Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0945610 | XP_003630534.1 | 97.839 | 509 | 11 | 0 | 1 | 509 | 105 | 613 | 0.0 | 1035 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0945610 | sp|Q9FLL1|NOB1_ARATH | 56.538 | 520 | 185 | 9 | 1 | 506 | 107 | 599 | 0.0 | 572 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0637930 | Msa0945610 | -0.812561 | 3.985138e-51 | -8.615850e-47 |
Msa0642160 | Msa0945610 | 0.818069 | 2.376348e-52 | -8.615850e-47 |
Msa0421500 | Msa0945610 | 0.804255 | 2.358275e-49 | -8.615850e-47 |
Msa0945610 | Msa1347960 | 0.945149 | 5.235415e-104 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0945610 | MtrunA17_Chr8g0386641 | 97.839 | 509 | 11 | 0 | 1 | 509 | 105 | 613 | 0.0 | 1035 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0945610 | AT5G41190.1 | 56.538 | 520 | 185 | 9 | 1 | 506 | 107 | 599 | 0.0 | 572 |
Find 146 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATCACTCTCCGGAATTTC+TGG | 0.117528 | 6_3:-24404764 | None:intergenic |
GTGCCGCCATTTCCGCATTT+TGG | 0.159935 | 6_3:-24405808 | None:intergenic |
TTATAAAAGAACATGATTTA+AGG | 0.189296 | 6_3:+24406777 | Msa0945610:three_prime_UTR |
TAACATCATGATTTGGGTTT+TGG | 0.197393 | 6_3:+24406848 | Msa0945610:three_prime_UTR |
CCAAATGGGTTTGCGCTTGC+TGG | 0.207884 | 6_3:+24405453 | Msa0945610:CDS |
TGAAGATAGCAGTGCAAATT+TGG | 0.219331 | 6_3:+24405240 | Msa0945610:CDS |
GCTTCCCACTCTTCCAAATT+AGG | 0.241820 | 6_3:-24404608 | None:intergenic |
GTCAAGTTTGCTAGGGTTAC+TGG | 0.249525 | 6_3:+24404416 | Msa0945610:CDS |
ATCTTGTTGATCTTGATTAC+TGG | 0.256732 | 6_3:-24404990 | None:intergenic |
ACATGATTAACATCATGATT+TGG | 0.263484 | 6_3:+24406841 | Msa0945610:three_prime_UTR |
GGGTTTGAATGTGCCTAATT+TGG | 0.276019 | 6_3:+24404595 | Msa0945610:CDS |
CATCTGTATAAGATTTAGTT+TGG | 0.283524 | 6_3:+24406806 | Msa0945610:three_prime_UTR |
GATTTAGTTTGGGTGATATA+TGG | 0.283679 | 6_3:+24406817 | Msa0945610:three_prime_UTR |
TTCACTGTTACTGCTGAAAT+TGG | 0.291257 | 6_3:+24405772 | Msa0945610:CDS |
CATTGCTCTAACTTATACTT+TGG | 0.301873 | 6_3:+24404475 | Msa0945610:CDS |
GCTGTCACTGTTAATGAAAA+TGG | 0.309540 | 6_3:+24405844 | Msa0945610:CDS |
CTTCAGCCACCACAATTCTA+AGG | 0.325731 | 6_3:+24406585 | Msa0945610:CDS |
CATGATTAACATCATGATTT+GGG | 0.327542 | 6_3:+24406842 | Msa0945610:three_prime_UTR |
GTAGGACGACGACTTCTATA+TGG | 0.345158 | 6_3:+24406552 | Msa0945610:intron |
TTCTGTCCAAAATGCGGAAA+TGG | 0.367588 | 6_3:+24405802 | Msa0945610:CDS |
CGTGAGTAGTGATTGTCATT+TGG | 0.375242 | 6_3:-24406667 | None:intergenic |
AAACACACAAACAACCTTGT+TGG | 0.376229 | 6_3:-24406414 | None:intergenic |
CATCAGCAGCTTCACTTGAC+TGG | 0.379113 | 6_3:-24405324 | None:intergenic |
TGAAACTCTTCCAGAAATTC+CGG | 0.384527 | 6_3:+24404754 | Msa0945610:CDS |
TAATCAAGATCAACAAGATA+TGG | 0.384551 | 6_3:+24404994 | Msa0945610:CDS |
TCTACTGTGGCCTGTATAAC+TGG | 0.386129 | 6_3:+24405403 | Msa0945610:CDS |
GCAGAATGTTCTTCTCCAAA+TGG | 0.387712 | 6_3:+24405438 | Msa0945610:CDS |
CCAGCAAGCGCAAACCCATT+TGG | 0.393658 | 6_3:-24405453 | None:intergenic |
TGCAAAGTCACCAGTTATAC+AGG | 0.407508 | 6_3:-24405413 | None:intergenic |
CAGAATGTTCTTCTCCAAAT+GGG | 0.409413 | 6_3:+24405439 | Msa0945610:CDS |
GGTTTGCGCTTGCTGGCACC+TGG | 0.419244 | 6_3:+24405460 | Msa0945610:CDS |
ATGCTCTCCTGACGGGAGGC+TGG | 0.424797 | 6_3:-24406618 | None:intergenic |
TGCTCTAACTTATACTTTGG+AGG | 0.431975 | 6_3:+24404478 | Msa0945610:CDS |
TGTTAGTTGTCAAGTTTGCT+AGG | 0.431988 | 6_3:+24404408 | None:intergenic |
TTCAAGAATCCTTCCTCTGC+AGG | 0.435157 | 6_3:+24404667 | Msa0945610:CDS |
CATCCCGGCATGTCCTTCTC+AGG | 0.436359 | 6_3:-24404572 | None:intergenic |
TTTGGAAGAGTGGGAAGCAT+TGG | 0.442947 | 6_3:+24404613 | Msa0945610:CDS |
ATCTGTATAAGATTTAGTTT+GGG | 0.444292 | 6_3:+24406807 | Msa0945610:three_prime_UTR |
TTCACGGAACAAAACATCTC+AGG | 0.444574 | 6_3:+24404507 | Msa0945610:CDS |
TCCCTTCCACCTTGAGGTAA+AGG | 0.445988 | 6_3:-24406314 | None:intergenic |
CTCCTTTCCAGCCTCCCGTC+AGG | 0.448309 | 6_3:+24406611 | Msa0945610:CDS |
CATCACTTTGGTGCACATCC+AGG | 0.451839 | 6_3:-24405063 | None:intergenic |
TTCTCATTGCCTTTACCTCA+AGG | 0.454002 | 6_3:+24406305 | Msa0945610:CDS |
GTAACAATTACCTGTGCAAC+TGG | 0.456239 | 6_3:-24405498 | None:intergenic |
TGAGAAGGACATGCCGGGAT+GGG | 0.464992 | 6_3:+24404574 | Msa0945610:CDS |
TGCATGTATCATATCATCCT+TGG | 0.465343 | 6_3:-24405113 | None:intergenic |
TTTGAGGCAGTTGATCTTCA+CGG | 0.467872 | 6_3:-24406361 | None:intergenic |
TATTGAAAATGTTGTTTCCA+AGG | 0.469382 | 6_3:+24405096 | Msa0945610:CDS |
TTTACTGTTTGCACAGGAGG+TGG | 0.471720 | 6_3:-24404536 | None:intergenic |
CAGAGGAAGGATTCTTGAAT+CGG | 0.479778 | 6_3:-24404663 | None:intergenic |
CTCCTGACGGGAGGCTGGAA+AGG | 0.481280 | 6_3:-24406613 | None:intergenic |
ACTTTGGAGGCTCAGATTCA+CGG | 0.490488 | 6_3:+24404491 | Msa0945610:CDS |
TTCAGCAGTAACAGTGAAGC+AGG | 0.491505 | 6_3:-24405767 | None:intergenic |
GATATGGAAGAAAACATTGA+TGG | 0.491605 | 6_3:+24405010 | Msa0945610:CDS |
ATGATGCCAGTGAGCAAAGT+TGG | 0.492731 | 6_3:+24405359 | Msa0945610:CDS |
AAATTTGCACTGCTATCTTC+AGG | 0.493660 | 6_3:-24405238 | None:intergenic |
GTTAGTTGTCAAGTTTGCTA+GGG | 0.494452 | 6_3:+24404409 | None:intergenic |
GATAAACATTGAAGGGAAGA+TGG | 0.494792 | 6_3:+24404835 | Msa0945610:CDS |
ATCGGAATTTGCATTGTCCT+CGG | 0.495690 | 6_3:-24404645 | None:intergenic |
GTGGATATTCAAAACTTGGC+TGG | 0.497458 | 6_3:+24406702 | Msa0945610:exon |
CTATCTTCAGGAGACAGACT+TGG | 0.499148 | 6_3:-24405226 | None:intergenic |
TAATCGATAATTTAAGAGTA+CGG | 0.501021 | 6_3:+24406947 | Msa0945610:three_prime_UTR |
CACAGATACACCAGTTGCAC+AGG | 0.501209 | 6_3:+24405488 | Msa0945610:CDS |
TAATGTAACTCGAGGTCGAC+GGG | 0.502431 | 6_3:-24405881 | None:intergenic |
TGATCAATCTGAGGTTGGTT+CGG | 0.503635 | 6_3:+24404718 | Msa0945610:CDS |
CTGAGAAGGACATGCCGGGA+TGG | 0.508366 | 6_3:+24404573 | Msa0945610:CDS |
TATGCTTCTCATCATCACTT+TGG | 0.511242 | 6_3:-24405075 | None:intergenic |
ACATTTACTGTTTGCACAGG+AGG | 0.511908 | 6_3:-24404539 | None:intergenic |
AGAGTGGGAAGCATTGGAAC+AGG | 0.513153 | 6_3:+24404619 | Msa0945610:CDS |
TGCCTTTACCTCAAGGTGGA+AGG | 0.513861 | 6_3:+24406312 | Msa0945610:CDS |
CTGTTACTGCTGAAATTGGA+AGG | 0.516329 | 6_3:+24405776 | Msa0945610:CDS |
GTGAAGATCAACTGCCTCAA+AGG | 0.522194 | 6_3:+24406363 | Msa0945610:CDS |
AGTAGTGGATATTCAAAACT+TGG | 0.522912 | 6_3:+24406698 | Msa0945610:exon |
GTTGCTAATGCTCTCCTGAC+GGG | 0.532845 | 6_3:-24406625 | None:intergenic |
CTGCTTCAGAGTTGCAGAGA+GGG | 0.534240 | 6_3:-24405155 | None:intergenic |
AAAGAACATGATTTAAGGCA+TGG | 0.535216 | 6_3:+24406782 | Msa0945610:three_prime_UTR |
GAGAAGGACATGCCGGGATG+GGG | 0.535504 | 6_3:+24404575 | Msa0945610:CDS |
TTCACATTTACTGTTTGCAC+AGG | 0.537571 | 6_3:-24404542 | None:intergenic |
ACTCACGCCCGCGTAAGTAG+TGG | 0.542669 | 6_3:+24406683 | Msa0945610:CDS |
TGGTGTATCTGTGATCCTCC+AGG | 0.544263 | 6_3:-24405478 | None:intergenic |
ACTTATGAGTAAATAGCAGA+TGG | 0.544269 | 6_3:-24406897 | None:intergenic |
AAGCATCCAACTTTGCTCAC+TGG | 0.546095 | 6_3:-24405365 | None:intergenic |
TGAAGATCAACTGCCTCAAA+GGG | 0.546216 | 6_3:+24406364 | Msa0945610:CDS |
GCCTTTACCTCAAGGTGGAA+GGG | 0.547026 | 6_3:+24406313 | Msa0945610:CDS |
TTAGGATGAAGTACCCTTTG+AGG | 0.550596 | 6_3:-24406377 | None:intergenic |
TGTGAAGAGGTTGCCTGAGA+AGG | 0.551471 | 6_3:+24404559 | Msa0945610:CDS |
AGATGATAAGACTTCAAACC+TGG | 0.551742 | 6_3:+24405045 | Msa0945610:CDS |
GTTGCCTGAGAAGGACATGC+CGG | 0.561370 | 6_3:+24404568 | Msa0945610:CDS |
CAAGATGATCAATCTGAGGT+TGG | 0.562902 | 6_3:+24404713 | Msa0945610:CDS |
AACTCAAGTCCTGCAGAGGA+AGG | 0.563302 | 6_3:-24404676 | None:intergenic |
TAACAGCATTAAAACTCATG+AGG | 0.565655 | 6_3:-24406923 | None:intergenic |
GGCACATTCAAACCCCATCC+CGG | 0.567117 | 6_3:-24404587 | None:intergenic |
AGAGCATTAGCAACTTTCAG+TGG | 0.569217 | 6_3:+24406634 | Msa0945610:CDS |
TTACTGTTTGCACAGGAGGT+GGG | 0.570348 | 6_3:-24404535 | None:intergenic |
AAGCAGATAACTCTGGAAGA+AGG | 0.573080 | 6_3:+24405172 | Msa0945610:CDS |
GAGCATTAGCAACTTTCAGT+GGG | 0.573278 | 6_3:+24406635 | Msa0945610:CDS |
CTGTCAGTCGTAGTACTCAC+AGG | 0.574410 | 6_3:+24404921 | Msa0945610:CDS |
AACAGCATTAAAACTCATGA+GGG | 0.575438 | 6_3:-24406922 | None:intergenic |
TTGATGACAATGGAGGTGAT+TGG | 0.580996 | 6_3:+24404891 | Msa0945610:CDS |
TTGCCTGAGAAGGACATGCC+GGG | 0.581019 | 6_3:+24404569 | Msa0945610:CDS |
TCCTCAAGATGATCAATCTG+AGG | 0.581434 | 6_3:+24404709 | Msa0945610:CDS |
CCGCCACGTTCATCACTCTC+CGG | 0.581461 | 6_3:-24404773 | None:intergenic |
AACTCTGAAGCAGATAACTC+TGG | 0.585499 | 6_3:+24405165 | Msa0945610:CDS |
ATCTTTGTCTGAATCTACTG+TGG | 0.586024 | 6_3:+24405390 | Msa0945610:CDS |
AGTTGCTAATGCTCTCCTGA+CGG | 0.586879 | 6_3:-24406626 | None:intergenic |
TAATGAAAATGGATTAATGA+TGG | 0.587751 | 6_3:+24405855 | Msa0945610:CDS |
GAGTTACATTACGTGGCACA+AGG | 0.590124 | 6_3:+24405893 | Msa0945610:CDS |
TGAGTACTACGACTGACAGC+AGG | 0.594924 | 6_3:-24404917 | None:intergenic |
AAGGAGATCCCTTAGAATTG+TGG | 0.596504 | 6_3:-24406594 | None:intergenic |
TTGAATATCCACTACTTACG+CGG | 0.598952 | 6_3:-24406691 | None:intergenic |
TTGCGCTTGCTGGCACCTGG+AGG | 0.601247 | 6_3:+24405463 | Msa0945610:CDS |
CTTATGAGTAAATAGCAGAT+GGG | 0.601501 | 6_3:-24406896 | None:intergenic |
TTCAGCCACCACAATTCTAA+GGG | 0.601789 | 6_3:+24406586 | Msa0945610:CDS |
GCGGAAATGGCGGCACCTTG+AGG | 0.602253 | 6_3:+24405815 | Msa0945610:CDS |
AAATGGCGGCACCTTGAGGA+AGG | 0.606950 | 6_3:+24405819 | Msa0945610:CDS |
CGACCTCGAGTTACATTACG+TGG | 0.607023 | 6_3:+24405886 | Msa0945610:CDS |
ATGTGCCTAATTTGGAAGAG+TGG | 0.608543 | 6_3:+24404603 | Msa0945610:CDS |
ACCTCAGATTGATCATCTTG+AGG | 0.608905 | 6_3:-24404710 | None:intergenic |
AACAAGGAAGAAAGCCAACA+AGG | 0.609876 | 6_3:+24406400 | Msa0945610:CDS |
TGTGCCTAATTTGGAAGAGT+GGG | 0.621322 | 6_3:+24404604 | Msa0945610:CDS |
CAATGACATAGTAAATCACT+CGG | 0.621478 | 6_3:+24405291 | Msa0945610:CDS |
TGTCCAAAATGCGGAAATGG+CGG | 0.624434 | 6_3:+24405805 | Msa0945610:CDS |
CAAGGACAAGTTGATGACAA+TGG | 0.627479 | 6_3:+24404881 | Msa0945610:CDS |
ACTGCATCCCTTCCACCTTG+AGG | 0.628249 | 6_3:-24406320 | None:intergenic |
TTCAAACTCAAGTCCTGCAG+AGG | 0.629113 | 6_3:-24404680 | None:intergenic |
GAAGGGAAGATGGTTGCTGA+TGG | 0.630809 | 6_3:+24404845 | Msa0945610:CDS |
TCACGGAACAAAACATCTCA+GGG | 0.633868 | 6_3:+24404508 | Msa0945610:CDS |
TGAATATCCACTACTTACGC+GGG | 0.635815 | 6_3:-24406690 | None:intergenic |
GGACGACGACTTCTATATGG+TGG | 0.638637 | 6_3:+24406555 | Msa0945610:intron |
GGGTACTTCATCCTAAAACA+AGG | 0.642784 | 6_3:+24406384 | Msa0945610:CDS |
GATGGAATTGATGCATCTCA+AGG | 0.646560 | 6_3:+24404863 | Msa0945610:CDS |
TGCAAACAGTAAATGTGAAG+AGG | 0.648385 | 6_3:+24404546 | Msa0945610:CDS |
GAGATCCCTTAGAATTGTGG+TGG | 0.651673 | 6_3:-24406591 | None:intergenic |
GCTAATGCTCTCCTGACGGG+AGG | 0.659205 | 6_3:-24406622 | None:intergenic |
AGTGACAGCTACCTTCCTCA+AGG | 0.664365 | 6_3:-24405830 | None:intergenic |
GTAATGTAACTCGAGGTCGA+CGG | 0.674307 | 6_3:-24405882 | None:intergenic |
TCATTGCCTTTACCTCAAGG+TGG | 0.675530 | 6_3:+24406308 | Msa0945610:CDS |
GTGCCACGTAATGTAACTCG+AGG | 0.676345 | 6_3:-24405889 | None:intergenic |
ATACATGCAGAGAACAATGA+CGG | 0.679329 | 6_3:+24405127 | Msa0945610:CDS |
ATGAACGTGGCGGTTCAATG+AGG | 0.682906 | 6_3:+24404783 | Msa0945610:CDS |
GGACAAGTTGATGACAATGG+AGG | 0.685424 | 6_3:+24404884 | Msa0945610:CDS |
AGCATTGGAACAGGAAACCG+AGG | 0.692406 | 6_3:+24404628 | Msa0945610:CDS |
TCTGCTTCAGAGTTGCAGAG+AGG | 0.697016 | 6_3:-24405156 | None:intergenic |
AGTTACATTACGTGGCACAA+GGG | 0.712686 | 6_3:+24405894 | Msa0945610:CDS |
ATTCCGGAGAGTGATGAACG+TGG | 0.742400 | 6_3:+24404770 | Msa0945610:CDS |
CCGGAGAGTGATGAACGTGG+CGG | 0.753397 | 6_3:+24404773 | Msa0945610:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATAAAAGAACATGATTTA+AGG | + | chr6_3:24406777-24406796 | Msa0945610:three_prime_UTR | 15.0% |
!!! | ATGTTTATCACTTTTTTCTT+AGG | - | chr6_3:24404824-24404843 | None:intergenic | 20.0% |
!! | AAAAAAGTGATAAACATTGA+AGG | + | chr6_3:24404827-24404846 | Msa0945610:CDS | 20.0% |
!! | AAAAAGTGATAAACATTGAA+GGG | + | chr6_3:24404828-24404847 | Msa0945610:CDS | 20.0% |
!! | AAAATTTACTTCAAATAGCA+AGG | - | chr6_3:24405561-24405580 | None:intergenic | 20.0% |
!!! | TAAATTTTTGTATGTGTGAA+GGG | + | chr6_3:24405573-24405592 | Msa0945610:intron | 20.0% |
!!! | TAATGAAAATGGATTAATGA+TGG | + | chr6_3:24405855-24405874 | Msa0945610:CDS | 20.0% |
!! | ATAATCATGTATCTTAAGAA+TGG | + | chr6_3:24406193-24406212 | Msa0945610:intron | 20.0% |
!!! | ATTCTGTTTTTTATTGCTAT+TGG | + | chr6_3:24406741-24406760 | Msa0945610:three_prime_UTR | 20.0% |
!!! | ATCTGTATAAGATTTAGTTT+GGG | + | chr6_3:24406807-24406826 | Msa0945610:three_prime_UTR | 20.0% |
!! | TAATCGATAATTTAAGAGTA+CGG | + | chr6_3:24406947-24406966 | Msa0945610:three_prime_UTR | 20.0% |
! | TAATCAAGATCAACAAGATA+TGG | + | chr6_3:24404994-24405013 | Msa0945610:CDS | 25.0% |
!!! | TATTGAAAATGTTGTTTCCA+AGG | + | chr6_3:24405096-24405115 | Msa0945610:CDS | 25.0% |
!! | GTAAATTTTTGTATGTGTGA+AGG | + | chr6_3:24405572-24405591 | Msa0945610:intron | 25.0% |
! | TCATAGAGATTAGAAGAAAT+AGG | - | chr6_3:24405659-24405678 | None:intergenic | 25.0% |
! | TTAATTATTTGCATTCCAGA+TGG | + | chr6_3:24405728-24405747 | Msa0945610:intron | 25.0% |
! | TGAGTATATTATGAGATACT+GGG | + | chr6_3:24405917-24405936 | Msa0945610:intron | 25.0% |
! | ATAAAATGACTAGCATACTA+GGG | - | chr6_3:24405969-24405988 | None:intergenic | 25.0% |
! | TATAAAATGACTAGCATACT+AGG | - | chr6_3:24405970-24405989 | None:intergenic | 25.0% |
! | TTGTTGAATACTAGATTCAT+GGG | + | chr6_3:24406029-24406048 | Msa0945610:intron | 25.0% |
! | GATTATAATGTATTTCACAC+CGG | + | chr6_3:24406091-24406110 | Msa0945610:intron | 25.0% |
!!! | AGATGTTGATTTTCATTTGT+AGG | + | chr6_3:24406169-24406188 | Msa0945610:intron | 25.0% |
! | TACTTAATAACACACTTTGT+AGG | + | chr6_3:24406534-24406553 | Msa0945610:intron | 25.0% |
! | AATAAAAAACAGAATTGAGG+GGG | - | chr6_3:24406736-24406755 | None:intergenic | 25.0% |
! | CAATAAAAAACAGAATTGAG+GGG | - | chr6_3:24406737-24406756 | None:intergenic | 25.0% |
! | GCAATAAAAAACAGAATTGA+GGG | - | chr6_3:24406738-24406757 | None:intergenic | 25.0% |
! | AGCAATAAAAAACAGAATTG+AGG | - | chr6_3:24406739-24406758 | None:intergenic | 25.0% |
!!! | TGTTTTTTATTGCTATTGGA+AGG | + | chr6_3:24406745-24406764 | Msa0945610:three_prime_UTR | 25.0% |
! | CATCTGTATAAGATTTAGTT+TGG | + | chr6_3:24406806-24406825 | Msa0945610:three_prime_UTR | 25.0% |
! | ACATGATTAACATCATGATT+TGG | + | chr6_3:24406841-24406860 | Msa0945610:three_prime_UTR | 25.0% |
! | CATGATTAACATCATGATTT+GGG | + | chr6_3:24406842-24406861 | Msa0945610:three_prime_UTR | 25.0% |
CATTGCTCTAACTTATACTT+TGG | + | chr6_3:24404475-24404494 | Msa0945610:CDS | 30.0% | |
ATCTTGTTGATCTTGATTAC+TGG | - | chr6_3:24404993-24405012 | None:intergenic | 30.0% | |
GATATGGAAGAAAACATTGA+TGG | + | chr6_3:24405010-24405029 | Msa0945610:CDS | 30.0% | |
CAATGACATAGTAAATCACT+CGG | + | chr6_3:24405291-24405310 | Msa0945610:CDS | 30.0% | |
ATTGTTACTAGTTAGTTGCA+CGG | + | chr6_3:24405513-24405532 | Msa0945610:intron | 30.0% | |
GTGAGTATATTATGAGATAC+TGG | + | chr6_3:24405916-24405935 | Msa0945610:intron | 30.0% | |
TAAAATGACTAGCATACTAG+GGG | - | chr6_3:24405968-24405987 | None:intergenic | 30.0% | |
GTTGTTGAATACTAGATTCA+TGG | + | chr6_3:24406028-24406047 | Msa0945610:intron | 30.0% | |
TGGTTAAACCATTTACAAGA+TGG | + | chr6_3:24406213-24406232 | Msa0945610:intron | 30.0% | |
GGTTAAACCATTTACAAGAT+GGG | + | chr6_3:24406214-24406233 | Msa0945610:intron | 30.0% | |
ATATCATCCCATCTTGTAAA+TGG | - | chr6_3:24406224-24406243 | None:intergenic | 30.0% | |
!! | AGTAGTGGATATTCAAAACT+TGG | + | chr6_3:24406698-24406717 | Msa0945610:exon | 30.0% |
! | AAAGAACATGATTTAAGGCA+TGG | + | chr6_3:24406782-24406801 | Msa0945610:three_prime_UTR | 30.0% |
!! | GATTTAGTTTGGGTGATATA+TGG | + | chr6_3:24406817-24406836 | Msa0945610:three_prime_UTR | 30.0% |
!! | TAACATCATGATTTGGGTTT+TGG | + | chr6_3:24406848-24406867 | Msa0945610:three_prime_UTR | 30.0% |
CTTATGAGTAAATAGCAGAT+GGG | - | chr6_3:24406899-24406918 | None:intergenic | 30.0% | |
ACTTATGAGTAAATAGCAGA+TGG | - | chr6_3:24406900-24406919 | None:intergenic | 30.0% | |
AACAGCATTAAAACTCATGA+GGG | - | chr6_3:24406925-24406944 | None:intergenic | 30.0% | |
TAACAGCATTAAAACTCATG+AGG | - | chr6_3:24406926-24406945 | None:intergenic | 30.0% | |
TGCTCTAACTTATACTTTGG+AGG | + | chr6_3:24404478-24404497 | Msa0945610:CDS | 35.0% | |
TTCACATTTACTGTTTGCAC+AGG | - | chr6_3:24404545-24404564 | None:intergenic | 35.0% | |
TGCAAACAGTAAATGTGAAG+AGG | + | chr6_3:24404546-24404565 | Msa0945610:CDS | 35.0% | |
TGAAACTCTTCCAGAAATTC+CGG | + | chr6_3:24404754-24404773 | Msa0945610:CDS | 35.0% | |
GATAAACATTGAAGGGAAGA+TGG | + | chr6_3:24404835-24404854 | Msa0945610:CDS | 35.0% | |
AGATGATAAGACTTCAAACC+TGG | + | chr6_3:24405045-24405064 | Msa0945610:CDS | 35.0% | |
TATGCTTCTCATCATCACTT+TGG | - | chr6_3:24405078-24405097 | None:intergenic | 35.0% | |
TGCATGTATCATATCATCCT+TGG | - | chr6_3:24405116-24405135 | None:intergenic | 35.0% | |
ATACATGCAGAGAACAATGA+CGG | + | chr6_3:24405127-24405146 | Msa0945610:CDS | 35.0% | |
AAATTTGCACTGCTATCTTC+AGG | - | chr6_3:24405241-24405260 | None:intergenic | 35.0% | |
TGAAGATAGCAGTGCAAATT+TGG | + | chr6_3:24405240-24405259 | Msa0945610:CDS | 35.0% | |
ATCTTTGTCTGAATCTACTG+TGG | + | chr6_3:24405390-24405409 | Msa0945610:CDS | 35.0% | |
CAGAATGTTCTTCTCCAAAT+GGG | + | chr6_3:24405439-24405458 | Msa0945610:CDS | 35.0% | |
TTACTTCAAATAGCAAGGAC+AGG | - | chr6_3:24405556-24405575 | None:intergenic | 35.0% | |
AATAGCATATTGTGCTTCGT+AGG | - | chr6_3:24405688-24405707 | None:intergenic | 35.0% | |
TTCACTGTTACTGCTGAAAT+TGG | + | chr6_3:24405772-24405791 | Msa0945610:CDS | 35.0% | |
! | AGGATTTTCTGTCCAAAATG+CGG | + | chr6_3:24405796-24405815 | Msa0945610:CDS | 35.0% |
GCTGTCACTGTTAATGAAAA+TGG | + | chr6_3:24405844-24405863 | Msa0945610:CDS | 35.0% | |
ATCAGATCTTATATCTCTCC+AGG | - | chr6_3:24406118-24406137 | None:intergenic | 35.0% | |
CATCTATCTAAGAGAACTTG+CGG | - | chr6_3:24406154-24406173 | None:intergenic | 35.0% | |
!!! | TTGGCTTTCTTCCTTGTTTT+AGG | - | chr6_3:24406398-24406417 | None:intergenic | 35.0% |
AAACACACAAACAACCTTGT+TGG | - | chr6_3:24406417-24406436 | None:intergenic | 35.0% | |
TTGAATATCCACTACTTACG+CGG | - | chr6_3:24406694-24406713 | None:intergenic | 35.0% | |
!!! | TGGGTTTTGGTTATTTCTTC+TGG | + | chr6_3:24406861-24406880 | Msa0945610:three_prime_UTR | 35.0% |
TTCACGGAACAAAACATCTC+AGG | + | chr6_3:24404507-24404526 | Msa0945610:CDS | 40.0% | |
TCACGGAACAAAACATCTCA+GGG | + | chr6_3:24404508-24404527 | Msa0945610:CDS | 40.0% | |
ACATTTACTGTTTGCACAGG+AGG | - | chr6_3:24404542-24404561 | None:intergenic | 40.0% | |
GGGTTTGAATGTGCCTAATT+TGG | + | chr6_3:24404595-24404614 | Msa0945610:CDS | 40.0% | |
ATGTGCCTAATTTGGAAGAG+TGG | + | chr6_3:24404603-24404622 | Msa0945610:CDS | 40.0% | |
TGTGCCTAATTTGGAAGAGT+GGG | + | chr6_3:24404604-24404623 | Msa0945610:CDS | 40.0% | |
ATCGGAATTTGCATTGTCCT+CGG | - | chr6_3:24404648-24404667 | None:intergenic | 40.0% | |
CAGAGGAAGGATTCTTGAAT+CGG | - | chr6_3:24404666-24404685 | None:intergenic | 40.0% | |
TCCTCAAGATGATCAATCTG+AGG | + | chr6_3:24404709-24404728 | Msa0945610:CDS | 40.0% | |
ACCTCAGATTGATCATCTTG+AGG | - | chr6_3:24404713-24404732 | None:intergenic | 40.0% | |
! | CAAGATGATCAATCTGAGGT+TGG | + | chr6_3:24404713-24404732 | Msa0945610:CDS | 40.0% |
! | TGATCAATCTGAGGTTGGTT+CGG | + | chr6_3:24404718-24404737 | Msa0945610:CDS | 40.0% |
GATGGAATTGATGCATCTCA+AGG | + | chr6_3:24404863-24404882 | Msa0945610:CDS | 40.0% | |
!! | CAAGGACAAGTTGATGACAA+TGG | + | chr6_3:24404881-24404900 | Msa0945610:CDS | 40.0% |
! | TTGATGACAATGGAGGTGAT+TGG | + | chr6_3:24404891-24404910 | Msa0945610:CDS | 40.0% |
!! | AACTCTGAAGCAGATAACTC+TGG | + | chr6_3:24405165-24405184 | Msa0945610:CDS | 40.0% |
! | AAGCAGATAACTCTGGAAGA+AGG | + | chr6_3:24405172-24405191 | Msa0945610:CDS | 40.0% |
TGCAAAGTCACCAGTTATAC+AGG | - | chr6_3:24405416-24405435 | None:intergenic | 40.0% | |
GCAGAATGTTCTTCTCCAAA+TGG | + | chr6_3:24405438-24405457 | Msa0945610:CDS | 40.0% | |
GTAACAATTACCTGTGCAAC+TGG | - | chr6_3:24405501-24405520 | None:intergenic | 40.0% | |
ATGACACTTGAGTATCCATC+TGG | - | chr6_3:24405746-24405765 | None:intergenic | 40.0% | |
CTGTTACTGCTGAAATTGGA+AGG | + | chr6_3:24405776-24405795 | Msa0945610:CDS | 40.0% | |
TTCTGTCCAAAATGCGGAAA+TGG | + | chr6_3:24405802-24405821 | Msa0945610:CDS | 40.0% | |
AGTTACATTACGTGGCACAA+GGG | + | chr6_3:24405894-24405913 | Msa0945610:CDS | 40.0% | |
AACGAGTTCTTTCAGTCACT+TGG | + | chr6_3:24405994-24406013 | Msa0945610:intron | 40.0% | |
ATCTTATATCTCTCCAGGAC+CGG | - | chr6_3:24406113-24406132 | None:intergenic | 40.0% | |
TTCTCATTGCCTTTACCTCA+AGG | + | chr6_3:24406305-24406324 | Msa0945610:CDS | 40.0% | |
! | TTTGAGGCAGTTGATCTTCA+CGG | - | chr6_3:24406364-24406383 | None:intergenic | 40.0% |
TGAAGATCAACTGCCTCAAA+GGG | + | chr6_3:24406364-24406383 | Msa0945610:CDS | 40.0% | |
! | TTAGGATGAAGTACCCTTTG+AGG | - | chr6_3:24406380-24406399 | None:intergenic | 40.0% |
GGGTACTTCATCCTAAAACA+AGG | + | chr6_3:24406384-24406403 | Msa0945610:CDS | 40.0% | |
AACAAGGAAGAAAGCCAACA+AGG | + | chr6_3:24406400-24406419 | Msa0945610:CDS | 40.0% | |
TTCAGCCACCACAATTCTAA+GGG | + | chr6_3:24406586-24406605 | Msa0945610:CDS | 40.0% | |
AAGGAGATCCCTTAGAATTG+TGG | - | chr6_3:24406597-24406616 | None:intergenic | 40.0% | |
! | AGAGCATTAGCAACTTTCAG+TGG | + | chr6_3:24406634-24406653 | Msa0945610:CDS | 40.0% |
GAGCATTAGCAACTTTCAGT+GGG | + | chr6_3:24406635-24406654 | Msa0945610:CDS | 40.0% | |
CGTGAGTAGTGATTGTCATT+TGG | - | chr6_3:24406670-24406689 | None:intergenic | 40.0% | |
TGAATATCCACTACTTACGC+GGG | - | chr6_3:24406693-24406712 | None:intergenic | 40.0% | |
GTGGATATTCAAAACTTGGC+TGG | + | chr6_3:24406702-24406721 | Msa0945610:exon | 40.0% | |
!! | GTCAAGTTTGCTAGGGTTAC+TGG | + | chr6_3:24404416-24404435 | Msa0945610:CDS | 45.0% |
! | ACTTTGGAGGCTCAGATTCA+CGG | + | chr6_3:24404491-24404510 | Msa0945610:CDS | 45.0% |
TTACTGTTTGCACAGGAGGT+GGG | - | chr6_3:24404538-24404557 | None:intergenic | 45.0% | |
TTTACTGTTTGCACAGGAGG+TGG | - | chr6_3:24404539-24404558 | None:intergenic | 45.0% | |
GCTTCCCACTCTTCCAAATT+AGG | - | chr6_3:24404611-24404630 | None:intergenic | 45.0% | |
! | TTTGGAAGAGTGGGAAGCAT+TGG | + | chr6_3:24404613-24404632 | Msa0945610:CDS | 45.0% |
TTCAAGAATCCTTCCTCTGC+AGG | + | chr6_3:24404667-24404686 | Msa0945610:CDS | 45.0% | |
TTCAAACTCAAGTCCTGCAG+AGG | - | chr6_3:24404683-24404702 | None:intergenic | 45.0% | |
TCATCACTCTCCGGAATTTC+TGG | - | chr6_3:24404767-24404786 | None:intergenic | 45.0% | |
!! | GGACAAGTTGATGACAATGG+AGG | + | chr6_3:24404884-24404903 | Msa0945610:CDS | 45.0% |
CTATCTTCAGGAGACAGACT+TGG | - | chr6_3:24405229-24405248 | None:intergenic | 45.0% | |
ATGATGCCAGTGAGCAAAGT+TGG | + | chr6_3:24405359-24405378 | Msa0945610:CDS | 45.0% | |
AAGCATCCAACTTTGCTCAC+TGG | - | chr6_3:24405368-24405387 | None:intergenic | 45.0% | |
TCTACTGTGGCCTGTATAAC+TGG | + | chr6_3:24405403-24405422 | Msa0945610:CDS | 45.0% | |
TTCAGCAGTAACAGTGAAGC+AGG | - | chr6_3:24405770-24405789 | None:intergenic | 45.0% | |
TGTCCAAAATGCGGAAATGG+CGG | + | chr6_3:24405805-24405824 | Msa0945610:CDS | 45.0% | |
TAATGTAACTCGAGGTCGAC+GGG | - | chr6_3:24405884-24405903 | None:intergenic | 45.0% | |
GTAATGTAACTCGAGGTCGA+CGG | - | chr6_3:24405885-24405904 | None:intergenic | 45.0% | |
GAGTTACATTACGTGGCACA+AGG | + | chr6_3:24405893-24405912 | Msa0945610:CDS | 45.0% | |
AATGTATTTCACACCGGTCC+TGG | + | chr6_3:24406097-24406116 | Msa0945610:intron | 45.0% | |
TCATTGCCTTTACCTCAAGG+TGG | + | chr6_3:24406308-24406327 | Msa0945610:CDS | 45.0% | |
GTGAAGATCAACTGCCTCAA+AGG | + | chr6_3:24406363-24406382 | Msa0945610:CDS | 45.0% | |
AAAGAACACCACACTCTCGT+GGG | - | chr6_3:24406467-24406486 | None:intergenic | 45.0% | |
TAAAGAACACCACACTCTCG+TGG | - | chr6_3:24406468-24406487 | None:intergenic | 45.0% | |
GTAGGACGACGACTTCTATA+TGG | + | chr6_3:24406552-24406571 | Msa0945610:intron | 45.0% | |
CTTCAGCCACCACAATTCTA+AGG | + | chr6_3:24406585-24406604 | Msa0945610:CDS | 45.0% | |
GAGATCCCTTAGAATTGTGG+TGG | - | chr6_3:24406594-24406613 | None:intergenic | 45.0% | |
AGTTGCTAATGCTCTCCTGA+CGG | - | chr6_3:24406629-24406648 | None:intergenic | 45.0% | |
!! | TAATTAATAAATAATAGATT+TGG | + | chr6_3:24406062-24406081 | Msa0945610:intron | 5.0% |
TGTGAAGAGGTTGCCTGAGA+AGG | + | chr6_3:24404559-24404578 | Msa0945610:CDS | 50.0% | |
!! | AGAGTGGGAAGCATTGGAAC+AGG | + | chr6_3:24404619-24404638 | Msa0945610:CDS | 50.0% |
! | AGCATTGGAACAGGAAACCG+AGG | + | chr6_3:24404628-24404647 | Msa0945610:CDS | 50.0% |
AACTCAAGTCCTGCAGAGGA+AGG | - | chr6_3:24404679-24404698 | None:intergenic | 50.0% | |
ATTCCGGAGAGTGATGAACG+TGG | + | chr6_3:24404770-24404789 | Msa0945610:CDS | 50.0% | |
ATGAACGTGGCGGTTCAATG+AGG | + | chr6_3:24404783-24404802 | Msa0945610:CDS | 50.0% | |
GAAGGGAAGATGGTTGCTGA+TGG | + | chr6_3:24404845-24404864 | Msa0945610:CDS | 50.0% | |
TGAGTACTACGACTGACAGC+AGG | - | chr6_3:24404920-24404939 | None:intergenic | 50.0% | |
CTGTCAGTCGTAGTACTCAC+AGG | + | chr6_3:24404921-24404940 | Msa0945610:CDS | 50.0% | |
! | CATCACTTTGGTGCACATCC+AGG | - | chr6_3:24405066-24405085 | None:intergenic | 50.0% |
CTGCTTCAGAGTTGCAGAGA+GGG | - | chr6_3:24405158-24405177 | None:intergenic | 50.0% | |
TCTGCTTCAGAGTTGCAGAG+AGG | - | chr6_3:24405159-24405178 | None:intergenic | 50.0% | |
CATCAGCAGCTTCACTTGAC+TGG | - | chr6_3:24405327-24405346 | None:intergenic | 50.0% | |
TGGTGTATCTGTGATCCTCC+AGG | - | chr6_3:24405481-24405500 | None:intergenic | 50.0% | |
CACAGATACACCAGTTGCAC+AGG | + | chr6_3:24405488-24405507 | Msa0945610:CDS | 50.0% | |
AGTGACAGCTACCTTCCTCA+AGG | - | chr6_3:24405833-24405852 | None:intergenic | 50.0% | |
CGACCTCGAGTTACATTACG+TGG | + | chr6_3:24405886-24405905 | Msa0945610:CDS | 50.0% | |
GTGCCACGTAATGTAACTCG+AGG | - | chr6_3:24405892-24405911 | None:intergenic | 50.0% | |
TGCCTTTACCTCAAGGTGGA+AGG | + | chr6_3:24406312-24406331 | Msa0945610:CDS | 50.0% | |
GCCTTTACCTCAAGGTGGAA+GGG | + | chr6_3:24406313-24406332 | Msa0945610:CDS | 50.0% | |
TCCCTTCCACCTTGAGGTAA+AGG | - | chr6_3:24406317-24406336 | None:intergenic | 50.0% | |
GGACGACGACTTCTATATGG+TGG | + | chr6_3:24406555-24406574 | Msa0945610:intron | 50.0% | |
GTTGCTAATGCTCTCCTGAC+GGG | - | chr6_3:24406628-24406647 | None:intergenic | 50.0% | |
GTTGCCTGAGAAGGACATGC+CGG | + | chr6_3:24404568-24404587 | Msa0945610:CDS | 55.0% | |
TTGCCTGAGAAGGACATGCC+GGG | + | chr6_3:24404569-24404588 | Msa0945610:CDS | 55.0% | |
TGAGAAGGACATGCCGGGAT+GGG | + | chr6_3:24404574-24404593 | Msa0945610:CDS | 55.0% | |
GGCACATTCAAACCCCATCC+CGG | - | chr6_3:24404590-24404609 | None:intergenic | 55.0% | |
CCAGCAAGCGCAAACCCATT+TGG | - | chr6_3:24405456-24405475 | None:intergenic | 55.0% | |
! | CCAAATGGGTTTGCGCTTGC+TGG | + | chr6_3:24405453-24405472 | Msa0945610:CDS | 55.0% |
! | GTGCCGCCATTTCCGCATTT+TGG | - | chr6_3:24405811-24405830 | None:intergenic | 55.0% |
AAATGGCGGCACCTTGAGGA+AGG | + | chr6_3:24405819-24405838 | Msa0945610:CDS | 55.0% | |
ACTGCATCCCTTCCACCTTG+AGG | - | chr6_3:24406323-24406342 | None:intergenic | 55.0% | |
GTTCGTTTCCCACGAGAGTG+TGG | + | chr6_3:24406456-24406475 | Msa0945610:intron | 55.0% | |
CATCCCGGCATGTCCTTCTC+AGG | - | chr6_3:24404575-24404594 | None:intergenic | 60.0% | |
CTGAGAAGGACATGCCGGGA+TGG | + | chr6_3:24404573-24404592 | Msa0945610:CDS | 60.0% | |
GAGAAGGACATGCCGGGATG+GGG | + | chr6_3:24404575-24404594 | Msa0945610:CDS | 60.0% | |
CCGCCACGTTCATCACTCTC+CGG | - | chr6_3:24404776-24404795 | None:intergenic | 60.0% | |
CCGGAGAGTGATGAACGTGG+CGG | + | chr6_3:24404773-24404792 | Msa0945610:CDS | 60.0% | |
GCTAATGCTCTCCTGACGGG+AGG | - | chr6_3:24406625-24406644 | None:intergenic | 60.0% | |
ACTCACGCCCGCGTAAGTAG+TGG | + | chr6_3:24406683-24406702 | Msa0945610:CDS | 60.0% | |
! | GGTTTGCGCTTGCTGGCACC+TGG | + | chr6_3:24405460-24405479 | Msa0945610:CDS | 65.0% |
! | TTGCGCTTGCTGGCACCTGG+AGG | + | chr6_3:24405463-24405482 | Msa0945610:CDS | 65.0% |
GCGGAAATGGCGGCACCTTG+AGG | + | chr6_3:24405815-24405834 | Msa0945610:CDS | 65.0% | |
CTCCTTTCCAGCCTCCCGTC+AGG | + | chr6_3:24406611-24406630 | Msa0945610:CDS | 65.0% | |
CTCCTGACGGGAGGCTGGAA+AGG | - | chr6_3:24406616-24406635 | None:intergenic | 65.0% | |
ATGCTCTCCTGACGGGAGGC+TGG | - | chr6_3:24406621-24406640 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 24404413 | 24406987 | 24404413 | ID=Msa0945610;Name=Msa0945610 |
chr6_3 | mRNA | 24404413 | 24406987 | 24404413 | ID=Msa0945610-mRNA-1;Parent=Msa0945610;Name=Msa0945610-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|1|0.75|1|1|1|4|285|509 |
chr6_3 | exon | 24404413 | 24405509 | 24404413 | ID=Msa0945610-mRNA-1:exon:6992;Parent=Msa0945610-mRNA-1 |
chr6_3 | exon | 24405747 | 24405915 | 24405747 | ID=Msa0945610-mRNA-1:exon:6993;Parent=Msa0945610-mRNA-1 |
chr6_3 | exon | 24406305 | 24406421 | 24406305 | ID=Msa0945610-mRNA-1:exon:6994;Parent=Msa0945610-mRNA-1 |
chr6_3 | exon | 24406556 | 24406987 | 24406556 | ID=Msa0945610-mRNA-1:exon:6995;Parent=Msa0945610-mRNA-1 |
chr6_3 | CDS | 24404413 | 24405509 | 24404413 | ID=Msa0945610-mRNA-1:cds;Parent=Msa0945610-mRNA-1 |
chr6_3 | CDS | 24405747 | 24405915 | 24405747 | ID=Msa0945610-mRNA-1:cds;Parent=Msa0945610-mRNA-1 |
chr6_3 | CDS | 24406305 | 24406421 | 24406305 | ID=Msa0945610-mRNA-1:cds;Parent=Msa0945610-mRNA-1 |
chr6_3 | CDS | 24406556 | 24406702 | 24406556 | ID=Msa0945610-mRNA-1:cds;Parent=Msa0945610-mRNA-1 |
chr6_3 | three_prime_UTR | 24406703 | 24406987 | 24406703 | ID=Msa0945610-mRNA-1:three_prime_utr;Parent=Msa0945610-mRNA-1 |
Gene Sequence |
Protein sequence |