Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1348590 | XP_024635216.1 | 95.556 | 180 | 8 | 0 | 1 | 180 | 1 | 180 | 3.95e-121 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1348590 | G7J2U4 | 95.833 | 168 | 7 | 0 | 1 | 168 | 1 | 168 | 1.04e-112 | 331 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0326110 | Msa1348590 | 0.803795 | 2.939614e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1348590 | MtrunA17_Chr3g0139131 | 87.333 | 150 | 19 | 0 | 1 | 150 | 1 | 150 | 4.56e-90 | 261 |
| Msa1348590 | MtrunA17_Chr3g0139121 | 65.116 | 215 | 54 | 4 | 1 | 200 | 21 | 229 | 1.68e-80 | 255 |
| Msa1348590 | MtrunA17_Chr8g0389021 | 40.909 | 176 | 94 | 2 | 2 | 169 | 4 | 177 | 3.30e-42 | 141 |
| Msa1348590 | MtrunA17_Chr8g0389011 | 39.151 | 212 | 112 | 4 | 2 | 198 | 33 | 242 | 1.93e-41 | 149 |
| Msa1348590 | MtrunA17_Chr3g0139101 | 59.504 | 121 | 48 | 1 | 81 | 201 | 6 | 125 | 5.30e-41 | 137 |
| Msa1348590 | MtrunA17_Chr1g0147731 | 59.292 | 113 | 45 | 1 | 67 | 179 | 10 | 121 | 2.28e-38 | 139 |
| Msa1348590 | MtrunA17_Chr6g0488761 | 39.175 | 194 | 92 | 4 | 5 | 182 | 8 | 191 | 9.01e-36 | 132 |
| Msa1348590 | MtrunA17_Chr2g0334261 | 41.111 | 180 | 84 | 2 | 13 | 177 | 17 | 189 | 1.85e-35 | 131 |
| Msa1348590 | MtrunA17_Chr2g0329861 | 31.515 | 165 | 100 | 4 | 16 | 170 | 13 | 174 | 2.89e-21 | 86.7 |
| Msa1348590 | MtrunA17_Chr8g0343121 | 37.500 | 112 | 65 | 2 | 16 | 126 | 19 | 126 | 1.44e-18 | 78.2 |
| Msa1348590 | MtrunA17_Chr1g0150761 | 25.843 | 178 | 109 | 3 | 13 | 177 | 13 | 180 | 2.08e-12 | 65.1 |
| Msa1348590 | MtrunA17_Chr1g0147721 | 52.273 | 44 | 21 | 0 | 6 | 49 | 10 | 53 | 4.34e-12 | 59.3 |
| Msa1348590 | MtrunA17_Chr4g0070941 | 28.649 | 185 | 101 | 6 | 1 | 169 | 1 | 170 | 4.08e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1348590 | AT2G24370.1 | 47.396 | 192 | 89 | 3 | 1 | 180 | 1 | 192 | 7.46e-54 | 183 |
| Msa1348590 | AT4G31230.1 | 46.927 | 179 | 86 | 1 | 9 | 178 | 13 | 191 | 8.83e-51 | 175 |
| Msa1348590 | AT5G35380.1 | 44.654 | 159 | 79 | 2 | 14 | 172 | 12 | 161 | 8.36e-38 | 138 |
| Msa1348590 | AT3G20200.3 | 43.353 | 173 | 87 | 2 | 6 | 177 | 9 | 171 | 3.33e-37 | 137 |
| Msa1348590 | AT3G20200.1 | 43.353 | 173 | 87 | 2 | 6 | 177 | 9 | 171 | 3.40e-37 | 137 |
| Msa1348590 | AT3G20200.2 | 43.353 | 173 | 87 | 2 | 6 | 177 | 9 | 171 | 3.87e-37 | 137 |
| Msa1348590 | AT3G20200.4 | 43.353 | 173 | 87 | 2 | 6 | 177 | 9 | 171 | 3.87e-37 | 137 |
| Msa1348590 | AT2G07020.1 | 43.478 | 161 | 81 | 2 | 14 | 174 | 14 | 164 | 1.58e-35 | 132 |
| Msa1348590 | AT1G78940.3 | 40.541 | 185 | 95 | 4 | 1 | 178 | 1 | 177 | 6.48e-35 | 130 |
| Msa1348590 | AT1G78940.2 | 40.541 | 185 | 95 | 4 | 1 | 178 | 1 | 177 | 6.83e-35 | 130 |
| Msa1348590 | AT5G20310.1 | 40.462 | 173 | 101 | 2 | 11 | 182 | 8 | 179 | 1.61e-33 | 123 |
| Msa1348590 | AT1G16760.1 | 39.205 | 176 | 97 | 4 | 1 | 172 | 1 | 170 | 1.77e-32 | 123 |
| Msa1348590 | AT1G16760.2 | 39.205 | 176 | 97 | 4 | 1 | 172 | 1 | 170 | 2.11e-32 | 123 |
| Msa1348590 | AT5G12000.1 | 34.078 | 179 | 97 | 5 | 1 | 171 | 1 | 166 | 2.25e-27 | 108 |
| Msa1348590 | AT1G17540.1 | 34.146 | 164 | 100 | 3 | 5 | 168 | 7 | 162 | 4.35e-26 | 105 |
| Msa1348590 | AT1G78940.1 | 47.000 | 100 | 52 | 1 | 79 | 178 | 8 | 106 | 2.88e-24 | 100 |
| Msa1348590 | AT4G31230.2 | 51.724 | 87 | 42 | 0 | 92 | 178 | 6 | 92 | 7.84e-24 | 98.6 |
| Msa1348590 | AT1G72760.3 | 33.121 | 157 | 92 | 3 | 13 | 168 | 25 | 169 | 3.06e-23 | 97.1 |
| Msa1348590 | AT1G72760.2 | 31.515 | 165 | 100 | 3 | 5 | 168 | 17 | 169 | 3.30e-23 | 97.1 |
| Msa1348590 | AT1G72760.1 | 31.515 | 165 | 100 | 3 | 5 | 168 | 8 | 160 | 4.00e-23 | 96.7 |
| Msa1348590 | AT5G26150.2 | 33.146 | 178 | 101 | 5 | 1 | 171 | 4 | 170 | 3.42e-22 | 94.0 |
| Msa1348590 | AT5G26150.1 | 32.584 | 178 | 97 | 6 | 1 | 171 | 4 | 165 | 7.93e-20 | 87.0 |
| Msa1348590 | AT5G12000.2 | 41.026 | 78 | 43 | 1 | 97 | 171 | 4 | 81 | 6.11e-13 | 67.0 |
| Msa1348590 | AT2G19410.2 | 29.379 | 177 | 107 | 6 | 4 | 163 | 15 | 190 | 3.66e-12 | 65.1 |
Find 38 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAGGCAACAGATATTTC+TGG | 0.253828 | tig0010471:-11988 | Msa1348590:CDS |
| ACCCCATGTTTGTGTCTAAT+TGG | 0.314657 | tig0010471:+11827 | None:intergenic |
| CGTGTACAGAAGACGCAATA+TGG | 0.328790 | tig0010471:+12470 | None:intergenic |
| TCTCATCCATGTCAAAATTC+TGG | 0.338507 | tig0010471:-12585 | Msa1348590:CDS |
| GGAATTGAGCATCTGATTCT+TGG | 0.344466 | tig0010471:-12194 | Msa1348590:CDS |
| GGGTTGGAACAAAGTGTAAA+AGG | 0.352952 | tig0010471:-11808 | Msa1348590:CDS |
| AAGAAGAAGGATGGTGTAAA+TGG | 0.376033 | tig0010471:-12701 | Msa1348590:CDS |
| TTCTGCACAGTCTATGTGAT+TGG | 0.411025 | tig0010471:-11940 | Msa1348590:CDS |
| TTTACACCATCCTTCTTCTT+CGG | 0.416047 | tig0010471:+12704 | None:intergenic |
| ACATAGACTGTGCAGAAATC+TGG | 0.418057 | tig0010471:+11946 | None:intergenic |
| TTAGCATTTATCTCTGCATC+TGG | 0.421279 | tig0010471:+12560 | None:intergenic |
| AGAGCCACCGTGCATTCAAA+TGG | 0.431736 | tig0010471:-12646 | Msa1348590:CDS |
| ATTGAATATGCTTCTCAAGT+AGG | 0.447904 | tig0010471:-12215 | Msa1348590:CDS |
| ATGTATAGAGCATCTGCATC+TGG | 0.463767 | tig0010471:+12500 | None:intergenic |
| TATTGTGATAGTAGTTTGAC+TGG | 0.467613 | tig0010471:+11852 | None:intergenic |
| ATTTCTGGAACAGTGTCAAA+AGG | 0.478555 | tig0010471:-11973 | Msa1348590:CDS |
| TTTCTGGAACAGTGTCAAAA+GGG | 0.518121 | tig0010471:-11972 | Msa1348590:CDS |
| AATGTCGTTGCCGAAGAAGA+AGG | 0.530060 | tig0010471:-12714 | Msa1348590:CDS |
| CAATAGCCCATTTGAATGCA+CGG | 0.539826 | tig0010471:+12639 | None:intergenic |
| GAGCCACCGTGCATTCAAAT+GGG | 0.541798 | tig0010471:-12645 | Msa1348590:CDS |
| TAGTTTGACTGGCTTGCAGA+GGG | 0.543866 | tig0010471:+11863 | None:intergenic |
| GTGTACAGAAGACGCAATAT+GGG | 0.555760 | tig0010471:+12471 | None:intergenic |
| AGTGGCAGTAAACAACGAAA+AGG | 0.556022 | tig0010471:-12669 | Msa1348590:CDS |
| ATTAGACACAAACATGGGGT+TGG | 0.583905 | tig0010471:-11824 | Msa1348590:CDS |
| AGAAGATGCAGATGTATCAA+AGG | 0.592255 | tig0010471:-12243 | Msa1348590:CDS |
| GTAGTTTGACTGGCTTGCAG+AGG | 0.597486 | tig0010471:+11862 | None:intergenic |
| GACCAATTAGACACAAACAT+GGG | 0.616986 | tig0010471:-11829 | Msa1348590:CDS |
| TGGCTAAGATAAAATGCAAG+AGG | 0.622616 | tig0010471:-12274 | Msa1348590:intron |
| ACAGTCTATGTGATTGGCAA+TGG | 0.635683 | tig0010471:-11934 | Msa1348590:CDS |
| TCGTTGCCGAAGAAGAAGGA+TGG | 0.638217 | tig0010471:-12710 | Msa1348590:CDS |
| GGCTAAGATAAAATGCAAGA+GGG | 0.652481 | tig0010471:-12273 | Msa1348590:intron |
| AGACCAATTAGACACAAACA+TGG | 0.652810 | tig0010471:-11830 | Msa1348590:CDS |
| TTCTGGAACAGTGTCAAAAG+GGG | 0.659816 | tig0010471:-11971 | Msa1348590:CDS |
| TGTAAATGGATTAATAGCAG+TGG | 0.661238 | tig0010471:-12687 | Msa1348590:CDS |
| TACAGAAGACGCAATATGGG+AGG | 0.662243 | tig0010471:+12474 | None:intergenic |
| ACCAATTAGACACAAACATG+GGG | 0.686937 | tig0010471:-11828 | Msa1348590:CDS |
| AGTTTGACTGGCTTGCAGAG+GGG | 0.711776 | tig0010471:+11864 | None:intergenic |
| TAGCCCATTTGAATGCACGG+TGG | 0.800372 | tig0010471:+12642 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTATTTTGTTTCTTT+TGG | - | tig0010471:12220-12239 | Msa1348590:CDS | 15.0% |
| !!! | TTGTTTTATTTTGTTTCTTT+TGG | - | tig0010471:12220-12239 | Msa1348590:CDS | 15.0% |
| !!! | GAAATACAACAAGTATTTTT+TGG | - | tig0010471:12177-12196 | Msa1348590:CDS | 20.0% |
| !!! | TTTTATTTTGTTTCTTTTGG+TGG | - | tig0010471:12223-12242 | Msa1348590:CDS | 20.0% |
| !!! | TTTTCTTATCAGAATATTCA+AGG | - | tig0010471:12513-12532 | Msa1348590:CDS | 20.0% |
| !!! | GAAATACAACAAGTATTTTT+TGG | - | tig0010471:12177-12196 | Msa1348590:CDS | 20.0% |
| !!! | TTTTATTTTGTTTCTTTTGG+TGG | - | tig0010471:12223-12242 | Msa1348590:CDS | 20.0% |
| !!! | TTTTCTTATCAGAATATTCA+AGG | - | tig0010471:12513-12532 | Msa1348590:CDS | 20.0% |
| ! | GATAAGAAAAAAGAATCCAT+CGG | + | tig0010471:12503-12522 | None:intergenic | 25.0% |
| ! | GATAAGAAAAAAGAATCCAT+CGG | + | tig0010471:12503-12522 | None:intergenic | 25.0% |
| !! | TGTAAATGGATTAATAGCAG+TGG | - | tig0010471:11830-11849 | Msa1348590:CDS | 30.0% |
| ATGACCAACAATTCTAAGTT+TGG | - | tig0010471:12131-12150 | Msa1348590:intron | 30.0% | |
| TGACCAACAATTCTAAGTTT+GGG | - | tig0010471:12132-12151 | Msa1348590:intron | 30.0% | |
| !!! | CAAGTATTTTTTGGCAATAG+TGG | - | tig0010471:12186-12205 | Msa1348590:CDS | 30.0% |
| ATTGAATATGCTTCTCAAGT+AGG | - | tig0010471:12302-12321 | Msa1348590:intron | 30.0% | |
| GTTTGTGTTAATTCTCAGAA+GGG | + | tig0010471:12446-12465 | None:intergenic | 30.0% | |
| TGTTTGTGTTAATTCTCAGA+AGG | + | tig0010471:12447-12466 | None:intergenic | 30.0% | |
| TTAAGATATTCCATTACCGA+TGG | - | tig0010471:12484-12503 | Msa1348590:CDS | 30.0% | |
| AAAAAAGAATCCATCGGTAA+TGG | + | tig0010471:12497-12516 | None:intergenic | 30.0% | |
| TATTGTGATAGTAGTTTGAC+TGG | + | tig0010471:12668-12687 | None:intergenic | 30.0% | |
| !! | TGTAAATGGATTAATAGCAG+TGG | - | tig0010471:11830-11849 | Msa1348590:CDS | 30.0% |
| ATGACCAACAATTCTAAGTT+TGG | - | tig0010471:12131-12150 | Msa1348590:intron | 30.0% | |
| TGACCAACAATTCTAAGTTT+GGG | - | tig0010471:12132-12151 | Msa1348590:intron | 30.0% | |
| !!! | CAAGTATTTTTTGGCAATAG+TGG | - | tig0010471:12186-12205 | Msa1348590:CDS | 30.0% |
| ATTGAATATGCTTCTCAAGT+AGG | - | tig0010471:12302-12321 | Msa1348590:intron | 30.0% | |
| GTTTGTGTTAATTCTCAGAA+GGG | + | tig0010471:12446-12465 | None:intergenic | 30.0% | |
| TGTTTGTGTTAATTCTCAGA+AGG | + | tig0010471:12447-12466 | None:intergenic | 30.0% | |
| TTAAGATATTCCATTACCGA+TGG | - | tig0010471:12484-12503 | Msa1348590:CDS | 30.0% | |
| AAAAAAGAATCCATCGGTAA+TGG | + | tig0010471:12497-12516 | None:intergenic | 30.0% | |
| TATTGTGATAGTAGTTTGAC+TGG | + | tig0010471:12668-12687 | None:intergenic | 30.0% | |
| TTTACACCATCCTTCTTCTT+CGG | + | tig0010471:11816-11835 | None:intergenic | 35.0% | |
| AAGAAGAAGGATGGTGTAAA+TGG | - | tig0010471:11816-11835 | Msa1348590:CDS | 35.0% | |
| TCTCATCCATGTCAAAATTC+TGG | - | tig0010471:11932-11951 | Msa1348590:CDS | 35.0% | |
| TTAGCATTTATCTCTGCATC+TGG | + | tig0010471:11960-11979 | None:intergenic | 35.0% | |
| GACCAACAATTCTAAGTTTG+GGG | - | tig0010471:12133-12152 | Msa1348590:intron | 35.0% | |
| ATCCCCAAACTTAGAATTGT+TGG | + | tig0010471:12138-12157 | None:intergenic | 35.0% | |
| TGGCTAAGATAAAATGCAAG+AGG | - | tig0010471:12243-12262 | Msa1348590:CDS | 35.0% | |
| GGCTAAGATAAAATGCAAGA+GGG | - | tig0010471:12244-12263 | Msa1348590:CDS | 35.0% | |
| AGAAGATGCAGATGTATCAA+AGG | - | tig0010471:12274-12293 | Msa1348590:intron | 35.0% | |
| ! | TGTGATGCTACTTAGGAAAA+TGG | + | tig0010471:12384-12403 | None:intergenic | 35.0% |
| ! | TGCAAAATGTGATGCTACTT+AGG | + | tig0010471:12391-12410 | None:intergenic | 35.0% |
| TTCAAGGCAACAGATATTTC+TGG | - | tig0010471:12529-12548 | Msa1348590:CDS | 35.0% | |
| !! | ATTTCTGGAACAGTGTCAAA+AGG | - | tig0010471:12544-12563 | Msa1348590:CDS | 35.0% |
| !! | TTTCTGGAACAGTGTCAAAA+GGG | - | tig0010471:12545-12564 | Msa1348590:CDS | 35.0% |
| AGACCAATTAGACACAAACA+TGG | - | tig0010471:12687-12706 | Msa1348590:CDS | 35.0% | |
| GACCAATTAGACACAAACAT+GGG | - | tig0010471:12688-12707 | Msa1348590:CDS | 35.0% | |
| ACCAATTAGACACAAACATG+GGG | - | tig0010471:12689-12708 | Msa1348590:CDS | 35.0% | |
| TTTACACCATCCTTCTTCTT+CGG | + | tig0010471:11816-11835 | None:intergenic | 35.0% | |
| AAGAAGAAGGATGGTGTAAA+TGG | - | tig0010471:11816-11835 | Msa1348590:CDS | 35.0% | |
| TCTCATCCATGTCAAAATTC+TGG | - | tig0010471:11932-11951 | Msa1348590:CDS | 35.0% | |
| TTAGCATTTATCTCTGCATC+TGG | + | tig0010471:11960-11979 | None:intergenic | 35.0% | |
| GACCAACAATTCTAAGTTTG+GGG | - | tig0010471:12133-12152 | Msa1348590:intron | 35.0% | |
| ATCCCCAAACTTAGAATTGT+TGG | + | tig0010471:12138-12157 | None:intergenic | 35.0% | |
| TGGCTAAGATAAAATGCAAG+AGG | - | tig0010471:12243-12262 | Msa1348590:CDS | 35.0% | |
| GGCTAAGATAAAATGCAAGA+GGG | - | tig0010471:12244-12263 | Msa1348590:CDS | 35.0% | |
| AGAAGATGCAGATGTATCAA+AGG | - | tig0010471:12274-12293 | Msa1348590:intron | 35.0% | |
| ! | TGTGATGCTACTTAGGAAAA+TGG | + | tig0010471:12384-12403 | None:intergenic | 35.0% |
| ! | TGCAAAATGTGATGCTACTT+AGG | + | tig0010471:12391-12410 | None:intergenic | 35.0% |
| TTCAAGGCAACAGATATTTC+TGG | - | tig0010471:12529-12548 | Msa1348590:CDS | 35.0% | |
| !! | ATTTCTGGAACAGTGTCAAA+AGG | - | tig0010471:12544-12563 | Msa1348590:CDS | 35.0% |
| !! | TTTCTGGAACAGTGTCAAAA+GGG | - | tig0010471:12545-12564 | Msa1348590:CDS | 35.0% |
| AGACCAATTAGACACAAACA+TGG | - | tig0010471:12687-12706 | Msa1348590:CDS | 35.0% | |
| GACCAATTAGACACAAACAT+GGG | - | tig0010471:12688-12707 | Msa1348590:CDS | 35.0% | |
| ACCAATTAGACACAAACATG+GGG | - | tig0010471:12689-12708 | Msa1348590:CDS | 35.0% | |
| AGTGGCAGTAAACAACGAAA+AGG | - | tig0010471:11848-11867 | Msa1348590:CDS | 40.0% | |
| CAATAGCCCATTTGAATGCA+CGG | + | tig0010471:11881-11900 | None:intergenic | 40.0% | |
| ! | ATGTATAGAGCATCTGCATC+TGG | + | tig0010471:12020-12039 | None:intergenic | 40.0% |
| GTGTACAGAAGACGCAATAT+GGG | + | tig0010471:12049-12068 | None:intergenic | 40.0% | |
| TTGGGGATCAAACATGATTG+TGG | - | tig0010471:12150-12169 | Msa1348590:intron | 40.0% | |
| GGAATTGAGCATCTGATTCT+TGG | - | tig0010471:12323-12342 | Msa1348590:intron | 40.0% | |
| TAATTCTCAGAAGGGATGGT+AGG | + | tig0010471:12438-12457 | None:intergenic | 40.0% | |
| GTGTTAATTCTCAGAAGGGA+TGG | + | tig0010471:12442-12461 | None:intergenic | 40.0% | |
| !! | TTCTGGAACAGTGTCAAAAG+GGG | - | tig0010471:12546-12565 | Msa1348590:CDS | 40.0% |
| ACATAGACTGTGCAGAAATC+TGG | + | tig0010471:12574-12593 | None:intergenic | 40.0% | |
| TTCTGCACAGTCTATGTGAT+TGG | - | tig0010471:12577-12596 | Msa1348590:CDS | 40.0% | |
| ACAGTCTATGTGATTGGCAA+TGG | - | tig0010471:12583-12602 | Msa1348590:CDS | 40.0% | |
| ACCCCATGTTTGTGTCTAAT+TGG | + | tig0010471:12693-12712 | None:intergenic | 40.0% | |
| ATTAGACACAAACATGGGGT+TGG | - | tig0010471:12693-12712 | Msa1348590:CDS | 40.0% | |
| GGGTTGGAACAAAGTGTAAA+AGG | - | tig0010471:12709-12728 | Msa1348590:CDS | 40.0% | |
| AGTGGCAGTAAACAACGAAA+AGG | - | tig0010471:11848-11867 | Msa1348590:CDS | 40.0% | |
| CAATAGCCCATTTGAATGCA+CGG | + | tig0010471:11881-11900 | None:intergenic | 40.0% | |
| ! | ATGTATAGAGCATCTGCATC+TGG | + | tig0010471:12020-12039 | None:intergenic | 40.0% |
| GTGTACAGAAGACGCAATAT+GGG | + | tig0010471:12049-12068 | None:intergenic | 40.0% | |
| TTGGGGATCAAACATGATTG+TGG | - | tig0010471:12150-12169 | Msa1348590:intron | 40.0% | |
| GGAATTGAGCATCTGATTCT+TGG | - | tig0010471:12323-12342 | Msa1348590:intron | 40.0% | |
| TAATTCTCAGAAGGGATGGT+AGG | + | tig0010471:12438-12457 | None:intergenic | 40.0% | |
| GTGTTAATTCTCAGAAGGGA+TGG | + | tig0010471:12442-12461 | None:intergenic | 40.0% | |
| !! | TTCTGGAACAGTGTCAAAAG+GGG | - | tig0010471:12546-12565 | Msa1348590:CDS | 40.0% |
| ACATAGACTGTGCAGAAATC+TGG | + | tig0010471:12574-12593 | None:intergenic | 40.0% | |
| TTCTGCACAGTCTATGTGAT+TGG | - | tig0010471:12577-12596 | Msa1348590:CDS | 40.0% | |
| ACAGTCTATGTGATTGGCAA+TGG | - | tig0010471:12583-12602 | Msa1348590:CDS | 40.0% | |
| ACCCCATGTTTGTGTCTAAT+TGG | + | tig0010471:12693-12712 | None:intergenic | 40.0% | |
| ATTAGACACAAACATGGGGT+TGG | - | tig0010471:12693-12712 | Msa1348590:CDS | 40.0% | |
| GGGTTGGAACAAAGTGTAAA+AGG | - | tig0010471:12709-12728 | Msa1348590:CDS | 40.0% | |
| !! | CTGGTGCCAGAATTTTGACA+TGG | + | tig0010471:11941-11960 | None:intergenic | 45.0% |
| TACAGAAGACGCAATATGGG+AGG | + | tig0010471:12046-12065 | None:intergenic | 45.0% | |
| CGTGTACAGAAGACGCAATA+TGG | + | tig0010471:12050-12069 | None:intergenic | 45.0% | |
| ! | GCTTGCAGAGGGGAAATTTT+TGG | + | tig0010471:12646-12665 | None:intergenic | 45.0% |
| !! | TAGTTTGACTGGCTTGCAGA+GGG | + | tig0010471:12657-12676 | None:intergenic | 45.0% |
| !! | CTGGTGCCAGAATTTTGACA+TGG | + | tig0010471:11941-11960 | None:intergenic | 45.0% |
| TACAGAAGACGCAATATGGG+AGG | + | tig0010471:12046-12065 | None:intergenic | 45.0% | |
| CGTGTACAGAAGACGCAATA+TGG | + | tig0010471:12050-12069 | None:intergenic | 45.0% | |
| ! | GCTTGCAGAGGGGAAATTTT+TGG | + | tig0010471:12646-12665 | None:intergenic | 45.0% |
| !! | TAGTTTGACTGGCTTGCAGA+GGG | + | tig0010471:12657-12676 | None:intergenic | 45.0% |
| TCGTTGCCGAAGAAGAAGGA+TGG | - | tig0010471:11807-11826 | Msa1348590:CDS | 50.0% | |
| AGAGCCACCGTGCATTCAAA+TGG | - | tig0010471:11871-11890 | Msa1348590:CDS | 50.0% | |
| GAGCCACCGTGCATTCAAAT+GGG | - | tig0010471:11872-11891 | Msa1348590:CDS | 50.0% | |
| TAGCCCATTTGAATGCACGG+TGG | + | tig0010471:11878-11897 | None:intergenic | 50.0% | |
| !! | AGTTTGACTGGCTTGCAGAG+GGG | + | tig0010471:12656-12675 | None:intergenic | 50.0% |
| !! | GTAGTTTGACTGGCTTGCAG+AGG | + | tig0010471:12658-12677 | None:intergenic | 50.0% |
| TCGTTGCCGAAGAAGAAGGA+TGG | - | tig0010471:11807-11826 | Msa1348590:CDS | 50.0% | |
| AGAGCCACCGTGCATTCAAA+TGG | - | tig0010471:11871-11890 | Msa1348590:CDS | 50.0% | |
| GAGCCACCGTGCATTCAAAT+GGG | - | tig0010471:11872-11891 | Msa1348590:CDS | 50.0% | |
| TAGCCCATTTGAATGCACGG+TGG | + | tig0010471:11878-11897 | None:intergenic | 50.0% | |
| !! | AGTTTGACTGGCTTGCAGAG+GGG | + | tig0010471:12656-12675 | None:intergenic | 50.0% |
| !! | GTAGTTTGACTGGCTTGCAG+AGG | + | tig0010471:12658-12677 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0010471 | gene | 11804 | 12735 | 11804 | ID=Msa1348590;Name=Msa1348590 |
| tig0010471 | mRNA | 11804 | 12735 | 11804 | ID=Msa1348590-mRNA-1;Parent=Msa1348590;Name=Msa1348590-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|3|0|201 |
| tig0010471 | exon | 12463 | 12735 | 12463 | ID=Msa1348590-mRNA-1:exon:6550;Parent=Msa1348590-mRNA-1 |
| tig0010471 | exon | 12167 | 12288 | 12167 | ID=Msa1348590-mRNA-1:exon:6549;Parent=Msa1348590-mRNA-1 |
| tig0010471 | exon | 11804 | 12014 | 11804 | ID=Msa1348590-mRNA-1:exon:6548;Parent=Msa1348590-mRNA-1 |
| tig0010471 | CDS | 12463 | 12735 | 12463 | ID=Msa1348590-mRNA-1:cds;Parent=Msa1348590-mRNA-1 |
| tig0010471 | CDS | 12167 | 12288 | 12167 | ID=Msa1348590-mRNA-1:cds;Parent=Msa1348590-mRNA-1 |
| tig0010471 | CDS | 11804 | 12014 | 11804 | ID=Msa1348590-mRNA-1:cds;Parent=Msa1348590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
