Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347060 | XP_003624937.2 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.75e-61 | 190 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347060 | sp|Q58FS3|RAD_ANTMA | 69.149 | 94 | 26 | 2 | 1 | 92 | 1 | 93 | 1.24e-40 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347060 | A2Q4K0 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 3.70e-61 | 190 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1347060 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0748270 | Msa1347060 | 0.998947 | 4.662887e-283 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347060 | MtrunA17_Chr7g0255841 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.13e-65 | 190 |
| Msa1347060 | MtrunA17_Chr3g0081631 | 72.222 | 90 | 24 | 1 | 4 | 92 | 2 | 91 | 1.26e-44 | 139 |
| Msa1347060 | MtrunA17_Chr6g0449111 | 72.059 | 68 | 19 | 0 | 7 | 74 | 5 | 72 | 6.26e-35 | 114 |
| Msa1347060 | MtrunA17_Chr3g0144631 | 68.354 | 79 | 21 | 1 | 1 | 75 | 1 | 79 | 5.32e-34 | 112 |
| Msa1347060 | MtrunA17_Chr1g0155181 | 59.302 | 86 | 29 | 1 | 6 | 85 | 1 | 86 | 6.14e-33 | 109 |
| Msa1347060 | MtrunA17_Chr3g0141601 | 57.143 | 91 | 35 | 2 | 6 | 92 | 1 | 91 | 3.14e-32 | 107 |
| Msa1347060 | MtrunA17_Chr5g0404101 | 63.014 | 73 | 27 | 0 | 4 | 76 | 11 | 83 | 1.24e-30 | 103 |
| Msa1347060 | MtrunA17_Chr8g0373131 | 56.716 | 67 | 28 | 1 | 9 | 75 | 2 | 67 | 7.81e-25 | 88.6 |
| Msa1347060 | MtrunA17_Chr8g0373111 | 56.716 | 67 | 28 | 1 | 9 | 75 | 2 | 67 | 8.21e-25 | 88.6 |
| Msa1347060 | MtrunA17_Chr8g0373121 | 56.716 | 67 | 28 | 1 | 9 | 75 | 2 | 67 | 8.21e-25 | 88.6 |
| Msa1347060 | MtrunA17_Chr3g0141641 | 45.055 | 91 | 41 | 2 | 11 | 92 | 2 | 92 | 3.32e-24 | 87.4 |
| Msa1347060 | MtrunA17_Chr5g0404301 | 60.317 | 63 | 24 | 1 | 10 | 72 | 2 | 63 | 9.33e-24 | 85.5 |
| Msa1347060 | MtrunA17_Chr8g0373101 | 56.452 | 62 | 26 | 1 | 11 | 72 | 4 | 64 | 6.78e-23 | 83.6 |
| Msa1347060 | MtrunA17_Chr5g0436501 | 54.930 | 71 | 32 | 0 | 12 | 82 | 27 | 97 | 1.30e-20 | 82.8 |
| Msa1347060 | MtrunA17_Chr8g0364741 | 50.667 | 75 | 37 | 0 | 6 | 80 | 4 | 78 | 2.62e-20 | 78.6 |
| Msa1347060 | MtrunA17_Chr1g0162081 | 50.000 | 78 | 39 | 0 | 1 | 78 | 1 | 78 | 1.38e-19 | 80.5 |
| Msa1347060 | MtrunA17_Chr8g0365011 | 54.167 | 72 | 33 | 0 | 9 | 80 | 5 | 76 | 2.84e-19 | 79.3 |
| Msa1347060 | MtrunA17_Chr3g0104071 | 50.685 | 73 | 36 | 0 | 2 | 74 | 33 | 105 | 9.65e-19 | 78.2 |
| Msa1347060 | MtrunA17_Chr5g0429521 | 47.826 | 69 | 36 | 0 | 11 | 79 | 28 | 96 | 5.02e-18 | 76.3 |
| Msa1347060 | MtrunA17_Chr7g0241761 | 52.174 | 69 | 33 | 0 | 12 | 80 | 35 | 103 | 5.19e-18 | 76.3 |
| Msa1347060 | MtrunA17_Chr1g0194071 | 57.627 | 59 | 24 | 1 | 11 | 68 | 10 | 68 | 6.75e-16 | 66.6 |
| Msa1347060 | MtrunA17_Chr1g0210471 | 47.619 | 63 | 33 | 0 | 12 | 74 | 24 | 86 | 7.82e-15 | 67.0 |
| Msa1347060 | MtrunA17_Chr7g0270711 | 55.000 | 60 | 26 | 1 | 11 | 69 | 10 | 69 | 3.19e-14 | 62.0 |
| Msa1347060 | MtrunA17_Chr4g0062741 | 45.205 | 73 | 36 | 2 | 6 | 74 | 1 | 73 | 4.56e-14 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347060 | AT2G21650.1 | 64.773 | 88 | 24 | 1 | 12 | 92 | 14 | 101 | 4.16e-38 | 123 |
| Msa1347060 | AT4G39250.1 | 64.368 | 87 | 25 | 1 | 12 | 92 | 14 | 100 | 1.32e-37 | 122 |
| Msa1347060 | AT1G75250.2 | 55.670 | 97 | 37 | 1 | 1 | 91 | 1 | 97 | 5.60e-36 | 117 |
| Msa1347060 | AT1G75250.1 | 69.333 | 75 | 23 | 0 | 1 | 75 | 1 | 75 | 1.47e-35 | 117 |
| Msa1347060 | AT1G19510.1 | 59.783 | 92 | 37 | 0 | 1 | 92 | 1 | 92 | 2.64e-29 | 100 |
| Msa1347060 | AT2G18328.1 | 62.295 | 61 | 23 | 0 | 15 | 75 | 14 | 74 | 1.84e-24 | 88.2 |
| Msa1347060 | AT5G05790.2 | 52.857 | 70 | 33 | 0 | 9 | 78 | 28 | 97 | 3.54e-20 | 82.0 |
| Msa1347060 | AT5G05790.1 | 52.857 | 70 | 33 | 0 | 9 | 78 | 28 | 97 | 3.54e-20 | 82.0 |
| Msa1347060 | AT4G36570.1 | 75.000 | 44 | 11 | 0 | 12 | 55 | 12 | 55 | 4.92e-20 | 76.3 |
| Msa1347060 | AT3G11280.2 | 52.239 | 67 | 32 | 0 | 12 | 78 | 33 | 99 | 1.03e-18 | 77.8 |
| Msa1347060 | AT3G11280.1 | 52.239 | 67 | 32 | 0 | 12 | 78 | 33 | 99 | 1.03e-18 | 77.8 |
| Msa1347060 | AT2G38090.1 | 52.174 | 69 | 33 | 0 | 12 | 80 | 29 | 97 | 2.27e-18 | 77.4 |
| Msa1347060 | AT5G58900.1 | 50.000 | 74 | 34 | 1 | 4 | 74 | 23 | 96 | 3.03e-17 | 74.3 |
| Msa1347060 | AT5G08520.1 | 52.381 | 63 | 30 | 0 | 12 | 74 | 12 | 74 | 5.44e-16 | 70.9 |
| Msa1347060 | AT1G49010.1 | 46.479 | 71 | 35 | 1 | 7 | 74 | 3 | 73 | 1.43e-14 | 67.4 |
| Msa1347060 | AT5G23650.1 | 46.377 | 69 | 37 | 0 | 6 | 74 | 7 | 75 | 2.01e-14 | 67.0 |
| Msa1347060 | AT5G04760.1 | 41.791 | 67 | 38 | 1 | 8 | 74 | 2 | 67 | 4.55e-13 | 62.4 |
| Msa1347060 | AT5G01200.1 | 42.424 | 66 | 37 | 1 | 10 | 74 | 28 | 93 | 2.05e-11 | 58.2 |
Find 33 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCTAGTATCCTAATTAA+TGG | 0.186484 | tig0009457:+13657 | Msa1347060:three_prime_UTR |
| AACAATTAATAAGCTAGTTT+TGG | 0.255773 | tig0009457:-13107 | Msa1347060:intergenic |
| ACCCCTCAATACCATTAATT+AGG | 0.339309 | tig0009457:-13668 | Msa1347060:intergenic |
| TACTTTCTTGTTGTTGAAGC+AGG | 0.354538 | tig0009457:+13798 | Msa1347060:three_prime_UTR |
| TCTAGTTCAATGTCAGCTTC+TGG | 0.381239 | tig0009457:+13163 | Msa1347060:CDS |
| GATATTAAACATATTGAGTC+AGG | 0.394581 | tig0009457:+13334 | Msa1347060:CDS |
| TTGTTGTTGATTGCACTTGT+TGG | 0.397526 | tig0009457:-13620 | Msa1347060:intergenic |
| TAATGTTTCTTAACTTCCTC+AGG | 0.405406 | tig0009457:-13295 | Msa1347060:intergenic |
| GCCATTTCTTAATTAATTCA+AGG | 0.418850 | tig0009457:-13139 | Msa1347060:intergenic |
| ACCTTGAATTAATTAAGAAA+TGG | 0.425549 | tig0009457:+13138 | Msa1347060:exon |
| ATCCTAATTAATGGTATTGA+GGG | 0.440615 | tig0009457:+13666 | Msa1347060:three_prime_UTR |
| CAGTGTCTCATGAGGAGAAA+AGG | 0.467404 | tig0009457:+13389 | Msa1347060:CDS |
| TATCCTAATTAATGGTATTG+AGG | 0.477146 | tig0009457:+13665 | Msa1347060:three_prime_UTR |
| CAATGTCAGCTTCTGGCTCA+TGG | 0.480309 | tig0009457:+13170 | Msa1347060:CDS |
| TTCTGGCTCATGGAGTGTTA+AGG | 0.488975 | tig0009457:+13180 | Msa1347060:CDS |
| TTGCACTTGTTGGTCAATGA+AGG | 0.513934 | tig0009457:-13610 | Msa1347060:intergenic |
| GCTACATTGTACCAACGATC+TGG | 0.520197 | tig0009457:-13250 | Msa1347060:intergenic |
| TAATTAATTCAAGGTATGAA+AGG | 0.527947 | tig0009457:-13130 | Msa1347060:intergenic |
| CACTTATGAAGAGTGGTAAG+TGG | 0.542822 | tig0009457:-13075 | Msa1347060:intergenic |
| CTTCAACAACAAGAAAGTAA+AGG | 0.546066 | tig0009457:-13794 | Msa1347060:intergenic |
| AACAGCTAAAGCTCTTTCAA+AGG | 0.549456 | tig0009457:-13212 | Msa1347060:intergenic |
| ACATTATGAACTTCTTGTTG+AGG | 0.570098 | tig0009457:+13312 | Msa1347060:CDS |
| AACAACAAGAAAGTAAAGGA+TGG | 0.573425 | tig0009457:-13790 | Msa1347060:intergenic |
| GAAAATTTCAGTGTCTCATG+AGG | 0.590467 | tig0009457:+13381 | Msa1347060:CDS |
| TACAATGTAGCTCATGCTGT+TGG | 0.593737 | tig0009457:+13262 | Msa1347060:CDS |
| TGAGAATCACTTATGAAGAG+TGG | 0.595892 | tig0009457:-13082 | Msa1347060:intergenic |
| AATGTAGCTCATGCTGTTGG+TGG | 0.602491 | tig0009457:+13265 | Msa1347060:CDS |
| ACAAAGACACTCCAGATCGT+TGG | 0.612332 | tig0009457:+13239 | Msa1347060:CDS |
| CAACTTTATTAAGAACGAGG+AGG | 0.657197 | tig0009457:-13845 | Msa1347060:intergenic |
| ATATTAAACATATTGAGTCA+GGG | 0.667795 | tig0009457:+13335 | Msa1347060:CDS |
| TCCTAATTAATGGTATTGAG+GGG | 0.676186 | tig0009457:+13667 | Msa1347060:three_prime_UTR |
| TTACAACTTTATTAAGAACG+AGG | 0.684701 | tig0009457:-13848 | Msa1347060:intergenic |
| TGTTGGTGGCAAAACTCCTG+AGG | 0.702099 | tig0009457:+13279 | Msa1347060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATTAATAAGCTAGTTT+TGG | - | tig0009457:13110-13129 | None:intergenic | 20.0% |
| !! | TAATTAATTCAAGGTATGAA+AGG | - | tig0009457:13133-13152 | None:intergenic | 20.0% |
| !! | ACCTTGAATTAATTAAGAAA+TGG | + | tig0009457:13138-13157 | Msa1347060:exon | 20.0% |
| !! | ATATTAAACATATTGAGTCA+GGG | + | tig0009457:13335-13354 | Msa1347060:CDS | 20.0% |
| !!! | ATTTTCTTGTAATTTGGAAA+TGG | - | tig0009457:13367-13386 | Msa1347060:intergenic | 20.0% |
| !!! | ACTGAAATTTTCTTGTAATT+TGG | - | tig0009457:13373-13392 | Msa1347060:intergenic | 20.0% |
| !! | TTTAATTATTTAACAAGCGT+AGG | - | tig0009457:13460-13479 | Msa1347060:intergenic | 20.0% |
| !!! | TACTCTTTACTTTCTTTTAT+AGG | + | tig0009457:13573-13592 | Msa1347060:intron | 20.0% |
| !! | TATTCTAGTATCCTAATTAA+TGG | + | tig0009457:13657-13676 | Msa1347060:three_prime_UTR | 20.0% |
| !!! | ATTTTATCCAAAAAGAGTAA+AGG | - | tig0009457:13769-13788 | Msa1347060:intergenic | 20.0% |
| !!! | AACAATTAATAAGCTAGTTT+TGG | - | tig0009457:13110-13129 | Msa1347060:intergenic | 20.0% |
| !! | TAATTAATTCAAGGTATGAA+AGG | - | tig0009457:13133-13152 | Msa1347060:intergenic | 20.0% |
| !! | ACCTTGAATTAATTAAGAAA+TGG | + | tig0009457:13138-13157 | Msa1347060:exon | 20.0% |
| !! | ATATTAAACATATTGAGTCA+GGG | + | tig0009457:13335-13354 | Msa1347060:CDS | 20.0% |
| !!! | ATTTTCTTGTAATTTGGAAA+TGG | - | tig0009457:13367-13386 | Msa1347060:intergenic | 20.0% |
| !!! | ACTGAAATTTTCTTGTAATT+TGG | - | tig0009457:13373-13392 | Msa1347060:intergenic | 20.0% |
| !! | TTTAATTATTTAACAAGCGT+AGG | - | tig0009457:13460-13479 | Msa1347060:intergenic | 20.0% |
| !!! | TACTCTTTACTTTCTTTTAT+AGG | + | tig0009457:13573-13592 | Msa1347060:intron | 20.0% |
| !! | TATTCTAGTATCCTAATTAA+TGG | + | tig0009457:13657-13676 | Msa1347060:three_prime_UTR | 20.0% |
| !!! | ATTTTATCCAAAAAGAGTAA+AGG | - | tig0009457:13769-13788 | Msa1347060:intergenic | 20.0% |
| ! | GCCATTTCTTAATTAATTCA+AGG | - | tig0009457:13142-13161 | Msa1347060:intergenic | 25.0% |
| ! | GATATTAAACATATTGAGTC+AGG | + | tig0009457:13334-13353 | Msa1347060:CDS | 25.0% |
| !! | TTACTTTCTTTTATAGGATG+AGG | + | tig0009457:13579-13598 | Msa1347060:intron | 25.0% |
| ! | TATCCTAATTAATGGTATTG+AGG | + | tig0009457:13665-13684 | Msa1347060:three_prime_UTR | 25.0% |
| !! | ATCCTAATTAATGGTATTGA+GGG | + | tig0009457:13666-13685 | Msa1347060:three_prime_UTR | 25.0% |
| !! | ATTCTATCCTTTACTCTTTT+TGG | + | tig0009457:13759-13778 | Msa1347060:three_prime_UTR | 25.0% |
| ! | TTACAACTTTATTAAGAACG+AGG | - | tig0009457:13851-13870 | Msa1347060:intergenic | 25.0% |
| ! | GCCATTTCTTAATTAATTCA+AGG | - | tig0009457:13142-13161 | Msa1347060:intergenic | 25.0% |
| ! | GATATTAAACATATTGAGTC+AGG | + | tig0009457:13334-13353 | Msa1347060:CDS | 25.0% |
| !! | TTACTTTCTTTTATAGGATG+AGG | + | tig0009457:13579-13598 | Msa1347060:intron | 25.0% |
| ! | TATCCTAATTAATGGTATTG+AGG | + | tig0009457:13665-13684 | Msa1347060:three_prime_UTR | 25.0% |
| !! | ATCCTAATTAATGGTATTGA+GGG | + | tig0009457:13666-13685 | Msa1347060:three_prime_UTR | 25.0% |
| !! | ATTCTATCCTTTACTCTTTT+TGG | + | tig0009457:13759-13778 | Msa1347060:three_prime_UTR | 25.0% |
| ! | TTACAACTTTATTAAGAACG+AGG | - | tig0009457:13851-13870 | Msa1347060:intergenic | 25.0% |
| TAATGTTTCTTAACTTCCTC+AGG | - | tig0009457:13298-13317 | Msa1347060:intergenic | 30.0% | |
| ACATTATGAACTTCTTGTTG+AGG | + | tig0009457:13312-13331 | Msa1347060:CDS | 30.0% | |
| ! | TCCTAATTAATGGTATTGAG+GGG | + | tig0009457:13667-13686 | Msa1347060:three_prime_UTR | 30.0% |
| AACAACAAGAAAGTAAAGGA+TGG | - | tig0009457:13793-13812 | Msa1347060:intergenic | 30.0% | |
| CTTCAACAACAAGAAAGTAA+AGG | - | tig0009457:13797-13816 | Msa1347060:intergenic | 30.0% | |
| TAATGTTTCTTAACTTCCTC+AGG | - | tig0009457:13298-13317 | Msa1347060:intergenic | 30.0% | |
| ACATTATGAACTTCTTGTTG+AGG | + | tig0009457:13312-13331 | Msa1347060:CDS | 30.0% | |
| ! | TCCTAATTAATGGTATTGAG+GGG | + | tig0009457:13667-13686 | Msa1347060:three_prime_UTR | 30.0% |
| AACAACAAGAAAGTAAAGGA+TGG | - | tig0009457:13793-13812 | Msa1347060:intergenic | 30.0% | |
| CTTCAACAACAAGAAAGTAA+AGG | - | tig0009457:13797-13816 | Msa1347060:intergenic | 30.0% | |
| TGAGAATCACTTATGAAGAG+TGG | - | tig0009457:13085-13104 | None:intergenic | 35.0% | |
| AACAGCTAAAGCTCTTTCAA+AGG | - | tig0009457:13215-13234 | Msa1347060:intergenic | 35.0% | |
| GAAAATTTCAGTGTCTCATG+AGG | + | tig0009457:13381-13400 | Msa1347060:CDS | 35.0% | |
| ! | TTGTTGTTGATTGCACTTGT+TGG | - | tig0009457:13623-13642 | Msa1347060:intergenic | 35.0% |
| ACCCCTCAATACCATTAATT+AGG | - | tig0009457:13671-13690 | Msa1347060:intergenic | 35.0% | |
| !! | TACTTTCTTGTTGTTGAAGC+AGG | + | tig0009457:13798-13817 | Msa1347060:three_prime_UTR | 35.0% |
| CAACTTTATTAAGAACGAGG+AGG | - | tig0009457:13848-13867 | Msa1347060:intergenic | 35.0% | |
| TGAGAATCACTTATGAAGAG+TGG | - | tig0009457:13085-13104 | Msa1347060:intergenic | 35.0% | |
| AACAGCTAAAGCTCTTTCAA+AGG | - | tig0009457:13215-13234 | Msa1347060:intergenic | 35.0% | |
| GAAAATTTCAGTGTCTCATG+AGG | + | tig0009457:13381-13400 | Msa1347060:CDS | 35.0% | |
| ! | TTGTTGTTGATTGCACTTGT+TGG | - | tig0009457:13623-13642 | Msa1347060:intergenic | 35.0% |
| ACCCCTCAATACCATTAATT+AGG | - | tig0009457:13671-13690 | Msa1347060:intergenic | 35.0% | |
| !! | TACTTTCTTGTTGTTGAAGC+AGG | + | tig0009457:13798-13817 | Msa1347060:three_prime_UTR | 35.0% |
| CAACTTTATTAAGAACGAGG+AGG | - | tig0009457:13848-13867 | Msa1347060:intergenic | 35.0% | |
| CACTTATGAAGAGTGGTAAG+TGG | - | tig0009457:13078-13097 | None:intergenic | 40.0% | |
| ! | TCTAGTTCAATGTCAGCTTC+TGG | + | tig0009457:13163-13182 | Msa1347060:CDS | 40.0% |
| TACAATGTAGCTCATGCTGT+TGG | + | tig0009457:13262-13281 | Msa1347060:CDS | 40.0% | |
| ! | TTGCACTTGTTGGTCAATGA+AGG | - | tig0009457:13613-13632 | Msa1347060:intergenic | 40.0% |
| CACTTATGAAGAGTGGTAAG+TGG | - | tig0009457:13078-13097 | Msa1347060:intergenic | 40.0% | |
| ! | TCTAGTTCAATGTCAGCTTC+TGG | + | tig0009457:13163-13182 | Msa1347060:CDS | 40.0% |
| TACAATGTAGCTCATGCTGT+TGG | + | tig0009457:13262-13281 | Msa1347060:CDS | 40.0% | |
| ! | TTGCACTTGTTGGTCAATGA+AGG | - | tig0009457:13613-13632 | Msa1347060:intergenic | 40.0% |
| !! | TTCTGGCTCATGGAGTGTTA+AGG | + | tig0009457:13180-13199 | Msa1347060:CDS | 45.0% |
| ACAAAGACACTCCAGATCGT+TGG | + | tig0009457:13239-13258 | Msa1347060:CDS | 45.0% | |
| GCTACATTGTACCAACGATC+TGG | - | tig0009457:13253-13272 | Msa1347060:intergenic | 45.0% | |
| AATGTAGCTCATGCTGTTGG+TGG | + | tig0009457:13265-13284 | Msa1347060:CDS | 45.0% | |
| CAGTGTCTCATGAGGAGAAA+AGG | + | tig0009457:13389-13408 | Msa1347060:CDS | 45.0% | |
| ATGAAGAGTGGTAAGTGGAG+AGG | - | tig0009457:13073-13092 | Msa1347060:intergenic | 45.0% | |
| !! | TTCTGGCTCATGGAGTGTTA+AGG | + | tig0009457:13180-13199 | Msa1347060:CDS | 45.0% |
| ACAAAGACACTCCAGATCGT+TGG | + | tig0009457:13239-13258 | Msa1347060:CDS | 45.0% | |
| GCTACATTGTACCAACGATC+TGG | - | tig0009457:13253-13272 | Msa1347060:intergenic | 45.0% | |
| AATGTAGCTCATGCTGTTGG+TGG | + | tig0009457:13265-13284 | Msa1347060:CDS | 45.0% | |
| CAGTGTCTCATGAGGAGAAA+AGG | + | tig0009457:13389-13408 | Msa1347060:CDS | 45.0% | |
| !! | CAATGTCAGCTTCTGGCTCA+TGG | + | tig0009457:13170-13189 | Msa1347060:CDS | 50.0% |
| !! | TGTTGGTGGCAAAACTCCTG+AGG | + | tig0009457:13279-13298 | Msa1347060:CDS | 50.0% |
| !! | CAATGTCAGCTTCTGGCTCA+TGG | + | tig0009457:13170-13189 | Msa1347060:CDS | 50.0% |
| !! | TGTTGGTGGCAAAACTCCTG+AGG | + | tig0009457:13279-13298 | Msa1347060:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0009457 | gene | 13072 | 13972 | 13072 | ID=Msa1347060;Name=Msa1347060 |
| tig0009457 | mRNA | 13072 | 13972 | 13072 | ID=Msa1347060-mRNA-1;Parent=Msa1347060;Name=Msa1347060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=85|1|1|1|1|1|2|353|92 |
| tig0009457 | exon | 13072 | 13410 | 13072 | ID=Msa1347060-mRNA-1:exon:5781;Parent=Msa1347060-mRNA-1 |
| tig0009457 | exon | 13595 | 13972 | 13595 | ID=Msa1347060-mRNA-1:exon:5782;Parent=Msa1347060-mRNA-1 |
| tig0009457 | five_prime_UTR | 13072 | 13156 | 13072 | ID=Msa1347060-mRNA-1:five_prime_utr;Parent=Msa1347060-mRNA-1 |
| tig0009457 | CDS | 13157 | 13410 | 13157 | ID=Msa1347060-mRNA-1:cds;Parent=Msa1347060-mRNA-1 |
| tig0009457 | CDS | 13595 | 13619 | 13595 | ID=Msa1347060-mRNA-1:cds;Parent=Msa1347060-mRNA-1 |
| tig0009457 | three_prime_UTR | 13620 | 13972 | 13620 | ID=Msa1347060-mRNA-1:three_prime_utr;Parent=Msa1347060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
