - | tig0009225:126807-126826 | Msa1346780:intron | 35.0% | |
| CTCTCCATTCAATTCCAAAA+GGG | - | tig0009225:126808-126827 | Msa1346780:intron | 35.0% | |
| ATTCCAAAAGGGATAATTGG+AGG | - | tig0009225:126819-126838 | Msa1346780:intron | 35.0% | |
| TTGAGAGAAGTTACAACAAC+GGG | - | tig0009225:127029-127048 | Msa1346780:CDS | 35.0% | |
| TGTTTGTCTCATCTTCCAAA+TGG | - | tig0009225:127222-127241 | Msa1346780:CDS | 35.0% | |
| GTTTGTCTCATCTTCCAAAT+GGG | - | tig0009225:127223-127242 | Msa1346780:CDS | 35.0% | |
| GAACCAAAAAGAAATCAGCG+AGG | - | tig0009225:120722-120741 | Msa1346780:three_prime_UTR | 40.0% | |
| !!! | CTTCCTCGCTGATTTCTTTT+TGG | + | tig0009225:120728-120747 | Msa1346780:intergenic | 40.0% |
| ! | CGTTTTGTGGAGTAATTGCA+CGG | + | tig0009225:120885-120904 | Msa1346780:intergenic | 40.0% |
| CGTGCAATTACTCCACAAAA+CGG | - | tig0009225:120883-120902 | Msa1346780:three_prime_UTR | 40.0% | |
| CACAGACAGTAAAGAAGAAG+AGG | - | tig0009225:120920-120939 | Msa1346780:exon | 40.0% | |
| !!! | TGTTTTAGAGCGGTTTGCAT+TGG | - | tig0009225:121162-121181 | Msa1346780:CDS | 40.0% |
| GTAGCTTACATTAAGCGCTT+AGG | - | tig0009225:121375-121394 | Msa1346780:intron | 40.0% | |
| !! | TAACTTGGCCTTGCTTATGT+AGG | - | tig0009225:121782-121801 | Msa1346780:intron | 40.0% |
| !!! | TTAGCATGCTCCACTTTTTC+TGG | + | tig0009225:121858-121877 | Msa1346780:intergenic | 40.0% |
| AAAAGTGGAGCATGCTAAAG+TGG | - | tig0009225:121860-121879 | Msa1346780:intron | 40.0% | |
| ATGTCGTGCTAACACTGTAT+TGG | - | tig0009225:121971-121990 | Msa1346780:intron | 40.0% | |
| ! | ACTGTATTGGATGCATTGAC+AGG | - | tig0009225:121984-122003 | Msa1346780:intron | 40.0% |
| AATCTCCTCGCTATGTGATT+CGG | + | tig0009225:122021-122040 | Msa1346780:intergenic | 40.0% | |
| !!! | TCAGCATTCTCCACTTTTTC+TGG | + | tig0009225:123367-123386 | Msa1346780:intergenic | 40.0% |
| AGAAAAAGTGGAGAATGCTG+AGG | - | tig0009225:123366-123385 | Msa1346780:intron | 40.0% | |
| TTGAAAATATGGGTAGGGGT+GGG | + | tig0009225:123665-123684 | Msa1346780:intergenic | 40.0% | |
| ATTGAAAATATGGGTAGGGG+TGG | + | tig0009225:123666-123685 | Msa1346780:intergenic | 40.0% | |
| CTTTCTTGGTTGACCAAGAA+TGG | + | tig0009225:123699-123718 | Msa1346780:intergenic | 40.0% | |
| TTCAACTCACAAGCAGCTTA+CGG | + | tig0009225:124086-124105 | Msa1346780:intergenic | 40.0% | |
| CATATACCCAAAGTAAGCCA+TGG | + | tig0009225:124154-124173 | Msa1346780:intergenic | 40.0% | |
| TTTCTGTTCTATCATCAGCG+TGG | - | tig0009225:124174-124193 | Msa1346780:intron | 40.0% | |
| GATGGAGGATCAAAATACCT+GGG | + | tig0009225:124201-124220 | Msa1346780:intergenic | 40.0% | |
| TGATGGAGGATCAAAATACC+TGG | + | tig0009225:124202-124221 | Msa1346780:intergenic | 40.0% | |
| CCTCCATCAGATAATGTTTG+GGG | - | tig0009225:124213-124232 | Msa1346780:intron | 40.0% | |
| GTTCCCCAAACATTATCTGA+TGG | + | tig0009225:124219-124238 | Msa1346780:intergenic | 40.0% | |
| CCATGCTTCTTTCAACTGTA+CGG | - | tig0009225:124263-124282 | Msa1346780:intron | 40.0% | |
| AAACTGCCACACACAAAACA+AGG | + | tig0009225:124306-124325 | Msa1346780:intergenic | 40.0% | |
| ATCGCTTAGCGAAACAATAG+TGG | + | tig0009225:124615-124634 | Msa1346780:intergenic | 40.0% | |
| GTGTTGTCAACCACGAAAAA+TGG | - | tig0009225:124645-124664 | Msa1346780:CDS | 40.0% | |
| TTGTCAACCACGAAAAATGG+TGG | - | tig0009225:124648-124667 | Msa1346780:intron | 40.0% | |
| !! | GAACAAACCACCATTTTTCG+TGG | + | tig0009225:124658-124677 | Msa1346780:intergenic | 40.0% |
| ! | CCTTTTATCTTCTGTAGGGA+CGG | - | tig0009225:124924-124943 | Msa1346780:intron | 40.0% |
| TTGACAGTATGCTTGAGATG+CGG | - | tig0009225:125028-125047 | Msa1346780:intron | 40.0% | |
| TTATTCGCAGGATGATCTCA+AGG | - | tig0009225:125087-125106 | Msa1346780:intron | 40.0% | |
| TGTGGTCAAATGGGTCATAT+TGG | - | tig0009225:125365-125384 | Msa1346780:intron | 40.0% | |
| GTCAAATGGGTCATATTGGT+TGG | - | tig0009225:125369-125388 | Msa1346780:intron | 40.0% | |
| CCGCAATTATAGCATGAACT+AGG | + | tig0009225:125668-125687 | Msa1346780:intergenic | 40.0% | |
| TGCTATAATTGCGGTGAACA+AGG | - | tig0009225:125674-125693 | Msa1346780:intron | 40.0% | |
| AACAGAACTTGAGCATTCTC+GGG | + | tig0009225:125708-125727 | Msa1346780:intergenic | 40.0% | |
| AGAAATGATGGTCTAGATCG+AGG | + | tig0009225:125806-125825 | Msa1346780:intergenic | 40.0% | |
| AGAGAGCCATTCAGAAATGA+TGG | + | tig0009225:125818-125837 | Msa1346780:intergenic | 40.0% | |
| AGACAAGAAAAAAGGTCCCT+CGG | + | tig0009225:126010-126029 | Msa1346780:intergenic | 40.0% | |
| GACCAGAAAAAACAGCTACA+GGG | + | tig0009225:126120-126139 | Msa1346780:intergenic | 40.0% | |
| ACCCAAAACCTGTTACCAAA+AGG | + | tig0009225:126178-126197 | Msa1346780:intergenic | 40.0% | |
| CTACACCTAGTTCATGCTAT+AGG | - | tig0009225:126361-126380 | Msa1346780:intron | 40.0% | |
| AACAGAACTTGAGCATTCTC+GGG | + | tig0009225:125708-125727 | Msa1346780:intergenic | 40.0% | |
| CATGTGACCATTCTCTTTCT+GGG | + | tig0009225:126654-126673 | Msa1346780:intergenic | 40.0% | |
| CAGAAAGAGAATGGTCACAT+GGG | - | tig0009225:126653-126672 | Msa1346780:intron | 40.0% | |
| AAAACATAGAGGTGGTTGGA+CGG | - | tig0009225:126766-126785 | Msa1346780:intron | 40.0% | |
| ! | AGACCTCCAATTATCCCTTT+TGG | + | tig0009225:126825-126844 | Msa1346780:intergenic | 40.0% |
| TTTACGCGGAATGTTCATGA+TGG | - | tig0009225:126923-126942 | Msa1346780:intron | 40.0% | |
| GATGGAACTCCTAATTCAGA+AGG | - | tig0009225:126941-126960 | Msa1346780:intron | 40.0% | |
| CTGGTTGATCCTTCTGAATT+AGG | + | tig0009225:126953-126972 | Msa1346780:intergenic | 40.0% | |
| CTAATTCAGAAGGATCAACC+AGG | - | tig0009225:126951-126970 | Msa1346780:intron | 40.0% | |
| ! | TCAACCAGGACTTTTCATCA+TGG | - | tig0009225:126965-126984 | Msa1346780:intron | 40.0% |
| ! | CAACCAGGACTTTTCATCAT+GGG | - | tig0009225:126966-126985 | Msa1346780:intron | 40.0% |
| TTTGGCAACTCGAGTAGTAA+TGG | - | tig0009225:127004-127023 | Msa1346780:CDS | 40.0% | |
| GAAGATAGAGCTCGAAGAAG+AGG | - | tig0009225:120744-120763 | Msa1346780:three_prime_UTR | 45.0% | |
| AAGCACAATAGAGCCCTGTT+TGG | + | tig0009225:121433-121452 | Msa1346780:intergenic | 45.0% | |
| GGAGCATGCTAAAGTGGAAA+CGG | - | tig0009225:121866-121885 | Msa1346780:intron | 45.0% | |
| GAGCATGCTAAAGTGGAAAC+GGG | - | tig0009225:121867-121886 | Msa1346780:intron | 45.0% | |
| TACGAGCGACAATGTTGTTC+TGG | - | tig0009225:121899-121918 | Msa1346780:intron | 45.0% | |
| ACGAGCGACAATGTTGTTCT+GGG | - | tig0009225:121900-121919 | Msa1346780:intron | 45.0% | |
| CTCTAAACACTACAAGGGTG+TGG | - | tig0009225:122523-122542 | Msa1346780:intron | 45.0% | |
| AAACTCAATATGGCCCTGTC+TGG | + | tig0009225:122852-122871 | Msa1346780:intergenic | 45.0% | |
| TGACTGAAACACGCCTAACT+TGG | - | tig0009225:123154-123173 | Msa1346780:intron | 45.0% | |
| AAAAGTGGAGAATGCTGAGG+TGG | - | tig0009225:123369-123388 | Msa1346780:intron | 45.0% | |
| CTCACTATGCAATTCGGAAG+CGG | + | tig0009225:123524-123543 | Msa1346780:intergenic | 45.0% | |
| TGAAAATATGGGTAGGGGTG+GGG | + | tig0009225:123664-123683 | Msa1346780:intergenic | 45.0% | |
| GCTTTGTAGTGCTAGAGAGT+AGG | + | tig0009225:123785-123804 | Msa1346780:intergenic | 45.0% | |
| TCTCTAGCACTACAAAGCTG+TGG | - | tig0009225:123787-123806 | Msa1346780:intron | 45.0% | |
| GATTGAAGACCCAGAGAAAG+TGG | - | tig0009225:124005-124024 | Msa1346780:CDS | 45.0% | |
| TTGCTCGTATTAACCACCCT+TGG | + | tig0009225:124051-124070 | Msa1346780:intergenic | 45.0% | |
| ATGGTACTGTACTGTCTCCA+TGG | - | tig0009225:124134-124153 | Msa1346780:intron | 45.0% | |
| ACTGTCTCCATGGCTTACTT+TGG | - | tig0009225:124144-124163 | Msa1346780:intron | 45.0% | |
| CTGTCTCCATGGCTTACTTT+GGG | - | tig0009225:124145-124164 | Msa1346780:intron | 45.0% | |
| CCCCAAACATTATCTGATGG+AGG | + | tig0009225:124216-124235 | Msa1346780:intergenic | 45.0% | |
| TGGGGAACATGCTATAACTG+CGG | - | tig0009225:124231-124250 | Msa1346780:intron | 45.0% | |
| CCGTACAGTTGAAAGAAGCA+TGG | + | tig0009225:124266-124285 | Msa1346780:intergenic | 45.0% | |
| CTATAGCAACCATAGCGTTC+CGG | + | tig0009225:124686-124705 | Msa1346780:intergenic | 45.0% | |
| GAACGCTATGGTTGCTATAG+CGG | - | tig0009225:124686-124705 | Msa1346780:intron | 45.0% | |
| ! | GTGATGGAGATGCAACTAAG+CGG | - | tig0009225:124710-124729 | Msa1346780:intron | 45.0% |
| CCGTCCCTACAGAAGATAAA+AGG | + | tig0009225:124927-124946 | Msa1346780:intergenic | 45.0% | |
| TCTTTGGACAGTCGCTACTT+CGG | + | tig0009225:124979-124998 | Msa1346780:intergenic | 45.0% | |
| TGACAGTATGCTTGAGATGC+GGG | - | tig0009225:125029-125048 | Msa1346780:intron | 45.0% | |
| TGATGTGCTTTACTCCCAGT+AGG | + | tig0009225:125512-125531 | Msa1346780:intergenic | 45.0% | |
| AATTGGTGCAGGCATGTTCA+AGG | - | tig0009225:125612-125631 | Msa1346780:intron | 45.0% | |
| ATAGCATGAACTAGGTGTGG+TGG | + | tig0009225:125660-125679 | Msa1346780:intergenic | 45.0% | |
| TGAATGGCTCTCTCTTTCCA+AGG | - | tig0009225:125825-125844 | Msa1346780:intron | 45.0% | |
| GAATGGCTCTCTCTTTCCAA+GGG | - | tig0009225:125826-125845 | Msa1346780:intron | 45.0% | |
| ! | AATTTGGTTTCAGATGGGCG+TGG | - | tig0009225:126032-126051 | Msa1346780:intron | 45.0% |
| !!! | TGCCCTGTAGCTGTTTTTTC+TGG | - | tig0009225:126115-126134 | Msa1346780:CDS | 45.0% |
| GGACCAGAAAAAACAGCTAC+AGG | + | tig0009225:126121-126140 | Msa1346780:intergenic | 45.0% | |
| !!! | GTCCCTGTTAAAGGGTGTTT+TGG | - | tig0009225:126137-126156 | Msa1346780:CDS | 45.0% |
| !! | CTGTTACCAAAAGGTACCCA+GGG | + | tig0009225:126169-126188 | Msa1346780:intergenic | 45.0% |
| !! | TTTTGGGTGTGAGCCTTTAG+AGG | - | tig0009225:126190-126209 | Msa1346780:intron | 45.0% |
| CACCTTGCACAAGATGAACA+GGG | + | tig0009225:126239-126258 | Msa1346780:intergenic | 45.0% | |
| AATCAATGCAGGCAAGCTCA+AGG | - | tig0009225:126313-126332 | Msa1346780:intron | 45.0% | |
| TGAACTAGGTGTAGCTGGAT+CGG | + | tig0009225:126355-126374 | Msa1346780:intergenic | 45.0% | |
| TAGCATGAACTAGGTGTAGC+TGG | + | tig0009225:126360-126379 | Msa1346780:intergenic | 45.0% | |
| CCACACCTATAGCATGAACT+AGG | + | tig0009225:126369-126388 | Msa1346780:intergenic | 45.0% | |
| CCTAGTTCATGCTATAGGTG+TGG | - | tig0009225:126366-126385 | Msa1346780:intron | 45.0% | |
| TGCTATAGGTGTGGTGAAGA+AGG | - | tig0009225:126375-126394 | Msa1346780:intron | 45.0% | |
| !! | CCATTCTCTTTCTGGGATCT+TGG | + | tig0009225:126647-126666 | Msa1346780:intergenic | 45.0% |
| CCAAGATCCCAGAAAGAGAA+TGG | - | tig0009225:126644-126663 | Msa1346780:intron | 45.0% | |
| CCATGTGACCATTCTCTTTC+TGG | + | tig0009225:126655-126674 | Msa1346780:intergenic | 45.0% | |
| CCAGAAAGAGAATGGTCACA+TGG | - | tig0009225:126652-126671 | Msa1346780:intron | 45.0% | |
| GTACCCATGATGAAAAGTCC+TGG | + | tig0009225:126972-126991 | Msa1346780:intergenic | 45.0% | |
| ATCATGGGTACTCAGCTTCT+AGG | - | tig0009225:126981-127000 | Msa1346780:intron | 45.0% | |
| AGAGAAGTTACAACAACGGG+TGG | - | tig0009225:127032-127051 | Msa1346780:CDS | 45.0% | |
| GCTCAAGTCAAAGTCCCATT+TGG | + | tig0009225:127240-127259 | Msa1346780:intergenic | 45.0% | |
| !!! | AATTTATTTTATCTTTTTTA+TGG | - | tig0009225:121350-121369 | Msa1346780:CDS | 5.0% |
| !!! | AATATTTTTTAAAAATAGTT+TGG | + | tig0009225:125924-125943 | Msa1346780:intergenic | 5.0% |
| !! | AAATAATAAATAAATTAATG+AGG | - | tig0009225:126287-126306 | Msa1346780:intron | 5.0% |
| AGAAGAGGAGCTCGAAGAAG+AGG | - | tig0009225:120759-120778 | Msa1346780:three_prime_UTR | 50.0% | |
| TGCTAAAGTGGAAACGGGCA+TGG | - | tig0009225:121872-121891 | Msa1346780:intron | 50.0% | |
| GAGAATGCTGAGGTGGAAAC+AGG | - | tig0009225:123376-123395 | Msa1346780:intron | 50.0% | |
| ! | TACGAGCGACAGTGTTGTTC+TGG | - | tig0009225:123408-123427 | Msa1346780:intron | 50.0% |
| ! | ACGAGCGACAGTGTTGTTCT+GGG | - | tig0009225:123409-123428 | Msa1346780:intron | 50.0% |
| GGAAGCGGTGTTTCCTATCA+AGG | + | tig0009225:123509-123528 | Msa1346780:intergenic | 50.0% | |
| CGCTTCCGAATTGCATAGTG+AGG | - | tig0009225:123522-123541 | Msa1346780:intron | 50.0% | |
| GAAAATATGGGTAGGGGTGG+GGG | + | tig0009225:123663-123682 | Msa1346780:intergenic | 50.0% | |
| CACCAGGTACCACTTTCTCT+GGG | + | tig0009225:124017-124036 | Msa1346780:intergenic | 50.0% | |
| TCACCAGGTACCACTTTCTC+TGG | + | tig0009225:124018-124037 | Msa1346780:intergenic | 50.0% | |
| TGGTGAAGCAGCAGAACCAA+GGG | - | tig0009225:124032-124051 | Msa1346780:intron | 50.0% | |
| AACTCACAAGCAGCTTACGG+AGG | + | tig0009225:124083-124102 | Msa1346780:intergenic | 50.0% | |
| TGCTATAACTGCGGCGAAGA+AGG | - | tig0009225:124240-124259 | Msa1346780:intron | 50.0% | |
| CAAGGTCTGTTTGACTGCGT+TGG | - | tig0009225:124495-124514 | Msa1346780:intron | 50.0% | |
| GTGGCTAGGTGATACTGCTT+AGG | - | tig0009225:124517-124536 | Msa1346780:intron | 50.0% | |
| CTAGGTGATACTGCTTAGGC+TGG | - | tig0009225:124521-124540 | Msa1346780:intron | 50.0% | |
| ! | GACTGTCCAAAGAAGCACAC+AGG | - | tig0009225:124986-125005 | Msa1346780:intron | 50.0% |
| ! | TGTCCAAAGAAGCACACAGG+TGG | - | tig0009225:124989-125008 | Msa1346780:intron | 50.0% |
| TGCTTGAGATGCGGGAATTC+TGG | - | tig0009225:125037-125056 | Msa1346780:intron | 50.0% | |
| GCTTGAGATGCGGGAATTCT+GGG | - | tig0009225:125038-125057 | Msa1346780:intron | 50.0% | |
| ATTTAGGGGAGAGTTTGCCG+AGG | - | tig0009225:125990-126009 | Msa1346780:intron | 50.0% | |
| TTTAGGGGAGAGTTTGCCGA+GGG | - | tig0009225:125991-126010 | Msa1346780:intron | 50.0% | |
| !! | CCTGTTACCAAAAGGTACCC+AGG | + | tig0009225:126170-126189 | Msa1346780:intergenic | 50.0% |
| !! | CCTGGGTACCTTTTGGTAAC+AGG | - | tig0009225:126167-126186 | Msa1346780:intron | 50.0% |
| GTCCCTGTTCATCTTGTGCA+AGG | - | tig0009225:126234-126253 | Msa1346780:intron | 50.0% | |
| GCACCTTGCACAAGATGAAC+AGG | + | tig0009225:126240-126259 | Msa1346780:intergenic | 50.0% | |
| ! | TGTAGCTGGATCGGTGTTCT+CGG | + | tig0009225:126346-126365 | Msa1346780:intergenic | 50.0% |
| TGTTTCCTGTTGCCTACCTG+AGG | + | tig0009225:126602-126621 | Msa1346780:intergenic | 50.0% | |
| GGGTACTCAGCTTCTAGGTT+TGG | - | tig0009225:126986-127005 | Msa1346780:intron | 50.0% | |
| TCCACAAAACGGCGCCGTAT+TGG | - | tig0009225:120894-120913 | Msa1346780:three_prime_UTR | 55.0% | |
| !! | TCCAATACGGCGCCGTTTTG+TGG | + | tig0009225:120898-120917 | Msa1346780:intergenic | 55.0% |
| CGCTTCCGAATCACATAGCG+AGG | - | tig0009225:122013-122032 | Msa1346780:intron | 55.0% | |
| TGCTGAGGTGGAAACAGGCA+TGG | - | tig0009225:123381-123400 | Msa1346780:intron | 55.0% | |
| GACCCAGAGAAAGTGGTACC+TGG | - | tig0009225:124012-124031 | Msa1346780:intron | 55.0% | |
| !! | CTTGGTTCTGCTGCTTCACC+AGG | + | tig0009225:124033-124052 | Msa1346780:intergenic | 55.0% |
| CTGGTGAAGCAGCAGAACCA+AGG | - | tig0009225:124031-124050 | Msa1346780:intron | 55.0% | |
| TGAAGCAGCAGAACCAAGGG+TGG | - | tig0009225:124035-124054 | Msa1346780:intron | 55.0% | |
| TCTATCATCAGCGTGGTCCC+AGG | - | tig0009225:124181-124200 | Msa1346780:intron | 55.0% | |
| ! | TAATCCGCGGGCTGAGTCTA+TGG | - | tig0009225:124470-124489 | Msa1346780:intron | 55.0% |
| TGTACCATAGACTCAGCCCG+CGG | + | tig0009225:124477-124496 | Msa1346780:intergenic | 55.0% | |
| CGGGCTGAGTCTATGGTACA+AGG | - | tig0009225:124477-124496 | Msa1346780:intron | 55.0% | |
| GGTCTGTTTGACTGCGTTGG+TGG | - | tig0009225:124498-124517 | Msa1346780:intron | 55.0% | |
| !! | GTTTGACTGCGTTGGTGGCT+AGG | - | tig0009225:124503-124522 | Msa1346780:intron | 55.0% |
| TGGTTGCTATAGCGGCGTGA+TGG | - | tig0009225:124694-124713 | Msa1346780:intron | 55.0% | |
| TGCTCTACCTGCAAGCTAGC+TGG | - | tig0009225:124950-124969 | Msa1346780:intron | 55.0% | |
| GAGCCACCTGTGTGCTTCTT+TGG | + | tig0009225:124995-125014 | Msa1346780:intergenic | 55.0% | |
| !!! | GGTGTTTTGGTTACGGCCCT+GGG | - | tig0009225:126150-126169 | Msa1346780:CDS | 55.0% |
| ! | TTACGGCCCTGGGTACCTTT+TGG | - | tig0009225:126160-126179 | Msa1346780:intron | 55.0% |
| CAATGCAGGCAAGCTCAAGG+TGG | - | tig0009225:126316-126335 | Msa1346780:intron | 55.0% | |
| ! | GTAGCTGGATCGGTGTTCTC+GGG | + | tig0009225:126345-126364 | Msa1346780:intergenic | 55.0% |
| TTCCTGTTGCCTACCTGAGG+AGG | + | tig0009225:126599-126618 | Msa1346780:intergenic | 55.0% | |
| ! | TCGGTGACCAGCTAGCTTGC+AGG | + | tig0009225:124960-124979 | Msa1346780:intergenic | 60.0% |
| ACTAGGTGTGGTGGCAGCAG+TGG | + | tig0009225:125651-125670 | Msa1346780:intergenic | 60.0% | |
| !!! | GGGTGTTTTGGTTACGGCCC+TGG | - | tig0009225:126149-126168 | Msa1346780:CDS | 60.0% |
| ! | GGTTGGACGGCAGAGCATTC+TGG | - | tig0009225:126779-126798 | Msa1346780:intron | 60.0% |
| TGTGCTGCGTTCGCCTCCTC+AGG | - | tig0009225:126583-126602 | Msa1346780:intron | 65.0% | |
| CTGCGTTCGCCTCCTCAGGT+AGG | - | tig0009225:126587-126606 | Msa1346780:intron | 65.0% | |
| CGCCTCCTCAGGTAGGCAAC+AGG | - | tig0009225:126594-126613 | Msa1346780:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0009225 | gene | 120680 | 127299 | 120680 | ID=Msa1346780;Name=Msa1346780 |
| tig0009225 | mRNA | 120680 | 127299 | 120680 | ID=Msa1346780-mRNA-1;Parent=Msa1346780;Name=Msa1346780-mRNA-1;_AED=0.13;_eAED=0.13;_QI=38|0.9|1|1|1|1|11|242|611 |
| tig0009225 | exon | 120680 | 121374 | 120680 | ID=Msa1346780-mRNA-1:exon:5659;Parent=Msa1346780-mRNA-1 |
| tig0009225 | exon | 121548 | 121655 | 121548 | ID=Msa1346780-mRNA-1:exon:5658;Parent=Msa1346780-mRNA-1 |
| tig0009225 | exon | 122588 | 122704 | 122588 | ID=Msa1346780-mRNA-1:exon:5657;Parent=Msa1346780-mRNA-1 |
| tig0009225 | exon | 122871 | 123038 | 122871 | ID=Msa1346780-mRNA-1:exon:5656;Parent=Msa1346780-mRNA-1 |
| tig0009225 | exon | 123623 | 123787 | 123623 | ID=Msa1346780-mRNA-1:exon:5655;Parent=Msa1346780-mRNA-1 |
| tig0009225 | exon | 123884 | 124024 | 123884 | ID=Msa1346780-mRNA-1:exon:5654;Parent=Msa1346780-mRNA-1 |
| tig0009225 | exon | 124373 | 124464 | 124373 | ID=Msa1346780-mRNA-1:exon:5653;Parent=Msa1346780-mRNA-1 |
| tig0009225 | exon | 124549 | 124666 | 124549 | ID=Msa1346780-mRNA-1:exon:5652;Parent=Msa1346780-mRNA-1 |
| tig0009225 | exon | 125876 | 125973 | 125876 | ID=Msa1346780-mRNA-1:exon:5651;Parent=Msa1346780-mRNA-1 |
| tig0009225 | exon | 126058 | 126175 | 126058 | ID=Msa1346780-mRNA-1:exon:5650;Parent=Msa1346780-mRNA-1 |
| tig0009225 | exon | 127004 | 127299 | 127004 | ID=Msa1346780-mRNA-1:exon:5649;Parent=Msa1346780-mRNA-1 |
| tig0009225 | five_prime_UTR | 127262 | 127299 | 127262 | ID=Msa1346780-mRNA-1:five_prime_utr;Parent=Msa1346780-mRNA-1 |
| tig0009225 | CDS | 127004 | 127261 | 127004 | ID=Msa1346780-mRNA-1:cds;Parent=Msa1346780-mRNA-1 |
| tig0009225 | CDS | 126058 | 126175 | 126058 | ID=Msa1346780-mRNA-1:cds;Parent=Msa1346780-mRNA-1 |
| tig0009225 | CDS | 125876 | 125973 | 125876 | ID=Msa1346780-mRNA-1:cds;Parent=Msa1346780-mRNA-1 |
| tig0009225 | CDS | 124549 | 124666 | 124549 | ID=Msa1346780-mRNA-1:cds;Parent=Msa1346780-mRNA-1 |
| tig0009225 | CDS | 124373 | 124464 | 124373 | ID=Msa1346780-mRNA-1:cds;Parent=Msa1346780-mRNA-1 |
| tig0009225 | CDS | 123884 | 124024 | 123884 | ID=Msa1346780-mRNA-1:cds;Parent=Msa1346780-mRNA-1 |
| tig0009225 | CDS | 123623 | 123787 | 123623 | ID=Msa1346780-mRNA-1:cds;Parent=Msa1346780-mRNA-1 |
| tig0009225 | CDS | 122871 | 123038 | 122871 | ID=Msa1346780-mRNA-1:cds;Parent=Msa1346780-mRNA-1 |
| tig0009225 | CDS | 122588 | 122704 | 122588 | ID=Msa1346780-mRNA-1:cds;Parent=Msa1346780-mRNA-1 |
| tig0009225 | CDS | 121548 | 121655 | 121548 | ID=Msa1346780-mRNA-1:cds;Parent=Msa1346780-mRNA-1 |
| tig0009225 | CDS | 120922 | 121374 | 120922 | ID=Msa1346780-mRNA-1:cds;Parent=Msa1346780-mRNA-1 |
| tig0009225 | three_prime_UTR | 120680 | 120921 | 120680 | ID=Msa1346780-mRNA-1:three_prime_utr;Parent=Msa1346780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
