AlfalfaGEDB | Msa1347060

M. sativa cultivar zhongmu-4 / Msa1347060

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010114 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1347060	XP_003624937.2	100.000	92	0	0	1	92	1	92	7.75e-61	190

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1347060	sp\|Q58FS3\|RAD_ANTMA	69.149	94	26	2	1	92	1	93	1.24e-40	132

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1347060	A2Q4K0	100.000	92	0	0	1	92	1	92	3.70e-61	190

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TFs/TRs:

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Gene ID	Type	Classification
Msa1347060	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0748270	Msa1347060	0.998947	4.662887e-283	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1347060	MtrunA17_Chr7g0255841	100.000	92	0	0	1	92	1	92	7.13e-65	190
Msa1347060	MtrunA17_Chr3g0081631	72.222	90	24	1	4	92	2	91	1.26e-44	139
Msa1347060	MtrunA17_Chr6g0449111	72.059	68	19	0	7	74	5	72	6.26e-35	114
Msa1347060	MtrunA17_Chr3g0144631	68.354	79	21	1	1	75	1	79	5.32e-34	112
Msa1347060	MtrunA17_Chr1g0155181	59.302	86	29	1	6	85	1	86	6.14e-33	109
Msa1347060	MtrunA17_Chr3g0141601	57.143	91	35	2	6	92	1	91	3.14e-32	107
Msa1347060	MtrunA17_Chr5g0404101	63.014	73	27	0	4	76	11	83	1.24e-30	103
Msa1347060	MtrunA17_Chr8g0373131	56.716	67	28	1	9	75	2	67	7.81e-25	88.6
Msa1347060	MtrunA17_Chr8g0373111	56.716	67	28	1	9	75	2	67	8.21e-25	88.6
Msa1347060	MtrunA17_Chr8g0373121	56.716	67	28	1	9	75	2	67	8.21e-25	88.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1347060	AT2G21650.1	64.773	88	24	1	12	92	14	101	4.16e-38	123
Msa1347060	AT4G39250.1	64.368	87	25	1	12	92	14	100	1.32e-37	122
Msa1347060	AT1G75250.2	55.670	97	37	1	1	91	1	97	5.60e-36	117
Msa1347060	AT1G75250.1	69.333	75	23	0	1	75	1	75	1.47e-35	117
Msa1347060	AT1G19510.1	59.783	92	37	0	1	92	1	92	2.64e-29	100
Msa1347060	AT2G18328.1	62.295	61	23	0	15	75	14	74	1.84e-24	88.2
Msa1347060	AT5G05790.2	52.857	70	33	0	9	78	28	97	3.54e-20	82.0
Msa1347060	AT5G05790.1	52.857	70	33	0	9	78	28	97	3.54e-20	82.0
Msa1347060	AT4G36570.1	75.000	44	11	0	12	55	12	55	4.92e-20	76.3
Msa1347060	AT3G11280.2	52.239	67	32	0	12	78	33	99	1.03e-18	77.8

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Find 33 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACAAGAAAGTAAAGGA+TGG	0.573425	tig0009457:-13790	Msa1347060:intergenic
AACAATTAATAAGCTAGTTT+TGG	0.255773	tig0009457:-13107	Msa1347060:intergenic
AACAGCTAAAGCTCTTTCAA+AGG	0.549456	tig0009457:-13212	Msa1347060:intergenic
AATGTAGCTCATGCTGTTGG+TGG	0.602491	tig0009457:+13265	Msa1347060:CDS
ACAAAGACACTCCAGATCGT+TGG	0.612332	tig0009457:+13239	Msa1347060:CDS
ACATTATGAACTTCTTGTTG+AGG	0.570098	tig0009457:+13312	Msa1347060:CDS
ACCCCTCAATACCATTAATT+AGG	0.339309	tig0009457:-13668	Msa1347060:intergenic
ACCTTGAATTAATTAAGAAA+TGG	0.425549	tig0009457:+13138	Msa1347060:exon
ATATTAAACATATTGAGTCA+GGG	0.667795	tig0009457:+13335	Msa1347060:CDS
ATCCTAATTAATGGTATTGA+GGG	0.440615	tig0009457:+13666	Msa1347060:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATGTTTCTTAACTTCCTC+AGG	-	tig0009457:13298-13317	Msa1347060:intergenic	30.0%
ACATTATGAACTTCTTGTTG+AGG	+	tig0009457:13312-13331	Msa1347060:CDS	30.0%
AACAACAAGAAAGTAAAGGA+TGG	-	tig0009457:13793-13812	Msa1347060:intergenic	30.0%
CTTCAACAACAAGAAAGTAA+AGG	-	tig0009457:13797-13816	Msa1347060:intergenic	30.0%
TAATGTTTCTTAACTTCCTC+AGG	-	tig0009457:13298-13317	Msa1347060:intergenic	30.0%
ACATTATGAACTTCTTGTTG+AGG	+	tig0009457:13312-13331	Msa1347060:CDS	30.0%
AACAACAAGAAAGTAAAGGA+TGG	-	tig0009457:13793-13812	Msa1347060:intergenic	30.0%
CTTCAACAACAAGAAAGTAA+AGG	-	tig0009457:13797-13816	Msa1347060:intergenic	30.0%
TGAGAATCACTTATGAAGAG+TGG	-	tig0009457:13085-13104	None:intergenic	35.0%
AACAGCTAAAGCTCTTTCAA+AGG	-	tig0009457:13215-13234	Msa1347060:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0009457	gene	13072	13972	13072	ID=Msa1347060;Name=Msa1347060
tig0009457	mRNA	13072	13972	13072	ID=Msa1347060-mRNA-1;Parent=Msa1347060;Name=Msa1347060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=85\|1\|1\|1\|1\|1\|2\|353\|92
tig0009457	exon	13072	13410	13072	ID=Msa1347060-mRNA-1:exon:5781;Parent=Msa1347060-mRNA-1
tig0009457	exon	13595	13972	13595	ID=Msa1347060-mRNA-1:exon:5782;Parent=Msa1347060-mRNA-1
tig0009457	five_prime_UTR	13072	13156	13072	ID=Msa1347060-mRNA-1:five_prime_utr;Parent=Msa1347060-mRNA-1
tig0009457	CDS	13157	13410	13157	ID=Msa1347060-mRNA-1:cds;Parent=Msa1347060-mRNA-1
tig0009457	CDS	13595	13619	13595	ID=Msa1347060-mRNA-1:cds;Parent=Msa1347060-mRNA-1
tig0009457	three_prime_UTR	13620	13972	13620	ID=Msa1347060-mRNA-1:three_prime_utr;Parent=Msa1347060-mRNA-1

Gene Sequence	>Msa1347060 ATGGCATCTAGTTCAATGTCAGCTTCTGGCTCATGGAGTGTTAAGGAGAACAAAGCCTTTGAAAGAGCTTTAGCTGTTTATGACAAAGACACTCCAGATCGTTGGTACAATGTAGCTCATGCTGTTGGTGGCAAAACTCCTGAGGAAGTTAAGAAACATTATGAACTTCTTGTTGAGGATATTAAACATATTGAGTCAGGGAAAGTTCCATTTCCAAATTACAAGAAAATTTCAGTGTCTCATGAGGAGAAAAGGATGAGGAACATGAGCCTTCATTGA
Protein sequence	>Msa1347060 MASSSMSASGSWSVKENKAFERALAVYDKDTPDRWYNVAHAVGGKTPEEVKKHYELLVEDIKHIESGKVPFPNYKKISVSHEEKRMRNMSLH*