Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347960 | XP_003630534.1 | 98.206 | 613 | 11 | 0 | 1 | 613 | 1 | 613 | 0.0 | 1248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347960 | sp|Q9FLL1|NOB1_ARATH | 55.431 | 626 | 236 | 10 | 1 | 610 | 1 | 599 | 0.0 | 675 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347960 | G7LI13 | 98.206 | 613 | 11 | 0 | 1 | 613 | 1 | 613 | 0.0 | 1248 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0945610 | Msa1347960 | 0.945149 | 5.235415e-104 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347960 | MtrunA17_Chr8g0386641 | 98.206 | 613 | 11 | 0 | 1 | 613 | 1 | 613 | 0.0 | 1248 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347960 | AT5G41190.1 | 55.431 | 626 | 236 | 10 | 1 | 610 | 1 | 599 | 0.0 | 675 |
Find 196 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCACTCTCCGGAATTTC+TGG | 0.117528 | tig0010191:-103227 | None:intergenic |
| GTGCCGCCATTTCCGCATTT+TGG | 0.159935 | tig0010191:-104271 | None:intergenic |
| TTATAAAAGAACATGATTTA+AGG | 0.189296 | tig0010191:+105240 | Msa1347960:three_prime_UTR |
| TAACATCATGATTTGGGTTT+TGG | 0.197393 | tig0010191:+105311 | Msa1347960:three_prime_UTR |
| CCAAATGGGTTTGCGCTTGC+TGG | 0.207884 | tig0010191:+103916 | Msa1347960:CDS |
| TGAAGATAGCAGTGCAAATT+TGG | 0.219331 | tig0010191:+103703 | Msa1347960:CDS |
| ATACCTTTGTTGATGGATTC+AGG | 0.224381 | tig0010191:-102247 | None:intergenic |
| GCTTCCCACTCTTCCAAATT+AGG | 0.241820 | tig0010191:-103071 | None:intergenic |
| ATGAATGTTACCTGCGAAAT+TGG | 0.244169 | tig0010191:-101850 | None:intergenic |
| GTCAAGTTTGCTAGGGTTAC+TGG | 0.249525 | tig0010191:+102879 | Msa1347960:CDS |
| ATCTTGTTGATCTTGATTAC+TGG | 0.256732 | tig0010191:-103453 | None:intergenic |
| CCGCCGTTTATGTTTGGGTT+AGG | 0.262905 | tig0010191:-101795 | None:intergenic |
| ACATGATTAACATCATGATT+TGG | 0.263484 | tig0010191:+105304 | Msa1347960:three_prime_UTR |
| TATGTTTGGGTTAGGGTTCT+AGG | 0.267002 | tig0010191:-101787 | None:intergenic |
| GGGTTTGAATGTGCCTAATT+TGG | 0.276019 | tig0010191:+103058 | Msa1347960:CDS |
| CATCTGTATAAGATTTAGTT+TGG | 0.283524 | tig0010191:+105269 | Msa1347960:three_prime_UTR |
| GATTTAGTTTGGGTGATATA+TGG | 0.283679 | tig0010191:+105280 | Msa1347960:three_prime_UTR |
| TTCACTGTTACTGCTGAAAT+TGG | 0.291257 | tig0010191:+104235 | Msa1347960:CDS |
| GTCTGCCGCCGTTTATGTTT+GGG | 0.293151 | tig0010191:-101800 | None:intergenic |
| TTTGCAAACCGAACAGGTTT+TGG | 0.297325 | tig0010191:+102030 | Msa1347960:CDS |
| CTACTCCAGCACGATGCTTT+TGG | 0.301824 | tig0010191:-101962 | None:intergenic |
| CATTGCTCTAACTTATACTT+TGG | 0.301873 | tig0010191:+102938 | Msa1347960:CDS |
| CAGGGGTTGGTTCCATGGTT+TGG | 0.303048 | tig0010191:-102228 | None:intergenic |
| GCTGTCACTGTTAATGAAAA+TGG | 0.309540 | tig0010191:+104307 | Msa1347960:CDS |
| CTTCAGCCACCACAATTCTA+AGG | 0.325731 | tig0010191:+105048 | Msa1347960:CDS |
| CATGATTAACATCATGATTT+GGG | 0.327542 | tig0010191:+105305 | Msa1347960:three_prime_UTR |
| GGTCTGCCGCCGTTTATGTT+TGG | 0.334068 | tig0010191:-101801 | None:intergenic |
| AAAAGGGATACCTTTGTTGA+TGG | 0.338974 | tig0010191:-102254 | None:intergenic |
| CGCCGTTTATGTTTGGGTTA+GGG | 0.340178 | tig0010191:-101794 | None:intergenic |
| GTAGGACGACGACTTCTATA+TGG | 0.345158 | tig0010191:+105015 | Msa1347960:intron |
| TTAGGGTTCTAGGTGGGTTT+CGG | 0.352351 | tig0010191:-101777 | None:intergenic |
| TTCTGTCCAAAATGCGGAAA+TGG | 0.367588 | tig0010191:+104265 | Msa1347960:CDS |
| CGTGAGTAGTGATTGTCATT+TGG | 0.375242 | tig0010191:-105130 | None:intergenic |
| AAACACACAAACAACCTTGT+TGG | 0.376229 | tig0010191:-104877 | None:intergenic |
| CATCAGCAGCTTCACTTGAC+TGG | 0.379113 | tig0010191:-103787 | None:intergenic |
| GAAAGCTTATGGCGAGAAAC+AGG | 0.379986 | tig0010191:-102187 | None:intergenic |
| TGAAACTCTTCCAGAAATTC+CGG | 0.384527 | tig0010191:+103217 | Msa1347960:CDS |
| TAATCAAGATCAACAAGATA+TGG | 0.384551 | tig0010191:+103457 | Msa1347960:CDS |
| TCTACTGTGGCCTGTATAAC+TGG | 0.386129 | tig0010191:+103866 | Msa1347960:CDS |
| GCAGAATGTTCTTCTCCAAA+TGG | 0.387712 | tig0010191:+103901 | Msa1347960:CDS |
| CCAGCAAGCGCAAACCCATT+TGG | 0.393658 | tig0010191:-103916 | None:intergenic |
| GGATTCAGGGGTTGGTTCCA+TGG | 0.393846 | tig0010191:-102233 | None:intergenic |
| ACCTGTTCGGTTTGCAAAAG+TGG | 0.399390 | tig0010191:-102025 | None:intergenic |
| TGCAAAGTCACCAGTTATAC+AGG | 0.407508 | tig0010191:-103876 | None:intergenic |
| CAGAATGTTCTTCTCCAAAT+GGG | 0.409413 | tig0010191:+103902 | Msa1347960:CDS |
| TACCTTTGTTGATGGATTCA+GGG | 0.415644 | tig0010191:-102246 | None:intergenic |
| GGTTTGCGCTTGCTGGCACC+TGG | 0.419244 | tig0010191:+103923 | Msa1347960:CDS |
| TGTTTCTGTTCCCGAAGTTA+TGG | 0.420287 | tig0010191:+102150 | Msa1347960:CDS |
| ATGCTCTCCTGACGGGAGGC+TGG | 0.424797 | tig0010191:-105081 | None:intergenic |
| TGCTCTAACTTATACTTTGG+AGG | 0.431975 | tig0010191:+102941 | Msa1347960:CDS |
| TGTTAGTTGTCAAGTTTGCT+AGG | 0.431988 | tig0010191:+102871 | Msa1347960:intron |
| TTCAAGAATCCTTCCTCTGC+AGG | 0.435157 | tig0010191:+103130 | Msa1347960:CDS |
| CATCCCGGCATGTCCTTCTC+AGG | 0.436359 | tig0010191:-103035 | None:intergenic |
| TTTGGAAGAGTGGGAAGCAT+TGG | 0.442947 | tig0010191:+103076 | Msa1347960:CDS |
| ATCTGTATAAGATTTAGTTT+GGG | 0.444292 | tig0010191:+105270 | Msa1347960:three_prime_UTR |
| TTCACGGAACAAAACATCTC+AGG | 0.444574 | tig0010191:+102970 | Msa1347960:CDS |
| TCCCTTCCACCTTGAGGTAA+AGG | 0.445988 | tig0010191:-104777 | None:intergenic |
| CTCCTTTCCAGCCTCCCGTC+AGG | 0.448309 | tig0010191:+105074 | Msa1347960:CDS |
| AGGGAAGGAAAGAAAGCTTA+TGG | 0.448855 | tig0010191:-102198 | None:intergenic |
| AACCCTAACCCAAACATAAA+CGG | 0.449851 | tig0010191:+101792 | Msa1347960:five_prime_UTR |
| CATCACTTTGGTGCACATCC+AGG | 0.451839 | tig0010191:-103526 | None:intergenic |
| TTCTCATTGCCTTTACCTCA+AGG | 0.454002 | tig0010191:+104768 | Msa1347960:CDS |
| GAAGCTGGTGAAAAGCTTCA+TGG | 0.455837 | tig0010191:+102112 | Msa1347960:CDS |
| GTAACAATTACCTGTGCAAC+TGG | 0.456239 | tig0010191:-103961 | None:intergenic |
| AGCATCTTCCAAAACCTGTT+CGG | 0.462532 | tig0010191:-102038 | None:intergenic |
| TTTGGGTTAGGGTTCTAGGT+GGG | 0.464210 | tig0010191:-101783 | None:intergenic |
| TGAGAAGGACATGCCGGGAT+GGG | 0.464992 | tig0010191:+103037 | Msa1347960:CDS |
| TTGTTGATGGATTCAGGGGT+TGG | 0.465250 | tig0010191:-102241 | None:intergenic |
| TGCATGTATCATATCATCCT+TGG | 0.465343 | tig0010191:-103576 | None:intergenic |
| TTTGAGGCAGTTGATCTTCA+CGG | 0.467872 | tig0010191:-104824 | None:intergenic |
| TATTGAAAATGTTGTTTCCA+AGG | 0.469382 | tig0010191:+103559 | Msa1347960:CDS |
| CGAATCTCCTCCATAACTTC+GGG | 0.471182 | tig0010191:-102160 | None:intergenic |
| TTTACTGTTTGCACAGGAGG+TGG | 0.471720 | tig0010191:-102999 | None:intergenic |
| CAGAGGAAGGATTCTTGAAT+CGG | 0.479778 | tig0010191:-103126 | None:intergenic |
| CTGGAGTAGCGTAGTGAAGA+AGG | 0.480883 | tig0010191:+101976 | Msa1347960:CDS |
| CTCCTGACGGGAGGCTGGAA+AGG | 0.481280 | tig0010191:-105076 | None:intergenic |
| CTTCCATCGCAGGTGAATCA+TGG | 0.486952 | tig0010191:+101934 | Msa1347960:intron |
| ACTTTGGAGGCTCAGATTCA+CGG | 0.490488 | tig0010191:+102954 | Msa1347960:CDS |
| TTCAGCAGTAACAGTGAAGC+AGG | 0.491505 | tig0010191:-104230 | None:intergenic |
| GATATGGAAGAAAACATTGA+TGG | 0.491605 | tig0010191:+103473 | Msa1347960:CDS |
| ATGATGCCAGTGAGCAAAGT+TGG | 0.492731 | tig0010191:+103822 | Msa1347960:CDS |
| AAATTTGCACTGCTATCTTC+AGG | 0.493660 | tig0010191:-103701 | None:intergenic |
| GTTAGTTGTCAAGTTTGCTA+GGG | 0.494452 | tig0010191:+102872 | Msa1347960:intron |
| ACCAGCTTCAATAACAGCAT+TGG | 0.494776 | tig0010191:-102098 | None:intergenic |
| GATAAACATTGAAGGGAAGA+TGG | 0.494792 | tig0010191:+103298 | Msa1347960:CDS |
| ATCGGAATTTGCATTGTCCT+CGG | 0.495690 | tig0010191:-103108 | None:intergenic |
| GTGGATATTCAAAACTTGGC+TGG | 0.497458 | tig0010191:+105165 | Msa1347960:exon |
| AAAAGTGGTGGTTGTTGTTG+AGG | 0.498253 | tig0010191:-102010 | None:intergenic |
| CTATCTTCAGGAGACAGACT+TGG | 0.499148 | tig0010191:-103689 | None:intergenic |
| TAATCGATAATTTAAGAGTA+CGG | 0.501021 | tig0010191:+105410 | Msa1347960:three_prime_UTR |
| CACAGATACACCAGTTGCAC+AGG | 0.501209 | tig0010191:+103951 | Msa1347960:CDS |
| TAATGTAACTCGAGGTCGAC+GGG | 0.502431 | tig0010191:-104344 | None:intergenic |
| TGATCAATCTGAGGTTGGTT+CGG | 0.503635 | tig0010191:+103181 | Msa1347960:CDS |
| CTGAGAAGGACATGCCGGGA+TGG | 0.508366 | tig0010191:+103036 | Msa1347960:CDS |
| TATGCTTCTCATCATCACTT+TGG | 0.511242 | tig0010191:-103538 | None:intergenic |
| ACATTTACTGTTTGCACAGG+AGG | 0.511908 | tig0010191:-103002 | None:intergenic |
| TCCATGGTTTGGATATCAAA+GGG | 0.512366 | tig0010191:-102217 | None:intergenic |
| ACCTTTGTTGATGGATTCAG+GGG | 0.512889 | tig0010191:-102245 | None:intergenic |
| AGAGTGGGAAGCATTGGAAC+AGG | 0.513153 | tig0010191:+103082 | Msa1347960:CDS |
| TGCCTTTACCTCAAGGTGGA+AGG | 0.513861 | tig0010191:+104775 | Msa1347960:CDS |
| CTGTTACTGCTGAAATTGGA+AGG | 0.516329 | tig0010191:+104239 | Msa1347960:CDS |
| ACGAATCTCCTCCATAACTT+CGG | 0.517914 | tig0010191:-102161 | None:intergenic |
| GCCAATGCTGTTATTGAAGC+TGG | 0.519074 | tig0010191:+102097 | Msa1347960:CDS |
| GTGAAGATCAACTGCCTCAA+AGG | 0.522194 | tig0010191:+104826 | Msa1347960:CDS |
| AGTAGTGGATATTCAAAACT+TGG | 0.522912 | tig0010191:+105161 | Msa1347960:exon |
| TTCCATGGTTTGGATATCAA+AGG | 0.530246 | tig0010191:-102218 | None:intergenic |
| GTTGCTAATGCTCTCCTGAC+GGG | 0.532845 | tig0010191:-105088 | None:intergenic |
| CTGCTTCAGAGTTGCAGAGA+GGG | 0.534240 | tig0010191:-103618 | None:intergenic |
| AAAGAACATGATTTAAGGCA+TGG | 0.535216 | tig0010191:+105245 | Msa1347960:three_prime_UTR |
| GAGAAGGACATGCCGGGATG+GGG | 0.535504 | tig0010191:+103038 | Msa1347960:CDS |
| TTCACATTTACTGTTTGCAC+AGG | 0.537571 | tig0010191:-103005 | None:intergenic |
| ACTCACGCCCGCGTAAGTAG+TGG | 0.542669 | tig0010191:+105146 | Msa1347960:CDS |
| TGGTGTATCTGTGATCCTCC+AGG | 0.544263 | tig0010191:-103941 | None:intergenic |
| ACTTATGAGTAAATAGCAGA+TGG | 0.544269 | tig0010191:-105360 | None:intergenic |
| AAGCATCCAACTTTGCTCAC+TGG | 0.546095 | tig0010191:-103828 | None:intergenic |
| TGAAGATCAACTGCCTCAAA+GGG | 0.546216 | tig0010191:+104827 | Msa1347960:CDS |
| GCCTTTACCTCAAGGTGGAA+GGG | 0.547026 | tig0010191:+104776 | Msa1347960:CDS |
| TTAGGATGAAGTACCCTTTG+AGG | 0.550596 | tig0010191:-104840 | None:intergenic |
| TGTGAAGAGGTTGCCTGAGA+AGG | 0.551471 | tig0010191:+103022 | Msa1347960:CDS |
| AGATGATAAGACTTCAAACC+TGG | 0.551742 | tig0010191:+103508 | Msa1347960:CDS |
| ATCAAATCATCCAATTTCGC+AGG | 0.553684 | tig0010191:+101840 | Msa1347960:five_prime_UTR |
| AAGAACCAAAAGCATCGTGC+TGG | 0.559027 | tig0010191:+101957 | Msa1347960:CDS |
| GTTGCCTGAGAAGGACATGC+CGG | 0.561370 | tig0010191:+103031 | Msa1347960:CDS |
| CAAGATGATCAATCTGAGGT+TGG | 0.562902 | tig0010191:+103176 | Msa1347960:CDS |
| GTTTGGGTTAGGGTTCTAGG+TGG | 0.563064 | tig0010191:-101784 | None:intergenic |
| AACTCAAGTCCTGCAGAGGA+AGG | 0.563302 | tig0010191:-103139 | None:intergenic |
| TAACAGCATTAAAACTCATG+AGG | 0.565655 | tig0010191:-105386 | None:intergenic |
| GGCACATTCAAACCCCATCC+CGG | 0.567117 | tig0010191:-103050 | None:intergenic |
| AGAGCATTAGCAACTTTCAG+TGG | 0.569217 | tig0010191:+105097 | Msa1347960:CDS |
| TTACTGTTTGCACAGGAGGT+GGG | 0.570348 | tig0010191:-102998 | None:intergenic |
| TGGGTTTCGGAAGACAATGC+TGG | 0.572965 | tig0010191:-101764 | None:intergenic |
| AAGCAGATAACTCTGGAAGA+AGG | 0.573080 | tig0010191:+103635 | Msa1347960:CDS |
| GAGCATTAGCAACTTTCAGT+GGG | 0.573278 | tig0010191:+105098 | Msa1347960:CDS |
| CTGTCAGTCGTAGTACTCAC+AGG | 0.574410 | tig0010191:+103384 | Msa1347960:CDS |
| AACAGCATTAAAACTCATGA+GGG | 0.575438 | tig0010191:-105385 | None:intergenic |
| TTGATGACAATGGAGGTGAT+TGG | 0.580996 | tig0010191:+103354 | Msa1347960:CDS |
| TTGCCTGAGAAGGACATGCC+GGG | 0.581019 | tig0010191:+103032 | Msa1347960:CDS |
| TCCTCAAGATGATCAATCTG+AGG | 0.581434 | tig0010191:+103172 | Msa1347960:CDS |
| CCGCCACGTTCATCACTCTC+CGG | 0.581461 | tig0010191:-103236 | None:intergenic |
| AACTCTGAAGCAGATAACTC+TGG | 0.585499 | tig0010191:+103628 | Msa1347960:CDS |
| ATCTTTGTCTGAATCTACTG+TGG | 0.586024 | tig0010191:+103853 | Msa1347960:CDS |
| AGTTGCTAATGCTCTCCTGA+CGG | 0.586879 | tig0010191:-105089 | None:intergenic |
| TAATGAAAATGGATTAATGA+TGG | 0.587751 | tig0010191:+104318 | Msa1347960:CDS |
| GCGAAATTGGATGATTTGAT+CGG | 0.588831 | tig0010191:-101837 | None:intergenic |
| TCCCTTTGATATCCAAACCA+TGG | 0.589516 | tig0010191:+102216 | Msa1347960:CDS |
| GAGTTACATTACGTGGCACA+AGG | 0.590124 | tig0010191:+104356 | Msa1347960:CDS |
| GGTGGTTGTTGTTGAGGTGG+CGG | 0.590472 | tig0010191:-102004 | None:intergenic |
| TTCTGTTCCCGAAGTTATGG+AGG | 0.592948 | tig0010191:+102153 | Msa1347960:CDS |
| TGAGTACTACGACTGACAGC+AGG | 0.594924 | tig0010191:-103380 | None:intergenic |
| AAGGAGATCCCTTAGAATTG+TGG | 0.596504 | tig0010191:-105057 | None:intergenic |
| TTGAATATCCACTACTTACG+CGG | 0.598952 | tig0010191:-105154 | None:intergenic |
| TTGCGCTTGCTGGCACCTGG+AGG | 0.601247 | tig0010191:+103926 | Msa1347960:CDS |
| CTTATGAGTAAATAGCAGAT+GGG | 0.601501 | tig0010191:-105359 | None:intergenic |
| TTCAGCCACCACAATTCTAA+GGG | 0.601789 | tig0010191:+105049 | Msa1347960:CDS |
| GCGGAAATGGCGGCACCTTG+AGG | 0.602253 | tig0010191:+104278 | Msa1347960:CDS |
| GAAGATGCTCGTAACCGTCA+TGG | 0.602557 | tig0010191:+102052 | Msa1347960:CDS |
| AAATGGCGGCACCTTGAGGA+AGG | 0.606950 | tig0010191:+104282 | Msa1347960:CDS |
| CGACCTCGAGTTACATTACG+TGG | 0.607023 | tig0010191:+104349 | Msa1347960:CDS |
| ATGTGCCTAATTTGGAAGAG+TGG | 0.608543 | tig0010191:+103066 | Msa1347960:CDS |
| ACCTCAGATTGATCATCTTG+AGG | 0.608905 | tig0010191:-103173 | None:intergenic |
| AACAAGGAAGAAAGCCAACA+AGG | 0.609876 | tig0010191:+104863 | Msa1347960:CDS |
| TGGTTTGGATATCAAAGGGA+AGG | 0.619954 | tig0010191:-102213 | None:intergenic |
| TGTGCCTAATTTGGAAGAGT+GGG | 0.621322 | tig0010191:+103067 | Msa1347960:CDS |
| CAATGACATAGTAAATCACT+CGG | 0.621478 | tig0010191:+103754 | Msa1347960:CDS |
| TGTCCAAAATGCGGAAATGG+CGG | 0.624434 | tig0010191:+104268 | Msa1347960:CDS |
| TTGATCGGATGTGTGCGAAA+AGG | 0.625965 | tig0010191:-101822 | None:intergenic |
| CAAGGACAAGTTGATGACAA+TGG | 0.627479 | tig0010191:+103344 | Msa1347960:CDS |
| ACTGCATCCCTTCCACCTTG+AGG | 0.628249 | tig0010191:-104783 | None:intergenic |
| TTCAAACTCAAGTCCTGCAG+AGG | 0.629113 | tig0010191:-103143 | None:intergenic |
| AGTGGTGGTTGTTGTTGAGG+TGG | 0.629632 | tig0010191:-102007 | None:intergenic |
| GAAGGGAAGATGGTTGCTGA+TGG | 0.630809 | tig0010191:+103308 | Msa1347960:CDS |
| TCACGGAACAAAACATCTCA+GGG | 0.633868 | tig0010191:+102971 | Msa1347960:CDS |
| TGAATATCCACTACTTACGC+GGG | 0.635815 | tig0010191:-105153 | None:intergenic |
| GGACGACGACTTCTATATGG+TGG | 0.638637 | tig0010191:+105018 | Msa1347960:intron |
| GGGTACTTCATCCTAAAACA+AGG | 0.642784 | tig0010191:+104847 | Msa1347960:CDS |
| GATGGAATTGATGCATCTCA+AGG | 0.646560 | tig0010191:+103326 | Msa1347960:CDS |
| TGCAAACAGTAAATGTGAAG+AGG | 0.648385 | tig0010191:+103009 | Msa1347960:CDS |
| TGTTCGGTTTGCAAAAGTGG+TGG | 0.649007 | tig0010191:-102022 | None:intergenic |
| GAGATCCCTTAGAATTGTGG+TGG | 0.651673 | tig0010191:-105054 | None:intergenic |
| GCTAATGCTCTCCTGACGGG+AGG | 0.659205 | tig0010191:-105085 | None:intergenic |
| ACCCCTGAATCCATCAACAA+AGG | 0.662188 | tig0010191:+102244 | Msa1347960:CDS |
| AGTGACAGCTACCTTCCTCA+AGG | 0.664365 | tig0010191:-104293 | None:intergenic |
| GTAATGTAACTCGAGGTCGA+CGG | 0.674307 | tig0010191:-104345 | None:intergenic |
| TCATTGCCTTTACCTCAAGG+TGG | 0.675530 | tig0010191:+104771 | Msa1347960:CDS |
| GTGCCACGTAATGTAACTCG+AGG | 0.676345 | tig0010191:-104352 | None:intergenic |
| ATACATGCAGAGAACAATGA+CGG | 0.679329 | tig0010191:+103590 | Msa1347960:CDS |
| ATGAACGTGGCGGTTCAATG+AGG | 0.682906 | tig0010191:+103246 | Msa1347960:CDS |
| GGACAAGTTGATGACAATGG+AGG | 0.685424 | tig0010191:+103347 | Msa1347960:CDS |
| GAGTAGCGTAGTGAAGAAGG+AGG | 0.690050 | tig0010191:+101979 | Msa1347960:CDS |
| AGCATTGGAACAGGAAACCG+AGG | 0.692406 | tig0010191:+103091 | Msa1347960:CDS |
| TCTGCTTCAGAGTTGCAGAG+AGG | 0.697016 | tig0010191:-103619 | None:intergenic |
| AGTTACATTACGTGGCACAA+GGG | 0.712686 | tig0010191:+104357 | Msa1347960:CDS |
| CCTAACCCAAACATAAACGG+CGG | 0.717794 | tig0010191:+101795 | Msa1347960:five_prime_UTR |
| ATTCCGGAGAGTGATGAACG+TGG | 0.742400 | tig0010191:+103233 | Msa1347960:CDS |
| CCGGAGAGTGATGAACGTGG+CGG | 0.753397 | tig0010191:+103236 | Msa1347960:CDS |
| CAGCAACAGAGATACCATGA+CGG | 0.755141 | tig0010191:-102066 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAGTTAAAAAACAAAAA+GGG | - | tig0010191:102273-102292 | None:intergenic | 10.0% |
| !! | TTAAAAGTTAAAAAACAAAA+AGG | - | tig0010191:102274-102293 | None:intergenic | 10.0% |
| !!! | ATATATATGAAAGTATATTT+TGG | + | tig0010191:102810-102829 | Msa1347960:intron | 10.0% |
| !! | TTATAAAAGAACATGATTTA+AGG | + | tig0010191:105240-105259 | Msa1347960:three_prime_UTR | 15.0% |
| !!! | ATGTTTATCACTTTTTTCTT+AGG | - | tig0010191:103287-103306 | None:intergenic | 20.0% |
| !! | AAAAAAGTGATAAACATTGA+AGG | + | tig0010191:103290-103309 | Msa1347960:CDS | 20.0% |
| !! | AAAAAGTGATAAACATTGAA+GGG | + | tig0010191:103291-103310 | Msa1347960:CDS | 20.0% |
| !! | AAAATTTACTTCAAATAGCA+AGG | - | tig0010191:104024-104043 | None:intergenic | 20.0% |
| !!! | TAAATTTTTGTATGTGTGAA+GGG | + | tig0010191:104036-104055 | Msa1347960:intron | 20.0% |
| !!! | TAATGAAAATGGATTAATGA+TGG | + | tig0010191:104318-104337 | Msa1347960:CDS | 20.0% |
| !! | ATAATCATGTATCTTAAGAA+TGG | + | tig0010191:104656-104675 | Msa1347960:intron | 20.0% |
| !!! | ATTCTGTTTTTTATTGCTAT+TGG | + | tig0010191:105204-105223 | Msa1347960:three_prime_UTR | 20.0% |
| !!! | ATCTGTATAAGATTTAGTTT+GGG | + | tig0010191:105270-105289 | Msa1347960:three_prime_UTR | 20.0% |
| !! | TAATCGATAATTTAAGAGTA+CGG | + | tig0010191:105410-105429 | Msa1347960:three_prime_UTR | 20.0% |
| !!! | GTTGTTTTTATATGCCATAA+AGG | + | tig0010191:102545-102564 | Msa1347960:intron | 25.0% |
| !! | TTTTCACAAATTCTCCTTTA+TGG | - | tig0010191:102562-102581 | None:intergenic | 25.0% |
| ! | AACATAAGCAGTTATATGAA+AGG | + | tig0010191:102714-102733 | Msa1347960:intron | 25.0% |
| ! | CAGTTATATGAAAGGATAAT+CGG | + | tig0010191:102722-102741 | Msa1347960:intron | 25.0% |
| ! | ACACAAGACATTATATACTA+AGG | - | tig0010191:102775-102794 | None:intergenic | 25.0% |
| !!! | GTATATTTTGGATTCTAACT+TGG | + | tig0010191:102822-102841 | Msa1347960:intron | 25.0% |
| ! | TAATCAAGATCAACAAGATA+TGG | + | tig0010191:103457-103476 | Msa1347960:CDS | 25.0% |
| !!! | TATTGAAAATGTTGTTTCCA+AGG | + | tig0010191:103559-103578 | Msa1347960:CDS | 25.0% |
| !! | GTAAATTTTTGTATGTGTGA+AGG | + | tig0010191:104035-104054 | Msa1347960:intron | 25.0% |
| ! | TCATAGAGATTAGAAGAAAT+AGG | - | tig0010191:104122-104141 | None:intergenic | 25.0% |
| ! | TTAATTATTTGCATTCCAGA+TGG | + | tig0010191:104191-104210 | Msa1347960:intron | 25.0% |
| ! | TGAGTATATTATGAGATACT+GGG | + | tig0010191:104380-104399 | Msa1347960:intron | 25.0% |
| ! | ATAAAATGACTAGCATACTA+GGG | - | tig0010191:104432-104451 | None:intergenic | 25.0% |
| ! | TATAAAATGACTAGCATACT+AGG | - | tig0010191:104433-104452 | None:intergenic | 25.0% |
| ! | TTGTTGAATACTAGATTCAT+GGG | + | tig0010191:104492-104511 | Msa1347960:intron | 25.0% |
| ! | GATTATAATGTATTTCACAC+CGG | + | tig0010191:104554-104573 | Msa1347960:intron | 25.0% |
| !!! | AGATGTTGATTTTCATTTGT+AGG | + | tig0010191:104632-104651 | Msa1347960:intron | 25.0% |
| ! | TACTTAATAACACACTTTGT+AGG | + | tig0010191:104997-105016 | Msa1347960:intron | 25.0% |
| ! | AATAAAAAACAGAATTGAGG+GGG | - | tig0010191:105199-105218 | None:intergenic | 25.0% |
| ! | CAATAAAAAACAGAATTGAG+GGG | - | tig0010191:105200-105219 | None:intergenic | 25.0% |
| ! | GCAATAAAAAACAGAATTGA+GGG | - | tig0010191:105201-105220 | None:intergenic | 25.0% |
| ! | AGCAATAAAAAACAGAATTG+AGG | - | tig0010191:105202-105221 | None:intergenic | 25.0% |
| !!! | TGTTTTTTATTGCTATTGGA+AGG | + | tig0010191:105208-105227 | Msa1347960:three_prime_UTR | 25.0% |
| ! | CATCTGTATAAGATTTAGTT+TGG | + | tig0010191:105269-105288 | Msa1347960:three_prime_UTR | 25.0% |
| ! | ACATGATTAACATCATGATT+TGG | + | tig0010191:105304-105323 | Msa1347960:three_prime_UTR | 25.0% |
| ! | CATGATTAACATCATGATTT+GGG | + | tig0010191:105305-105324 | Msa1347960:three_prime_UTR | 25.0% |
| AATGACATTAGTACTTGTGT+AGG | + | tig0010191:102302-102321 | Msa1347960:intron | 30.0% | |
| AATAAGCTGAAAACGAGTTA+TGG | - | tig0010191:102358-102377 | None:intergenic | 30.0% | |
| !! | AGCTATTCTAAAGAGTTTTC+AGG | - | tig0010191:102381-102400 | None:intergenic | 30.0% |
| !! | CTACTGATATAAGTTTTGTG+AGG | - | tig0010191:102645-102664 | None:intergenic | 30.0% |
| CCTGTTTGGATAAATAACTT+AGG | - | tig0010191:102751-102770 | None:intergenic | 30.0% | |
| CCTAAGTTATTTATCCAAAC+AGG | + | tig0010191:102748-102767 | Msa1347960:intron | 30.0% | |
| TTATATACTAAGGTCCTGTT+TGG | - | tig0010191:102765-102784 | None:intergenic | 30.0% | |
| !!! | TTGGAACTCTTTTTTACCAT+TGG | + | tig0010191:102841-102860 | Msa1347960:intron | 30.0% |
| !!! | TGGAACTCTTTTTTACCATT+GGG | + | tig0010191:102842-102861 | Msa1347960:intron | 30.0% |
| CATTGCTCTAACTTATACTT+TGG | + | tig0010191:102938-102957 | Msa1347960:CDS | 30.0% | |
| ATCTTGTTGATCTTGATTAC+TGG | - | tig0010191:103456-103475 | None:intergenic | 30.0% | |
| GATATGGAAGAAAACATTGA+TGG | + | tig0010191:103473-103492 | Msa1347960:CDS | 30.0% | |
| CAATGACATAGTAAATCACT+CGG | + | tig0010191:103754-103773 | Msa1347960:CDS | 30.0% | |
| ATTGTTACTAGTTAGTTGCA+CGG | + | tig0010191:103976-103995 | Msa1347960:intron | 30.0% | |
| GTGAGTATATTATGAGATAC+TGG | + | tig0010191:104379-104398 | Msa1347960:intron | 30.0% | |
| TAAAATGACTAGCATACTAG+GGG | - | tig0010191:104431-104450 | None:intergenic | 30.0% | |
| GTTGTTGAATACTAGATTCA+TGG | + | tig0010191:104491-104510 | Msa1347960:intron | 30.0% | |
| TGGTTAAACCATTTACAAGA+TGG | + | tig0010191:104676-104695 | Msa1347960:intron | 30.0% | |
| GGTTAAACCATTTACAAGAT+GGG | + | tig0010191:104677-104696 | Msa1347960:intron | 30.0% | |
| ATATCATCCCATCTTGTAAA+TGG | - | tig0010191:104687-104706 | None:intergenic | 30.0% | |
| !! | AGTAGTGGATATTCAAAACT+TGG | + | tig0010191:105161-105180 | Msa1347960:exon | 30.0% |
| ! | AAAGAACATGATTTAAGGCA+TGG | + | tig0010191:105245-105264 | Msa1347960:three_prime_UTR | 30.0% |
| !! | GATTTAGTTTGGGTGATATA+TGG | + | tig0010191:105280-105299 | Msa1347960:three_prime_UTR | 30.0% |
| !! | TAACATCATGATTTGGGTTT+TGG | + | tig0010191:105311-105330 | Msa1347960:three_prime_UTR | 30.0% |
| CTTATGAGTAAATAGCAGAT+GGG | - | tig0010191:105362-105381 | None:intergenic | 30.0% | |
| ACTTATGAGTAAATAGCAGA+TGG | - | tig0010191:105363-105382 | None:intergenic | 30.0% | |
| AACAGCATTAAAACTCATGA+GGG | - | tig0010191:105388-105407 | None:intergenic | 30.0% | |
| TAACAGCATTAAAACTCATG+AGG | - | tig0010191:105389-105408 | None:intergenic | 30.0% | |
| AACCCTAACCCAAACATAAA+CGG | + | tig0010191:101792-101811 | Msa1347960:five_prime_UTR | 35.0% | |
| GCGAAATTGGATGATTTGAT+CGG | - | tig0010191:101840-101859 | None:intergenic | 35.0% | |
| ATCAAATCATCCAATTTCGC+AGG | + | tig0010191:101840-101859 | Msa1347960:five_prime_UTR | 35.0% | |
| ATGAATGTTACCTGCGAAAT+TGG | - | tig0010191:101853-101872 | None:intergenic | 35.0% | |
| ! | TCCATGGTTTGGATATCAAA+GGG | - | tig0010191:102220-102239 | None:intergenic | 35.0% |
| ! | TTCCATGGTTTGGATATCAA+AGG | - | tig0010191:102221-102240 | None:intergenic | 35.0% |
| !! | TACCTTTGTTGATGGATTCA+GGG | - | tig0010191:102249-102268 | None:intergenic | 35.0% |
| !! | ATACCTTTGTTGATGGATTC+AGG | - | tig0010191:102250-102269 | None:intergenic | 35.0% |
| AAAAGGGATACCTTTGTTGA+TGG | - | tig0010191:102257-102276 | None:intergenic | 35.0% | |
| !! | TAAGTTTTGTGAGGCTGTTT+TGG | - | tig0010191:102636-102655 | None:intergenic | 35.0% |
| !! | TTCTAAAAGTGCTTATGAGC+TGG | - | tig0010191:102693-102712 | None:intergenic | 35.0% |
| !!! | TCTTTTTTACCATTGGGATG+TGG | + | tig0010191:102848-102867 | Msa1347960:intron | 35.0% |
| ! | TGTTAGTTGTCAAGTTTGCT+AGG | + | tig0010191:102871-102890 | Msa1347960:intron | 35.0% |
| !! | GTTAGTTGTCAAGTTTGCTA+GGG | + | tig0010191:102872-102891 | Msa1347960:intron | 35.0% |
| TGCTCTAACTTATACTTTGG+AGG | + | tig0010191:102941-102960 | Msa1347960:CDS | 35.0% | |
| TTCACATTTACTGTTTGCAC+AGG | - | tig0010191:103008-103027 | None:intergenic | 35.0% | |
| TGCAAACAGTAAATGTGAAG+AGG | + | tig0010191:103009-103028 | Msa1347960:CDS | 35.0% | |
| TGAAACTCTTCCAGAAATTC+CGG | + | tig0010191:103217-103236 | Msa1347960:CDS | 35.0% | |
| GATAAACATTGAAGGGAAGA+TGG | + | tig0010191:103298-103317 | Msa1347960:CDS | 35.0% | |
| AGATGATAAGACTTCAAACC+TGG | + | tig0010191:103508-103527 | Msa1347960:CDS | 35.0% | |
| TATGCTTCTCATCATCACTT+TGG | - | tig0010191:103541-103560 | None:intergenic | 35.0% | |
| TGCATGTATCATATCATCCT+TGG | - | tig0010191:103579-103598 | None:intergenic | 35.0% | |
| ATACATGCAGAGAACAATGA+CGG | + | tig0010191:103590-103609 | Msa1347960:CDS | 35.0% | |
| AAATTTGCACTGCTATCTTC+AGG | - | tig0010191:103704-103723 | None:intergenic | 35.0% | |
| TGAAGATAGCAGTGCAAATT+TGG | + | tig0010191:103703-103722 | Msa1347960:CDS | 35.0% | |
| ATCTTTGTCTGAATCTACTG+TGG | + | tig0010191:103853-103872 | Msa1347960:CDS | 35.0% | |
| CAGAATGTTCTTCTCCAAAT+GGG | + | tig0010191:103902-103921 | Msa1347960:CDS | 35.0% | |
| TTACTTCAAATAGCAAGGAC+AGG | - | tig0010191:104019-104038 | None:intergenic | 35.0% | |
| AATAGCATATTGTGCTTCGT+AGG | - | tig0010191:104151-104170 | None:intergenic | 35.0% | |
| TTCACTGTTACTGCTGAAAT+TGG | + | tig0010191:104235-104254 | Msa1347960:CDS | 35.0% | |
| ! | AGGATTTTCTGTCCAAAATG+CGG | + | tig0010191:104259-104278 | Msa1347960:CDS | 35.0% |
| GCTGTCACTGTTAATGAAAA+TGG | + | tig0010191:104307-104326 | Msa1347960:CDS | 35.0% | |
| ATCAGATCTTATATCTCTCC+AGG | - | tig0010191:104581-104600 | None:intergenic | 35.0% | |
| CATCTATCTAAGAGAACTTG+CGG | - | tig0010191:104617-104636 | None:intergenic | 35.0% | |
| !!! | TTGGCTTTCTTCCTTGTTTT+AGG | - | tig0010191:104861-104880 | None:intergenic | 35.0% |
| AAACACACAAACAACCTTGT+TGG | - | tig0010191:104880-104899 | None:intergenic | 35.0% | |
| TTGAATATCCACTACTTACG+CGG | - | tig0010191:105157-105176 | None:intergenic | 35.0% | |
| !!! | TGGGTTTTGGTTATTTCTTC+TGG | + | tig0010191:105324-105343 | Msa1347960:three_prime_UTR | 35.0% |
| ! | TATGTTTGGGTTAGGGTTCT+AGG | - | tig0010191:101790-101809 | None:intergenic | 40.0% |
| ! | AAAAGTGGTGGTTGTTGTTG+AGG | - | tig0010191:102013-102032 | None:intergenic | 40.0% |
| ! | TTTGCAAACCGAACAGGTTT+TGG | + | tig0010191:102030-102049 | Msa1347960:CDS | 40.0% |
| AGCATCTTCCAAAACCTGTT+CGG | - | tig0010191:102041-102060 | None:intergenic | 40.0% | |
| ACCAGCTTCAATAACAGCAT+TGG | - | tig0010191:102101-102120 | None:intergenic | 40.0% | |
| ! | TGTTTCTGTTCCCGAAGTTA+TGG | + | tig0010191:102150-102169 | Msa1347960:CDS | 40.0% |
| ACGAATCTCCTCCATAACTT+CGG | - | tig0010191:102164-102183 | None:intergenic | 40.0% | |
| AGGGAAGGAAAGAAAGCTTA+TGG | - | tig0010191:102201-102220 | None:intergenic | 40.0% | |
| ! | TGGTTTGGATATCAAAGGGA+AGG | - | tig0010191:102216-102235 | None:intergenic | 40.0% |
| TCCCTTTGATATCCAAACCA+TGG | + | tig0010191:102216-102235 | Msa1347960:CDS | 40.0% | |
| !! | ACCTTTGTTGATGGATTCAG+GGG | - | tig0010191:102248-102267 | None:intergenic | 40.0% |
| ! | AAAGTGCTTATGAGCTGGTT+TGG | - | tig0010191:102688-102707 | None:intergenic | 40.0% |
| TTCACGGAACAAAACATCTC+AGG | + | tig0010191:102970-102989 | Msa1347960:CDS | 40.0% | |
| TCACGGAACAAAACATCTCA+GGG | + | tig0010191:102971-102990 | Msa1347960:CDS | 40.0% | |
| ACATTTACTGTTTGCACAGG+AGG | - | tig0010191:103005-103024 | None:intergenic | 40.0% | |
| GGGTTTGAATGTGCCTAATT+TGG | + | tig0010191:103058-103077 | Msa1347960:CDS | 40.0% | |
| ATGTGCCTAATTTGGAAGAG+TGG | + | tig0010191:103066-103085 | Msa1347960:CDS | 40.0% | |
| TGTGCCTAATTTGGAAGAGT+GGG | + | tig0010191:103067-103086 | Msa1347960:CDS | 40.0% | |
| ATCGGAATTTGCATTGTCCT+CGG | - | tig0010191:103111-103130 | None:intergenic | 40.0% | |
| CAGAGGAAGGATTCTTGAAT+CGG | - | tig0010191:103129-103148 | None:intergenic | 40.0% | |
| TCCTCAAGATGATCAATCTG+AGG | + | tig0010191:103172-103191 | Msa1347960:CDS | 40.0% | |
| ACCTCAGATTGATCATCTTG+AGG | - | tig0010191:103176-103195 | None:intergenic | 40.0% | |
| ! | CAAGATGATCAATCTGAGGT+TGG | + | tig0010191:103176-103195 | Msa1347960:CDS | 40.0% |
| ! | TGATCAATCTGAGGTTGGTT+CGG | + | tig0010191:103181-103200 | Msa1347960:CDS | 40.0% |
| GATGGAATTGATGCATCTCA+AGG | + | tig0010191:103326-103345 | Msa1347960:CDS | 40.0% | |
| !! | CAAGGACAAGTTGATGACAA+TGG | + | tig0010191:103344-103363 | Msa1347960:CDS | 40.0% |
| ! | TTGATGACAATGGAGGTGAT+TGG | + | tig0010191:103354-103373 | Msa1347960:CDS | 40.0% |
| !! | AACTCTGAAGCAGATAACTC+TGG | + | tig0010191:103628-103647 | Msa1347960:CDS | 40.0% |
| ! | AAGCAGATAACTCTGGAAGA+AGG | + | tig0010191:103635-103654 | Msa1347960:CDS | 40.0% |
| TGCAAAGTCACCAGTTATAC+AGG | - | tig0010191:103879-103898 | None:intergenic | 40.0% | |
| GCAGAATGTTCTTCTCCAAA+TGG | + | tig0010191:103901-103920 | Msa1347960:CDS | 40.0% | |
| GTAACAATTACCTGTGCAAC+TGG | - | tig0010191:103964-103983 | None:intergenic | 40.0% | |
| ATGACACTTGAGTATCCATC+TGG | - | tig0010191:104209-104228 | None:intergenic | 40.0% | |
| CTGTTACTGCTGAAATTGGA+AGG | + | tig0010191:104239-104258 | Msa1347960:CDS | 40.0% | |
| TTCTGTCCAAAATGCGGAAA+TGG | + | tig0010191:104265-104284 | Msa1347960:CDS | 40.0% | |
| AGTTACATTACGTGGCACAA+GGG | + | tig0010191:104357-104376 | Msa1347960:CDS | 40.0% | |
| AACGAGTTCTTTCAGTCACT+TGG | + | tig0010191:104457-104476 | Msa1347960:intron | 40.0% | |
| ATCTTATATCTCTCCAGGAC+CGG | - | tig0010191:104576-104595 | None:intergenic | 40.0% | |
| TTCTCATTGCCTTTACCTCA+AGG | + | tig0010191:104768-104787 | Msa1347960:CDS | 40.0% | |
| ! | TTTGAGGCAGTTGATCTTCA+CGG | - | tig0010191:104827-104846 | None:intergenic | 40.0% |
| TGAAGATCAACTGCCTCAAA+GGG | + | tig0010191:104827-104846 | Msa1347960:CDS | 40.0% | |
| ! | TTAGGATGAAGTACCCTTTG+AGG | - | tig0010191:104843-104862 | None:intergenic | 40.0% |
| GGGTACTTCATCCTAAAACA+AGG | + | tig0010191:104847-104866 | Msa1347960:CDS | 40.0% | |
| AACAAGGAAGAAAGCCAACA+AGG | + | tig0010191:104863-104882 | Msa1347960:CDS | 40.0% | |
| TTCAGCCACCACAATTCTAA+GGG | + | tig0010191:105049-105068 | Msa1347960:CDS | 40.0% | |
| AAGGAGATCCCTTAGAATTG+TGG | - | tig0010191:105060-105079 | None:intergenic | 40.0% | |
| ! | AGAGCATTAGCAACTTTCAG+TGG | + | tig0010191:105097-105116 | Msa1347960:CDS | 40.0% |
| GAGCATTAGCAACTTTCAGT+GGG | + | tig0010191:105098-105117 | Msa1347960:CDS | 40.0% | |
| CGTGAGTAGTGATTGTCATT+TGG | - | tig0010191:105133-105152 | None:intergenic | 40.0% | |
| TGAATATCCACTACTTACGC+GGG | - | tig0010191:105156-105175 | None:intergenic | 40.0% | |
| GTGGATATTCAAAACTTGGC+TGG | + | tig0010191:105165-105184 | Msa1347960:exon | 40.0% | |
| !! | TTAGGGTTCTAGGTGGGTTT+CGG | - | tig0010191:101780-101799 | None:intergenic | 45.0% |
| !! | TTTGGGTTAGGGTTCTAGGT+GGG | - | tig0010191:101786-101805 | None:intergenic | 45.0% |
| ! | CGCCGTTTATGTTTGGGTTA+GGG | - | tig0010191:101797-101816 | None:intergenic | 45.0% |
| CCTAACCCAAACATAAACGG+CGG | + | tig0010191:101795-101814 | Msa1347960:five_prime_UTR | 45.0% | |
| TTGATCGGATGTGTGCGAAA+AGG | - | tig0010191:101825-101844 | None:intergenic | 45.0% | |
| !! | AAGAACCAAAAGCATCGTGC+TGG | + | tig0010191:101957-101976 | Msa1347960:CDS | 45.0% |
| ! | TGTTCGGTTTGCAAAAGTGG+TGG | - | tig0010191:102025-102044 | None:intergenic | 45.0% |
| !! | ACCACTTTTGCAAACCGAAC+AGG | + | tig0010191:102024-102043 | Msa1347960:CDS | 45.0% |
| ! | ACCTGTTCGGTTTGCAAAAG+TGG | - | tig0010191:102028-102047 | None:intergenic | 45.0% |
| CAGCAACAGAGATACCATGA+CGG | - | tig0010191:102069-102088 | None:intergenic | 45.0% | |
| GCCAATGCTGTTATTGAAGC+TGG | + | tig0010191:102097-102116 | Msa1347960:CDS | 45.0% | |
| GAAGCTGGTGAAAAGCTTCA+TGG | + | tig0010191:102112-102131 | Msa1347960:CDS | 45.0% | |
| TTCTGTTCCCGAAGTTATGG+AGG | + | tig0010191:102153-102172 | Msa1347960:CDS | 45.0% | |
| CGAATCTCCTCCATAACTTC+GGG | - | tig0010191:102163-102182 | None:intergenic | 45.0% | |
| GAAAGCTTATGGCGAGAAAC+AGG | - | tig0010191:102190-102209 | None:intergenic | 45.0% | |
| !! | TTGTTGATGGATTCAGGGGT+TGG | - | tig0010191:102244-102263 | None:intergenic | 45.0% |
| ACCCCTGAATCCATCAACAA+AGG | + | tig0010191:102244-102263 | Msa1347960:CDS | 45.0% | |
| !! | GCTTATGAGCTGGTTTGGAT+TGG | - | tig0010191:102683-102702 | None:intergenic | 45.0% |
| CAACTAACACCACATCCCAA+TGG | - | tig0010191:102860-102879 | None:intergenic | 45.0% | |
| !! | GTCAAGTTTGCTAGGGTTAC+TGG | + | tig0010191:102879-102898 | Msa1347960:CDS | 45.0% |
| ! | ACTTTGGAGGCTCAGATTCA+CGG | + | tig0010191:102954-102973 | Msa1347960:CDS | 45.0% |
| TTACTGTTTGCACAGGAGGT+GGG | - | tig0010191:103001-103020 | None:intergenic | 45.0% | |
| TTTACTGTTTGCACAGGAGG+TGG | - | tig0010191:103002-103021 | None:intergenic | 45.0% | |
| GCTTCCCACTCTTCCAAATT+AGG | - | tig0010191:103074-103093 | None:intergenic | 45.0% | |
| ! | TTTGGAAGAGTGGGAAGCAT+TGG | + | tig0010191:103076-103095 | Msa1347960:CDS | 45.0% |
| TTCAAGAATCCTTCCTCTGC+AGG | + | tig0010191:103130-103149 | Msa1347960:CDS | 45.0% | |
| TTCAAACTCAAGTCCTGCAG+AGG | - | tig0010191:103146-103165 | None:intergenic | 45.0% | |
| TCATCACTCTCCGGAATTTC+TGG | - | tig0010191:103230-103249 | None:intergenic | 45.0% | |
| !! | GGACAAGTTGATGACAATGG+AGG | + | tig0010191:103347-103366 | Msa1347960:CDS | 45.0% |
| CTATCTTCAGGAGACAGACT+TGG | - | tig0010191:103692-103711 | None:intergenic | 45.0% | |
| ATGATGCCAGTGAGCAAAGT+TGG | + | tig0010191:103822-103841 | Msa1347960:CDS | 45.0% | |
| AAGCATCCAACTTTGCTCAC+TGG | - | tig0010191:103831-103850 | None:intergenic | 45.0% | |
| TCTACTGTGGCCTGTATAAC+TGG | + | tig0010191:103866-103885 | Msa1347960:CDS | 45.0% | |
| TTCAGCAGTAACAGTGAAGC+AGG | - | tig0010191:104233-104252 | None:intergenic | 45.0% | |
| TGTCCAAAATGCGGAAATGG+CGG | + | tig0010191:104268-104287 | Msa1347960:CDS | 45.0% | |
| TAATGTAACTCGAGGTCGAC+GGG | - | tig0010191:104347-104366 | None:intergenic | 45.0% | |
| GTAATGTAACTCGAGGTCGA+CGG | - | tig0010191:104348-104367 | None:intergenic | 45.0% | |
| GAGTTACATTACGTGGCACA+AGG | + | tig0010191:104356-104375 | Msa1347960:CDS | 45.0% | |
| AATGTATTTCACACCGGTCC+TGG | + | tig0010191:104560-104579 | Msa1347960:intron | 45.0% | |
| TCATTGCCTTTACCTCAAGG+TGG | + | tig0010191:104771-104790 | Msa1347960:CDS | 45.0% | |
| GTGAAGATCAACTGCCTCAA+AGG | + | tig0010191:104826-104845 | Msa1347960:CDS | 45.0% | |
| AAAGAACACCACACTCTCGT+GGG | - | tig0010191:104930-104949 | None:intergenic | 45.0% | |
| TAAAGAACACCACACTCTCG+TGG | - | tig0010191:104931-104950 | None:intergenic | 45.0% | |
| GTAGGACGACGACTTCTATA+TGG | + | tig0010191:105015-105034 | Msa1347960:intron | 45.0% | |
| CTTCAGCCACCACAATTCTA+AGG | + | tig0010191:105048-105067 | Msa1347960:CDS | 45.0% | |
| GAGATCCCTTAGAATTGTGG+TGG | - | tig0010191:105057-105076 | None:intergenic | 45.0% | |
| AGTTGCTAATGCTCTCCTGA+CGG | - | tig0010191:105092-105111 | None:intergenic | 45.0% | |
| !! | TTTATTTATTAATTAATGTT+TGG | + | tig0010191:102433-102452 | Msa1347960:intron | 5.0% |
| !! | TAATTAATAAATAATAGATT+TGG | + | tig0010191:104525-104544 | Msa1347960:intron | 5.0% |
| !! | GTTTGGGTTAGGGTTCTAGG+TGG | - | tig0010191:101787-101806 | None:intergenic | 50.0% |
| ! | CCGCCGTTTATGTTTGGGTT+AGG | - | tig0010191:101798-101817 | None:intergenic | 50.0% |
| GTCTGCCGCCGTTTATGTTT+GGG | - | tig0010191:101803-101822 | None:intergenic | 50.0% | |
| ACAGACAGATCTTCCATCGC+AGG | + | tig0010191:101924-101943 | Msa1347960:intron | 50.0% | |
| CTTCCATCGCAGGTGAATCA+TGG | + | tig0010191:101934-101953 | Msa1347960:intron | 50.0% | |
| CTTCCATGATTCACCTGCGA+TGG | - | tig0010191:101940-101959 | None:intergenic | 50.0% | |
| ! | CTACTCCAGCACGATGCTTT+TGG | - | tig0010191:101965-101984 | None:intergenic | 50.0% |
| CTGGAGTAGCGTAGTGAAGA+AGG | + | tig0010191:101976-101995 | Msa1347960:CDS | 50.0% | |
| GAGTAGCGTAGTGAAGAAGG+AGG | + | tig0010191:101979-101998 | Msa1347960:CDS | 50.0% | |
| ! | AGTGGTGGTTGTTGTTGAGG+TGG | - | tig0010191:102010-102029 | None:intergenic | 50.0% |
| GAAGATGCTCGTAACCGTCA+TGG | + | tig0010191:102052-102071 | Msa1347960:CDS | 50.0% | |
| TGTGAAGAGGTTGCCTGAGA+AGG | + | tig0010191:103022-103041 | Msa1347960:CDS | 50.0% | |
| !! | AGAGTGGGAAGCATTGGAAC+AGG | + | tig0010191:103082-103101 | Msa1347960:CDS | 50.0% |
| ! | AGCATTGGAACAGGAAACCG+AGG | + | tig0010191:103091-103110 | Msa1347960:CDS | 50.0% |
| AACTCAAGTCCTGCAGAGGA+AGG | - | tig0010191:103142-103161 | None:intergenic | 50.0% | |
| ATTCCGGAGAGTGATGAACG+TGG | + | tig0010191:103233-103252 | Msa1347960:CDS | 50.0% | |
| ATGAACGTGGCGGTTCAATG+AGG | + | tig0010191:103246-103265 | Msa1347960:CDS | 50.0% | |
| GAAGGGAAGATGGTTGCTGA+TGG | + | tig0010191:103308-103327 | Msa1347960:CDS | 50.0% | |
| TGAGTACTACGACTGACAGC+AGG | - | tig0010191:103383-103402 | None:intergenic | 50.0% | |
| CTGTCAGTCGTAGTACTCAC+AGG | + | tig0010191:103384-103403 | Msa1347960:CDS | 50.0% | |
| ! | CATCACTTTGGTGCACATCC+AGG | - | tig0010191:103529-103548 | None:intergenic | 50.0% |
| CTGCTTCAGAGTTGCAGAGA+GGG | - | tig0010191:103621-103640 | None:intergenic | 50.0% | |
| TCTGCTTCAGAGTTGCAGAG+AGG | - | tig0010191:103622-103641 | None:intergenic | 50.0% | |
| CATCAGCAGCTTCACTTGAC+TGG | - | tig0010191:103790-103809 | None:intergenic | 50.0% | |
| TGGTGTATCTGTGATCCTCC+AGG | - | tig0010191:103944-103963 | None:intergenic | 50.0% | |
| CACAGATACACCAGTTGCAC+AGG | + | tig0010191:103951-103970 | Msa1347960:CDS | 50.0% | |
| AGTGACAGCTACCTTCCTCA+AGG | - | tig0010191:104296-104315 | None:intergenic | 50.0% | |
| CGACCTCGAGTTACATTACG+TGG | + | tig0010191:104349-104368 | Msa1347960:CDS | 50.0% | |
| GTGCCACGTAATGTAACTCG+AGG | - | tig0010191:104355-104374 | None:intergenic | 50.0% | |
| TGCCTTTACCTCAAGGTGGA+AGG | + | tig0010191:104775-104794 | Msa1347960:CDS | 50.0% | |
| GCCTTTACCTCAAGGTGGAA+GGG | + | tig0010191:104776-104795 | Msa1347960:CDS | 50.0% | |
| TCCCTTCCACCTTGAGGTAA+AGG | - | tig0010191:104780-104799 | None:intergenic | 50.0% | |
| GGACGACGACTTCTATATGG+TGG | + | tig0010191:105018-105037 | Msa1347960:intron | 50.0% | |
| GTTGCTAATGCTCTCCTGAC+GGG | - | tig0010191:105091-105110 | None:intergenic | 50.0% | |
| GGTCTGCCGCCGTTTATGTT+TGG | - | tig0010191:101804-101823 | None:intergenic | 55.0% | |
| ! | GGTGGTTGTTGTTGAGGTGG+CGG | - | tig0010191:102007-102026 | None:intergenic | 55.0% |
| !! | CAGGGGTTGGTTCCATGGTT+TGG | - | tig0010191:102231-102250 | None:intergenic | 55.0% |
| !! | GGATTCAGGGGTTGGTTCCA+TGG | - | tig0010191:102236-102255 | None:intergenic | 55.0% |
| GTTGCCTGAGAAGGACATGC+CGG | + | tig0010191:103031-103050 | Msa1347960:CDS | 55.0% | |
| TTGCCTGAGAAGGACATGCC+GGG | + | tig0010191:103032-103051 | Msa1347960:CDS | 55.0% | |
| TGAGAAGGACATGCCGGGAT+GGG | + | tig0010191:103037-103056 | Msa1347960:CDS | 55.0% | |
| GGCACATTCAAACCCCATCC+CGG | - | tig0010191:103053-103072 | None:intergenic | 55.0% | |
| CCAGCAAGCGCAAACCCATT+TGG | - | tig0010191:103919-103938 | None:intergenic | 55.0% | |
| ! | CCAAATGGGTTTGCGCTTGC+TGG | + | tig0010191:103916-103935 | Msa1347960:CDS | 55.0% |
| ! | GTGCCGCCATTTCCGCATTT+TGG | - | tig0010191:104274-104293 | None:intergenic | 55.0% |
| AAATGGCGGCACCTTGAGGA+AGG | + | tig0010191:104282-104301 | Msa1347960:CDS | 55.0% | |
| ACTGCATCCCTTCCACCTTG+AGG | - | tig0010191:104786-104805 | None:intergenic | 55.0% | |
| GTTCGTTTCCCACGAGAGTG+TGG | + | tig0010191:104919-104938 | Msa1347960:intron | 55.0% | |
| CATCCCGGCATGTCCTTCTC+AGG | - | tig0010191:103038-103057 | None:intergenic | 60.0% | |
| CTGAGAAGGACATGCCGGGA+TGG | + | tig0010191:103036-103055 | Msa1347960:CDS | 60.0% | |
| GAGAAGGACATGCCGGGATG+GGG | + | tig0010191:103038-103057 | Msa1347960:CDS | 60.0% | |
| CCGCCACGTTCATCACTCTC+CGG | - | tig0010191:103239-103258 | None:intergenic | 60.0% | |
| CCGGAGAGTGATGAACGTGG+CGG | + | tig0010191:103236-103255 | Msa1347960:CDS | 60.0% | |
| GCTAATGCTCTCCTGACGGG+AGG | - | tig0010191:105088-105107 | None:intergenic | 60.0% | |
| ACTCACGCCCGCGTAAGTAG+TGG | + | tig0010191:105146-105165 | Msa1347960:CDS | 60.0% | |
| ! | GGTTTGCGCTTGCTGGCACC+TGG | + | tig0010191:103923-103942 | Msa1347960:CDS | 65.0% |
| ! | TTGCGCTTGCTGGCACCTGG+AGG | + | tig0010191:103926-103945 | Msa1347960:CDS | 65.0% |
| GCGGAAATGGCGGCACCTTG+AGG | + | tig0010191:104278-104297 | Msa1347960:CDS | 65.0% | |
| CTCCTTTCCAGCCTCCCGTC+AGG | + | tig0010191:105074-105093 | Msa1347960:CDS | 65.0% | |
| CTCCTGACGGGAGGCTGGAA+AGG | - | tig0010191:105079-105098 | None:intergenic | 65.0% | |
| ATGCTCTCCTGACGGGAGGC+TGG | - | tig0010191:105084-105103 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0010191 | gene | 101765 | 105450 | 101765 | ID=Msa1347960;Name=Msa1347960 |
| tig0010191 | mRNA | 101765 | 105450 | 101765 | ID=Msa1347960-mRNA-1;Parent=Msa1347960;Name=Msa1347960-mRNA-1;_AED=0.04;_eAED=0.04;_QI=104|1|1|1|0.8|0.66|6|285|613 |
| tig0010191 | exon | 101765 | 101861 | 101765 | ID=Msa1347960-mRNA-1:exon:6127;Parent=Msa1347960-mRNA-1 |
| tig0010191 | exon | 101946 | 102265 | 101946 | ID=Msa1347960-mRNA-1:exon:6128;Parent=Msa1347960-mRNA-1 |
| tig0010191 | exon | 102877 | 103972 | 102877 | ID=Msa1347960-mRNA-1:exon:6129;Parent=Msa1347960-mRNA-1 |
| tig0010191 | exon | 104210 | 104378 | 104210 | ID=Msa1347960-mRNA-1:exon:6130;Parent=Msa1347960-mRNA-1 |
| tig0010191 | exon | 104768 | 104884 | 104768 | ID=Msa1347960-mRNA-1:exon:6131;Parent=Msa1347960-mRNA-1 |
| tig0010191 | exon | 105019 | 105450 | 105019 | ID=Msa1347960-mRNA-1:exon:6132;Parent=Msa1347960-mRNA-1 |
| tig0010191 | five_prime_UTR | 101765 | 101861 | 101765 | ID=Msa1347960-mRNA-1:five_prime_utr;Parent=Msa1347960-mRNA-1 |
| tig0010191 | five_prime_UTR | 101946 | 101952 | 101946 | ID=Msa1347960-mRNA-1:five_prime_utr;Parent=Msa1347960-mRNA-1 |
| tig0010191 | CDS | 101953 | 102265 | 101953 | ID=Msa1347960-mRNA-1:cds;Parent=Msa1347960-mRNA-1 |
| tig0010191 | CDS | 102877 | 103972 | 102877 | ID=Msa1347960-mRNA-1:cds;Parent=Msa1347960-mRNA-1 |
| tig0010191 | CDS | 104210 | 104378 | 104210 | ID=Msa1347960-mRNA-1:cds;Parent=Msa1347960-mRNA-1 |
| tig0010191 | CDS | 104768 | 104884 | 104768 | ID=Msa1347960-mRNA-1:cds;Parent=Msa1347960-mRNA-1 |
| tig0010191 | CDS | 105019 | 105165 | 105019 | ID=Msa1347960-mRNA-1:cds;Parent=Msa1347960-mRNA-1 |
| tig0010191 | three_prime_UTR | 105166 | 105450 | 105166 | ID=Msa1347960-mRNA-1:three_prime_utr;Parent=Msa1347960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
