AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1347880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1347880 MtrunA17_Chr4g0010511 96.950 623 19 0 1 623 1 623 0.0 1244
Msa1347880 MtrunA17_Chr3g0087291 68.860 623 134 9 1 623 1 563 0.0 800
Msa1347880 MtrunA17_Chr4g0070551 36.771 446 258 9 186 616 181 617 1.76e-87 285
Msa1347880 MtrunA17_Chr5g0426591 36.261 444 237 10 202 616 85 511 5.47e-80 262
Msa1347880 MtrunA17_Chr3g0129981 36.508 441 243 11 199 616 85 511 1.15e-79 261
Msa1347880 MtrunA17_Chr5g0448581 35.307 456 275 10 172 619 59 502 2.66e-77 256
Msa1347880 MtrunA17_Chr4g0056061 38.974 390 218 9 236 616 111 489 1.90e-76 253
Msa1347880 MtrunA17_Chr5g0399311 37.644 433 242 9 202 622 95 511 4.45e-76 251
Msa1347880 MtrunA17_Chr3g0143821 34.591 477 264 10 177 619 33 495 5.12e-75 250
Msa1347880 MtrunA17_Chr4g0042711 36.409 401 236 8 236 622 100 495 5.98e-75 248
Msa1347880 MtrunA17_Chr3g0132371 36.285 463 242 13 184 616 99 538 7.64e-75 249
Msa1347880 MtrunA17_Chr4g0008451 33.945 436 268 8 196 620 199 625 1.26e-73 248
Msa1347880 MtrunA17_Chr5g0412251 34.725 455 246 10 201 616 59 501 2.42e-73 244
Msa1347880 MtrunA17_Chr4g0043911 34.009 444 257 10 201 622 124 553 1.61e-71 241
Msa1347880 MtrunA17_Chr1g0160781 33.761 468 269 12 175 617 96 547 1.65e-71 240
Msa1347880 MtrunA17_Chr4g0061781 37.903 372 219 6 236 598 119 487 1.98e-71 239
Msa1347880 MtrunA17_Chr5g0436321 36.364 396 236 8 232 616 160 550 3.57e-71 240
Msa1347880 MtrunA17_Chr6g0455571 37.600 375 218 8 236 599 118 487 4.01e-71 238
Msa1347880 MtrunA17_Chr5g0417871 35.802 405 235 9 236 623 88 484 1.05e-70 236
Msa1347880 MtrunA17_Chr3g0132951 33.698 457 250 10 200 616 72 515 3.06e-70 236
Msa1347880 MtrunA17_Chr2g0307971 36.957 368 218 6 236 593 118 481 1.01e-69 235
Msa1347880 MtrunA17_Chr1g0204121 32.379 454 275 10 176 619 46 477 1.76e-69 234
Msa1347880 MtrunA17_Chr3g0123521 32.883 444 261 12 199 616 115 547 5.46e-68 231
Msa1347880 MtrunA17_Chr5g0424241 32.506 443 269 9 198 616 123 559 2.94e-65 224
Msa1347880 MtrunA17_Chr3g0077321 33.333 396 248 6 236 616 150 544 1.73e-63 219
Msa1347880 MtrunA17_Chr1g0204141 30.568 458 281 12 176 619 46 480 1.94e-59 207
Msa1347880 MtrunA17_Chr2g0284071 29.325 474 264 16 199 616 182 640 1.66e-49 182
Msa1347880 MtrunA17_Chr4g0075311 31.130 469 261 17 199 616 134 591 2.40e-47 175
Msa1347880 MtrunA17_Chr4g0003561 27.068 399 235 13 236 616 78 438 5.83e-31 125
Msa1347880 MtrunA17_Chr7g0220381 29.310 290 190 6 236 510 101 390 1.60e-29 124
Msa1347880 MtrunA17_Chr1g0146501 27.273 330 222 7 196 510 56 382 2.22e-26 114
Msa1347880 MtrunA17_Chr3g0127811 27.541 305 200 7 217 510 48 342 5.79e-23 102
Msa1347880 MtrunA17_Chr2g0298881 24.793 363 217 12 213 563 20 338 4.70e-21 95.5
Msa1347880 MtrunA17_Chr4g0002361 23.834 386 215 12 194 561 65 389 3.09e-20 93.6
Msa1347880 MtrunA17_Chr7g0240241 34.921 126 64 2 389 504 2 119 2.33e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1347880 AT2G44500.1 63.072 612 157 9 11 618 17 563 0.0 746
Msa1347880 AT3G07900.1 59.806 617 190 13 10 621 14 577 0.0 681
Msa1347880 AT5G63390.1 61.033 426 165 1 199 623 130 555 0.0 557
Msa1347880 AT2G44500.2 56.264 455 130 9 11 461 17 406 6.21e-162 470
Msa1347880 AT5G35570.1 37.358 439 243 11 198 619 220 643 4.66e-82 271
Msa1347880 AT1G76270.1 35.682 440 250 10 194 619 69 489 1.47e-78 260
Msa1347880 AT4G24530.1 35.808 458 241 11 199 616 72 516 3.03e-78 258
Msa1347880 AT1G20550.1 35.814 430 263 10 194 619 72 492 7.32e-78 258
Msa1347880 AT5G64600.1 36.199 442 245 11 199 617 88 515 9.20e-77 254
Msa1347880 AT3G54100.1 33.879 428 267 7 202 620 195 615 7.11e-76 254
Msa1347880 AT1G22460.1 35.616 438 245 10 202 616 134 557 2.21e-74 249
Msa1347880 AT5G65470.1 34.130 460 250 10 199 617 56 503 3.60e-74 246
Msa1347880 AT5G01100.1 34.419 430 262 8 202 619 190 611 5.93e-74 249
Msa1347880 AT2G37980.1 33.103 435 261 9 202 620 199 619 3.79e-73 247
Msa1347880 AT4G38390.1 38.462 377 203 7 235 596 125 487 2.05e-72 243
Msa1347880 AT2G03280.1 37.802 373 216 7 237 598 92 459 2.33e-72 241
Msa1347880 AT1G14020.1 36.181 398 233 8 237 619 95 486 3.62e-70 236
Msa1347880 AT5G15740.1 36.461 373 223 6 236 598 109 477 7.21e-70 235
Msa1347880 AT1G14970.2 33.333 438 256 9 201 616 9 432 3.31e-69 231
Msa1347880 AT1G14970.1 32.479 468 279 10 172 616 99 552 9.34e-68 231
Msa1347880 AT1G14970.3 33.738 412 245 7 226 616 2 406 1.02e-66 224
Msa1347880 AT2G03280.2 35.250 400 216 8 237 598 92 486 1.35e-66 226
Msa1347880 AT4G16650.2 40.103 389 217 11 236 617 125 504 1.59e-66 227
Msa1347880 AT4G16650.1 40.103 389 217 11 236 617 125 504 1.59e-66 227
Msa1347880 AT3G02250.1 35.092 379 220 6 236 598 109 477 3.06e-66 226
Msa1347880 AT1G04910.1 30.979 439 276 11 191 616 50 474 3.88e-65 223
Msa1347880 AT3G26370.1 33.668 398 244 8 236 616 161 555 9.06e-65 223
Msa1347880 AT1G38065.2 33.092 414 253 10 224 616 18 428 2.73e-63 216
Msa1347880 AT1G38065.1 33.333 402 245 9 236 616 39 438 3.98e-63 216
Msa1347880 AT1G35510.1 32.118 439 262 9 202 618 134 558 9.07e-63 218
Msa1347880 AT2G01480.1 32.723 437 258 10 201 615 128 550 4.58e-62 216
Msa1347880 AT1G38131.1 33.092 414 253 10 224 616 147 557 4.71e-62 216
Msa1347880 AT2G01480.2 33.671 395 231 7 201 575 128 511 3.32e-60 210
Msa1347880 AT1G62330.1 29.193 483 259 15 198 618 190 651 1.25e-54 197
Msa1347880 AT1G11990.1 31.532 444 267 15 198 617 159 589 1.64e-52 190
Msa1347880 AT1G11990.2 29.106 481 267 15 198 617 144 611 2.76e-47 176
Msa1347880 AT1G29200.4 32.613 463 235 18 212 616 50 493 3.37e-47 173
Msa1347880 AT1G29200.1 32.613 463 235 18 212 616 50 493 3.37e-47 173
Msa1347880 AT1G29200.2 32.613 463 235 18 212 616 166 609 1.04e-46 174
Msa1347880 AT1G29200.3 33.333 432 222 16 238 616 1 419 1.32e-45 167
Msa1347880 AT3G30300.2 32.414 290 181 6 236 510 103 392 2.83e-34 139
Msa1347880 AT3G30300.1 32.414 290 181 6 236 510 103 392 2.83e-34 139
Msa1347880 AT1G52630.1 24.480 433 280 13 195 616 39 435 8.09e-30 123
Msa1347880 AT3G26370.2 32.967 182 108 4 236 404 161 341 9.17e-29 119
Msa1347880 AT3G03810.2 30.375 293 183 7 236 510 92 381 4.86e-27 116
Msa1347880 AT3G03810.1 30.375 293 183 7 236 510 92 381 4.86e-27 116
Msa1347880 AT1G52630.2 24.802 379 241 12 249 616 2 347 2.19e-25 108

Find 170 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTTATGGTGGTTGTTTC+TGG 0.073685 tig0010124:+47057 Msa1347880:CDS
GCTTAATATGTATGCAATTT+AGG 0.118952 tig0010124:+49987 Msa1347880:three_prime_UTR
TGTATGTAACATCCCTTTAA+TGG 0.185995 tig0010124:-50021 None:intergenic
ACCAAACCCATTTGAGATTA+AGG 0.186427 tig0010124:-46650 None:intergenic
GCCATCTCATGGAGGAAATA+TGG 0.218103 tig0010124:+49043 Msa1347880:CDS
GTTGTTATTGCTAGGATTCT+TGG 0.223923 tig0010124:+47117 Msa1347880:CDS
ATGACATTAACTTGCAAAAT+AGG 0.227744 tig0010124:-47156 None:intergenic
TCTTCACTACCTTAACAAAA+TGG 0.237775 tig0010124:+46500 Msa1347880:CDS
TATAGGTTGCTTAAAGCTTT+AGG 0.261962 tig0010124:+48816 Msa1347880:intron
CATACATATTAAGCATATTA+AGG 0.267084 tig0010124:-49978 None:intergenic
GGTTTCCTGTGATCCATTAA+AGG 0.271188 tig0010124:+50008 Msa1347880:three_prime_UTR
GAGGGAAGAATTCAGAAAAT+AGG 0.283536 tig0010124:-49603 None:intergenic
GACCAGCCATCTTTCTTTCA+TGG 0.284935 tig0010124:-48388 None:intergenic
AGATTCAATGCCAACGCTTT+TGG 0.292436 tig0010124:+49777 Msa1347880:three_prime_UTR
GTTTCCACATCTTTATAATA+AGG 0.294769 tig0010124:+48920 Msa1347880:CDS
ACTACTTGGAGGCTACTTTC+AGG 0.295888 tig0010124:+49885 Msa1347880:three_prime_UTR
TTTGCAAGTTAATGTCATTT+GGG 0.301248 tig0010124:+47161 Msa1347880:CDS
AAATATGGGCCATGCGCTTC+AGG 0.329180 tig0010124:+49058 Msa1347880:CDS
GAAAAGCCCTTAATCTCAAA+TGG 0.333986 tig0010124:+46643 Msa1347880:CDS
CCAAACCCATTTGAGATTAA+GGG 0.341142 tig0010124:-46649 None:intergenic
CAAAACCCTTCAATCTCAAA+TGG 0.341182 tig0010124:+46760 Msa1347880:CDS
TCAAATTCACTTCCTTTGAT+TGG 0.342422 tig0010124:+46853 Msa1347880:CDS
CCCTTAATCTCAAATGGGTT+TGG 0.349127 tig0010124:+46649 Msa1347880:CDS
CTCAGAAACTATGTAATCTA+TGG 0.350072 tig0010124:-49003 None:intergenic
TGGAAGCAACCAGATGGGTT+AGG 0.362833 tig0010124:+46961 Msa1347880:CDS
TAGGATTCTTGGTGCTGCTT+TGG 0.371467 tig0010124:+47128 Msa1347880:CDS
ATGCTGTTAAACTCTGCTTC+AGG 0.374694 tig0010124:-49626 None:intergenic
AGGGAAGAATTCAGAAAATA+GGG 0.381917 tig0010124:-49602 None:intergenic
GTGAAAGAGAGTGGTAATTT+CGG 0.385717 tig0010124:+49833 Msa1347880:three_prime_UTR
TTGAATAGAAGAAGAAGAAA+TGG 0.388256 tig0010124:-46419 None:intergenic
TGGTTCAAAATCTGAACTTA+AGG 0.388422 tig0010124:+46669 Msa1347880:CDS
GTTAGGGTATAAGCCTTGTT+TGG 0.390330 tig0010124:+46978 Msa1347880:CDS
TGACTTGGAGGAGGAAGAAA+AGG 0.390574 tig0010124:+46912 Msa1347880:CDS
CTACTGTACATATACAGATA+TGG 0.391211 tig0010124:+50222 Msa1347880:three_prime_UTR
GTGAGGACTGGTTGTCTACC+TGG 0.392388 tig0010124:+48281 Msa1347880:CDS
GAATTGCATCAGAATTCATT+AGG 0.395674 tig0010124:+49656 Msa1347880:CDS
TTGCACATGCACTCCGGAAC+AGG 0.396099 tig0010124:-49728 None:intergenic
GGATTGTGAAGAATAGAAAA+AGG 0.396440 tig0010124:+47034 Msa1347880:CDS
TGTGGAAACTCATGGATTAA+TGG 0.400222 tig0010124:-48906 None:intergenic
GAAGAATGGTAGAGAGAGAA+AGG 0.401006 tig0010124:-46136 None:intergenic
CAACAAAGCTTTGTTGTGTT+GGG 0.401012 tig0010124:-46238 None:intergenic
GTTTCCTGTGATCCATTAAA+GGG 0.401903 tig0010124:+50009 Msa1347880:three_prime_UTR
GAGTTGAAAAGAGTGAGTTT+TGG 0.403781 tig0010124:+46941 Msa1347880:CDS
TCTCTCTCTTTCATCTTCCA+TGG 0.410326 tig0010124:+46333 Msa1347880:exon
TTGTTTCCAAGTTCTTGAAC+TGG 0.412948 tig0010124:-48188 None:intergenic
TTGATCCCTCGAAAACTACT+TGG 0.417380 tig0010124:+49871 Msa1347880:three_prime_UTR
TCTTTCTATAGATCTTGTAT+AGG 0.417439 tig0010124:+50063 Msa1347880:three_prime_UTR
ACCTTGCTAGTCCTGAGTTC+CGG 0.418631 tig0010124:-49683 None:intergenic
GCGAAACCAGTTCAAGAACT+TGG 0.420208 tig0010124:+48182 Msa1347880:CDS
GGTAGTGAAGAAGAAGTTAG+AGG 0.420986 tig0010124:-46488 None:intergenic
TGCGAAGAAAGCTTCTCTAA+TGG 0.432693 tig0010124:+48977 Msa1347880:CDS
GGAAGCAACCAGATGGGTTA+GGG 0.436626 tig0010124:+46962 Msa1347880:CDS
ATGCTAGAATTTATTGGGCC+GGG 0.436672 tig0010124:+48850 Msa1347880:CDS
ACAACAAAGCTTTGTTGTGT+TGG 0.439559 tig0010124:-46239 None:intergenic
TCAAACCCATTTGAGATTGA+AGG 0.439951 tig0010124:-46766 None:intergenic
TGAAACCACGCGTACATCAT+TGG 0.441708 tig0010124:-47641 None:intergenic
AGAGAAAGAGAGAGGAAGAA+TGG 0.448867 tig0010124:-46150 None:intergenic
AGAGAAGCTTTCTTCGCAAA+TGG 0.451160 tig0010124:-48972 None:intergenic
GTATTTCTTGTGTCCTGCAT+AGG 0.451809 tig0010124:-49552 None:intergenic
GGCTTATACCCTAACCCATC+TGG 0.457469 tig0010124:-46970 None:intergenic
TGTCACGAAGTATCCTGTTC+CGG 0.458292 tig0010124:+49715 Msa1347880:CDS
GTTATTCCTTCCAGGGTCAC+AGG 0.458415 tig0010124:+49528 Msa1347880:intron
TATAAAGATGTGGAAACTCA+TGG 0.469538 tig0010124:-48914 None:intergenic
GGAGGAGGAAGAAAAGGGTG+AGG 0.471319 tig0010124:+46918 Msa1347880:CDS
TCCACCCAATGGTTGTCCCC+CGG 0.472197 tig0010124:-48868 None:intergenic
AAAACCCTTCAATCTCAAAT+GGG 0.474207 tig0010124:+46761 Msa1347880:CDS
TGCTGTTAAACTCTGCTTCA+GGG 0.476049 tig0010124:-49625 None:intergenic
ATAGAAAATGGAATAATAAG+AGG 0.479152 tig0010124:-46177 None:intergenic
CCATCTCATGGAGGAAATAT+GGG 0.480168 tig0010124:+49044 Msa1347880:CDS
AGCTTAAATGTCAGCCACTC+AGG 0.482733 tig0010124:+49940 Msa1347880:three_prime_UTR
TAGCGCGAACGGATCCAACT+TGG 0.483932 tig0010124:-47727 None:intergenic
AAAAGCCCTTAATCTCAAAT+GGG 0.485351 tig0010124:+46644 Msa1347880:CDS
CCTTGCTCTTCATCTAAGAA+TGG 0.490124 tig0010124:+48244 Msa1347880:CDS
CTTATGGTGGTTGTTTCTGG+AGG 0.490684 tig0010124:+47060 Msa1347880:CDS
TGCTAGAATTTATTGGGCCG+GGG 0.491270 tig0010124:+48851 Msa1347880:CDS
TCCTAGTGAAGTTGACTTGG+AGG 0.491727 tig0010124:+46900 Msa1347880:CDS
AAGGATGTGTGGGTGAGGAC+TGG 0.493609 tig0010124:+48269 Msa1347880:CDS
AAGAGAGAGAAAGAGAGTAT+TGG 0.493917 tig0010124:-46320 None:intergenic
CAAACCCATTTGAGATTGAA+GGG 0.494557 tig0010124:-46765 None:intergenic
GATCTTCCTTTCAAGAGCTC+CGG 0.494862 tig0010124:-48353 None:intergenic
AATGCTAGAATTTATTGGGC+CGG 0.497393 tig0010124:+48849 Msa1347880:CDS
AAGGAAGATCTTGCATTACC+TGG 0.502870 tig0010124:+48939 Msa1347880:CDS
CTCTTCATGTCACTCCAAGT+TGG 0.504620 tig0010124:+47713 Msa1347880:CDS
AACTCAGGACTAGCAAGGTC+GGG 0.506943 tig0010124:+49687 Msa1347880:CDS
ATCCCTCGAAAACTACTTGG+AGG 0.507486 tig0010124:+49874 Msa1347880:three_prime_UTR
AGCCTTGTTTGGATTTCAGT+AGG 0.508226 tig0010124:+46989 Msa1347880:CDS
GCAAATGGTTCTAGTTCTCC+AGG 0.510375 tig0010124:-48957 None:intergenic
CCTTTGCAGTTCAACAGAGA+AGG 0.513180 tig0010124:+47975 Msa1347880:intron
TCTTTGTCCCTTGACTGCCA+TGG 0.516067 tig0010124:+48409 Msa1347880:CDS
GAGGAGAGAGAGAAAGAGAG+AGG 0.517704 tig0010124:-46158 None:intergenic
ATTATAGAAGAGAAAGTGAT+GGG 0.526617 tig0010124:+47013 Msa1347880:CDS
TCTTCATCTAAGAATGGAAA+AGG 0.529212 tig0010124:+48250 Msa1347880:CDS
GACTTGGAGGAGGAAGAAAA+GGG 0.531687 tig0010124:+46913 Msa1347880:CDS
ATGTCATTTGGGGAGATGAA+AGG 0.532142 tig0010124:+47172 Msa1347880:CDS
GCCTTGTTTGGATTTCAGTA+GGG 0.532530 tig0010124:+46990 Msa1347880:CDS
GGTAACATCCATGGCAGTCA+AGG 0.535475 tig0010124:-48417 None:intergenic
TCTTAGATGAAGAGCAAGGT+AGG 0.537764 tig0010124:-48240 None:intergenic
AACATTACATTACCAATCAA+AGG 0.538428 tig0010124:-46865 None:intergenic
ATGGAATTGATTATTTGTGA+AGG 0.540117 tig0010124:-46400 None:intergenic
GGTTCCTAGTGAAGTTGACT+TGG 0.540126 tig0010124:+46897 Msa1347880:CDS
GAATGAGAGGAGAGAACGAC+CGG 0.540471 tig0010124:+48334 Msa1347880:CDS
CGAAGCTTCTGAAGATCTGA+AGG 0.542834 tig0010124:-48044 None:intergenic
GTAGAGAGAGAAAGGGCGGC+GGG 0.543504 tig0010124:-46128 None:intergenic
TATTTACCTGGTAACATCCA+TGG 0.544732 tig0010124:-48426 None:intergenic
ACATCCCTTTAATGGATCAC+AGG 0.545504 tig0010124:-50013 None:intergenic
CAGGGTCACAGGGCCTATGC+AGG 0.546366 tig0010124:+49539 Msa1347880:intron
TCAGAATTCATTAGGACAGC+CGG 0.547453 tig0010124:+49664 Msa1347880:CDS
TGGAAAAGGATGTGTGGGTG+AGG 0.548660 tig0010124:+48264 Msa1347880:CDS
TAATGTAATGTTGCAAGCAA+AGG 0.548895 tig0010124:+46876 Msa1347880:CDS
AAGAATGGTAGAGAGAGAAA+GGG 0.551266 tig0010124:-46135 None:intergenic
CATTAGGACAGCCGGAACTC+AGG 0.555136 tig0010124:+49672 Msa1347880:CDS
AGAGGAGGACTTCCCTCCAC+TGG 0.555343 tig0010124:-47694 None:intergenic
TTGATGCTGTTGTTATTGCT+AGG 0.555554 tig0010124:+47109 Msa1347880:CDS
ACGAGATTGTAAAGAATGAG+AGG 0.556539 tig0010124:+48321 Msa1347880:CDS
GAACGACCGGAGCTCTTGAA+AGG 0.557470 tig0010124:+48347 Msa1347880:CDS
GATTATAGAAGAGAAAGTGA+TGG 0.557924 tig0010124:+47012 Msa1347880:CDS
GTAGATAATGAAGATGGAGC+TGG 0.560656 tig0010124:-50196 None:intergenic
TAGTTTGTAGATAATGAAGA+TGG 0.560810 tig0010124:-50202 None:intergenic
TTTACAATCTCGTCAAACTC+AGG 0.561693 tig0010124:-48311 None:intergenic
GAGGAGGAAGAAAAGGGTGA+GGG 0.561708 tig0010124:+46919 Msa1347880:CDS
TACCATGAAAGAAAGATGGC+TGG 0.562902 tig0010124:+48386 Msa1347880:CDS
CCCATATTTCCTCCATGAGA+TGG 0.566943 tig0010124:-49044 None:intergenic
TTATGGTGGTTGTTTCTGGA+GGG 0.569275 tig0010124:+47061 Msa1347880:CDS
TTTGATTCAAAATCTGAACT+TGG 0.571345 tig0010124:+46784 Msa1347880:CDS
TCTTCAGAAGCTTCGATGCA+AGG 0.571820 tig0010124:+48052 Msa1347880:CDS
CAACTTGGAGTGACATGAAG+AGG 0.572279 tig0010124:-47712 None:intergenic
TTCAACATTTGTAGCACATG+GGG 0.574252 tig0010124:-46623 None:intergenic
TAGTGAAGTTGACTTGGAGG+AGG 0.574980 tig0010124:+46903 Msa1347880:CDS
TTTATTCAGATATATGTACA+AGG 0.576413 tig0010124:-50127 None:intergenic
AAAAGAAGAACAATCTTGAA+GGG 0.576810 tig0010124:-46528 None:intergenic
GACTTACCATGAAAGAAAGA+TGG 0.579868 tig0010124:+48382 Msa1347880:CDS
TTTGTCATCAAGTGTGTGGA+TGG 0.580452 tig0010124:-47670 None:intergenic
GAACTCAGGACTAGCAAGGT+CGG 0.582708 tig0010124:+49686 Msa1347880:CDS
TTATTCCTTCCAGGGTCACA+GGG 0.583835 tig0010124:+49529 Msa1347880:intron
CTTGGATTCAAGGCTATCAA+AGG 0.589401 tig0010124:+48016 Msa1347880:CDS
TCTTCCTTATTATAAAGATG+TGG 0.591443 tig0010124:-48924 None:intergenic
TGACTGCCATGGATGTTACC+AGG 0.594053 tig0010124:+48420 Msa1347880:CDS
TTTCAACATTTGTAGCACAT+GGG 0.594469 tig0010124:-46624 None:intergenic
GGTAGAGAGAGAAAGGGCGG+CGG 0.602337 tig0010124:-46129 None:intergenic
TTGCAAGTTAATGTCATTTG+GGG 0.605474 tig0010124:+47162 Msa1347880:CDS
GCTAGAATTTATTGGGCCGG+GGG 0.607510 tig0010124:+48852 Msa1347880:CDS
GTTAAACTCTGCTTCAGGGA+GGG 0.608437 tig0010124:-49621 None:intergenic
TCAGGACTAGCAAGGTCGGG+AGG 0.608590 tig0010124:+49690 Msa1347880:CDS
CTTAGATGAAGAGCAAGGTA+GGG 0.612955 tig0010124:-48239 None:intergenic
TGGCTTTGTCATCAAGTGTG+TGG 0.615307 tig0010124:-47674 None:intergenic
TCCTCCAAGTCAACTTCACT+AGG 0.617579 tig0010124:-46901 None:intergenic
CCATTCTTAGATGAAGAGCA+AGG 0.618532 tig0010124:-48244 None:intergenic
ATTGTTCTTTGACTTAGCCA+TGG 0.618663 tig0010124:-46350 None:intergenic
GTAACATCCATGGCAGTCAA+GGG 0.621567 tig0010124:-48416 None:intergenic
TGTTTCAATGAATAAAGATG+AGG 0.622634 tig0010124:+46810 Msa1347880:CDS
CTTGATGACAAAGCCAGTGG+AGG 0.623445 tig0010124:+47681 Msa1347880:CDS
GCTGAGAGAATGCAGAGCAA+AGG 0.623716 tig0010124:+48215 Msa1347880:CDS
TTGATGACAAAGCCAGTGGA+GGG 0.626586 tig0010124:+47682 Msa1347880:CDS
AAGAATGGAAAAGGATGTGT+GGG 0.627477 tig0010124:+48259 Msa1347880:CDS
TCAAACTCAGGACTCAGACC+AGG 0.627651 tig0010124:-48299 None:intergenic
CAGGACTAGCAAGGTCGGGA+GGG 0.628531 tig0010124:+49691 Msa1347880:CDS
TTTGGTAAAATCTGAACTTG+GGG 0.638044 tig0010124:+46732 Msa1347880:CDS
AATGGTAGAGAGAGAAAGGG+CGG 0.639855 tig0010124:-46132 None:intergenic
GAGTCGTTGCACATGCACTC+CGG 0.647476 tig0010124:-49734 None:intergenic
CTTGGAGTGACATGAAGAGG+AGG 0.650220 tig0010124:-47709 None:intergenic
TCCCTACTGAAATCCAAACA+AGG 0.655365 tig0010124:-46991 None:intergenic
ATACTGAAAGTGAAAGAGAG+TGG 0.662691 tig0010124:+49824 Msa1347880:three_prime_UTR
TAAGAATGGAAAAGGATGTG+TGG 0.664578 tig0010124:+48258 Msa1347880:CDS
GCCGGAACTCAGGACTAGCA+AGG 0.665088 tig0010124:+49682 Msa1347880:CDS
CTGGAGGGATGAATCAGCAG+AGG 0.666148 tig0010124:+47076 Msa1347880:CDS
ATAGTCATACCTGAAGCGCA+TGG 0.668438 tig0010124:-49067 None:intergenic
ACACTTGATGACAAAGCCAG+TGG 0.673399 tig0010124:+47678 Msa1347880:CDS
TGTTAAACTCTGCTTCAGGG+AGG 0.699216 tig0010124:-49622 None:intergenic
TCTTGCCAATGATGTACGCG+TGG 0.704047 tig0010124:+47636 Msa1347880:CDS
ATAATGCGTGTACACCTGAG+TGG 0.769432 tig0010124:-49954 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTTTTTACTATAGAAAA+TGG - tig0010124:46192-46211 None:intergenic 15.0%
!!! AATAAAGATGAGATTTTTAA+TGG + tig0010124:46703-46722 Msa1347880:CDS 15.0%
!! ATAAAATGAAGATTTATGTA+AGG + tig0010124:47251-47270 Msa1347880:intron 15.0%
!! ATATTTAGCTGTTATTAATT+TGG + tig0010124:47393-47412 Msa1347880:intron 15.0%
!! AAACAAAATCAAAATCAATA+AGG - tig0010124:47569-47588 None:intergenic 15.0%
!!! TTTATTTGTTTTGGATTTAT+AGG + tig0010124:48799-48818 Msa1347880:intron 15.0%
!! AAAAAAATGCTAGAATTTAT+TGG + tig0010124:48844-48863 Msa1347880:CDS 15.0%
!! AAAAAATGCTAGAATTTATT+GGG + tig0010124:48845-48864 Msa1347880:CDS 15.0%
!! TTATTAAATATGAAGACTAA+AGG - tig0010124:49275-49294 None:intergenic 15.0%
!! ATAGAAAATGGAATAATAAG+AGG - tig0010124:46180-46199 None:intergenic 20.0%
!!! GTTTTTTTTTGTTGAATGTT+TGG - tig0010124:46301-46320 None:intergenic 20.0%
!!! ATTTTTGTTGATGATTTCTT+TGG - tig0010124:46466-46485 None:intergenic 20.0%
!!! AGGTTTAGTTATTACATTTT+TGG + tig0010124:47271-47290 Msa1347880:intron 20.0%
!! AGAAGAATTTAATATTTACC+TGG - tig0010124:48441-48460 None:intergenic 20.0%
!!! AAATTCTTCTACTTTTGTAT+AGG + tig0010124:48451-48470 Msa1347880:intron 20.0%
!! TTTACACTTATGAAACTATT+TGG + tig0010124:48513-48532 Msa1347880:intron 20.0%
!! TTACACTTATGAAACTATTT+GGG + tig0010124:48514-48533 Msa1347880:intron 20.0%
!!! AGAGTTTTGTTTATTTGTTT+TGG + tig0010124:48790-48809 Msa1347880:intron 20.0%
!!! TGTGCTTTTAGTAATTAAAA+AGG + tig0010124:49301-49320 Msa1347880:intron 20.0%
!!! AGGATACAATCAATTATTTT+AGG + tig0010124:49328-49347 Msa1347880:intron 20.0%
!!! GGATACAATCAATTATTTTA+GGG + tig0010124:49329-49348 Msa1347880:intron 20.0%
!!! TTATGGAGAAAATATGTTTT+TGG - tig0010124:49381-49400 None:intergenic 20.0%
!! AATTGCATGATTACAATTTA+TGG - tig0010124:49398-49417 None:intergenic 20.0%
!! TTTGGTATAAAAAGATTACA+CGG + tig0010124:49795-49814 Msa1347880:three_prime_UTR 20.0%
!! CATACATATTAAGCATATTA+AGG - tig0010124:49981-50000 None:intergenic 20.0%
!! TTTATTCAGATATATGTACA+AGG - tig0010124:50130-50149 None:intergenic 20.0%
!!! AAACAATCATAAAATTTTGC+AGG - tig0010124:50176-50195 None:intergenic 20.0%
! ATGGAATTGATTATTTGTGA+AGG - tig0010124:46403-46422 None:intergenic 25.0%
! TTGAATAGAAGAAGAAGAAA+TGG - tig0010124:46422-46441 None:intergenic 25.0%
! AAAAGAAGAACAATCTTGAA+GGG - tig0010124:46531-46550 None:intergenic 25.0%
! AAAAAGAAGAACAATCTTGA+AGG - tig0010124:46532-46551 None:intergenic 25.0%
!!! TTTTTCACACTCTTATTTCT+TGG + tig0010124:46547-46566 Msa1347880:CDS 25.0%
!!! GTTTTTGCTTTGTTTATGAT+TGG + tig0010124:46571-46590 Msa1347880:CDS 25.0%
!! AAAGATGAGATTTTTAATGG+TGG + tig0010124:46706-46725 Msa1347880:CDS 25.0%
!! TTTTGGTAAAATCTGAACTT+GGG + tig0010124:46731-46750 Msa1347880:CDS 25.0%
! TTTGATTCAAAATCTGAACT+TGG + tig0010124:46784-46803 Msa1347880:CDS 25.0%
! TGTTTCAATGAATAAAGATG+AGG + tig0010124:46693-46712 Msa1347880:CDS 25.0%
! AACATTACATTACCAATCAA+AGG - tig0010124:46868-46887 None:intergenic 25.0%
! ATTATAGAAGAGAAAGTGAT+GGG + tig0010124:47013-47032 Msa1347880:CDS 25.0%
!!! GAATAGAAAAAGGTATCTTA+TGG + tig0010124:47044-47063 Msa1347880:CDS 25.0%
!!! ATGACATTAACTTGCAAAAT+AGG - tig0010124:47159-47178 None:intergenic 25.0%
!! TTTTGCAAGTTAATGTCATT+TGG + tig0010124:47160-47179 Msa1347880:CDS 25.0%
!! TTTGCAAGTTAATGTCATTT+GGG + tig0010124:47161-47180 Msa1347880:CDS 25.0%
! TTTACTATTCTTCTTGTTCA+TGG + tig0010124:47200-47219 Msa1347880:intron 25.0%
! GCTAAATATATATCCAAATC+TGG - tig0010124:47382-47401 None:intergenic 25.0%
!!! TCTTATGTTTTAGCATCTTT+AGG + tig0010124:47785-47804 Msa1347880:intron 25.0%
! TTCTGTGGAAAGAAAAATTT+GGG + tig0010124:47926-47945 Msa1347880:intron 25.0%
! ATCTTCATTTGTGTAACAAT+CGG + tig0010124:48095-48114 Msa1347880:intron 25.0%
! GTTTCCACATCTTTATAATA+AGG + tig0010124:48920-48939 Msa1347880:CDS 25.0%
! TCTTCCTTATTATAAAGATG+TGG - tig0010124:48927-48946 None:intergenic 25.0%
! GTAATCATGCTTACATATAT+TGG + tig0010124:49161-49180 Msa1347880:intron 25.0%
! ATACAGTATATATGAATGCA+TGG - tig0010124:49187-49206 None:intergenic 25.0%
!! AGGTGAGTACAAATTTTATA+GGG - tig0010124:49255-49274 None:intergenic 25.0%
!! AAGGTGAGTACAAATTTTAT+AGG - tig0010124:49256-49275 None:intergenic 25.0%
! TTAGTAATTAAAAAGGACTG+AGG + tig0010124:49308-49327 Msa1347880:intron 25.0%
!!! AATTATTTTAGGGATGTTGA+TGG + tig0010124:49339-49358 Msa1347880:intron 25.0%
! AATTAAGATAGTCACATTGA+TGG + tig0010124:49414-49433 Msa1347880:intron 25.0%
! GCTTAATATGTATGCAATTT+AGG + tig0010124:49987-50006 Msa1347880:three_prime_UTR 25.0%
! TCTTTCTATAGATCTTGTAT+AGG + tig0010124:50063-50082 Msa1347880:three_prime_UTR 25.0%
!! TAGTTTGTAGATAATGAAGA+TGG - tig0010124:50205-50224 None:intergenic 25.0%
TCTTCACTACCTTAACAAAA+TGG + tig0010124:46500-46519 Msa1347880:CDS 30.0%
! AGGGTTTTTCCATTTTGTTA+AGG - tig0010124:46512-46531 None:intergenic 30.0%
TTTCAACATTTGTAGCACAT+GGG - tig0010124:46627-46646 None:intergenic 30.0%
! TTTTCAACATTTGTAGCACA+TGG - tig0010124:46628-46647 None:intergenic 30.0%
AAAAGCCCTTAATCTCAAAT+GGG + tig0010124:46644-46663 Msa1347880:CDS 30.0%
TGGTTCAAAATCTGAACTTA+AGG + tig0010124:46669-46688 Msa1347880:CDS 30.0%
!! GATTTTTAATGGTGGTGTTT+TGG + tig0010124:46714-46733 Msa1347880:CDS 30.0%
!! GTTTTGGTAAAATCTGAACT+TGG + tig0010124:46730-46749 Msa1347880:CDS 30.0%
TTTGGTAAAATCTGAACTTG+GGG + tig0010124:46732-46751 Msa1347880:CDS 30.0%
AAAACCCTTCAATCTCAAAT+GGG + tig0010124:46761-46780 Msa1347880:CDS 30.0%
!!! AAAGATGAGGTTTTGAATGA+TGG + tig0010124:46823-46842 Msa1347880:CDS 30.0%
TCAAATTCACTTCCTTTGAT+TGG + tig0010124:46853-46872 Msa1347880:CDS 30.0%
TAATGTAATGTTGCAAGCAA+AGG + tig0010124:46876-46895 Msa1347880:CDS 30.0%
GATTATAGAAGAGAAAGTGA+TGG + tig0010124:47012-47031 Msa1347880:CDS 30.0%
GGATTGTGAAGAATAGAAAA+AGG + tig0010124:47034-47053 Msa1347880:CDS 30.0%
!! TAGAAAAAGGTATCTTATGG+TGG + tig0010124:47047-47066 Msa1347880:CDS 30.0%
! TTGCAAGTTAATGTCATTTG+GGG + tig0010124:47162-47181 Msa1347880:CDS 30.0%
ATCTTGCTAATGACCAATAT+TGG + tig0010124:47300-47319 Msa1347880:intron 30.0%
CTTAGATTATGCTCCAATAT+TGG - tig0010124:47316-47335 None:intergenic 30.0%
AACAAGATCAAACTATGCTT+AGG - tig0010124:47339-47358 None:intergenic 30.0%
GCAAAAGTAGACAAAAACTT+AGG - tig0010124:47818-47837 None:intergenic 30.0%
! AATAAAAGCTTTGACTTCTG+TGG + tig0010124:47911-47930 Msa1347880:intron 30.0%
CTTCTGTGGAAAGAAAAATT+TGG + tig0010124:47925-47944 Msa1347880:intron 30.0%
TAAAAGCAACCTGAAAACAT+AGG - tig0010124:48148-48167 None:intergenic 30.0%
TCTTCATCTAAGAATGGAAA+AGG + tig0010124:48250-48269 Msa1347880:CDS 30.0%
! CTCTTATTCGAGTTTATTAC+TGG + tig0010124:48488-48507 Msa1347880:intron 30.0%
AATAAGCTGGAAACAGTTTA+TGG - tig0010124:48566-48585 None:intergenic 30.0%
! ACTGATTTCATAAGCTATCT+TGG - tig0010124:48601-48620 None:intergenic 30.0%
TGTTTATCCAAAGATCCTAT+AGG + tig0010124:48729-48748 Msa1347880:intron 30.0%
TATAGGTTGCTTAAAGCTTT+AGG + tig0010124:48816-48835 Msa1347880:intron 30.0%
TATAAAGATGTGGAAACTCA+TGG - tig0010124:48917-48936 None:intergenic 30.0%
CTCAGAAACTATGTAATCTA+TGG - tig0010124:49006-49025 None:intergenic 30.0%
TTATAGGGACTAAAGTTGAA+AGG - tig0010124:49240-49259 None:intergenic 30.0%
!! ATGCATTTGTCTTTTGTTTG+GGG - tig0010124:49582-49601 None:intergenic 30.0%
!! GATGCATTTGTCTTTTGTTT+GGG - tig0010124:49583-49602 None:intergenic 30.0%
AGGGAAGAATTCAGAAAATA+GGG - tig0010124:49605-49624 None:intergenic 30.0%
GAATTGCATCAGAATTCATT+AGG + tig0010124:49656-49675 Msa1347880:CDS 30.0%
!! TCTTTTTATACCAAAAGCGT+TGG - tig0010124:49790-49809 None:intergenic 30.0%
!!! AATGTTGCTTTTGAGAACTA+TGG - tig0010124:49914-49933 None:intergenic 30.0%
TGTATGTAACATCCCTTTAA+TGG - tig0010124:50024-50043 None:intergenic 30.0%
CTACTGTACATATACAGATA+TGG + tig0010124:50222-50241 Msa1347880:three_prime_UTR 30.0%
AAGAATGGTAGAGAGAGAAA+GGG - tig0010124:46138-46157 None:intergenic 35.0%
!! CAACAAAGCTTTGTTGTGTT+GGG - tig0010124:46241-46260 None:intergenic 35.0%
!! ACAACAAAGCTTTGTTGTGT+TGG - tig0010124:46242-46261 None:intergenic 35.0%
! AAGAGAGAGAAAGAGAGTAT+TGG - tig0010124:46323-46342 None:intergenic 35.0%
! ATTGTTCTTTGACTTAGCCA+TGG - tig0010124:46353-46372 None:intergenic 35.0%
!!! GCACATGGGGTTTTAAAAAA+CGG - tig0010124:46613-46632 None:intergenic 35.0%
TTCAACATTTGTAGCACATG+GGG - tig0010124:46626-46645 None:intergenic 35.0%
GAAAAGCCCTTAATCTCAAA+TGG + tig0010124:46643-46662 Msa1347880:CDS 35.0%
! CCAAACCCATTTGAGATTAA+GGG - tig0010124:46652-46671 None:intergenic 35.0%
! ACCAAACCCATTTGAGATTA+AGG - tig0010124:46653-46672 None:intergenic 35.0%
CAAAACCCTTCAATCTCAAA+TGG + tig0010124:46760-46779 Msa1347880:CDS 35.0%
! CAAACCCATTTGAGATTGAA+GGG - tig0010124:46768-46787 None:intergenic 35.0%
! TCAAACCCATTTGAGATTGA+AGG - tig0010124:46769-46788 None:intergenic 35.0%
! GAGTTGAAAAGAGTGAGTTT+TGG + tig0010124:46941-46960 Msa1347880:CDS 35.0%
! TATCTTATGGTGGTTGTTTC+TGG + tig0010124:47057-47076 Msa1347880:CDS 35.0%
! TTGATGCTGTTGTTATTGCT+AGG + tig0010124:47109-47128 Msa1347880:CDS 35.0%
! GTTGTTATTGCTAGGATTCT+TGG + tig0010124:47117-47136 Msa1347880:CDS 35.0%
TGTTTGATGAAGACCAGATT+TGG + tig0010124:47366-47385 Msa1347880:intron 35.0%
TTGTTTCCAAGTTCTTGAAC+TGG - tig0010124:48191-48210 None:intergenic 35.0%
TAAGAATGGAAAAGGATGTG+TGG + tig0010124:48258-48277 Msa1347880:CDS 35.0%
AAGAATGGAAAAGGATGTGT+GGG + tig0010124:48259-48278 Msa1347880:CDS 35.0%
TTTACAATCTCGTCAAACTC+AGG - tig0010124:48314-48333 None:intergenic 35.0%
ACGAGATTGTAAAGAATGAG+AGG + tig0010124:48321-48340 Msa1347880:CDS 35.0%
GACTTACCATGAAAGAAAGA+TGG + tig0010124:48382-48401 Msa1347880:CDS 35.0%
TATTTACCTGGTAACATCCA+TGG - tig0010124:48429-48448 None:intergenic 35.0%
! CTTTTGTATAGGAGTCTGTT+TGG + tig0010124:48462-48481 Msa1347880:intron 35.0%
AAACTATTTGGGAGAGCTTA+TGG + tig0010124:48525-48544 Msa1347880:intron 35.0%
AATGCTAGAATTTATTGGGC+CGG + tig0010124:48849-48868 Msa1347880:CDS 35.0%
! TGTGGAAACTCATGGATTAA+TGG - tig0010124:48909-48928 None:intergenic 35.0%
!!! GTTGATGGTCGTGATTTTAT+AGG + tig0010124:49354-49373 Msa1347880:intron 35.0%
ACCTAAATGTTATTCCTTCC+AGG + tig0010124:49520-49539 Msa1347880:intron 35.0%
CCTAAATGTTATTCCTTCCA+GGG + tig0010124:49521-49540 Msa1347880:intron 35.0%
! GGATGCATTTGTCTTTTGTT+TGG - tig0010124:49584-49603 None:intergenic 35.0%
GAGGGAAGAATTCAGAAAAT+AGG - tig0010124:49606-49625 None:intergenic 35.0%
ATACTGAAAGTGAAAGAGAG+TGG + tig0010124:49824-49843 Msa1347880:three_prime_UTR 35.0%
GTGAAAGAGAGTGGTAATTT+CGG + tig0010124:49833-49852 Msa1347880:three_prime_UTR 35.0%
GTTTCCTGTGATCCATTAAA+GGG + tig0010124:50009-50028 Msa1347880:three_prime_UTR 35.0%
GAAGAATGGTAGAGAGAGAA+AGG - tig0010124:46139-46158 None:intergenic 40.0%
AGAGAAAGAGAGAGGAAGAA+TGG - tig0010124:46153-46172 None:intergenic 40.0%
TCTCTCTCTTTCATCTTCCA+TGG + tig0010124:46333-46352 Msa1347880:exon 40.0%
GGTAGTGAAGAAGAAGTTAG+AGG - tig0010124:46491-46510 None:intergenic 40.0%
! CCCTTAATCTCAAATGGGTT+TGG + tig0010124:46649-46668 Msa1347880:CDS 40.0%
!!! AGTTTTGGAAGCAACCAGAT+GGG + tig0010124:46956-46975 Msa1347880:CDS 40.0%
!! GTTAGGGTATAAGCCTTGTT+TGG + tig0010124:46978-46997 Msa1347880:CDS 40.0%
!! AGCCTTGTTTGGATTTCAGT+AGG + tig0010124:46989-47008 Msa1347880:CDS 40.0%
!! GCCTTGTTTGGATTTCAGTA+GGG + tig0010124:46990-47009 Msa1347880:CDS 40.0%
TCCCTACTGAAATCCAAACA+AGG - tig0010124:46994-47013 None:intergenic 40.0%
!! TTATGGTGGTTGTTTCTGGA+GGG + tig0010124:47061-47080 Msa1347880:CDS 40.0%
! ATGTCATTTGGGGAGATGAA+AGG + tig0010124:47172-47191 Msa1347880:CDS 40.0%
TTTGTCATCAAGTGTGTGGA+TGG - tig0010124:47673-47692 None:intergenic 40.0%
!! TGTTTTGCTTTTACGCAGCT+TGG + tig0010124:47998-48017 Msa1347880:CDS 40.0%
! TTTTACGCAGCTTGGATTCA+AGG + tig0010124:48006-48025 Msa1347880:CDS 40.0%
CTTGGATTCAAGGCTATCAA+AGG + tig0010124:48016-48035 Msa1347880:CDS 40.0%
! CTCATCTCACCTATGTTTTC+AGG + tig0010124:48136-48155 Msa1347880:intron 40.0%
CTTAGATGAAGAGCAAGGTA+GGG - tig0010124:48242-48261 None:intergenic 40.0%
TCTTAGATGAAGAGCAAGGT+AGG - tig0010124:48243-48262 None:intergenic 40.0%
CCATTCTTAGATGAAGAGCA+AGG - tig0010124:48247-48266 None:intergenic 40.0%
CCTTGCTCTTCATCTAAGAA+TGG + tig0010124:48244-48263 Msa1347880:CDS 40.0%
TACCATGAAAGAAAGATGGC+TGG + tig0010124:48386-48405 Msa1347880:CDS 40.0%
AGCTATCTTGGAGATCTTGT+GGG - tig0010124:48589-48608 None:intergenic 40.0%
AAGCTATCTTGGAGATCTTG+TGG - tig0010124:48590-48609 None:intergenic 40.0%
AGTGAAGCCTATAGGATCTT+TGG - tig0010124:48739-48758 None:intergenic 40.0%
CACTGAAAAGTGAAGCCTAT+AGG - tig0010124:48747-48766 None:intergenic 40.0%
!! CTATAGGCTTCACTTTTCAG+TGG + tig0010124:48745-48764 Msa1347880:intron 40.0%
ATGCTAGAATTTATTGGGCC+GGG + tig0010124:48850-48869 Msa1347880:CDS 40.0%
! AAAGCTTCTTTTCCACCCAA+TGG - tig0010124:48882-48901 None:intergenic 40.0%
AAGGAAGATCTTGCATTACC+TGG + tig0010124:48939-48958 Msa1347880:CDS 40.0%
AGAGAAGCTTTCTTCGCAAA+TGG - tig0010124:48975-48994 None:intergenic 40.0%
TGCGAAGAAAGCTTCTCTAA+TGG + tig0010124:48977-48996 Msa1347880:CDS 40.0%
! GATGTTTTCATGCCATCTCA+TGG + tig0010124:49032-49051 Msa1347880:CDS 40.0%
CCATCTCATGGAGGAAATAT+GGG + tig0010124:49044-49063 Msa1347880:CDS 40.0%
CCCTGGAAGGAATAACATTT+AGG - tig0010124:49524-49543 None:intergenic 40.0%
GTATTTCTTGTGTCCTGCAT+AGG - tig0010124:49555-49574 None:intergenic 40.0%
TGCTGTTAAACTCTGCTTCA+GGG - tig0010124:49628-49647 None:intergenic 40.0%
ATGCTGTTAAACTCTGCTTC+AGG - tig0010124:49629-49648 None:intergenic 40.0%
TCAGAATTCATTAGGACAGC+CGG + tig0010124:49664-49683 Msa1347880:CDS 40.0%
! AGATTCAATGCCAACGCTTT+TGG + tig0010124:49777-49796 Msa1347880:three_prime_UTR 40.0%
TTGATCCCTCGAAAACTACT+TGG + tig0010124:49871-49890 Msa1347880:three_prime_UTR 40.0%
GGTTTCCTGTGATCCATTAA+AGG + tig0010124:50008-50027 Msa1347880:three_prime_UTR 40.0%
! ACATCCCTTTAATGGATCAC+AGG - tig0010124:50016-50035 None:intergenic 40.0%
GTAGATAATGAAGATGGAGC+TGG - tig0010124:50199-50218 None:intergenic 40.0%
AATGGTAGAGAGAGAAAGGG+CGG - tig0010124:46135-46154 None:intergenic 45.0%
GGTTCCTAGTGAAGTTGACT+TGG + tig0010124:46897-46916 Msa1347880:CDS 45.0%
!! TCCTAGTGAAGTTGACTTGG+AGG + tig0010124:46900-46919 Msa1347880:CDS 45.0%
TCCTCCAAGTCAACTTCACT+AGG - tig0010124:46904-46923 None:intergenic 45.0%
!! TAGTGAAGTTGACTTGGAGG+AGG + tig0010124:46903-46922 Msa1347880:CDS 45.0%
! TGACTTGGAGGAGGAAGAAA+AGG + tig0010124:46912-46931 Msa1347880:CDS 45.0%
GACTTGGAGGAGGAAGAAAA+GGG + tig0010124:46913-46932 Msa1347880:CDS 45.0%
!!! GAGTTTTGGAAGCAACCAGA+TGG + tig0010124:46955-46974 Msa1347880:CDS 45.0%
!! CTTATGGTGGTTGTTTCTGG+AGG + tig0010124:47060-47079 Msa1347880:CDS 45.0%
!! TAGGATTCTTGGTGCTGCTT+TGG + tig0010124:47128-47147 Msa1347880:CDS 45.0%
TGAAACCACGCGTACATCAT+TGG - tig0010124:47644-47663 None:intergenic 45.0%
!! TGGCTTTGTCATCAAGTGTG+TGG - tig0010124:47677-47696 None:intergenic 45.0%
! ACACTTGATGACAAAGCCAG+TGG + tig0010124:47678-47697 Msa1347880:CDS 45.0%
! TTGATGACAAAGCCAGTGGA+GGG + tig0010124:47682-47701 Msa1347880:CDS 45.0%
CAACTTGGAGTGACATGAAG+AGG - tig0010124:47715-47734 None:intergenic 45.0%
CTCTTCATGTCACTCCAAGT+TGG + tig0010124:47713-47732 Msa1347880:CDS 45.0%
!!! CTCTTTTGAGATAGCGCGAA+CGG - tig0010124:47741-47760 None:intergenic 45.0%
CCTTCTCTGTTGAACTGCAA+AGG - tig0010124:47978-47997 None:intergenic 45.0%
CCTTTGCAGTTCAACAGAGA+AGG + tig0010124:47975-47994 Msa1347880:intron 45.0%
! CGAAGCTTCTGAAGATCTGA+AGG - tig0010124:48047-48066 None:intergenic 45.0%
TCTTCAGAAGCTTCGATGCA+AGG + tig0010124:48052-48071 Msa1347880:CDS 45.0%
GCGAAACCAGTTCAAGAACT+TGG + tig0010124:48182-48201 Msa1347880:CDS 45.0%
GATCTTCCTTTCAAGAGCTC+CGG - tig0010124:48356-48375 None:intergenic 45.0%
GACCAGCCATCTTTCTTTCA+TGG - tig0010124:48391-48410 None:intergenic 45.0%
GTAACATCCATGGCAGTCAA+GGG - tig0010124:48419-48438 None:intergenic 45.0%
GAGATCTTGTGGGAATAAGC+TGG - tig0010124:48579-48598 None:intergenic 45.0%
TGCTAGAATTTATTGGGCCG+GGG + tig0010124:48851-48870 Msa1347880:CDS 45.0%
!! GCAAATGGTTCTAGTTCTCC+AGG - tig0010124:48960-48979 None:intergenic 45.0%
! GTTTTCATGCCATCTCATGG+AGG + tig0010124:49035-49054 Msa1347880:CDS 45.0%
GCCATCTCATGGAGGAAATA+TGG + tig0010124:49043-49062 Msa1347880:CDS 45.0%
CCCATATTTCCTCCATGAGA+TGG - tig0010124:49047-49066 None:intergenic 45.0%
ATAGTCATACCTGAAGCGCA+TGG - tig0010124:49070-49089 None:intergenic 45.0%
TTATTCCTTCCAGGGTCACA+GGG + tig0010124:49529-49548 Msa1347880:intron 45.0%
GTTAAACTCTGCTTCAGGGA+GGG - tig0010124:49624-49643 None:intergenic 45.0%
TGTTAAACTCTGCTTCAGGG+AGG - tig0010124:49625-49644 None:intergenic 45.0%
! TGTCACGAAGTATCCTGTTC+CGG + tig0010124:49715-49734 Msa1347880:CDS 45.0%
ATCCCTCGAAAACTACTTGG+AGG + tig0010124:49874-49893 Msa1347880:three_prime_UTR 45.0%
! AGCCTCCAAGTAGTTTTCGA+GGG - tig0010124:49879-49898 None:intergenic 45.0%
! TAGCCTCCAAGTAGTTTTCG+AGG - tig0010124:49880-49899 None:intergenic 45.0%
! ACTACTTGGAGGCTACTTTC+AGG + tig0010124:49885-49904 Msa1347880:three_prime_UTR 45.0%
AGCTTAAATGTCAGCCACTC+AGG + tig0010124:49940-49959 Msa1347880:three_prime_UTR 45.0%
ATAATGCGTGTACACCTGAG+TGG - tig0010124:49957-49976 None:intergenic 45.0%
GAGGAGAGAGAGAAAGAGAG+AGG - tig0010124:46161-46180 None:intergenic 50.0%
GAGGAGGAAGAAAAGGGTGA+GGG + tig0010124:46919-46938 Msa1347880:CDS 50.0%
! TGGAAGCAACCAGATGGGTT+AGG + tig0010124:46961-46980 Msa1347880:CDS 50.0%
!! GGAAGCAACCAGATGGGTTA+GGG + tig0010124:46962-46981 Msa1347880:CDS 50.0%
GGCTTATACCCTAACCCATC+TGG - tig0010124:46973-46992 None:intergenic 50.0%
TCTTGCCAATGATGTACGCG+TGG + tig0010124:47636-47655 Msa1347880:CDS 50.0%
! CTTGATGACAAAGCCAGTGG+AGG + tig0010124:47681-47700 Msa1347880:CDS 50.0%
CTTGGAGTGACATGAAGAGG+AGG - tig0010124:47712-47731 None:intergenic 50.0%
GCTGAGAGAATGCAGAGCAA+AGG + tig0010124:48215-48234 Msa1347880:CDS 50.0%
TGGAAAAGGATGTGTGGGTG+AGG + tig0010124:48264-48283 Msa1347880:CDS 50.0%
TCAAACTCAGGACTCAGACC+AGG - tig0010124:48302-48321 None:intergenic 50.0%
GAATGAGAGGAGAGAACGAC+CGG + tig0010124:48334-48353 Msa1347880:CDS 50.0%
TCTTTGTCCCTTGACTGCCA+TGG + tig0010124:48409-48428 Msa1347880:CDS 50.0%
GGTAACATCCATGGCAGTCA+AGG - tig0010124:48420-48439 None:intergenic 50.0%
TGACTGCCATGGATGTTACC+AGG + tig0010124:48420-48439 Msa1347880:CDS 50.0%
GCTAGAATTTATTGGGCCGG+GGG + tig0010124:48852-48871 Msa1347880:CDS 50.0%
AAATATGGGCCATGCGCTTC+AGG + tig0010124:49058-49077 Msa1347880:CDS 50.0%
GTTATTCCTTCCAGGGTCAC+AGG + tig0010124:49528-49547 Msa1347880:intron 50.0%
ACCTTGCTAGTCCTGAGTTC+CGG - tig0010124:49686-49705 None:intergenic 50.0%
! GAACTCAGGACTAGCAAGGT+CGG + tig0010124:49686-49705 Msa1347880:CDS 50.0%
! AACTCAGGACTAGCAAGGTC+GGG + tig0010124:49687-49706 Msa1347880:CDS 50.0%
GGAGGAGGAAGAAAAGGGTG+AGG + tig0010124:46918-46937 Msa1347880:CDS 55.0%
CTGGAGGGATGAATCAGCAG+AGG + tig0010124:47076-47095 Msa1347880:CDS 55.0%
TAGCGCGAACGGATCCAACT+TGG - tig0010124:47730-47749 None:intergenic 55.0%
AAGGATGTGTGGGTGAGGAC+TGG + tig0010124:48269-48288 Msa1347880:CDS 55.0%
!! GTGAGGACTGGTTGTCTACC+TGG + tig0010124:48281-48300 Msa1347880:CDS 55.0%
GAACGACCGGAGCTCTTGAA+AGG + tig0010124:48347-48366 Msa1347880:CDS 55.0%
CATTAGGACAGCCGGAACTC+AGG + tig0010124:49672-49691 Msa1347880:CDS 55.0%
TTGCACATGCACTCCGGAAC+AGG - tig0010124:49731-49750 None:intergenic 55.0%
GAGTCGTTGCACATGCACTC+CGG - tig0010124:49737-49756 None:intergenic 55.0%
GTAGAGAGAGAAAGGGCGGC+GGG - tig0010124:46131-46150 None:intergenic 60.0%
GGTAGAGAGAGAAAGGGCGG+CGG - tig0010124:46132-46151 None:intergenic 60.0%
AGAGGAGGACTTCCCTCCAC+TGG - tig0010124:47697-47716 None:intergenic 60.0%
TCCACCCAATGGTTGTCCCC+CGG - tig0010124:48871-48890 None:intergenic 60.0%
ATAGGCCCTGTGACCCTGGA+AGG - tig0010124:49537-49556 None:intergenic 60.0%
! GCCGGAACTCAGGACTAGCA+AGG + tig0010124:49682-49701 Msa1347880:CDS 60.0%
! TCAGGACTAGCAAGGTCGGG+AGG + tig0010124:49690-49709 Msa1347880:CDS 60.0%
! CAGGACTAGCAAGGTCGGGA+GGG + tig0010124:49691-49710 Msa1347880:CDS 60.0%
TTGGGCCGGGGGACAACCAT+TGG + tig0010124:48863-48882 Msa1347880:CDS 65.0%
TGGGCCGGGGGACAACCATT+GGG + tig0010124:48864-48883 Msa1347880:CDS 65.0%
CTGCATAGGCCCTGTGACCC+TGG - tig0010124:49541-49560 None:intergenic 65.0%
CAGGGTCACAGGGCCTATGC+AGG + tig0010124:49539-49558 Msa1347880:intron 65.0%
GCCGGGGGACAACCATTGGG+TGG + tig0010124:48867-48886 Msa1347880:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0010124 gene 46118 50271 46118 ID=Msa1347880;Name=Msa1347880
tig0010124 mRNA 46118 50271 46118 ID=Msa1347880-mRNA-1;Parent=Msa1347880;Name=Msa1347880-mRNA-1;_AED=0.07;_eAED=0.07;_QI=234|1|1|1|1|1|6|499|623
tig0010124 exon 46118 47193 46118 ID=Msa1347880-mRNA-1:exon:6082;Parent=Msa1347880-mRNA-1
tig0010124 exon 47594 47759 47594 ID=Msa1347880-mRNA-1:exon:6083;Parent=Msa1347880-mRNA-1
tig0010124 exon 47984 48073 47984 ID=Msa1347880-mRNA-1:exon:6084;Parent=Msa1347880-mRNA-1
tig0010124 exon 48158 48441 48158 ID=Msa1347880-mRNA-1:exon:6085;Parent=Msa1347880-mRNA-1
tig0010124 exon 48821 49079 48821 ID=Msa1347880-mRNA-1:exon:6086;Parent=Msa1347880-mRNA-1
tig0010124 exon 49542 50271 49542 ID=Msa1347880-mRNA-1:exon:6087;Parent=Msa1347880-mRNA-1
tig0010124 five_prime_UTR 46118 46351 46118 ID=Msa1347880-mRNA-1:five_prime_utr;Parent=Msa1347880-mRNA-1
tig0010124 CDS 46352 47193 46352 ID=Msa1347880-mRNA-1:cds;Parent=Msa1347880-mRNA-1
tig0010124 CDS 47594 47759 47594 ID=Msa1347880-mRNA-1:cds;Parent=Msa1347880-mRNA-1
tig0010124 CDS 47984 48073 47984 ID=Msa1347880-mRNA-1:cds;Parent=Msa1347880-mRNA-1
tig0010124 CDS 48158 48441 48158 ID=Msa1347880-mRNA-1:cds;Parent=Msa1347880-mRNA-1
tig0010124 CDS 48821 49079 48821 ID=Msa1347880-mRNA-1:cds;Parent=Msa1347880-mRNA-1
tig0010124 CDS 49542 49772 49542 ID=Msa1347880-mRNA-1:cds;Parent=Msa1347880-mRNA-1
tig0010124 three_prime_UTR 49773 50271 49773 ID=Msa1347880-mRNA-1:three_prime_utr;Parent=Msa1347880-mRNA-1
Gene Sequence

>Msa1347880

ATGGCTAAGTCAAAGAACAATGCAAAGAAACTCTCATACATCTCAGTTCCTTCACAAATAATCAATTCCATTTCTTCTTCTTCTATTCAATCATTACTTGATGATCAAACACCAAAGAAATCATCAACAAAAATTGCCTCTAACTTCTTCTTCACTACCTTAACAAAATGGAAAAACCCTTCAAGATTGTTCTTCTTTTTCACACTCTTATTTCTTGGTGTTTTTGCTTTGTTTATGATTGGTTTCAATCTTAAAACACCGTTTTTTAAAACCCCATGTGCTACAAATGTTGAAAAGCCCTTAATCTCAAATGGGTTTGGTTCAAAATCTGAACTTAAGGTTGTTTCAATGAATAAAGATGAGATTTTTAATGGTGGTGTTTTGGTAAAATCTGAACTTGGGGTTGTTCAAAACCCTTCAATCTCAAATGGGTTTGATTCAAAATCTGAACTTGGTGTTGTTTCAATGAATAAAGATGAGGTTTTGAATGATGGTAGTTTGTCAAATTCACTTCCTTTGATTGGTAATGTAATGTTGCAAGCAAAGGTTCCTAGTGAAGTTGACTTGGAGGAGGAAGAAAAGGGTGAGGGAGTTGAAAAGAGTGAGTTTTGGAAGCAACCAGATGGGTTAGGGTATAAGCCTTGTTTGGATTTCAGTAGGGATTATAGAAGAGAAAGTGATGGGATTGTGAAGAATAGAAAAAGGTATCTTATGGTGGTTGTTTCTGGAGGGATGAATCAGCAGAGGAATCAAATTGTTGATGCTGTTGTTATTGCTAGGATTCTTGGTGCTGCTTTGGTTGTTCCTATTTTGCAAGTTAATGTCATTTGGGGAGATGAAAGTGAATTTGCTGATATATTTGATTTTGAGCACTTCAAGAATGTTCTTGCCAATGATGTACGCGTGGTTTCATCATTGCCATCCACACACTTGATGACAAAGCCAGTGGAGGGAAGTCCTCCTCTTCATGTCACTCCAAGTTGGATCCGTTCGCGCTATCTCAAAAGATTCAACAGAGAAGGTGTTTTGCTTTTACGCAGCTTGGATTCAAGGCTATCAAAGGATCTTCCTTCAGATCTTCAGAAGCTTCGATGCAAGGTTGCTTTTAGTGCATTGAGATTTGCGAAACCAGTTCAAGAACTTGGAAACAAGATTGCTGAGAGAATGCAGAGCAAAGGACCCTACCTTGCTCTTCATCTAAGAATGGAAAAGGATGTGTGGGTGAGGACTGGTTGTCTACCTGGTCTGAGTCCTGAGTTTGACGAGATTGTAAAGAATGAGAGGAGAGAACGACCGGAGCTCTTGAAAGGAAGATCAAACATGACTTACCATGAAAGAAAGATGGCTGGTCTTTGTCCCTTGACTGCCATGGATGTTACCAGGTTGCTTAAAGCTTTAGGAGCTCAAAAAAATGCTAGAATTTATTGGGCCGGGGGACAACCATTGGGTGGAAAAGAAGCTTTGCATCCATTAATCCATGAGTTTCCACATCTTTATAATAAGGAAGATCTTGCATTACCTGGAGAACTAGAACCATTTGCGAAGAAAGCTTCTCTAATGGCTGCCATAGATTACATAGTTTCTGAGAAGAGTGATGTTTTCATGCCATCTCATGGAGGAAATATGGGCCATGCGCTTCAGGGTCACAGGGCCTATGCAGGACACAAGAAATACATAACCCCAAACAAAAGACAAATGCATCCCTATTTTCTGAATTCTTCCCTCCCTGAAGCAGAGTTTAACAGCATTGTCAAAGAATTGCATCAGAATTCATTAGGACAGCCGGAACTCAGGACTAGCAAGGTCGGGAGGGATGTCACGAAGTATCCTGTTCCGGAGTGCATGTGCAACGACTCACATAACGATTCGTAG
Protein sequence

>Msa1347880

MAKSKNNAKKLSYISVPSQIINSISSSSIQSLLDDQTPKKSSTKIASNFFFTTLTKWKNPSRLFFFFTLLFLGVFALFMIGFNLKTPFFKTPCATNVEKPLISNGFGSKSELKVVSMNKDEIFNGGVLVKSELGVVQNPSISNGFDSKSELGVVSMNKDEVLNDGSLSNSLPLIGNVMLQAKVPSEVDLEEEEKGEGVEKSEFWKQPDGLGYKPCLDFSRDYRRESDGIVKNRKRYLMVVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESEFADIFDFEHFKNVLANDVRVVSSLPSTHLMTKPVEGSPPLHVTPSWIRSRYLKRFNREGVLLLRSLDSRLSKDLPSDLQKLRCKVAFSALRFAKPVQELGNKIAERMQSKGPYLALHLRMEKDVWVRTGCLPGLSPEFDEIVKNERRERPELLKGRSNMTYHERKMAGLCPLTAMDVTRLLKALGAQKNARIYWAGGQPLGGKEALHPLIHEFPHLYNKEDLALPGELEPFAKKASLMAAIDYIVSEKSDVFMPSHGGNMGHALQGHRAYAGHKKYITPNKRQMHPYFLNSSLPEAEFNSIVKELHQNSLGQPELRTSKVGRDVTKYPVPECMCNDSHNDS*