Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1355590 | RHN76155.1 | 92.120 | 533 | 25 | 6 | 1 | 531 | 1 | 518 | 0.0 | 966 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1355590 | sp|Q5YGP7|PLET2_ARATH | 59.167 | 600 | 144 | 28 | 1 | 531 | 1 | 568 | 0.0 | 588 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1355590 | A0A396JIH0 | 92.120 | 533 | 25 | 6 | 1 | 531 | 1 | 518 | 0.0 | 966 |
Gene ID | Type | Classification |
---|---|---|
Msa1355590 | TF | AP2/ERF-AP2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0150920 | Msa1355590 | 0.807489 | 4.930388e-50 | -8.615850e-47 |
Msa1225510 | Msa1355590 | 0.905450 | 4.239304e-80 | -8.615850e-47 |
Msa0987640 | Msa1355590 | 0.800955 | 1.130196e-48 | -8.615850e-47 |
Msa1006170 | Msa1355590 | 0.811134 | 8.150611e-51 | -8.615850e-47 |
Msa0264760 | Msa1355590 | 0.929685 | 4.873820e-93 | -8.615850e-47 |
Msa0302790 | Msa1355590 | 0.986579 | 2.924833e-167 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1355590 | MtrunA17_Chr2g0328971 | 92.120 | 533 | 25 | 6 | 1 | 531 | 1 | 518 | 0.0 | 966 |
Msa1355590 | MtrunA17_Chr4g0032631 | 64.516 | 558 | 148 | 21 | 4 | 531 | 3 | 540 | 0.0 | 612 |
Msa1355590 | MtrunA17_Chr7g0249621 | 60.399 | 351 | 95 | 9 | 153 | 468 | 238 | 579 | 1.46e-127 | 388 |
Msa1355590 | MtrunA17_Chr4g0072291 | 79.167 | 216 | 41 | 2 | 164 | 376 | 148 | 362 | 3.14e-121 | 366 |
Msa1355590 | MtrunA17_Chr8g0343851 | 51.095 | 411 | 118 | 11 | 11 | 359 | 42 | 431 | 2.73e-120 | 365 |
Msa1355590 | MtrunA17_Chr5g0412151 | 51.675 | 418 | 143 | 11 | 4 | 371 | 11 | 419 | 1.91e-111 | 341 |
Msa1355590 | MtrunA17_Chr3g0135161 | 66.265 | 249 | 62 | 3 | 133 | 362 | 251 | 496 | 2.93e-111 | 345 |
Msa1355590 | MtrunA17_Chr1g0152161 | 65.769 | 260 | 65 | 6 | 133 | 373 | 253 | 507 | 1.34e-109 | 340 |
Msa1355590 | MtrunA17_Chr4g0054351 | 73.113 | 212 | 53 | 2 | 166 | 374 | 301 | 511 | 2.31e-105 | 330 |
Msa1355590 | MtrunA17_Chr5g0400871 | 76.923 | 195 | 41 | 2 | 171 | 362 | 245 | 438 | 2.53e-104 | 323 |
Msa1355590 | MtrunA17_Chr4g0073521 | 70.482 | 166 | 49 | 0 | 174 | 339 | 46 | 211 | 2.24e-83 | 263 |
Msa1355590 | MtrunA17_Chr7g0216601 | 57.339 | 218 | 85 | 3 | 174 | 384 | 64 | 280 | 1.81e-77 | 249 |
Msa1355590 | MtrunA17_Chr8g0355191 | 65.143 | 175 | 61 | 0 | 174 | 348 | 54 | 228 | 3.81e-76 | 246 |
Msa1355590 | MtrunA17_Chr6g0452911 | 60.804 | 199 | 64 | 3 | 179 | 365 | 65 | 261 | 2.27e-75 | 243 |
Msa1355590 | MtrunA17_Chr8g0367311 | 69.375 | 160 | 45 | 2 | 212 | 371 | 22 | 177 | 7.02e-72 | 229 |
Msa1355590 | MtrunA17_Chr4g0002011 | 68.047 | 169 | 51 | 1 | 174 | 339 | 35 | 203 | 7.38e-72 | 232 |
Msa1355590 | MtrunA17_Chr8g0355181 | 65.060 | 166 | 58 | 0 | 174 | 339 | 55 | 220 | 1.94e-69 | 228 |
Msa1355590 | MtrunA17_Chr8g0362541 | 63.388 | 183 | 53 | 1 | 171 | 339 | 65 | 247 | 6.73e-69 | 227 |
Msa1355590 | MtrunA17_Chr2g0305821 | 59.542 | 131 | 49 | 2 | 155 | 284 | 29 | 156 | 1.53e-41 | 146 |
Msa1355590 | MtrunA17_Chr5g0401891 | 47.959 | 196 | 86 | 5 | 150 | 340 | 122 | 306 | 1.97e-39 | 150 |
Msa1355590 | MtrunA17_Chr4g0053181 | 52.121 | 165 | 65 | 4 | 179 | 340 | 177 | 330 | 1.19e-38 | 148 |
Msa1355590 | MtrunA17_Chr7g0257361 | 58.015 | 131 | 47 | 2 | 173 | 300 | 55 | 180 | 2.48e-38 | 145 |
Msa1355590 | MtrunA17_Chr7g0263581 | 49.697 | 165 | 69 | 4 | 179 | 340 | 140 | 293 | 1.47e-37 | 144 |
Msa1355590 | MtrunA17_Chr4g0030191 | 42.584 | 209 | 105 | 5 | 135 | 340 | 89 | 285 | 3.55e-36 | 140 |
Msa1355590 | MtrunA17_Chr2g0325911 | 42.188 | 192 | 80 | 6 | 154 | 340 | 108 | 273 | 3.85e-29 | 120 |
Msa1355590 | MtrunA17_Chr2g0305831 | 72.881 | 59 | 16 | 0 | 281 | 339 | 1 | 59 | 6.78e-24 | 99.8 |
Msa1355590 | MtrunA17_Chr8g0367321 | 33.484 | 221 | 104 | 12 | 3 | 213 | 6 | 193 | 4.68e-21 | 91.3 |
Msa1355590 | MtrunA17_Chr3g0126151 | 44.211 | 95 | 52 | 1 | 223 | 317 | 47 | 140 | 9.85e-20 | 85.9 |
Msa1355590 | MtrunA17_Chr5g0432821 | 39.423 | 104 | 59 | 2 | 268 | 368 | 114 | 216 | 4.13e-12 | 67.0 |
Msa1355590 | MtrunA17_Chr1g0170761 | 39.024 | 123 | 61 | 4 | 175 | 294 | 134 | 245 | 4.73e-12 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1355590 | AT1G51190.1 | 59.167 | 600 | 144 | 28 | 1 | 531 | 1 | 568 | 0.0 | 588 |
Msa1355590 | AT3G20840.1 | 57.877 | 603 | 153 | 27 | 1 | 531 | 1 | 574 | 0.0 | 573 |
Msa1355590 | AT5G17430.2 | 82.857 | 210 | 30 | 3 | 157 | 363 | 129 | 335 | 4.72e-123 | 371 |
Msa1355590 | AT5G17430.1 | 82.857 | 210 | 30 | 3 | 157 | 363 | 191 | 397 | 1.04e-122 | 372 |
Msa1355590 | AT5G57390.2 | 83.500 | 200 | 29 | 2 | 158 | 354 | 65 | 263 | 2.74e-121 | 364 |
Msa1355590 | AT5G57390.1 | 83.500 | 200 | 29 | 2 | 158 | 354 | 183 | 381 | 3.38e-120 | 365 |
Msa1355590 | AT1G72570.1 | 63.178 | 258 | 72 | 3 | 116 | 350 | 141 | 398 | 6.63e-109 | 331 |
Msa1355590 | AT5G10510.2 | 80.660 | 212 | 37 | 3 | 166 | 377 | 218 | 425 | 1.68e-108 | 334 |
Msa1355590 | AT4G37750.1 | 79.188 | 197 | 37 | 2 | 166 | 359 | 271 | 466 | 9.02e-107 | 330 |
Msa1355590 | AT5G10510.7 | 79.535 | 215 | 37 | 4 | 166 | 377 | 218 | 428 | 2.35e-106 | 329 |
Msa1355590 | AT5G10510.5 | 79.535 | 215 | 37 | 4 | 166 | 377 | 218 | 428 | 2.35e-106 | 329 |
Msa1355590 | AT5G10510.1 | 79.535 | 215 | 37 | 4 | 166 | 377 | 241 | 451 | 3.99e-106 | 329 |
Msa1355590 | AT5G10510.6 | 79.535 | 215 | 37 | 4 | 166 | 377 | 256 | 466 | 5.05e-106 | 329 |
Msa1355590 | AT5G10510.4 | 79.535 | 215 | 37 | 4 | 166 | 377 | 256 | 466 | 5.05e-106 | 329 |
Msa1355590 | AT5G65510.4 | 68.699 | 246 | 61 | 5 | 137 | 367 | 120 | 364 | 2.54e-105 | 323 |
Msa1355590 | AT5G65510.2 | 68.699 | 246 | 61 | 5 | 137 | 367 | 178 | 422 | 3.64e-105 | 324 |
Msa1355590 | AT5G65510.1 | 68.699 | 246 | 61 | 5 | 137 | 367 | 178 | 422 | 3.64e-105 | 324 |
Msa1355590 | AT5G10510.3 | 72.340 | 235 | 38 | 4 | 166 | 377 | 256 | 486 | 1.05e-101 | 319 |
Msa1355590 | AT5G65510.3 | 50.169 | 295 | 102 | 8 | 60 | 309 | 13 | 307 | 5.29e-86 | 268 |
Msa1355590 | AT3G54320.3 | 64.497 | 169 | 57 | 1 | 174 | 339 | 61 | 229 | 1.61e-65 | 219 |
Msa1355590 | AT3G54320.1 | 64.497 | 169 | 57 | 1 | 174 | 339 | 61 | 229 | 1.96e-65 | 219 |
Msa1355590 | AT1G16060.1 | 56.132 | 212 | 88 | 2 | 133 | 339 | 11 | 222 | 6.63e-63 | 209 |
Msa1355590 | AT1G79700.2 | 57.346 | 211 | 75 | 2 | 174 | 369 | 48 | 258 | 6.59e-62 | 206 |
Msa1355590 | AT1G79700.1 | 54.028 | 211 | 72 | 3 | 174 | 369 | 48 | 248 | 3.46e-54 | 185 |
Msa1355590 | AT3G54320.4 | 54.167 | 168 | 72 | 2 | 212 | 375 | 36 | 202 | 5.65e-47 | 168 |
Msa1355590 | AT3G54320.5 | 54.167 | 168 | 72 | 2 | 212 | 375 | 36 | 202 | 5.65e-47 | 168 |
Msa1355590 | AT1G79700.4 | 55.294 | 170 | 64 | 1 | 212 | 369 | 7 | 176 | 8.77e-43 | 152 |
Msa1355590 | AT1G79700.3 | 54.598 | 174 | 67 | 1 | 212 | 373 | 13 | 186 | 8.81e-43 | 153 |
Msa1355590 | AT1G16060.3 | 64.925 | 134 | 47 | 0 | 206 | 339 | 19 | 152 | 7.98e-42 | 151 |
Msa1355590 | AT4G36920.1 | 47.208 | 197 | 90 | 4 | 158 | 351 | 111 | 296 | 1.51e-39 | 149 |
Msa1355590 | AT4G36920.2 | 47.208 | 197 | 90 | 4 | 158 | 351 | 111 | 296 | 1.51e-39 | 149 |
Msa1355590 | AT5G67180.1 | 40.693 | 231 | 115 | 5 | 179 | 398 | 97 | 316 | 2.22e-38 | 144 |
Msa1355590 | AT2G41710.1 | 56.818 | 132 | 49 | 2 | 171 | 299 | 63 | 189 | 8.63e-38 | 144 |
Msa1355590 | AT2G41710.4 | 56.818 | 132 | 49 | 2 | 171 | 299 | 63 | 189 | 1.86e-37 | 144 |
Msa1355590 | AT5G67180.2 | 45.833 | 192 | 90 | 4 | 179 | 367 | 97 | 277 | 1.19e-36 | 138 |
Msa1355590 | AT2G28550.3 | 48.023 | 177 | 78 | 4 | 179 | 352 | 154 | 319 | 2.12e-36 | 141 |
Msa1355590 | AT5G67180.3 | 47.429 | 175 | 78 | 4 | 179 | 350 | 97 | 260 | 8.48e-36 | 135 |
Msa1355590 | AT2G41710.2 | 54.745 | 137 | 49 | 3 | 171 | 299 | 63 | 194 | 2.01e-35 | 137 |
Msa1355590 | AT2G41710.3 | 44.910 | 167 | 49 | 3 | 171 | 299 | 63 | 224 | 3.54e-31 | 126 |
Msa1355590 | AT1G16060.2 | 68.182 | 88 | 28 | 0 | 252 | 339 | 1 | 88 | 8.36e-30 | 116 |
Msa1355590 | AT1G16060.4 | 68.182 | 88 | 28 | 0 | 252 | 339 | 1 | 88 | 8.36e-30 | 116 |
Msa1355590 | AT1G16060.6 | 68.182 | 88 | 28 | 0 | 252 | 339 | 1 | 88 | 8.36e-30 | 116 |
Msa1355590 | AT1G16060.5 | 68.182 | 88 | 28 | 0 | 252 | 339 | 1 | 88 | 8.36e-30 | 116 |
Msa1355590 | AT3G54320.2 | 67.045 | 88 | 29 | 0 | 252 | 339 | 1 | 88 | 1.12e-28 | 115 |
Msa1355590 | AT2G28550.4 | 47.857 | 140 | 59 | 4 | 179 | 315 | 154 | 282 | 3.07e-28 | 115 |
Msa1355590 | AT2G28550.1 | 43.503 | 177 | 71 | 5 | 179 | 352 | 154 | 304 | 4.92e-28 | 117 |
Msa1355590 | AT5G67180.4 | 46.207 | 145 | 64 | 4 | 179 | 320 | 97 | 230 | 1.96e-26 | 108 |
Msa1355590 | AT2G28550.2 | 46.825 | 126 | 53 | 4 | 179 | 301 | 154 | 268 | 1.84e-23 | 100 |
Msa1355590 | AT2G28550.6 | 46.825 | 126 | 53 | 4 | 179 | 301 | 154 | 268 | 1.84e-23 | 100 |
Msa1355590 | AT2G28550.5 | 43.796 | 137 | 61 | 2 | 212 | 348 | 14 | 134 | 6.66e-21 | 93.6 |
Msa1355590 | AT2G39250.2 | 40.179 | 112 | 54 | 3 | 179 | 287 | 109 | 210 | 1.48e-20 | 91.3 |
Msa1355590 | AT2G39250.1 | 40.179 | 112 | 54 | 3 | 179 | 287 | 109 | 210 | 3.97e-20 | 92.0 |
Msa1355590 | AT1G16060.7 | 75.862 | 58 | 14 | 0 | 282 | 339 | 9 | 66 | 2.87e-17 | 80.5 |
Msa1355590 | AT5G60120.6 | 42.636 | 129 | 60 | 4 | 175 | 300 | 157 | 274 | 1.14e-16 | 83.2 |
Msa1355590 | AT5G60120.1 | 42.636 | 129 | 60 | 4 | 175 | 300 | 157 | 274 | 1.25e-16 | 83.2 |
Msa1355590 | AT5G60120.2 | 42.636 | 129 | 60 | 4 | 175 | 300 | 157 | 274 | 1.62e-16 | 82.8 |
Msa1355590 | AT5G60120.4 | 42.636 | 129 | 60 | 4 | 175 | 300 | 157 | 274 | 1.75e-16 | 82.0 |
Msa1355590 | AT5G60120.3 | 42.636 | 129 | 60 | 4 | 175 | 300 | 157 | 274 | 1.75e-16 | 82.0 |
Msa1355590 | AT5G60120.5 | 42.636 | 129 | 60 | 4 | 175 | 300 | 157 | 274 | 1.75e-16 | 82.0 |
Msa1355590 | AT3G54990.2 | 43.396 | 106 | 47 | 3 | 179 | 281 | 123 | 218 | 9.94e-16 | 77.4 |
Msa1355590 | AT3G54990.1 | 43.396 | 106 | 47 | 3 | 179 | 281 | 123 | 218 | 2.87e-15 | 77.8 |
Find 113 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGATTAAATTACCATGATTT+TGG | 0.135577 | tig0014834:+72034 | None:intergenic |
CTCTAGAATCTTCTAGAAAA+AGG | 0.178651 | tig0014834:-69613 | Msa1355590:CDS |
TGTTGTTCAAACTGCATTAA+AGG | 0.189535 | tig0014834:+69506 | None:intergenic |
TGAGTTATTCATTTCATTAT+AGG | 0.209836 | tig0014834:+71789 | None:intergenic |
TGAAATTAATTACCTTCTTA+TGG | 0.225596 | tig0014834:+70570 | None:intergenic |
AATGGTGGTGGAGGGTATAT+TGG | 0.226918 | tig0014834:-69311 | Msa1355590:CDS |
GACATGCCTTCCGGAAATTA+TGG | 0.230633 | tig0014834:-69191 | Msa1355590:CDS |
CACGATATATTGATGTTCTT+TGG | 0.247413 | tig0014834:+71530 | None:intergenic |
GATCTTTACTTAGGAACTTT+TGG | 0.251202 | tig0014834:-70145 | Msa1355590:intron |
AATGACTGCAGATTATTGTT+AGG | 0.275259 | tig0014834:+71664 | None:intergenic |
TTTGCAGCACCTCCTCCTAT+TGG | 0.289449 | tig0014834:+69656 | None:intergenic |
TTGTATCCTACTTGAATTTG+AGG | 0.342778 | tig0014834:+69541 | None:intergenic |
TTGCAGCACCTCCTCCTATT+GGG | 0.343891 | tig0014834:+69657 | None:intergenic |
TGAATATGGGCTCAAATAAC+TGG | 0.357964 | tig0014834:-72182 | None:intergenic |
GTTGTTCAAACTGCATTAAA+GGG | 0.376527 | tig0014834:+69507 | None:intergenic |
ATGGTGGTGGAGGGTATATT+GGG | 0.377237 | tig0014834:-69310 | Msa1355590:CDS |
AGAAGAGCTTTGGATACCTT+TGG | 0.392118 | tig0014834:-71553 | Msa1355590:CDS |
AAGGTATCCAAAGCTCTTCT+AGG | 0.393713 | tig0014834:+71556 | None:intergenic |
TGACTGTCCTTCCCTTCTAC+AGG | 0.397204 | tig0014834:+71171 | None:intergenic |
GTTGATTATGACATGCCTTC+CGG | 0.401891 | tig0014834:-69200 | Msa1355590:CDS |
CGACCAACCTCCATAATTTC+CGG | 0.402775 | tig0014834:+69181 | None:intergenic |
GAAGGTATGAAGCTCACCTT+TGG | 0.402885 | tig0014834:-71201 | Msa1355590:CDS |
TTGGAATGAGTTTGAATTGT+GGG | 0.408840 | tig0014834:-69274 | Msa1355590:CDS |
GGAAATTATGGAGGTTGGTC+GGG | 0.425370 | tig0014834:-69179 | Msa1355590:CDS |
GGTATATTGGGAATATGAAT+GGG | 0.425972 | tig0014834:-69298 | Msa1355590:CDS |
ATTTAGCAGCACTAAAGTAC+TGG | 0.427804 | tig0014834:-70815 | Msa1355590:CDS |
CTTGAGTACTACTATCATAT+AGG | 0.428966 | tig0014834:+69471 | None:intergenic |
CCAAGAAAATCTGCAACCTT+TGG | 0.429600 | tig0014834:+71853 | None:intergenic |
CAAGAGATGATAGCACTTGC+AGG | 0.432508 | tig0014834:-69587 | Msa1355590:CDS |
GGAAGATGGCAAGCAAGAAT+TGG | 0.433856 | tig0014834:-70187 | Msa1355590:CDS |
GGGTATATTGGGAATATGAA+TGG | 0.434077 | tig0014834:-69299 | Msa1355590:CDS |
AAAATCTCTATAGACATAGA+TGG | 0.436081 | tig0014834:-71228 | Msa1355590:intron |
GCAGTCATTGACATTATCAA+TGG | 0.442110 | tig0014834:-71650 | Msa1355590:CDS |
AGTTGTGACTACTATTCATA+AGG | 0.442739 | tig0014834:+71887 | None:intergenic |
TTTGGGATAATACCTGTAGA+AGG | 0.444301 | tig0014834:-71183 | Msa1355590:CDS |
GAAAGTAACACTCTCCCAAT+AGG | 0.444618 | tig0014834:-69671 | Msa1355590:CDS |
ATGACTGCAGATTATTGTTA+GGG | 0.445990 | tig0014834:+71665 | None:intergenic |
GAAACCCCTTTCCAAAATCA+TGG | 0.451693 | tig0014834:-72045 | Msa1355590:intron |
GGAGGAAGTTGCATATGTTA+AGG | 0.454428 | tig0014834:-69222 | Msa1355590:CDS |
CTCTATAGACATAGATGGAC+AGG | 0.457496 | tig0014834:-71223 | Msa1355590:intron |
GGAAACAAAGATCTTTACTT+AGG | 0.458638 | tig0014834:-70154 | Msa1355590:CDS |
TGCAACCTTTGGAACTTCGT+TGG | 0.461237 | tig0014834:+71864 | None:intergenic |
TGCAACACCTAGAAGAGCTT+TGG | 0.461962 | tig0014834:-71563 | Msa1355590:CDS |
GGATGATGAGTTGGAGAAAG+TGG | 0.482295 | tig0014834:+72150 | None:intergenic |
CGGAAATTATGGAGGTTGGT+CGG | 0.486285 | tig0014834:-69180 | Msa1355590:CDS |
ATTCATGTCAAAATTTGTTA+CGG | 0.487169 | tig0014834:+69718 | None:intergenic |
TGTGGGAATAACAATGTTGT+TGG | 0.494329 | tig0014834:-69257 | Msa1355590:CDS |
TTGCTTGCCATCTTCCATGT+TGG | 0.497961 | tig0014834:+70194 | None:intergenic |
GCAAGAATTGGCCGAGTCGC+GGG | 0.498025 | tig0014834:-70175 | Msa1355590:CDS |
GATCTTTGTTTCCCGCGACT+CGG | 0.498889 | tig0014834:+70164 | None:intergenic |
ATTGGGAATATGAATGGGGT+TGG | 0.503650 | tig0014834:-69293 | Msa1355590:CDS |
AATTTGTTGCCGCCATAAGA+AGG | 0.503705 | tig0014834:-70582 | Msa1355590:intron |
AAGGTATGAAGCTCACCTTT+GGG | 0.511515 | tig0014834:-71200 | Msa1355590:CDS |
AGCAAGAATTGGCCGAGTCG+CGG | 0.525105 | tig0014834:-70176 | Msa1355590:CDS |
GGCATCACCAACATGGAAGA+TGG | 0.526869 | tig0014834:-70201 | Msa1355590:CDS |
GTGATAGACAATAATGGTGG+TGG | 0.530151 | tig0014834:-69323 | Msa1355590:CDS |
TATTGATGTTCTTTGGCCAA+AGG | 0.530682 | tig0014834:+71537 | None:intergenic |
TGAAGATGAGGTGGTAATGA+AGG | 0.530699 | tig0014834:+72129 | None:intergenic |
CAATATATCGTGGTGTAACA+AGG | 0.532312 | tig0014834:-71519 | Msa1355590:intron |
AATGGGAAGTGGTACTACTA+AGG | 0.536189 | tig0014834:-71632 | Msa1355590:CDS |
TAATTACTTGTTCATGTCGC+CGG | 0.538221 | tig0014834:-71749 | Msa1355590:CDS |
GGTGCAGATGCTTCAAATGC+TGG | 0.539284 | tig0014834:-69158 | Msa1355590:CDS |
AGGGAAGGACAGTCAAGAAA+AGG | 0.539990 | tig0014834:-71163 | Msa1355590:CDS |
CAGTCATTGACATTATCAAT+GGG | 0.548009 | tig0014834:-71649 | Msa1355590:CDS |
CTTCCGGAAATTATGGAGGT+TGG | 0.549682 | tig0014834:-69184 | Msa1355590:CDS |
ATGGGTGTGATAGACAATAA+TGG | 0.560074 | tig0014834:-69329 | Msa1355590:CDS |
ACACCCATGTTCATCAAACT+CGG | 0.561457 | tig0014834:+69344 | None:intergenic |
TTTAGCAGCACTAAAGTACT+GGG | 0.564177 | tig0014834:-70814 | Msa1355590:CDS |
ATTAGTCAATGACAACATGT+TGG | 0.573305 | tig0014834:-72067 | Msa1355590:CDS |
ATAGACAATAATGGTGGTGG+AGG | 0.582366 | tig0014834:-69320 | Msa1355590:CDS |
TCAGATCAGTAACTATGAGA+AGG | 0.584536 | tig0014834:-70638 | Msa1355590:intron |
GGTAATGAAGGATGATGAGT+TGG | 0.585569 | tig0014834:+72141 | None:intergenic |
TGAGTTGGTTGAAGATGAGG+TGG | 0.591775 | tig0014834:+72120 | None:intergenic |
GTTGGAATGAGTTTGAATTG+TGG | 0.592550 | tig0014834:-69275 | Msa1355590:CDS |
TTCTACAGGTATTATCCCAA+AGG | 0.592746 | tig0014834:+71185 | None:intergenic |
TTGACATTATCAATGGGAAG+TGG | 0.593497 | tig0014834:-71643 | Msa1355590:CDS |
AACACTCTCCCAATAGGAGG+AGG | 0.597862 | tig0014834:-69665 | Msa1355590:CDS |
AATTAATTACCTTCTTATGG+CGG | 0.598414 | tig0014834:+70573 | None:intergenic |
TCAAGTAGGATACAATTACA+AGG | 0.603511 | tig0014834:-69533 | Msa1355590:CDS |
GATAATACCTGTAGAAGGGA+AGG | 0.608725 | tig0014834:-71178 | Msa1355590:CDS |
GAATATCCTCAAATTCAAGT+AGG | 0.609340 | tig0014834:-69547 | Msa1355590:CDS |
TGGTGATGATGAGATTGAGT+TGG | 0.609907 | tig0014834:+72105 | None:intergenic |
CACCCATGTTCATCAAACTC+GGG | 0.610304 | tig0014834:+69345 | None:intergenic |
CAATGTATCGTGGAGTCACA+AGG | 0.612069 | tig0014834:-70360 | Msa1355590:intron |
CAGTCAAGAAAAGGTCGTCA+AGG | 0.612537 | tig0014834:-71154 | Msa1355590:intron |
TTGGGATAATACCTGTAGAA+GGG | 0.613409 | tig0014834:-71182 | Msa1355590:CDS |
TAACCCGAGTTTGATGAACA+TGG | 0.613738 | tig0014834:-69348 | Msa1355590:CDS |
CTAATGTCCCAAGAGAAAAG+TGG | 0.615719 | tig0014834:+72085 | None:intergenic |
ATAAATTGCAGAAAGAGCAG+TGG | 0.617630 | tig0014834:-70400 | Msa1355590:intron |
GATTGAGTTGGTTGAAGATG+AGG | 0.620962 | tig0014834:+72117 | None:intergenic |
CAACTCCAACGAAGTTCCAA+AGG | 0.625333 | tig0014834:-71869 | Msa1355590:CDS |
GTATATTGGGAATATGAATG+GGG | 0.630081 | tig0014834:-69297 | Msa1355590:CDS |
AGTAACACTCTCCCAATAGG+AGG | 0.637219 | tig0014834:-69668 | Msa1355590:CDS |
TAGACAATAATGGTGGTGGA+GGG | 0.639818 | tig0014834:-69319 | Msa1355590:CDS |
ATCACCACTAGTTTCACATG+TGG | 0.641644 | tig0014834:+71606 | None:intergenic |
AACCCGAGTTTGATGAACAT+GGG | 0.646250 | tig0014834:-69347 | Msa1355590:CDS |
ATGCCTTCCGGAAATTATGG+AGG | 0.657477 | tig0014834:-69188 | Msa1355590:CDS |
CAACCTCCATAATTTCCGGA+AGG | 0.657620 | tig0014834:+69185 | None:intergenic |
GATTCCACATGTGAAACTAG+TGG | 0.661227 | tig0014834:-71610 | Msa1355590:CDS |
AGGGGTGCATCAATGTATCG+TGG | 0.662033 | tig0014834:-70370 | Msa1355590:CDS |
ACTTACGGGAAAGTTTGTAG+TGG | 0.663407 | tig0014834:+70782 | None:intergenic |
CAGTTACAACAACAACAAAG+TGG | 0.664261 | tig0014834:-69407 | Msa1355590:CDS |
ATAGCTGCAATCAAGTTCAG+AGG | 0.664893 | tig0014834:-69749 | Msa1355590:CDS |
CAAAGAACATCAATATATCG+TGG | 0.666274 | tig0014834:-71529 | Msa1355590:CDS |
ATAGACATAGATGGACAGGA+AGG | 0.674197 | tig0014834:-71219 | Msa1355590:intron |
TTACAACAACAACAAAGTGG+AGG | 0.678223 | tig0014834:-69404 | Msa1355590:CDS |
TGTTGGTGAACATGCAGCGG+AGG | 0.683901 | tig0014834:-69240 | Msa1355590:CDS |
GGAGGATTCTACAACTACGA+TGG | 0.689293 | tig0014834:-69386 | Msa1355590:CDS |
TAGCAGCACTAAAGTACTGG+GGG | 0.691402 | tig0014834:-70812 | Msa1355590:CDS |
ATGCTGGTGTTCTTACAATG+TGG | 0.696484 | tig0014834:-69142 | Msa1355590:CDS |
TGTTGTTGGTGAACATGCAG+CGG | 0.711969 | tig0014834:-69243 | Msa1355590:CDS |
TTAGCAGCACTAAAGTACTG+GGG | 0.731804 | tig0014834:-70813 | Msa1355590:CDS |
GGTGTGATAGACAATAATGG+TGG | 0.779774 | tig0014834:-69326 | Msa1355590:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGATTTATATTTATATATG+TGG | + | tig0014834:69349-69368 | None:intergenic | 10.0% |
!! | CTAAATAAAAAGAAAATTAA+GGG | + | tig0014834:70222-70241 | None:intergenic | 10.0% |
!! | ACTAAATAAAAAGAAAATTA+AGG | + | tig0014834:70223-70242 | None:intergenic | 10.0% |
!! | AATATTTATGTTCAATATAT+TGG | - | tig0014834:70394-70413 | Msa1355590:intron | 10.0% |
!!! | TAAATTTTTATGCTATATAT+AGG | - | tig0014834:70425-70444 | Msa1355590:intron | 10.0% |
!! | CAATTAATTAATTTAACATT+AGG | + | tig0014834:70639-70658 | None:intergenic | 10.0% |
!!! | GAAATTTATTTTTTTTTTAG+GGG | + | tig0014834:70869-70888 | None:intergenic | 10.0% |
!!! | AATATTGGAATATTTTTTAT+AGG | - | tig0014834:71498-71517 | Msa1355590:intron | 10.0% |
!! | TTAACAAAATTATAAATCGT+TGG | + | tig0014834:69957-69976 | None:intergenic | 15.0% |
!! | AGAACAAAAAAAAAATTAAG+AGG | + | tig0014834:70363-70382 | None:intergenic | 15.0% |
!!! | TCTTAATTTTTTTTTTGTTC+TGG | - | tig0014834:70362-70381 | Msa1355590:CDS | 15.0% |
!! | TATATTGAACATAAATATTC+TGG | + | tig0014834:70393-70412 | None:intergenic | 15.0% |
!! | TTAATTAATTTAACATTAGG+TGG | + | tig0014834:70636-70655 | None:intergenic | 15.0% |
!!! | TAAAAAAAAAGTATATCTCA+TGG | + | tig0014834:70775-70794 | None:intergenic | 15.0% |
!!! | TATATATTCATCGTTATTTT+AGG | - | tig0014834:71079-71098 | Msa1355590:intron | 15.0% |
!! | TCAAAATTTAAAAGATTTGT+TGG | + | tig0014834:71244-71263 | None:intergenic | 15.0% |
!!! | GATGAAATTGTTTTTTTTTT+TGG | + | tig0014834:71295-71314 | None:intergenic | 15.0% |
!!! | GATGTTTTCAAATTTATAAA+TGG | + | tig0014834:71356-71375 | None:intergenic | 15.0% |
!!! | GAATTTTTATTCATCTATAA+TGG | + | tig0014834:71406-71425 | None:intergenic | 15.0% |
!!! | TGATTAAATTACCATGATTT+TGG | + | tig0014834:69270-69289 | None:intergenic | 20.0% |
!! | TGAGTTATTCATTTCATTAT+AGG | + | tig0014834:69515-69534 | None:intergenic | 20.0% |
!!! | AATTTTGTTAAGCTGTTTAA+TGG | - | tig0014834:69966-69985 | Msa1355590:intron | 20.0% |
!!! | TATAGAGATTTTGAATTTGA+AGG | + | tig0014834:70065-70084 | None:intergenic | 20.0% |
!! | ACCATTTAATGTTTATACTA+AGG | - | tig0014834:70190-70209 | Msa1355590:CDS | 20.0% |
!! | ACCTTAGTATAAACATTAAA+TGG | + | tig0014834:70194-70213 | None:intergenic | 20.0% |
!!! | ATTTTCATTTTTCTTCATCT+TGG | - | tig0014834:70268-70287 | Msa1355590:intron | 20.0% |
!!! | ATTTTTATGCTATATATAGG+TGG | - | tig0014834:70428-70447 | Msa1355590:intron | 20.0% |
!!! | TTTTTATGCTATATATAGGT+GGG | - | tig0014834:70429-70448 | Msa1355590:intron | 20.0% |
!! | TGAAATTAATTACCTTCTTA+TGG | + | tig0014834:70734-70753 | None:intergenic | 20.0% |
!! | AGCTTAATTTAATCAATAGT+AGG | + | tig0014834:70983-71002 | None:intergenic | 20.0% |
!!! | CTTTTTTAACTGTCATTTTA+AGG | - | tig0014834:71205-71224 | Msa1355590:CDS | 20.0% |
!! | TTGAGATGATAAATAATGAA+GGG | + | tig0014834:71332-71351 | None:intergenic | 20.0% |
!! | ATTGAGATGATAAATAATGA+AGG | + | tig0014834:71333-71352 | None:intergenic | 20.0% |
!!! | AATATTTTTTATAGGTACTG+AGG | - | tig0014834:71506-71525 | Msa1355590:intron | 20.0% |
!!! | ATTCATGTCAAAATTTGTTA+CGG | + | tig0014834:71586-71605 | None:intergenic | 20.0% |
!!! | AATTACCATGATTTTGGAAA+GGG | + | tig0014834:69264-69283 | None:intergenic | 25.0% |
!!! | AAATTACCATGATTTTGGAA+AGG | + | tig0014834:69265-69284 | None:intergenic | 25.0% |
! | GACAAAATGAGAAATAAAAG+AGG | + | tig0014834:69294-69313 | None:intergenic | 25.0% |
!! | ATTTTGTCTCTTACTGAATT+TGG | - | tig0014834:69306-69325 | Msa1355590:CDS | 25.0% |
! | TTATTTGAAAGAACAAAGCA+CGG | + | tig0014834:69879-69898 | None:intergenic | 25.0% |
! | AAAATCTCTATAGACATAGA+TGG | - | tig0014834:70073-70092 | Msa1355590:intron | 25.0% |
!! | TTTTCGTCATCAGTTTATTT+AGG | - | tig0014834:70304-70323 | Msa1355590:intron | 25.0% |
! | TTTCGCGTTGTTAATTATTT+CGG | - | tig0014834:70541-70560 | Msa1355590:intron | 25.0% |
! | AATTAATTACCTTCTTATGG+CGG | + | tig0014834:70731-70750 | None:intergenic | 25.0% |
!! | TCTAGAATCTTCTAGAAAAA+GGG | - | tig0014834:71689-71708 | Msa1355590:CDS | 25.0% |
ATTAGTCAATGACAACATGT+TGG | - | tig0014834:69234-69253 | Msa1355590:CDS | 30.0% | |
!! | ATTACCATGATTTTGGAAAG+GGG | + | tig0014834:69263-69282 | None:intergenic | 30.0% |
AGTTGTGACTACTATTCATA+AGG | + | tig0014834:69417-69436 | None:intergenic | 30.0% | |
!! | ATCACTGAGTTATTTTGTAC+CGG | + | tig0014834:69574-69593 | None:intergenic | 30.0% |
ATGACTGCAGATTATTGTTA+GGG | + | tig0014834:69639-69658 | None:intergenic | 30.0% | |
AATGACTGCAGATTATTGTT+AGG | + | tig0014834:69640-69659 | None:intergenic | 30.0% | |
CAGTCATTGACATTATCAAT+GGG | - | tig0014834:69652-69671 | Msa1355590:CDS | 30.0% | |
CACGATATATTGATGTTCTT+TGG | + | tig0014834:69774-69793 | None:intergenic | 30.0% | |
CAAAGAACATCAATATATCG+TGG | - | tig0014834:69772-69791 | Msa1355590:CDS | 30.0% | |
TATTTGAAAGAACAAAGCAC+GGG | + | tig0014834:69878-69897 | None:intergenic | 30.0% | |
TCGATGAATTTCTACTTAAG+CGG | + | tig0014834:69921-69940 | None:intergenic | 30.0% | |
AATTAACAACGCGAAACTTA+CGG | + | tig0014834:70537-70556 | None:intergenic | 30.0% | |
ATTGATATCCTCGAATTAGT+CGG | - | tig0014834:70586-70605 | Msa1355590:CDS | 30.0% | |
! | CACAAGGTACTAAATCAAAT+TGG | - | tig0014834:70957-70976 | Msa1355590:intron | 30.0% |
TCTCCTAAGCTTACTATTTA+AGG | - | tig0014834:71012-71031 | Msa1355590:intron | 30.0% | |
ACACCTTAAATAGTAAGCTT+AGG | + | tig0014834:71018-71037 | None:intergenic | 30.0% | |
! | TAAGGTGTTTAAATAGCATC+TGG | - | tig0014834:71030-71049 | Msa1355590:intron | 30.0% |
GGAAACAAAGATCTTTACTT+AGG | - | tig0014834:71147-71166 | Msa1355590:intron | 30.0% | |
! | GATCTTTACTTAGGAACTTT+TGG | - | tig0014834:71156-71175 | Msa1355590:CDS | 30.0% |
!! | TATTATTTGTTGTGCATGCA+TGG | + | tig0014834:71431-71450 | None:intergenic | 30.0% |
!! | CTCTAGAATCTTCTAGAAAA+AGG | - | tig0014834:71688-71707 | Msa1355590:CDS | 30.0% |
GAATATCCTCAAATTCAAGT+AGG | - | tig0014834:71754-71773 | Msa1355590:CDS | 30.0% | |
TTGTATCCTACTTGAATTTG+AGG | + | tig0014834:71763-71782 | None:intergenic | 30.0% | |
TCAAGTAGGATACAATTACA+AGG | - | tig0014834:71768-71787 | Msa1355590:CDS | 30.0% | |
GTTGTTCAAACTGCATTAAA+GGG | + | tig0014834:71797-71816 | None:intergenic | 30.0% | |
TGTTGTTCAAACTGCATTAA+AGG | + | tig0014834:71798-71817 | None:intergenic | 30.0% | |
CTTGAGTACTACTATCATAT+AGG | + | tig0014834:71833-71852 | None:intergenic | 30.0% | |
GGTATATTGGGAATATGAAT+GGG | - | tig0014834:72003-72022 | Msa1355590:intron | 30.0% | |
GTATATTGGGAATATGAATG+GGG | - | tig0014834:72004-72023 | Msa1355590:intron | 30.0% | |
TTGGAATGAGTTTGAATTGT+GGG | - | tig0014834:72027-72046 | Msa1355590:intron | 30.0% | |
!! | ATCATCACCACTTTTCTCTT+GGG | - | tig0014834:69209-69228 | Msa1355590:CDS | 35.0% |
TGATGCATGATTGAACAGAT+TGG | - | tig0014834:69389-69408 | Msa1355590:CDS | 35.0% | |
TAATTACTTGTTCATGTCGC+CGG | - | tig0014834:69552-69571 | Msa1355590:CDS | 35.0% | |
GCAGTCATTGACATTATCAA+TGG | - | tig0014834:69651-69670 | Msa1355590:CDS | 35.0% | |
TTGACATTATCAATGGGAAG+TGG | - | tig0014834:69658-69677 | Msa1355590:CDS | 35.0% | |
TATTGATGTTCTTTGGCCAA+AGG | + | tig0014834:69767-69786 | None:intergenic | 35.0% | |
CAATATATCGTGGTGTAACA+AGG | - | tig0014834:69782-69801 | Msa1355590:CDS | 35.0% | |
CGATGAATTTCTACTTAAGC+GGG | + | tig0014834:69920-69939 | None:intergenic | 35.0% | |
GTTAAGCTGTTTAATGGCAT+CGG | - | tig0014834:69972-69991 | Msa1355590:intron | 35.0% | |
TTCTACAGGTATTATCCCAA+AGG | + | tig0014834:70119-70138 | None:intergenic | 35.0% | |
! | TTTGGGATAATACCTGTAGA+AGG | - | tig0014834:70118-70137 | Msa1355590:intron | 35.0% |
TTGGGATAATACCTGTAGAA+GGG | - | tig0014834:70119-70138 | Msa1355590:intron | 35.0% | |
ATTTAGCAGCACTAAAGTAC+TGG | - | tig0014834:70486-70505 | Msa1355590:intron | 35.0% | |
! | TTTAGCAGCACTAAAGTACT+GGG | - | tig0014834:70487-70506 | Msa1355590:intron | 35.0% |
ATTAACAACGCGAAACTTAC+GGG | + | tig0014834:70536-70555 | None:intergenic | 35.0% | |
TTTCGGCTAATAGCACAAAT+AGG | - | tig0014834:70558-70577 | Msa1355590:intron | 35.0% | |
TCAGATCAGTAACTATGAGA+AGG | - | tig0014834:70663-70682 | Msa1355590:intron | 35.0% | |
ATAAATTGCAGAAAGAGCAG+TGG | - | tig0014834:70901-70920 | Msa1355590:intron | 35.0% | |
!! | AAAGAGCAGTGGATTTTCAA+GGG | - | tig0014834:70912-70931 | Msa1355590:intron | 35.0% |
!! | TATTTTAGGCATCACCAACA+TGG | - | tig0014834:71093-71112 | Msa1355590:intron | 35.0% |
!!! | TTTTATAGGTACTGAGGAAG+AGG | - | tig0014834:71512-71531 | Msa1355590:intron | 35.0% |
! | GCAGGCTCAAATTTTCAATA+TGG | - | tig0014834:71732-71751 | Msa1355590:CDS | 35.0% |
CAGTTACAACAACAACAAAG+TGG | - | tig0014834:71894-71913 | Msa1355590:CDS | 35.0% | |
TTACAACAACAACAAAGTGG+AGG | - | tig0014834:71897-71916 | Msa1355590:CDS | 35.0% | |
ATGGGTGTGATAGACAATAA+TGG | - | tig0014834:71972-71991 | Msa1355590:intron | 35.0% | |
GGGTATATTGGGAATATGAA+TGG | - | tig0014834:72002-72021 | Msa1355590:intron | 35.0% | |
GTTGGAATGAGTTTGAATTG+TGG | - | tig0014834:72026-72045 | Msa1355590:intron | 35.0% | |
TGTGGGAATAACAATGTTGT+TGG | - | tig0014834:72044-72063 | Msa1355590:intron | 35.0% | |
GGTAATGAAGGATGATGAGT+TGG | + | tig0014834:69163-69182 | None:intergenic | 40.0% | |
! | TGAAGATGAGGTGGTAATGA+AGG | + | tig0014834:69175-69194 | None:intergenic | 40.0% |
!! | GATTGAGTTGGTTGAAGATG+AGG | + | tig0014834:69187-69206 | None:intergenic | 40.0% |
! | TGGTGATGATGAGATTGAGT+TGG | + | tig0014834:69199-69218 | None:intergenic | 40.0% |
!! | CATCATCACCACTTTTCTCT+TGG | - | tig0014834:69208-69227 | Msa1355590:CDS | 40.0% |
CTAATGTCCCAAGAGAAAAG+TGG | + | tig0014834:69219-69238 | None:intergenic | 40.0% | |
GAAACCCCTTTCCAAAATCA+TGG | - | tig0014834:69256-69275 | Msa1355590:CDS | 40.0% | |
CCAAGAAAATCTGCAACCTT+TGG | + | tig0014834:69451-69470 | None:intergenic | 40.0% | |
! | CCAAAGGTTGCAGATTTTCT+TGG | - | tig0014834:69448-69467 | Msa1355590:CDS | 40.0% |
AATGGGAAGTGGTACTACTA+AGG | - | tig0014834:69669-69688 | Msa1355590:CDS | 40.0% | |
GATTCCACATGTGAAACTAG+TGG | - | tig0014834:69691-69710 | Msa1355590:CDS | 40.0% | |
! | ATCACCACTAGTTTCACATG+TGG | + | tig0014834:69698-69717 | None:intergenic | 40.0% |
! | AAGGTATCCAAAGCTCTTCT+AGG | + | tig0014834:69748-69767 | None:intergenic | 40.0% |
!! | AGAAGAGCTTTGGATACCTT+TGG | - | tig0014834:69748-69767 | Msa1355590:CDS | 40.0% |
CTCTATAGACATAGATGGAC+AGG | - | tig0014834:70078-70097 | Msa1355590:intron | 40.0% | |
ATAGACATAGATGGACAGGA+AGG | - | tig0014834:70082-70101 | Msa1355590:intron | 40.0% | |
AAGGTATGAAGCTCACCTTT+GGG | - | tig0014834:70101-70120 | Msa1355590:intron | 40.0% | |
GATAATACCTGTAGAAGGGA+AGG | - | tig0014834:70123-70142 | Msa1355590:intron | 40.0% | |
!! | TTAGCAGCACTAAAGTACTG+GGG | - | tig0014834:70488-70507 | Msa1355590:intron | 40.0% |
ACTTACGGGAAAGTTTGTAG+TGG | + | tig0014834:70522-70541 | None:intergenic | 40.0% | |
TACAAGAACCGACTAATTCG+AGG | + | tig0014834:70597-70616 | None:intergenic | 40.0% | |
!! | AATTTGTTGCCGCCATAAGA+AGG | - | tig0014834:70719-70738 | Msa1355590:intron | 40.0% |
!! | GAAAGAGCAGTGGATTTTCA+AGG | - | tig0014834:70911-70930 | Msa1355590:intron | 40.0% |
!! | AAGAGCAGTGGATTTTCAAG+GGG | - | tig0014834:70913-70932 | Msa1355590:intron | 40.0% |
!! | TATTTGTTGTGCATGCATGG+AGG | + | tig0014834:71428-71447 | None:intergenic | 40.0% |
ATAGCTGCAATCAAGTTCAG+AGG | - | tig0014834:71552-71571 | Msa1355590:CDS | 40.0% | |
GAAAGTAACACTCTCCCAAT+AGG | - | tig0014834:71630-71649 | Msa1355590:CDS | 40.0% | |
TAACCCGAGTTTGATGAACA+TGG | - | tig0014834:71953-71972 | Msa1355590:intron | 40.0% | |
AACCCGAGTTTGATGAACAT+GGG | - | tig0014834:71954-71973 | Msa1355590:intron | 40.0% | |
ACACCCATGTTCATCAAACT+CGG | + | tig0014834:71960-71979 | None:intergenic | 40.0% | |
GGTGTGATAGACAATAATGG+TGG | - | tig0014834:71975-71994 | Msa1355590:intron | 40.0% | |
GTGATAGACAATAATGGTGG+TGG | - | tig0014834:71978-71997 | Msa1355590:intron | 40.0% | |
!! | ATAGACAATAATGGTGGTGG+AGG | - | tig0014834:71981-72000 | Msa1355590:intron | 40.0% |
!! | TAGACAATAATGGTGGTGGA+GGG | - | tig0014834:71982-72001 | Msa1355590:intron | 40.0% |
ATTGGGAATATGAATGGGGT+TGG | - | tig0014834:72008-72027 | Msa1355590:intron | 40.0% | |
GGAGGAAGTTGCATATGTTA+AGG | - | tig0014834:72079-72098 | Msa1355590:CDS | 40.0% | |
GTTGATTATGACATGCCTTC+CGG | - | tig0014834:72101-72120 | Msa1355590:CDS | 40.0% | |
ATGCTGGTGTTCTTACAATG+TGG | - | tig0014834:72159-72178 | Msa1355590:CDS | 40.0% | |
! | GGATGATGAGTTGGAGAAAG+TGG | + | tig0014834:69154-69173 | None:intergenic | 45.0% |
!! | TGAGTTGGTTGAAGATGAGG+TGG | + | tig0014834:69184-69203 | None:intergenic | 45.0% |
CAACTCCAACGAAGTTCCAA+AGG | - | tig0014834:69432-69451 | Msa1355590:CDS | 45.0% | |
!! | TGCAACCTTTGGAACTTCGT+TGG | + | tig0014834:69440-69459 | None:intergenic | 45.0% |
TGCAACACCTAGAAGAGCTT+TGG | - | tig0014834:69738-69757 | Msa1355590:CDS | 45.0% | |
! | GAAGGTATGAAGCTCACCTT+TGG | - | tig0014834:70100-70119 | Msa1355590:intron | 45.0% |
AGGGAAGGACAGTCAAGAAA+AGG | - | tig0014834:70138-70157 | Msa1355590:intron | 45.0% | |
CAGTCAAGAAAAGGTCGTCA+AGG | - | tig0014834:70147-70166 | Msa1355590:CDS | 45.0% | |
!! | TAGCAGCACTAAAGTACTGG+GGG | - | tig0014834:70489-70508 | Msa1355590:intron | 45.0% |
CAATGTATCGTGGAGTCACA+AGG | - | tig0014834:70941-70960 | Msa1355590:intron | 45.0% | |
TTGCTTGCCATCTTCCATGT+TGG | + | tig0014834:71110-71129 | None:intergenic | 45.0% | |
GGAAGATGGCAAGCAAGAAT+TGG | - | tig0014834:71114-71133 | Msa1355590:intron | 45.0% | |
AGTAACACTCTCCCAATAGG+AGG | - | tig0014834:71633-71652 | Msa1355590:CDS | 45.0% | |
CAAGAGATGATAGCACTTGC+AGG | - | tig0014834:71714-71733 | Msa1355590:CDS | 45.0% | |
GGAGGATTCTACAACTACGA+TGG | - | tig0014834:71915-71934 | Msa1355590:intron | 45.0% | |
CACCCATGTTCATCAAACTC+GGG | + | tig0014834:71959-71978 | None:intergenic | 45.0% | |
!! | AATGGTGGTGGAGGGTATAT+TGG | - | tig0014834:71990-72009 | Msa1355590:intron | 45.0% |
!! | ATGGTGGTGGAGGGTATATT+GGG | - | tig0014834:71991-72010 | Msa1355590:intron | 45.0% |
! | TGTTGTTGGTGAACATGCAG+CGG | - | tig0014834:72058-72077 | Msa1355590:CDS | 45.0% |
GACATGCCTTCCGGAAATTA+TGG | - | tig0014834:72110-72129 | Msa1355590:CDS | 45.0% | |
ATGCCTTCCGGAAATTATGG+AGG | - | tig0014834:72113-72132 | Msa1355590:CDS | 45.0% | |
CAACCTCCATAATTTCCGGA+AGG | + | tig0014834:72119-72138 | None:intergenic | 45.0% | |
CTTCCGGAAATTATGGAGGT+TGG | - | tig0014834:72117-72136 | Msa1355590:CDS | 45.0% | |
CGACCAACCTCCATAATTTC+CGG | + | tig0014834:72123-72142 | None:intergenic | 45.0% | |
! | CGGAAATTATGGAGGTTGGT+CGG | - | tig0014834:72121-72140 | Msa1355590:CDS | 45.0% |
! | GGAAATTATGGAGGTTGGTC+GGG | - | tig0014834:72122-72141 | Msa1355590:CDS | 45.0% |
!!! | AATTAATTTCATTTTATATT+TGG | - | tig0014834:70743-70762 | Msa1355590:intron | 5.0% |
!!! | TGAAATTTATTTTTTTTTTA+GGG | + | tig0014834:70870-70889 | None:intergenic | 5.0% |
!!! | ATGAAATTTATTTTTTTTTT+AGG | + | tig0014834:70871-70890 | None:intergenic | 5.0% |
!! | TATGAAATAATAATTAATAT+TGG | - | tig0014834:71483-71502 | Msa1355590:intron | 5.0% |
TGACTGTCCTTCCCTTCTAC+AGG | + | tig0014834:70133-70152 | None:intergenic | 50.0% | |
! | AGGGGTGCATCAATGTATCG+TGG | - | tig0014834:70931-70950 | Msa1355590:intron | 50.0% |
GGCATCACCAACATGGAAGA+TGG | - | tig0014834:71100-71119 | Msa1355590:intron | 50.0% | |
! | GATCTTTGTTTCCCGCGACT+CGG | + | tig0014834:71140-71159 | None:intergenic | 50.0% |
AACACTCTCCCAATAGGAGG+AGG | - | tig0014834:71636-71655 | Msa1355590:CDS | 50.0% | |
TTGCAGCACCTCCTCCTATT+GGG | + | tig0014834:71647-71666 | None:intergenic | 50.0% | |
TTTGCAGCACCTCCTCCTAT+TGG | + | tig0014834:71648-71667 | None:intergenic | 50.0% | |
GGTGCAGATGCTTCAAATGC+TGG | - | tig0014834:72143-72162 | Msa1355590:CDS | 50.0% | |
AGCAAGAATTGGCCGAGTCG+CGG | - | tig0014834:71125-71144 | Msa1355590:intron | 55.0% | |
! | TGTTGGTGAACATGCAGCGG+AGG | - | tig0014834:72061-72080 | Msa1355590:CDS | 55.0% |
GCAAGAATTGGCCGAGTCGC+GGG | - | tig0014834:71126-71145 | Msa1355590:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0014834 | gene | 69124 | 72199 | 69124 | ID=Msa1355590;Name=Msa1355590 |
tig0014834 | mRNA | 69124 | 72199 | 69124 | ID=Msa1355590-mRNA-1;Parent=Msa1355590;Name=Msa1355590-mRNA-1;_AED=0.10;_eAED=0.11;_QI=0|0|0|1|1|1|8|0|534 |
tig0014834 | exon | 72046 | 72199 | 72046 | ID=Msa1355590-mRNA-1:exon:9528;Parent=Msa1355590-mRNA-1 |
tig0014834 | exon | 71520 | 71916 | 71520 | ID=Msa1355590-mRNA-1:exon:9527;Parent=Msa1355590-mRNA-1 |
tig0014834 | exon | 71155 | 71237 | 71155 | ID=Msa1355590-mRNA-1:exon:9526;Parent=Msa1355590-mRNA-1 |
tig0014834 | exon | 70788 | 70876 | 70788 | ID=Msa1355590-mRNA-1:exon:9525;Parent=Msa1355590-mRNA-1 |
tig0014834 | exon | 70583 | 70656 | 70583 | ID=Msa1355590-mRNA-1:exon:9524;Parent=Msa1355590-mRNA-1 |
tig0014834 | exon | 70361 | 70411 | 70361 | ID=Msa1355590-mRNA-1:exon:9523;Parent=Msa1355590-mRNA-1 |
tig0014834 | exon | 70146 | 70222 | 70146 | ID=Msa1355590-mRNA-1:exon:9522;Parent=Msa1355590-mRNA-1 |
tig0014834 | exon | 69124 | 69803 | 69124 | ID=Msa1355590-mRNA-1:exon:9521;Parent=Msa1355590-mRNA-1 |
tig0014834 | CDS | 72046 | 72199 | 72046 | ID=Msa1355590-mRNA-1:cds;Parent=Msa1355590-mRNA-1 |
tig0014834 | CDS | 71520 | 71916 | 71520 | ID=Msa1355590-mRNA-1:cds;Parent=Msa1355590-mRNA-1 |
tig0014834 | CDS | 71155 | 71237 | 71155 | ID=Msa1355590-mRNA-1:cds;Parent=Msa1355590-mRNA-1 |
tig0014834 | CDS | 70788 | 70876 | 70788 | ID=Msa1355590-mRNA-1:cds;Parent=Msa1355590-mRNA-1 |
tig0014834 | CDS | 70583 | 70656 | 70583 | ID=Msa1355590-mRNA-1:cds;Parent=Msa1355590-mRNA-1 |
tig0014834 | CDS | 70361 | 70411 | 70361 | ID=Msa1355590-mRNA-1:cds;Parent=Msa1355590-mRNA-1 |
tig0014834 | CDS | 70146 | 70222 | 70146 | ID=Msa1355590-mRNA-1:cds;Parent=Msa1355590-mRNA-1 |
tig0014834 | CDS | 69124 | 69803 | 69124 | ID=Msa1355590-mRNA-1:cds;Parent=Msa1355590-mRNA-1 |
Gene Sequence |
Protein sequence |