AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0945610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945610 MtrunA17_Chr8g0386641 97.839 509 11 0 1 509 105 613 0.0 1035
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945610 AT5G41190.1 56.538 520 185 9 1 506 107 599 0.0 572

Find 146 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCACTCTCCGGAATTTC+TGG 0.117528 6_3:-24404764 None:intergenic
GTGCCGCCATTTCCGCATTT+TGG 0.159935 6_3:-24405808 None:intergenic
TTATAAAAGAACATGATTTA+AGG 0.189296 6_3:+24406777 Msa0945610:three_prime_UTR
TAACATCATGATTTGGGTTT+TGG 0.197393 6_3:+24406848 Msa0945610:three_prime_UTR
CCAAATGGGTTTGCGCTTGC+TGG 0.207884 6_3:+24405453 Msa0945610:CDS
TGAAGATAGCAGTGCAAATT+TGG 0.219331 6_3:+24405240 Msa0945610:CDS
GCTTCCCACTCTTCCAAATT+AGG 0.241820 6_3:-24404608 None:intergenic
GTCAAGTTTGCTAGGGTTAC+TGG 0.249525 6_3:+24404416 Msa0945610:CDS
ATCTTGTTGATCTTGATTAC+TGG 0.256732 6_3:-24404990 None:intergenic
ACATGATTAACATCATGATT+TGG 0.263484 6_3:+24406841 Msa0945610:three_prime_UTR
GGGTTTGAATGTGCCTAATT+TGG 0.276019 6_3:+24404595 Msa0945610:CDS
CATCTGTATAAGATTTAGTT+TGG 0.283524 6_3:+24406806 Msa0945610:three_prime_UTR
GATTTAGTTTGGGTGATATA+TGG 0.283679 6_3:+24406817 Msa0945610:three_prime_UTR
TTCACTGTTACTGCTGAAAT+TGG 0.291257 6_3:+24405772 Msa0945610:CDS
CATTGCTCTAACTTATACTT+TGG 0.301873 6_3:+24404475 Msa0945610:CDS
GCTGTCACTGTTAATGAAAA+TGG 0.309540 6_3:+24405844 Msa0945610:CDS
CTTCAGCCACCACAATTCTA+AGG 0.325731 6_3:+24406585 Msa0945610:CDS
CATGATTAACATCATGATTT+GGG 0.327542 6_3:+24406842 Msa0945610:three_prime_UTR
GTAGGACGACGACTTCTATA+TGG 0.345158 6_3:+24406552 Msa0945610:intron
TTCTGTCCAAAATGCGGAAA+TGG 0.367588 6_3:+24405802 Msa0945610:CDS
CGTGAGTAGTGATTGTCATT+TGG 0.375242 6_3:-24406667 None:intergenic
AAACACACAAACAACCTTGT+TGG 0.376229 6_3:-24406414 None:intergenic
CATCAGCAGCTTCACTTGAC+TGG 0.379113 6_3:-24405324 None:intergenic
TGAAACTCTTCCAGAAATTC+CGG 0.384527 6_3:+24404754 Msa0945610:CDS
TAATCAAGATCAACAAGATA+TGG 0.384551 6_3:+24404994 Msa0945610:CDS
TCTACTGTGGCCTGTATAAC+TGG 0.386129 6_3:+24405403 Msa0945610:CDS
GCAGAATGTTCTTCTCCAAA+TGG 0.387712 6_3:+24405438 Msa0945610:CDS
CCAGCAAGCGCAAACCCATT+TGG 0.393658 6_3:-24405453 None:intergenic
TGCAAAGTCACCAGTTATAC+AGG 0.407508 6_3:-24405413 None:intergenic
CAGAATGTTCTTCTCCAAAT+GGG 0.409413 6_3:+24405439 Msa0945610:CDS
GGTTTGCGCTTGCTGGCACC+TGG 0.419244 6_3:+24405460 Msa0945610:CDS
ATGCTCTCCTGACGGGAGGC+TGG 0.424797 6_3:-24406618 None:intergenic
TGCTCTAACTTATACTTTGG+AGG 0.431975 6_3:+24404478 Msa0945610:CDS
TGTTAGTTGTCAAGTTTGCT+AGG 0.431988 6_3:+24404408 None:intergenic
TTCAAGAATCCTTCCTCTGC+AGG 0.435157 6_3:+24404667 Msa0945610:CDS
CATCCCGGCATGTCCTTCTC+AGG 0.436359 6_3:-24404572 None:intergenic
TTTGGAAGAGTGGGAAGCAT+TGG 0.442947 6_3:+24404613 Msa0945610:CDS
ATCTGTATAAGATTTAGTTT+GGG 0.444292 6_3:+24406807 Msa0945610:three_prime_UTR
TTCACGGAACAAAACATCTC+AGG 0.444574 6_3:+24404507 Msa0945610:CDS
TCCCTTCCACCTTGAGGTAA+AGG 0.445988 6_3:-24406314 None:intergenic
CTCCTTTCCAGCCTCCCGTC+AGG 0.448309 6_3:+24406611 Msa0945610:CDS
CATCACTTTGGTGCACATCC+AGG 0.451839 6_3:-24405063 None:intergenic
TTCTCATTGCCTTTACCTCA+AGG 0.454002 6_3:+24406305 Msa0945610:CDS
GTAACAATTACCTGTGCAAC+TGG 0.456239 6_3:-24405498 None:intergenic
TGAGAAGGACATGCCGGGAT+GGG 0.464992 6_3:+24404574 Msa0945610:CDS
TGCATGTATCATATCATCCT+TGG 0.465343 6_3:-24405113 None:intergenic
TTTGAGGCAGTTGATCTTCA+CGG 0.467872 6_3:-24406361 None:intergenic
TATTGAAAATGTTGTTTCCA+AGG 0.469382 6_3:+24405096 Msa0945610:CDS
TTTACTGTTTGCACAGGAGG+TGG 0.471720 6_3:-24404536 None:intergenic
CAGAGGAAGGATTCTTGAAT+CGG 0.479778 6_3:-24404663 None:intergenic
CTCCTGACGGGAGGCTGGAA+AGG 0.481280 6_3:-24406613 None:intergenic
ACTTTGGAGGCTCAGATTCA+CGG 0.490488 6_3:+24404491 Msa0945610:CDS
TTCAGCAGTAACAGTGAAGC+AGG 0.491505 6_3:-24405767 None:intergenic
GATATGGAAGAAAACATTGA+TGG 0.491605 6_3:+24405010 Msa0945610:CDS
ATGATGCCAGTGAGCAAAGT+TGG 0.492731 6_3:+24405359 Msa0945610:CDS
AAATTTGCACTGCTATCTTC+AGG 0.493660 6_3:-24405238 None:intergenic
GTTAGTTGTCAAGTTTGCTA+GGG 0.494452 6_3:+24404409 None:intergenic
GATAAACATTGAAGGGAAGA+TGG 0.494792 6_3:+24404835 Msa0945610:CDS
ATCGGAATTTGCATTGTCCT+CGG 0.495690 6_3:-24404645 None:intergenic
GTGGATATTCAAAACTTGGC+TGG 0.497458 6_3:+24406702 Msa0945610:exon
CTATCTTCAGGAGACAGACT+TGG 0.499148 6_3:-24405226 None:intergenic
TAATCGATAATTTAAGAGTA+CGG 0.501021 6_3:+24406947 Msa0945610:three_prime_UTR
CACAGATACACCAGTTGCAC+AGG 0.501209 6_3:+24405488 Msa0945610:CDS
TAATGTAACTCGAGGTCGAC+GGG 0.502431 6_3:-24405881 None:intergenic
TGATCAATCTGAGGTTGGTT+CGG 0.503635 6_3:+24404718 Msa0945610:CDS
CTGAGAAGGACATGCCGGGA+TGG 0.508366 6_3:+24404573 Msa0945610:CDS
TATGCTTCTCATCATCACTT+TGG 0.511242 6_3:-24405075 None:intergenic
ACATTTACTGTTTGCACAGG+AGG 0.511908 6_3:-24404539 None:intergenic
AGAGTGGGAAGCATTGGAAC+AGG 0.513153 6_3:+24404619 Msa0945610:CDS
TGCCTTTACCTCAAGGTGGA+AGG 0.513861 6_3:+24406312 Msa0945610:CDS
CTGTTACTGCTGAAATTGGA+AGG 0.516329 6_3:+24405776 Msa0945610:CDS
GTGAAGATCAACTGCCTCAA+AGG 0.522194 6_3:+24406363 Msa0945610:CDS
AGTAGTGGATATTCAAAACT+TGG 0.522912 6_3:+24406698 Msa0945610:exon
GTTGCTAATGCTCTCCTGAC+GGG 0.532845 6_3:-24406625 None:intergenic
CTGCTTCAGAGTTGCAGAGA+GGG 0.534240 6_3:-24405155 None:intergenic
AAAGAACATGATTTAAGGCA+TGG 0.535216 6_3:+24406782 Msa0945610:three_prime_UTR
GAGAAGGACATGCCGGGATG+GGG 0.535504 6_3:+24404575 Msa0945610:CDS
TTCACATTTACTGTTTGCAC+AGG 0.537571 6_3:-24404542 None:intergenic
ACTCACGCCCGCGTAAGTAG+TGG 0.542669 6_3:+24406683 Msa0945610:CDS
TGGTGTATCTGTGATCCTCC+AGG 0.544263 6_3:-24405478 None:intergenic
ACTTATGAGTAAATAGCAGA+TGG 0.544269 6_3:-24406897 None:intergenic
AAGCATCCAACTTTGCTCAC+TGG 0.546095 6_3:-24405365 None:intergenic
TGAAGATCAACTGCCTCAAA+GGG 0.546216 6_3:+24406364 Msa0945610:CDS
GCCTTTACCTCAAGGTGGAA+GGG 0.547026 6_3:+24406313 Msa0945610:CDS
TTAGGATGAAGTACCCTTTG+AGG 0.550596 6_3:-24406377 None:intergenic
TGTGAAGAGGTTGCCTGAGA+AGG 0.551471 6_3:+24404559 Msa0945610:CDS
AGATGATAAGACTTCAAACC+TGG 0.551742 6_3:+24405045 Msa0945610:CDS
GTTGCCTGAGAAGGACATGC+CGG 0.561370 6_3:+24404568 Msa0945610:CDS
CAAGATGATCAATCTGAGGT+TGG 0.562902 6_3:+24404713 Msa0945610:CDS
AACTCAAGTCCTGCAGAGGA+AGG 0.563302 6_3:-24404676 None:intergenic
TAACAGCATTAAAACTCATG+AGG 0.565655 6_3:-24406923 None:intergenic
GGCACATTCAAACCCCATCC+CGG 0.567117 6_3:-24404587 None:intergenic
AGAGCATTAGCAACTTTCAG+TGG 0.569217 6_3:+24406634 Msa0945610:CDS
TTACTGTTTGCACAGGAGGT+GGG 0.570348 6_3:-24404535 None:intergenic
AAGCAGATAACTCTGGAAGA+AGG 0.573080 6_3:+24405172 Msa0945610:CDS
GAGCATTAGCAACTTTCAGT+GGG 0.573278 6_3:+24406635 Msa0945610:CDS
CTGTCAGTCGTAGTACTCAC+AGG 0.574410 6_3:+24404921 Msa0945610:CDS
AACAGCATTAAAACTCATGA+GGG 0.575438 6_3:-24406922 None:intergenic
TTGATGACAATGGAGGTGAT+TGG 0.580996 6_3:+24404891 Msa0945610:CDS
TTGCCTGAGAAGGACATGCC+GGG 0.581019 6_3:+24404569 Msa0945610:CDS
TCCTCAAGATGATCAATCTG+AGG 0.581434 6_3:+24404709 Msa0945610:CDS
CCGCCACGTTCATCACTCTC+CGG 0.581461 6_3:-24404773 None:intergenic
AACTCTGAAGCAGATAACTC+TGG 0.585499 6_3:+24405165 Msa0945610:CDS
ATCTTTGTCTGAATCTACTG+TGG 0.586024 6_3:+24405390 Msa0945610:CDS
AGTTGCTAATGCTCTCCTGA+CGG 0.586879 6_3:-24406626 None:intergenic
TAATGAAAATGGATTAATGA+TGG 0.587751 6_3:+24405855 Msa0945610:CDS
GAGTTACATTACGTGGCACA+AGG 0.590124 6_3:+24405893 Msa0945610:CDS
TGAGTACTACGACTGACAGC+AGG 0.594924 6_3:-24404917 None:intergenic
AAGGAGATCCCTTAGAATTG+TGG 0.596504 6_3:-24406594 None:intergenic
TTGAATATCCACTACTTACG+CGG 0.598952 6_3:-24406691 None:intergenic
TTGCGCTTGCTGGCACCTGG+AGG 0.601247 6_3:+24405463 Msa0945610:CDS
CTTATGAGTAAATAGCAGAT+GGG 0.601501 6_3:-24406896 None:intergenic
TTCAGCCACCACAATTCTAA+GGG 0.601789 6_3:+24406586 Msa0945610:CDS
GCGGAAATGGCGGCACCTTG+AGG 0.602253 6_3:+24405815 Msa0945610:CDS
AAATGGCGGCACCTTGAGGA+AGG 0.606950 6_3:+24405819 Msa0945610:CDS
CGACCTCGAGTTACATTACG+TGG 0.607023 6_3:+24405886 Msa0945610:CDS
ATGTGCCTAATTTGGAAGAG+TGG 0.608543 6_3:+24404603 Msa0945610:CDS
ACCTCAGATTGATCATCTTG+AGG 0.608905 6_3:-24404710 None:intergenic
AACAAGGAAGAAAGCCAACA+AGG 0.609876 6_3:+24406400 Msa0945610:CDS
TGTGCCTAATTTGGAAGAGT+GGG 0.621322 6_3:+24404604 Msa0945610:CDS
CAATGACATAGTAAATCACT+CGG 0.621478 6_3:+24405291 Msa0945610:CDS
TGTCCAAAATGCGGAAATGG+CGG 0.624434 6_3:+24405805 Msa0945610:CDS
CAAGGACAAGTTGATGACAA+TGG 0.627479 6_3:+24404881 Msa0945610:CDS
ACTGCATCCCTTCCACCTTG+AGG 0.628249 6_3:-24406320 None:intergenic
TTCAAACTCAAGTCCTGCAG+AGG 0.629113 6_3:-24404680 None:intergenic
GAAGGGAAGATGGTTGCTGA+TGG 0.630809 6_3:+24404845 Msa0945610:CDS
TCACGGAACAAAACATCTCA+GGG 0.633868 6_3:+24404508 Msa0945610:CDS
TGAATATCCACTACTTACGC+GGG 0.635815 6_3:-24406690 None:intergenic
GGACGACGACTTCTATATGG+TGG 0.638637 6_3:+24406555 Msa0945610:intron
GGGTACTTCATCCTAAAACA+AGG 0.642784 6_3:+24406384 Msa0945610:CDS
GATGGAATTGATGCATCTCA+AGG 0.646560 6_3:+24404863 Msa0945610:CDS
TGCAAACAGTAAATGTGAAG+AGG 0.648385 6_3:+24404546 Msa0945610:CDS
GAGATCCCTTAGAATTGTGG+TGG 0.651673 6_3:-24406591 None:intergenic
GCTAATGCTCTCCTGACGGG+AGG 0.659205 6_3:-24406622 None:intergenic
AGTGACAGCTACCTTCCTCA+AGG 0.664365 6_3:-24405830 None:intergenic
GTAATGTAACTCGAGGTCGA+CGG 0.674307 6_3:-24405882 None:intergenic
TCATTGCCTTTACCTCAAGG+TGG 0.675530 6_3:+24406308 Msa0945610:CDS
GTGCCACGTAATGTAACTCG+AGG 0.676345 6_3:-24405889 None:intergenic
ATACATGCAGAGAACAATGA+CGG 0.679329 6_3:+24405127 Msa0945610:CDS
ATGAACGTGGCGGTTCAATG+AGG 0.682906 6_3:+24404783 Msa0945610:CDS
GGACAAGTTGATGACAATGG+AGG 0.685424 6_3:+24404884 Msa0945610:CDS
AGCATTGGAACAGGAAACCG+AGG 0.692406 6_3:+24404628 Msa0945610:CDS
TCTGCTTCAGAGTTGCAGAG+AGG 0.697016 6_3:-24405156 None:intergenic
AGTTACATTACGTGGCACAA+GGG 0.712686 6_3:+24405894 Msa0945610:CDS
ATTCCGGAGAGTGATGAACG+TGG 0.742400 6_3:+24404770 Msa0945610:CDS
CCGGAGAGTGATGAACGTGG+CGG 0.753397 6_3:+24404773 Msa0945610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAAAGAACATGATTTA+AGG + chr6_3:24406777-24406796 Msa0945610:three_prime_UTR 15.0%
!!! ATGTTTATCACTTTTTTCTT+AGG - chr6_3:24404824-24404843 None:intergenic 20.0%
!! AAAAAAGTGATAAACATTGA+AGG + chr6_3:24404827-24404846 Msa0945610:CDS 20.0%
!! AAAAAGTGATAAACATTGAA+GGG + chr6_3:24404828-24404847 Msa0945610:CDS 20.0%
!! AAAATTTACTTCAAATAGCA+AGG - chr6_3:24405561-24405580 None:intergenic 20.0%
!!! TAAATTTTTGTATGTGTGAA+GGG + chr6_3:24405573-24405592 Msa0945610:intron 20.0%
!!! TAATGAAAATGGATTAATGA+TGG + chr6_3:24405855-24405874 Msa0945610:CDS 20.0%
!! ATAATCATGTATCTTAAGAA+TGG + chr6_3:24406193-24406212 Msa0945610:intron 20.0%
!!! ATTCTGTTTTTTATTGCTAT+TGG + chr6_3:24406741-24406760 Msa0945610:three_prime_UTR 20.0%
!!! ATCTGTATAAGATTTAGTTT+GGG + chr6_3:24406807-24406826 Msa0945610:three_prime_UTR 20.0%
!! TAATCGATAATTTAAGAGTA+CGG + chr6_3:24406947-24406966 Msa0945610:three_prime_UTR 20.0%
! TAATCAAGATCAACAAGATA+TGG + chr6_3:24404994-24405013 Msa0945610:CDS 25.0%
!!! TATTGAAAATGTTGTTTCCA+AGG + chr6_3:24405096-24405115 Msa0945610:CDS 25.0%
!! GTAAATTTTTGTATGTGTGA+AGG + chr6_3:24405572-24405591 Msa0945610:intron 25.0%
! TCATAGAGATTAGAAGAAAT+AGG - chr6_3:24405659-24405678 None:intergenic 25.0%
! TTAATTATTTGCATTCCAGA+TGG + chr6_3:24405728-24405747 Msa0945610:intron 25.0%
! TGAGTATATTATGAGATACT+GGG + chr6_3:24405917-24405936 Msa0945610:intron 25.0%
! ATAAAATGACTAGCATACTA+GGG - chr6_3:24405969-24405988 None:intergenic 25.0%
! TATAAAATGACTAGCATACT+AGG - chr6_3:24405970-24405989 None:intergenic 25.0%
! TTGTTGAATACTAGATTCAT+GGG + chr6_3:24406029-24406048 Msa0945610:intron 25.0%
! GATTATAATGTATTTCACAC+CGG + chr6_3:24406091-24406110 Msa0945610:intron 25.0%
!!! AGATGTTGATTTTCATTTGT+AGG + chr6_3:24406169-24406188 Msa0945610:intron 25.0%
! TACTTAATAACACACTTTGT+AGG + chr6_3:24406534-24406553 Msa0945610:intron 25.0%
! AATAAAAAACAGAATTGAGG+GGG - chr6_3:24406736-24406755 None:intergenic 25.0%
! CAATAAAAAACAGAATTGAG+GGG - chr6_3:24406737-24406756 None:intergenic 25.0%
! GCAATAAAAAACAGAATTGA+GGG - chr6_3:24406738-24406757 None:intergenic 25.0%
! AGCAATAAAAAACAGAATTG+AGG - chr6_3:24406739-24406758 None:intergenic 25.0%
!!! TGTTTTTTATTGCTATTGGA+AGG + chr6_3:24406745-24406764 Msa0945610:three_prime_UTR 25.0%
! CATCTGTATAAGATTTAGTT+TGG + chr6_3:24406806-24406825 Msa0945610:three_prime_UTR 25.0%
! ACATGATTAACATCATGATT+TGG + chr6_3:24406841-24406860 Msa0945610:three_prime_UTR 25.0%
! CATGATTAACATCATGATTT+GGG + chr6_3:24406842-24406861 Msa0945610:three_prime_UTR 25.0%
CATTGCTCTAACTTATACTT+TGG + chr6_3:24404475-24404494 Msa0945610:CDS 30.0%
ATCTTGTTGATCTTGATTAC+TGG - chr6_3:24404993-24405012 None:intergenic 30.0%
GATATGGAAGAAAACATTGA+TGG + chr6_3:24405010-24405029 Msa0945610:CDS 30.0%
CAATGACATAGTAAATCACT+CGG + chr6_3:24405291-24405310 Msa0945610:CDS 30.0%
ATTGTTACTAGTTAGTTGCA+CGG + chr6_3:24405513-24405532 Msa0945610:intron 30.0%
GTGAGTATATTATGAGATAC+TGG + chr6_3:24405916-24405935 Msa0945610:intron 30.0%
TAAAATGACTAGCATACTAG+GGG - chr6_3:24405968-24405987 None:intergenic 30.0%
GTTGTTGAATACTAGATTCA+TGG + chr6_3:24406028-24406047 Msa0945610:intron 30.0%
TGGTTAAACCATTTACAAGA+TGG + chr6_3:24406213-24406232 Msa0945610:intron 30.0%
GGTTAAACCATTTACAAGAT+GGG + chr6_3:24406214-24406233 Msa0945610:intron 30.0%
ATATCATCCCATCTTGTAAA+TGG - chr6_3:24406224-24406243 None:intergenic 30.0%
!! AGTAGTGGATATTCAAAACT+TGG + chr6_3:24406698-24406717 Msa0945610:exon 30.0%
! AAAGAACATGATTTAAGGCA+TGG + chr6_3:24406782-24406801 Msa0945610:three_prime_UTR 30.0%
!! GATTTAGTTTGGGTGATATA+TGG + chr6_3:24406817-24406836 Msa0945610:three_prime_UTR 30.0%
!! TAACATCATGATTTGGGTTT+TGG + chr6_3:24406848-24406867 Msa0945610:three_prime_UTR 30.0%
CTTATGAGTAAATAGCAGAT+GGG - chr6_3:24406899-24406918 None:intergenic 30.0%
ACTTATGAGTAAATAGCAGA+TGG - chr6_3:24406900-24406919 None:intergenic 30.0%
AACAGCATTAAAACTCATGA+GGG - chr6_3:24406925-24406944 None:intergenic 30.0%
TAACAGCATTAAAACTCATG+AGG - chr6_3:24406926-24406945 None:intergenic 30.0%
TGCTCTAACTTATACTTTGG+AGG + chr6_3:24404478-24404497 Msa0945610:CDS 35.0%
TTCACATTTACTGTTTGCAC+AGG - chr6_3:24404545-24404564 None:intergenic 35.0%
TGCAAACAGTAAATGTGAAG+AGG + chr6_3:24404546-24404565 Msa0945610:CDS 35.0%
TGAAACTCTTCCAGAAATTC+CGG + chr6_3:24404754-24404773 Msa0945610:CDS 35.0%
GATAAACATTGAAGGGAAGA+TGG + chr6_3:24404835-24404854 Msa0945610:CDS 35.0%
AGATGATAAGACTTCAAACC+TGG + chr6_3:24405045-24405064 Msa0945610:CDS 35.0%
TATGCTTCTCATCATCACTT+TGG - chr6_3:24405078-24405097 None:intergenic 35.0%
TGCATGTATCATATCATCCT+TGG - chr6_3:24405116-24405135 None:intergenic 35.0%
ATACATGCAGAGAACAATGA+CGG + chr6_3:24405127-24405146 Msa0945610:CDS 35.0%
AAATTTGCACTGCTATCTTC+AGG - chr6_3:24405241-24405260 None:intergenic 35.0%
TGAAGATAGCAGTGCAAATT+TGG + chr6_3:24405240-24405259 Msa0945610:CDS 35.0%
ATCTTTGTCTGAATCTACTG+TGG + chr6_3:24405390-24405409 Msa0945610:CDS 35.0%
CAGAATGTTCTTCTCCAAAT+GGG + chr6_3:24405439-24405458 Msa0945610:CDS 35.0%
TTACTTCAAATAGCAAGGAC+AGG - chr6_3:24405556-24405575 None:intergenic 35.0%
AATAGCATATTGTGCTTCGT+AGG - chr6_3:24405688-24405707 None:intergenic 35.0%
TTCACTGTTACTGCTGAAAT+TGG + chr6_3:24405772-24405791 Msa0945610:CDS 35.0%
! AGGATTTTCTGTCCAAAATG+CGG + chr6_3:24405796-24405815 Msa0945610:CDS 35.0%
GCTGTCACTGTTAATGAAAA+TGG + chr6_3:24405844-24405863 Msa0945610:CDS 35.0%
ATCAGATCTTATATCTCTCC+AGG - chr6_3:24406118-24406137 None:intergenic 35.0%
CATCTATCTAAGAGAACTTG+CGG - chr6_3:24406154-24406173 None:intergenic 35.0%
!!! TTGGCTTTCTTCCTTGTTTT+AGG - chr6_3:24406398-24406417 None:intergenic 35.0%
AAACACACAAACAACCTTGT+TGG - chr6_3:24406417-24406436 None:intergenic 35.0%
TTGAATATCCACTACTTACG+CGG - chr6_3:24406694-24406713 None:intergenic 35.0%
!!! TGGGTTTTGGTTATTTCTTC+TGG + chr6_3:24406861-24406880 Msa0945610:three_prime_UTR 35.0%
TTCACGGAACAAAACATCTC+AGG + chr6_3:24404507-24404526 Msa0945610:CDS 40.0%
TCACGGAACAAAACATCTCA+GGG + chr6_3:24404508-24404527 Msa0945610:CDS 40.0%
ACATTTACTGTTTGCACAGG+AGG - chr6_3:24404542-24404561 None:intergenic 40.0%
GGGTTTGAATGTGCCTAATT+TGG + chr6_3:24404595-24404614 Msa0945610:CDS 40.0%
ATGTGCCTAATTTGGAAGAG+TGG + chr6_3:24404603-24404622 Msa0945610:CDS 40.0%
TGTGCCTAATTTGGAAGAGT+GGG + chr6_3:24404604-24404623 Msa0945610:CDS 40.0%
ATCGGAATTTGCATTGTCCT+CGG - chr6_3:24404648-24404667 None:intergenic 40.0%
CAGAGGAAGGATTCTTGAAT+CGG - chr6_3:24404666-24404685 None:intergenic 40.0%
TCCTCAAGATGATCAATCTG+AGG + chr6_3:24404709-24404728 Msa0945610:CDS 40.0%
ACCTCAGATTGATCATCTTG+AGG - chr6_3:24404713-24404732 None:intergenic 40.0%
! CAAGATGATCAATCTGAGGT+TGG + chr6_3:24404713-24404732 Msa0945610:CDS 40.0%
! TGATCAATCTGAGGTTGGTT+CGG + chr6_3:24404718-24404737 Msa0945610:CDS 40.0%
GATGGAATTGATGCATCTCA+AGG + chr6_3:24404863-24404882 Msa0945610:CDS 40.0%
!! CAAGGACAAGTTGATGACAA+TGG + chr6_3:24404881-24404900 Msa0945610:CDS 40.0%
! TTGATGACAATGGAGGTGAT+TGG + chr6_3:24404891-24404910 Msa0945610:CDS 40.0%
!! AACTCTGAAGCAGATAACTC+TGG + chr6_3:24405165-24405184 Msa0945610:CDS 40.0%
! AAGCAGATAACTCTGGAAGA+AGG + chr6_3:24405172-24405191 Msa0945610:CDS 40.0%
TGCAAAGTCACCAGTTATAC+AGG - chr6_3:24405416-24405435 None:intergenic 40.0%
GCAGAATGTTCTTCTCCAAA+TGG + chr6_3:24405438-24405457 Msa0945610:CDS 40.0%
GTAACAATTACCTGTGCAAC+TGG - chr6_3:24405501-24405520 None:intergenic 40.0%
ATGACACTTGAGTATCCATC+TGG - chr6_3:24405746-24405765 None:intergenic 40.0%
CTGTTACTGCTGAAATTGGA+AGG + chr6_3:24405776-24405795 Msa0945610:CDS 40.0%
TTCTGTCCAAAATGCGGAAA+TGG + chr6_3:24405802-24405821 Msa0945610:CDS 40.0%
AGTTACATTACGTGGCACAA+GGG + chr6_3:24405894-24405913 Msa0945610:CDS 40.0%
AACGAGTTCTTTCAGTCACT+TGG + chr6_3:24405994-24406013 Msa0945610:intron 40.0%
ATCTTATATCTCTCCAGGAC+CGG - chr6_3:24406113-24406132 None:intergenic 40.0%
TTCTCATTGCCTTTACCTCA+AGG + chr6_3:24406305-24406324 Msa0945610:CDS 40.0%
! TTTGAGGCAGTTGATCTTCA+CGG - chr6_3:24406364-24406383 None:intergenic 40.0%
TGAAGATCAACTGCCTCAAA+GGG + chr6_3:24406364-24406383 Msa0945610:CDS 40.0%
! TTAGGATGAAGTACCCTTTG+AGG - chr6_3:24406380-24406399 None:intergenic 40.0%
GGGTACTTCATCCTAAAACA+AGG + chr6_3:24406384-24406403 Msa0945610:CDS 40.0%
AACAAGGAAGAAAGCCAACA+AGG + chr6_3:24406400-24406419 Msa0945610:CDS 40.0%
TTCAGCCACCACAATTCTAA+GGG + chr6_3:24406586-24406605 Msa0945610:CDS 40.0%
AAGGAGATCCCTTAGAATTG+TGG - chr6_3:24406597-24406616 None:intergenic 40.0%
! AGAGCATTAGCAACTTTCAG+TGG + chr6_3:24406634-24406653 Msa0945610:CDS 40.0%
GAGCATTAGCAACTTTCAGT+GGG + chr6_3:24406635-24406654 Msa0945610:CDS 40.0%
CGTGAGTAGTGATTGTCATT+TGG - chr6_3:24406670-24406689 None:intergenic 40.0%
TGAATATCCACTACTTACGC+GGG - chr6_3:24406693-24406712 None:intergenic 40.0%
GTGGATATTCAAAACTTGGC+TGG + chr6_3:24406702-24406721 Msa0945610:exon 40.0%
!! GTCAAGTTTGCTAGGGTTAC+TGG + chr6_3:24404416-24404435 Msa0945610:CDS 45.0%
! ACTTTGGAGGCTCAGATTCA+CGG + chr6_3:24404491-24404510 Msa0945610:CDS 45.0%
TTACTGTTTGCACAGGAGGT+GGG - chr6_3:24404538-24404557 None:intergenic 45.0%
TTTACTGTTTGCACAGGAGG+TGG - chr6_3:24404539-24404558 None:intergenic 45.0%
GCTTCCCACTCTTCCAAATT+AGG - chr6_3:24404611-24404630 None:intergenic 45.0%
! TTTGGAAGAGTGGGAAGCAT+TGG + chr6_3:24404613-24404632 Msa0945610:CDS 45.0%
TTCAAGAATCCTTCCTCTGC+AGG + chr6_3:24404667-24404686 Msa0945610:CDS 45.0%
TTCAAACTCAAGTCCTGCAG+AGG - chr6_3:24404683-24404702 None:intergenic 45.0%
TCATCACTCTCCGGAATTTC+TGG - chr6_3:24404767-24404786 None:intergenic 45.0%
!! GGACAAGTTGATGACAATGG+AGG + chr6_3:24404884-24404903 Msa0945610:CDS 45.0%
CTATCTTCAGGAGACAGACT+TGG - chr6_3:24405229-24405248 None:intergenic 45.0%
ATGATGCCAGTGAGCAAAGT+TGG + chr6_3:24405359-24405378 Msa0945610:CDS 45.0%
AAGCATCCAACTTTGCTCAC+TGG - chr6_3:24405368-24405387 None:intergenic 45.0%
TCTACTGTGGCCTGTATAAC+TGG + chr6_3:24405403-24405422 Msa0945610:CDS 45.0%
TTCAGCAGTAACAGTGAAGC+AGG - chr6_3:24405770-24405789 None:intergenic 45.0%
TGTCCAAAATGCGGAAATGG+CGG + chr6_3:24405805-24405824 Msa0945610:CDS 45.0%
TAATGTAACTCGAGGTCGAC+GGG - chr6_3:24405884-24405903 None:intergenic 45.0%
GTAATGTAACTCGAGGTCGA+CGG - chr6_3:24405885-24405904 None:intergenic 45.0%
GAGTTACATTACGTGGCACA+AGG + chr6_3:24405893-24405912 Msa0945610:CDS 45.0%
AATGTATTTCACACCGGTCC+TGG + chr6_3:24406097-24406116 Msa0945610:intron 45.0%
TCATTGCCTTTACCTCAAGG+TGG + chr6_3:24406308-24406327 Msa0945610:CDS 45.0%
GTGAAGATCAACTGCCTCAA+AGG + chr6_3:24406363-24406382 Msa0945610:CDS 45.0%
AAAGAACACCACACTCTCGT+GGG - chr6_3:24406467-24406486 None:intergenic 45.0%
TAAAGAACACCACACTCTCG+TGG - chr6_3:24406468-24406487 None:intergenic 45.0%
GTAGGACGACGACTTCTATA+TGG + chr6_3:24406552-24406571 Msa0945610:intron 45.0%
CTTCAGCCACCACAATTCTA+AGG + chr6_3:24406585-24406604 Msa0945610:CDS 45.0%
GAGATCCCTTAGAATTGTGG+TGG - chr6_3:24406594-24406613 None:intergenic 45.0%
AGTTGCTAATGCTCTCCTGA+CGG - chr6_3:24406629-24406648 None:intergenic 45.0%
!! TAATTAATAAATAATAGATT+TGG + chr6_3:24406062-24406081 Msa0945610:intron 5.0%
TGTGAAGAGGTTGCCTGAGA+AGG + chr6_3:24404559-24404578 Msa0945610:CDS 50.0%
!! AGAGTGGGAAGCATTGGAAC+AGG + chr6_3:24404619-24404638 Msa0945610:CDS 50.0%
! AGCATTGGAACAGGAAACCG+AGG + chr6_3:24404628-24404647 Msa0945610:CDS 50.0%
AACTCAAGTCCTGCAGAGGA+AGG - chr6_3:24404679-24404698 None:intergenic 50.0%
ATTCCGGAGAGTGATGAACG+TGG + chr6_3:24404770-24404789 Msa0945610:CDS 50.0%
ATGAACGTGGCGGTTCAATG+AGG + chr6_3:24404783-24404802 Msa0945610:CDS 50.0%
GAAGGGAAGATGGTTGCTGA+TGG + chr6_3:24404845-24404864 Msa0945610:CDS 50.0%
TGAGTACTACGACTGACAGC+AGG - chr6_3:24404920-24404939 None:intergenic 50.0%
CTGTCAGTCGTAGTACTCAC+AGG + chr6_3:24404921-24404940 Msa0945610:CDS 50.0%
! CATCACTTTGGTGCACATCC+AGG - chr6_3:24405066-24405085 None:intergenic 50.0%
CTGCTTCAGAGTTGCAGAGA+GGG - chr6_3:24405158-24405177 None:intergenic 50.0%
TCTGCTTCAGAGTTGCAGAG+AGG - chr6_3:24405159-24405178 None:intergenic 50.0%
CATCAGCAGCTTCACTTGAC+TGG - chr6_3:24405327-24405346 None:intergenic 50.0%
TGGTGTATCTGTGATCCTCC+AGG - chr6_3:24405481-24405500 None:intergenic 50.0%
CACAGATACACCAGTTGCAC+AGG + chr6_3:24405488-24405507 Msa0945610:CDS 50.0%
AGTGACAGCTACCTTCCTCA+AGG - chr6_3:24405833-24405852 None:intergenic 50.0%
CGACCTCGAGTTACATTACG+TGG + chr6_3:24405886-24405905 Msa0945610:CDS 50.0%
GTGCCACGTAATGTAACTCG+AGG - chr6_3:24405892-24405911 None:intergenic 50.0%
TGCCTTTACCTCAAGGTGGA+AGG + chr6_3:24406312-24406331 Msa0945610:CDS 50.0%
GCCTTTACCTCAAGGTGGAA+GGG + chr6_3:24406313-24406332 Msa0945610:CDS 50.0%
TCCCTTCCACCTTGAGGTAA+AGG - chr6_3:24406317-24406336 None:intergenic 50.0%
GGACGACGACTTCTATATGG+TGG + chr6_3:24406555-24406574 Msa0945610:intron 50.0%
GTTGCTAATGCTCTCCTGAC+GGG - chr6_3:24406628-24406647 None:intergenic 50.0%
GTTGCCTGAGAAGGACATGC+CGG + chr6_3:24404568-24404587 Msa0945610:CDS 55.0%
TTGCCTGAGAAGGACATGCC+GGG + chr6_3:24404569-24404588 Msa0945610:CDS 55.0%
TGAGAAGGACATGCCGGGAT+GGG + chr6_3:24404574-24404593 Msa0945610:CDS 55.0%
GGCACATTCAAACCCCATCC+CGG - chr6_3:24404590-24404609 None:intergenic 55.0%
CCAGCAAGCGCAAACCCATT+TGG - chr6_3:24405456-24405475 None:intergenic 55.0%
! CCAAATGGGTTTGCGCTTGC+TGG + chr6_3:24405453-24405472 Msa0945610:CDS 55.0%
! GTGCCGCCATTTCCGCATTT+TGG - chr6_3:24405811-24405830 None:intergenic 55.0%
AAATGGCGGCACCTTGAGGA+AGG + chr6_3:24405819-24405838 Msa0945610:CDS 55.0%
ACTGCATCCCTTCCACCTTG+AGG - chr6_3:24406323-24406342 None:intergenic 55.0%
GTTCGTTTCCCACGAGAGTG+TGG + chr6_3:24406456-24406475 Msa0945610:intron 55.0%
CATCCCGGCATGTCCTTCTC+AGG - chr6_3:24404575-24404594 None:intergenic 60.0%
CTGAGAAGGACATGCCGGGA+TGG + chr6_3:24404573-24404592 Msa0945610:CDS 60.0%
GAGAAGGACATGCCGGGATG+GGG + chr6_3:24404575-24404594 Msa0945610:CDS 60.0%
CCGCCACGTTCATCACTCTC+CGG - chr6_3:24404776-24404795 None:intergenic 60.0%
CCGGAGAGTGATGAACGTGG+CGG + chr6_3:24404773-24404792 Msa0945610:CDS 60.0%
GCTAATGCTCTCCTGACGGG+AGG - chr6_3:24406625-24406644 None:intergenic 60.0%
ACTCACGCCCGCGTAAGTAG+TGG + chr6_3:24406683-24406702 Msa0945610:CDS 60.0%
! GGTTTGCGCTTGCTGGCACC+TGG + chr6_3:24405460-24405479 Msa0945610:CDS 65.0%
! TTGCGCTTGCTGGCACCTGG+AGG + chr6_3:24405463-24405482 Msa0945610:CDS 65.0%
GCGGAAATGGCGGCACCTTG+AGG + chr6_3:24405815-24405834 Msa0945610:CDS 65.0%
CTCCTTTCCAGCCTCCCGTC+AGG + chr6_3:24406611-24406630 Msa0945610:CDS 65.0%
CTCCTGACGGGAGGCTGGAA+AGG - chr6_3:24406616-24406635 None:intergenic 65.0%
ATGCTCTCCTGACGGGAGGC+TGG - chr6_3:24406621-24406640 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 24404413 24406987 24404413 ID=Msa0945610;Name=Msa0945610
chr6_3 mRNA 24404413 24406987 24404413 ID=Msa0945610-mRNA-1;Parent=Msa0945610;Name=Msa0945610-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|1|0.75|1|1|1|4|285|509
chr6_3 exon 24404413 24405509 24404413 ID=Msa0945610-mRNA-1:exon:6992;Parent=Msa0945610-mRNA-1
chr6_3 exon 24405747 24405915 24405747 ID=Msa0945610-mRNA-1:exon:6993;Parent=Msa0945610-mRNA-1
chr6_3 exon 24406305 24406421 24406305 ID=Msa0945610-mRNA-1:exon:6994;Parent=Msa0945610-mRNA-1
chr6_3 exon 24406556 24406987 24406556 ID=Msa0945610-mRNA-1:exon:6995;Parent=Msa0945610-mRNA-1
chr6_3 CDS 24404413 24405509 24404413 ID=Msa0945610-mRNA-1:cds;Parent=Msa0945610-mRNA-1
chr6_3 CDS 24405747 24405915 24405747 ID=Msa0945610-mRNA-1:cds;Parent=Msa0945610-mRNA-1
chr6_3 CDS 24406305 24406421 24406305 ID=Msa0945610-mRNA-1:cds;Parent=Msa0945610-mRNA-1
chr6_3 CDS 24406556 24406702 24406556 ID=Msa0945610-mRNA-1:cds;Parent=Msa0945610-mRNA-1
chr6_3 three_prime_UTR 24406703 24406987 24406703 ID=Msa0945610-mRNA-1:three_prime_utr;Parent=Msa0945610-mRNA-1
Gene Sequence

>Msa0945610

GTTGTCAAGTTTGCTAGGGTTACTGGTGATCTACAGACTCTATCAGATGTTGATATCAAACTCATTGCTCTAACTTATACTTTGGAGGCTCAGATTCACGGAACAAAACATCTCAGGGACAGCCCACCTCCTGTGCAAACAGTAAATGTGAAGAGGTTGCCTGAGAAGGACATGCCGGGATGGGGTTTGAATGTGCCTAATTTGGAAGAGTGGGAAGCATTGGAACAGGAAACCGAGGACAATGCAAATTCCGATTCAAGAATCCTTCCTCTGCAGGACTTGAGTTTGAACATTCTTCCTCAAGATGATCAATCTGAGGTTGGTTCGGTAGAGCATACTGCTGAAACTCTTCCAGAAATTCCGGAGAGTGATGAACGTGGCGGTTCAATGAGGCGAAAGAATTATATTCCTAAGAAAAAAGTGATAAACATTGAAGGGAAGATGGTTGCTGATGGAATTGATGCATCTCAAGGACAAGTTGATGACAATGGAGGTGATTGGATGCCTGCTGTCAGTCGTAGTACTCACAGGAGATTTCTAAGAAGAAAAGCTAGACGTGAGCACTATGATGCATTATCCAGTAATCAAGATCAACAAGATATGGAAGAAAACATTGATGGTAGTGTTTGTGAAGATGATAAGACTTCAAACCTGGATGTGCACCAAAGTGATGATGAGAAGCATATTGAAAATGTTGTTTCCAAGGATGATATGATACATGCAGAGAACAATGACGGTGAAACCCTCTCTGCAACTCTGAAGCAGATAACTCTGGAAGAAGGTTCACTTGAAGTTCTTAACGAAGAGCACAAACCAAGTCTGTCTCCTGAAGATAGCAGTGCAAATTTGGCTGCTAAATCATGTGAGACAGATTCAGTCAATGACATAGTAAATCACTCGGACATTGCAAGCCAGTCAAGTGAAGCTGCTGATGTTTCATATGCAGATGATGCCAGTGAGCAAAGTTGGATGCTTAGATCTTTGTCTGAATCTACTGTGGCCTGTATAACTGGTGACTTTGCAATGCAGAATGTTCTTCTCCAAATGGGTTTGCGCTTGCTGGCACCTGGAGGATCACAGATACACCAGTTGCACAGATGGATACTCAAGTGTCATGCCTGCTTCACTGTTACTGCTGAAATTGGAAGGATTTTCTGTCCAAAATGCGGAAATGGCGGCACCTTGAGGAAGGTAGCTGTCACTGTTAATGAAAATGGATTAATGATGGCAGCCCGTCGACCTCGAGTTACATTACGTGGCACAAGGTTCTCATTGCCTTTACCTCAAGGTGGAAGGGATGCAGTCACAAAAAATATTATTCTCCGTGAAGATCAACTGCCTCAAAGGGTACTTCATCCTAAAACAAGGAAGAAAGCCAACAAGGACGACGACTTCTATATGGTGGACAATGTCTTCAGCCACCACAATTCTAAGGGATCTCCTTTCCAGCCTCCCGTCAGGAGAGCATTAGCAACTTTCAGTGGGAAGAGAAATCCAAATGACAATCACTACTCACGCCCGCGTAAGTAG

Protein sequence

>Msa0945610

VVKFARVTGDLQTLSDVDIKLIALTYTLEAQIHGTKHLRDSPPPVQTVNVKRLPEKDMPGWGLNVPNLEEWEALEQETEDNANSDSRILPLQDLSLNILPQDDQSEVGSVEHTAETLPEIPESDERGGSMRRKNYIPKKKVINIEGKMVADGIDASQGQVDDNGGDWMPAVSRSTHRRFLRRKARREHYDALSSNQDQQDMEENIDGSVCEDDKTSNLDVHQSDDEKHIENVVSKDDMIHAENNDGETLSATLKQITLEEGSLEVLNEEHKPSLSPEDSSANLAAKSCETDSVNDIVNHSDIASQSSEAADVSYADDASEQSWMLRSLSESTVACITGDFAMQNVLLQMGLRLLAPGGSQIHQLHRWILKCHACFTVTAEIGRIFCPKCGNGGTLRKVAVTVNENGLMMAARRPRVTLRGTRFSLPLPQGGRDAVTKNIILREDQLPQRVLHPKTRKKANKDDDFYMVDNVFSHHNSKGSPFQPPVRRALATFSGKRNPNDNHYSRPRK*