AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1006170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1006170 MtrunA17_Chr7g0216891 97.935 581 11 1 1 580 4 584 0.0 1172
Msa1006170 MtrunA17_Chr4g0060271 39.861 577 259 21 34 562 68 604 4.26e-82 269
Msa1006170 MtrunA17_Chr4g0051181 41.304 322 88 9 197 484 225 479 9.56e-51 182
Msa1006170 MtrunA17_Chr3g0099641 36.426 291 114 4 188 478 225 444 6.61e-49 176
Msa1006170 MtrunA17_Chr7g0270831 71.429 98 28 0 194 291 195 292 4.82e-47 170
Msa1006170 MtrunA17_Chr2g0322391 30.118 508 233 14 11 479 132 556 5.68e-47 174
Msa1006170 MtrunA17_Chr2g0288871 39.600 250 128 6 28 274 135 364 6.79e-45 167
Msa1006170 MtrunA17_Chr4g0075201 40.000 270 108 7 42 300 126 352 2.23e-43 162
Msa1006170 MtrunA17_Chr2g0302391 34.824 313 119 10 188 490 185 422 1.13e-39 150
Msa1006170 MtrunA17_Chr4g0025051 39.269 219 93 4 166 384 292 470 6.68e-39 150
Msa1006170 MtrunA17_Chr4g0025061 47.917 144 68 2 166 309 317 453 1.89e-37 147
Msa1006170 MtrunA17_Chr4g0024391 45.139 144 72 3 166 309 186 322 1.00e-33 134
Msa1006170 MtrunA17_Chr4g0001361 42.857 133 59 4 194 309 139 271 1.84e-25 107
Msa1006170 MtrunA17_Chr1g0150281 53.333 75 35 0 198 272 123 197 3.53e-23 99.8
Msa1006170 MtrunA17_Chr3g0136961 61.017 59 23 0 214 272 137 195 4.05e-23 100
Msa1006170 MtrunA17_Chr2g0333851 60.000 60 24 0 214 273 168 227 2.39e-22 98.2
Msa1006170 MtrunA17_Chr1g0150271 41.228 114 60 3 166 272 45 158 2.72e-22 96.7
Msa1006170 MtrunA17_Chr5g0432161 55.000 80 31 2 197 272 399 477 4.14e-22 100
Msa1006170 MtrunA17_Chr5g0432161 52.542 59 26 2 215 273 244 300 1.59e-12 70.1
Msa1006170 MtrunA17_Chr3g0106491 56.338 71 30 1 202 272 352 421 5.67e-22 99.8
Msa1006170 MtrunA17_Chr3g0106491 50.794 63 29 2 215 277 198 258 5.08e-13 71.6
Msa1006170 MtrunA17_Chr7g0243891 49.412 85 42 1 199 283 358 441 8.34e-22 99.4
Msa1006170 MtrunA17_Chr7g0243891 53.448 58 25 2 216 273 217 272 6.19e-12 68.2
Msa1006170 MtrunA17_Chr5g0445311 44.231 104 56 2 177 280 327 428 1.29e-21 98.6
Msa1006170 MtrunA17_Chr5g0445311 52.542 59 26 2 215 273 200 256 1.42e-11 67.0
Msa1006170 MtrunA17_Chr3g0101131 38.462 130 61 3 154 272 350 471 1.33e-21 99.0
Msa1006170 MtrunA17_Chr3g0101131 50.847 59 27 2 215 273 243 299 2.93e-11 66.2
Msa1006170 MtrunA17_Chr5g0418191 42.276 123 68 3 152 272 255 376 5.61e-21 95.9
Msa1006170 MtrunA17_Chr5g0418191 50.746 67 28 4 209 274 146 208 5.15e-12 68.2
Msa1006170 MtrunA17_Chr3g0079691 47.917 96 47 2 202 295 482 576 6.11e-21 97.1
Msa1006170 MtrunA17_Chr3g0079691 47.826 69 33 3 205 273 271 336 1.22e-11 67.8
Msa1006170 MtrunA17_Chr7g0249301 47.674 86 41 2 192 274 266 350 7.09e-21 94.7
Msa1006170 MtrunA17_Chr4g0004911 50.649 77 37 1 198 274 319 394 1.04e-20 95.5
Msa1006170 MtrunA17_Chr4g0004911 51.724 58 27 1 216 273 185 241 7.25e-14 74.3
Msa1006170 MtrunA17_Chr7g0249311 35.766 137 78 3 192 319 366 501 1.06e-20 96.3
Msa1006170 MtrunA17_Chr2g0294231 50.649 77 37 1 202 278 190 265 1.14e-20 94.4
Msa1006170 MtrunA17_Chr1g0150801 51.389 72 34 1 202 273 89 159 4.84e-20 87.4
Msa1006170 MtrunA17_Chr4g0042831 41.228 114 63 3 159 272 225 334 5.84e-20 92.4
Msa1006170 MtrunA17_Chr7g0218081 43.011 93 48 2 184 272 375 466 1.41e-19 92.4
Msa1006170 MtrunA17_Chr7g0218081 43.023 86 46 3 187 272 201 283 2.01e-11 66.6
Msa1006170 MtrunA17_Chr7g0270191 34.586 133 76 3 185 309 107 236 2.68e-19 88.6
Msa1006170 MtrunA17_Chr7g0224801 46.914 81 40 2 206 286 86 163 3.79e-19 85.1
Msa1006170 MtrunA17_Chr4g0051881 47.619 84 39 2 202 281 165 247 5.02e-19 88.6
Msa1006170 MtrunA17_Chr1g0194481 37.671 146 64 4 202 321 145 289 8.38e-19 87.8
Msa1006170 MtrunA17_Chr4g0074001 50.000 80 39 1 193 272 337 415 8.84e-19 89.7
Msa1006170 MtrunA17_Chr7g0263531 51.948 77 34 2 203 277 349 424 8.84e-19 89.4
Msa1006170 MtrunA17_Chr7g0263531 52.381 63 27 3 210 272 185 244 3.14e-12 68.9
Msa1006170 MtrunA17_Chr4g0068541 37.956 137 59 4 201 312 194 329 1.01e-18 89.0
Msa1006170 MtrunA17_Chr5g0447701 52.113 71 33 1 202 272 239 308 1.34e-18 88.2
Msa1006170 MtrunA17_Chr5g0447701 34.677 124 78 3 216 339 93 213 6.28e-11 64.7
Msa1006170 MtrunA17_Chr7g0270051 37.209 129 68 3 215 333 53 178 1.97e-18 85.5
Msa1006170 MtrunA17_Chr5g0401821 54.412 68 29 1 210 277 196 261 3.08e-18 85.1
Msa1006170 MtrunA17_Chr4g0053281 57.627 59 25 0 216 274 267 325 4.55e-18 85.9
Msa1006170 MtrunA17_Chr1g0147881 46.988 83 36 2 200 276 243 323 9.74e-18 84.7
Msa1006170 MtrunA17_Chr5g0443131 46.914 81 42 1 202 282 144 223 1.93e-17 83.6
Msa1006170 MtrunA17_Chr8g0386241 40.909 88 48 3 194 281 85 168 2.28e-17 80.5
Msa1006170 MtrunA17_Chr5g0419241 61.404 57 22 0 187 243 49 105 4.33e-17 77.4
Msa1006170 MtrunA17_Chr8g0383251 40.449 89 50 2 202 288 95 182 4.74e-17 79.3
Msa1006170 MtrunA17_Chr1g0184691 56.140 57 25 0 216 272 294 350 4.87e-17 83.2
Msa1006170 MtrunA17_Chr8g0379461 48.000 75 38 1 205 279 67 140 9.84e-17 80.1
Msa1006170 MtrunA17_Chr8g0335811 35.659 129 76 3 150 272 83 210 1.25e-16 79.3
Msa1006170 MtrunA17_Chr7g0228941 45.238 84 38 2 195 272 28 109 1.28e-16 76.6
Msa1006170 MtrunA17_Chr2g0293481 42.857 91 52 0 216 306 268 358 1.36e-16 82.8
Msa1006170 MtrunA17_Chr7g0248721 50.000 72 34 2 202 273 128 197 1.51e-16 79.0
Msa1006170 MtrunA17_Chr3g0129361 47.887 71 36 1 202 272 131 200 1.52e-16 79.0
Msa1006170 MtrunA17_Chr1g0188941 54.237 59 26 1 214 272 50 107 1.60e-16 75.9
Msa1006170 MtrunA17_Chr3g0139021 48.235 85 33 3 200 275 295 377 3.59e-16 80.9
Msa1006170 MtrunA17_Chr5g0418781 47.297 74 38 1 199 272 108 180 4.79e-16 79.0
Msa1006170 MtrunA17_Chr4g0071521 43.678 87 41 2 200 280 226 310 5.41e-16 79.3
Msa1006170 MtrunA17_Chr8g0383351 52.381 63 29 1 210 272 155 216 5.42e-16 77.8
Msa1006170 MtrunA17_Chr3g0129321 46.479 71 37 1 202 272 105 174 5.77e-16 77.0
Msa1006170 MtrunA17_Chr7g0248691 40.659 91 51 1 198 285 134 224 1.62e-15 78.2
Msa1006170 MtrunA17_Chr8g0348311 40.659 91 51 1 198 285 135 225 2.09e-15 77.8
Msa1006170 MtrunA17_Chr2g0289181 50.877 57 28 0 216 272 15 71 2.58e-15 75.9
Msa1006170 MtrunA17_Chr2g0284321 51.667 60 29 0 215 274 35 94 3.44e-15 75.1
Msa1006170 MtrunA17_Chr7g0238921 48.611 72 35 2 202 272 110 180 4.12e-15 76.6
Msa1006170 MtrunA17_Chr2g0319961 45.946 74 40 0 206 279 71 144 6.47e-15 75.1
Msa1006170 MtrunA17_Chr8g0387501 38.372 86 53 0 213 298 127 212 2.13e-14 73.9
Msa1006170 MtrunA17_Chr6g0485431 48.649 74 36 2 202 274 141 213 8.31e-14 73.2
Msa1006170 MtrunA17_Chr1g0202461 41.304 92 49 2 186 272 227 318 6.73e-13 70.5
Msa1006170 MtrunA17_Chr5g0432071 48.276 58 28 2 215 272 104 159 9.76e-12 64.7
Msa1006170 MtrunA17_Chr3g0126391 44.595 74 38 2 199 270 118 190 2.34e-11 65.5
Msa1006170 MtrunA17_Chr8g0387981 45.205 73 37 2 200 270 118 189 2.47e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1006170 AT5G15130.1 40.206 582 257 20 5 556 10 530 1.44e-82 269
Msa1006170 AT5G15130.2 41.068 543 235 19 44 556 1 488 4.05e-80 261
Msa1006170 AT1G18860.1 37.769 511 234 17 24 479 29 510 5.50e-67 227
Msa1006170 AT4G04450.2 37.464 347 165 10 33 362 11 322 1.07e-54 191
Msa1006170 AT1G68150.1 39.867 301 123 8 43 330 100 355 1.44e-53 187
Msa1006170 AT4G04450.1 37.464 347 165 10 33 362 105 416 1.64e-53 191
Msa1006170 AT1G69810.1 36.443 343 172 8 30 364 19 323 1.42e-45 166
Msa1006170 AT1G62300.1 40.377 265 121 7 42 299 162 396 1.91e-41 157
Msa1006170 AT4G01720.1 39.149 235 99 8 43 274 105 298 3.27e-40 153
Msa1006170 AT4G22070.4 76.316 76 18 0 199 274 281 356 4.05e-37 145
Msa1006170 AT4G22070.3 76.316 76 18 0 199 274 281 356 4.05e-37 145
Msa1006170 AT4G22070.2 76.316 76 18 0 199 274 281 356 4.05e-37 145
Msa1006170 AT4G22070.1 76.316 76 18 0 199 274 281 356 4.05e-37 145
Msa1006170 AT1G69810.2 38.889 270 119 8 103 364 34 265 8.38e-36 137
Msa1006170 AT4G31800.2 66.667 60 20 0 213 272 109 168 2.66e-25 105
Msa1006170 AT4G31800.1 66.667 60 20 0 213 272 174 233 3.85e-25 106
Msa1006170 AT2G25000.2 63.636 66 23 1 208 272 95 160 5.64e-24 101
Msa1006170 AT2G25000.4 63.636 66 23 1 208 272 95 160 5.64e-24 101
Msa1006170 AT2G25000.3 63.636 66 23 1 208 272 117 182 1.06e-23 100
Msa1006170 AT2G25000.1 63.636 66 23 1 208 272 138 203 1.12e-23 101
Msa1006170 AT1G80840.1 53.333 75 35 0 200 274 131 205 1.84e-23 101
Msa1006170 AT2G38470.1 41.985 131 60 5 202 318 349 477 1.18e-22 102
Msa1006170 AT2G38470.1 51.724 58 26 2 216 273 185 240 5.30e-12 68.9
Msa1006170 AT1G29860.1 39.669 121 68 2 173 293 94 209 3.18e-22 97.4
Msa1006170 AT5G56270.1 44.545 110 57 2 202 311 474 579 4.15e-22 101
Msa1006170 AT4G26640.5 37.908 153 73 5 191 329 180 324 8.62e-22 98.2
Msa1006170 AT4G26640.5 46.377 69 33 3 207 273 25 91 4.17e-11 65.5
Msa1006170 AT4G26640.6 37.908 153 73 5 191 329 180 324 8.62e-22 98.2
Msa1006170 AT4G26640.6 46.377 69 33 3 207 273 25 91 4.17e-11 65.5
Msa1006170 AT4G26640.4 37.908 153 73 5 191 329 180 324 8.62e-22 98.2
Msa1006170 AT4G26640.4 46.377 69 33 3 207 273 25 91 4.17e-11 65.5
Msa1006170 AT4G26640.3 37.908 153 73 5 191 329 180 324 8.62e-22 98.2
Msa1006170 AT4G26640.3 46.377 69 33 3 207 273 25 91 4.17e-11 65.5
Msa1006170 AT5G49520.1 37.313 134 68 3 199 319 205 335 1.34e-21 97.8
Msa1006170 AT4G26640.1 37.908 153 73 5 191 329 284 428 2.25e-21 97.8
Msa1006170 AT4G26640.1 46.377 69 33 3 207 273 129 195 5.32e-11 65.5
Msa1006170 AT4G26640.7 37.908 153 73 5 191 329 316 460 2.31e-21 98.2
Msa1006170 AT4G26640.7 46.377 69 33 3 207 273 161 227 5.35e-11 65.9
Msa1006170 AT4G26640.2 37.908 153 73 5 191 329 356 500 3.43e-21 97.8
Msa1006170 AT4G26640.2 46.377 69 33 3 207 273 201 267 6.70e-11 65.5
Msa1006170 AT5G41570.1 48.235 85 43 1 191 275 74 157 6.08e-21 90.9
Msa1006170 AT5G26170.1 34.667 150 77 4 139 272 25 169 9.26e-21 90.1
Msa1006170 AT1G13960.2 49.438 89 38 2 192 274 227 314 9.80e-21 94.7
Msa1006170 AT1G13960.2 51.562 64 28 3 209 272 71 131 3.41e-12 68.6
Msa1006170 AT1G13960.1 49.438 89 38 2 192 274 380 467 1.17e-20 95.9
Msa1006170 AT1G13960.1 51.562 64 28 3 209 272 224 284 2.41e-12 70.1
Msa1006170 AT2G46130.1 55.556 72 31 1 202 273 17 87 2.17e-20 87.0
Msa1006170 AT2G04880.2 49.412 85 38 2 194 274 258 341 2.48e-20 94.7
Msa1006170 AT2G04880.2 51.667 60 27 2 214 273 110 167 1.85e-12 70.1
Msa1006170 AT2G03340.1 39.098 133 46 4 202 333 402 500 2.86e-20 94.7
Msa1006170 AT2G03340.1 53.030 66 28 3 209 274 245 307 2.25e-13 73.2
Msa1006170 AT2G04880.1 49.412 85 38 2 194 274 282 365 2.94e-20 94.7
Msa1006170 AT2G04880.1 51.667 60 27 2 214 273 110 167 2.08e-12 70.1
Msa1006170 AT1G29280.1 48.810 84 42 1 196 279 56 138 3.61e-20 90.9
Msa1006170 AT1G64000.1 51.351 74 35 1 202 275 101 173 3.90e-20 89.0
Msa1006170 AT1G55600.1 45.977 87 42 2 191 273 279 364 4.36e-20 94.0
Msa1006170 AT5G13080.1 47.297 74 38 1 202 275 54 126 5.02e-20 87.4
Msa1006170 AT4G26440.1 32.645 242 134 10 164 398 325 544 8.07e-20 93.6
Msa1006170 AT3G01080.1 53.521 71 32 1 202 272 293 362 2.22e-19 91.3
Msa1006170 AT4G18170.1 47.561 82 42 1 193 274 150 230 2.41e-19 89.7
Msa1006170 AT3G01080.2 53.521 71 32 1 202 272 331 400 2.48e-19 91.7
Msa1006170 AT5G46350.1 42.105 95 54 1 202 296 170 263 4.17e-19 89.4
Msa1006170 AT5G07100.2 50.649 77 37 1 198 274 124 199 4.81e-19 86.7
Msa1006170 AT5G07100.4 50.649 77 37 1 198 274 124 199 4.81e-19 86.7
Msa1006170 AT5G07100.5 50.649 77 37 1 198 274 124 199 4.81e-19 86.7
Msa1006170 AT5G07100.3 50.649 77 37 1 198 274 124 199 4.81e-19 86.7
Msa1006170 AT2G23320.1 61.017 59 23 0 216 274 241 299 4.83e-19 89.0
Msa1006170 AT5G07100.1 52.000 75 35 1 198 272 217 290 6.33e-19 88.2
Msa1006170 AT4G30935.1 38.938 113 64 2 197 309 313 420 9.25e-19 89.7
Msa1006170 AT1G69310.4 51.351 74 35 1 199 272 131 203 1.87e-18 86.7
Msa1006170 AT1G69310.2 51.351 74 35 1 199 272 131 203 1.87e-18 86.7
Msa1006170 AT1G69310.1 51.351 74 35 1 199 272 131 203 1.87e-18 86.7
Msa1006170 AT2G47260.1 41.584 101 54 2 199 295 158 257 1.92e-18 87.4
Msa1006170 AT5G64810.1 47.887 71 36 1 202 272 97 166 2.10e-18 84.0
Msa1006170 AT2G30250.1 50.649 77 37 1 198 274 311 386 2.63e-18 87.8
Msa1006170 AT2G30590.1 50.000 80 32 2 200 273 294 371 6.51e-18 86.3
Msa1006170 AT3G04670.1 55.385 65 28 1 220 284 267 330 7.18e-18 85.5
Msa1006170 AT4G24240.1 45.349 86 43 1 200 281 262 347 1.35e-17 85.1
Msa1006170 AT5G28650.1 53.846 65 29 1 220 284 267 330 2.06e-17 84.3
Msa1006170 AT2G44745.1 49.296 71 35 1 202 272 132 201 2.16e-17 81.6
Msa1006170 AT2G37260.3 58.065 62 25 1 213 274 267 327 4.69e-17 83.6
Msa1006170 AT2G37260.3 54.386 57 24 2 216 272 86 140 1.26e-12 70.1
Msa1006170 AT2G37260.2 58.065 62 25 1 213 274 265 325 4.81e-17 83.2
Msa1006170 AT2G37260.2 54.386 57 24 2 216 272 84 138 1.36e-12 69.7
Msa1006170 AT2G37260.1 58.065 62 25 1 213 274 347 407 9.68e-17 83.2
Msa1006170 AT2G37260.1 54.386 57 24 2 216 272 166 220 1.89e-12 70.1
Msa1006170 AT2G24570.1 45.545 101 47 4 199 297 227 321 1.26e-16 81.6
Msa1006170 AT4G31550.1 51.316 76 33 3 199 272 230 303 1.35e-16 81.6
Msa1006170 AT4G31550.2 51.316 76 33 3 199 272 229 302 1.38e-16 81.6
Msa1006170 AT4G39410.1 47.887 71 36 1 202 272 210 279 2.82e-16 80.5
Msa1006170 AT3G62340.1 50.000 72 35 1 202 273 105 175 3.08e-16 79.7
Msa1006170 AT3G01970.1 46.479 71 37 1 202 272 52 121 4.95e-16 75.9
Msa1006170 AT1G30650.1 49.254 67 34 0 216 282 218 284 1.09e-15 80.1
Msa1006170 AT2G46130.2 51.389 72 30 2 202 273 17 83 1.79e-15 72.8
Msa1006170 AT3G58710.1 55.000 60 27 0 215 274 71 130 1.79e-15 77.4
Msa1006170 AT3G58710.2 55.000 60 27 0 215 274 70 129 1.99e-15 77.4
Msa1006170 AT2G34830.1 49.254 67 34 0 216 282 216 282 2.57e-15 79.0
Msa1006170 AT2G34830.2 49.254 67 34 0 216 282 225 291 2.69e-15 79.0
Msa1006170 AT4G01250.1 46.479 71 38 0 215 285 128 198 4.42e-15 76.6
Msa1006170 AT5G52830.1 48.571 70 36 0 216 285 166 235 2.05e-14 75.5
Msa1006170 AT2G21900.1 46.667 60 31 1 214 273 108 166 2.19e-14 72.8
Msa1006170 AT4G23550.1 42.857 77 44 0 214 290 139 215 4.26e-14 73.9
Msa1006170 AT4G31800.3 65.000 40 14 0 213 252 174 213 4.65e-14 72.4
Msa1006170 AT1G69310.3 47.297 74 34 2 199 272 131 199 1.38e-13 72.0
Msa1006170 AT5G43290.1 47.222 72 36 2 202 272 100 170 2.27e-13 71.2
Msa1006170 AT5G45050.1 37.634 93 58 0 215 307 1180 1272 9.77e-13 72.0
Msa1006170 AT5G45050.4 37.634 93 58 0 215 307 1041 1133 1.03e-12 72.0
Msa1006170 AT5G45050.2 37.634 93 58 0 215 307 1152 1244 1.14e-12 71.6
Msa1006170 AT5G24110.1 43.836 73 38 2 200 270 99 170 2.15e-12 68.6
Msa1006170 AT1G66560.1 47.761 67 33 1 206 270 94 160 6.43e-11 63.5
Msa1006170 AT2G40740.1 51.724 58 26 1 215 270 173 230 9.25e-11 63.5

Find 98 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATAATAACAATAAATT+AGG 0.135542 7_1:+4852921 Msa1006170:CDS
CACAACAATTCCACATCTTT+TGG 0.160553 7_1:+4852648 Msa1006170:CDS
TCTTTCTCTTTAGGTTTGTT+AGG 0.187408 7_1:-4850764 None:intergenic
AACAATTTGTTGAATCAAAA+TGG 0.213590 7_1:+4853254 Msa1006170:CDS
TCCATATCTTCTTTCTCTTT+AGG 0.253785 7_1:-4850773 None:intergenic
GATGATATTGGTGTGAAATT+TGG 0.273603 7_1:-4852891 None:intergenic
TTGTTGGAAACAAGTTATTA+TGG 0.281677 7_1:-4852764 None:intergenic
GTATATACCTGTTTCCTTAC+TGG 0.282263 7_1:-4851568 None:intergenic
GCTTCTTTCTTATACTCATT+TGG 0.300183 7_1:-4850725 None:intergenic
ACATGTCATCAGCACATCTT+TGG 0.314882 7_1:-4852473 None:intergenic
AATTCTTCTGAGCTATTCAT+TGG 0.315815 7_1:-4850863 None:intergenic
GAAGTTGAAGTTGAAGAAAA+AGG 0.324758 7_1:+4850893 Msa1006170:CDS
GGATGTCAATGGAGGAAATA+TGG 0.344144 7_1:+4851478 Msa1006170:CDS
GAAAATAGAGACAATGGTTT+AGG 0.349471 7_1:+4853185 Msa1006170:CDS
ACAATAATAACAATAAATTA+GGG 0.362140 7_1:+4852922 Msa1006170:CDS
GTGTTCTTGATTGTTCAAAT+TGG 0.364271 7_1:-4852713 None:intergenic
GCTGCAGTTTCGTCGATTGT+AGG 0.370957 7_1:+4853131 Msa1006170:CDS
TCTTCAACTTCAACTTCCTT+TGG 0.371657 7_1:-4850887 None:intergenic
AGATTATTTGGAGAAAATCT+TGG 0.374052 7_1:-4852846 None:intergenic
CTGCTCTTAGAAACAGAAAA+TGG 0.375936 7_1:-4853368 None:intergenic
TGGATTAGACTCTAAATATA+TGG 0.376972 7_1:+4850811 Msa1006170:CDS
CTTTCTCTTTAGGTTTGTTA+GGG 0.381231 7_1:-4850763 None:intergenic
AACCCCTTCAAGGCAAGCTT+TGG 0.383268 7_1:+4853052 Msa1006170:CDS
TCACACCAATATCATCCATT+TGG 0.393132 7_1:+4852898 Msa1006170:CDS
GCAGCTTCAATGATGGTATC+AGG 0.393995 7_1:+4852579 Msa1006170:CDS
TTGTTCCAAATGGATGATAT+TGG 0.395825 7_1:-4852903 None:intergenic
GGAATGAAGAAATGTTGTTT+TGG 0.395896 7_1:-4852735 None:intergenic
AGCAATCAACTTCAACTTCA+TGG 0.396953 7_1:-4849553 None:intergenic
ACCTAAAGAGAAAGAAGATA+TGG 0.399352 7_1:+4850772 Msa1006170:CDS
TCAGCCAAAGCTTGCCTTGA+AGG 0.406538 7_1:-4853056 None:intergenic
TTAGCCTGTGAACTTGTTGT+TGG 0.415702 7_1:-4853317 None:intergenic
ATTGTTATTATTGTTCCAAA+TGG 0.426970 7_1:-4852913 None:intergenic
AGAGACAATGGTTTAGGTGC+AGG 0.428854 7_1:+4853191 Msa1006170:CDS
TGAAGGGATCATACTTCAAA+AGG 0.439449 7_1:+4853288 Msa1006170:CDS
CAAGTTATCAAACCCCTTCA+AGG 0.448201 7_1:+4853042 Msa1006170:CDS
TAGAGTCTAATCCAAGACTT+AGG 0.454455 7_1:-4850802 None:intergenic
TGTTTCCTTACTGGGCATGC+TGG 0.454733 7_1:-4851559 None:intergenic
GTTAGGTCAAGAGTGATTGT+TGG 0.454975 7_1:-4852780 None:intergenic
AAATTGTTTGAAACCATTTG+AGG 0.460922 7_1:-4853239 None:intergenic
TATATACCTGTTTCCTTACT+GGG 0.461590 7_1:-4851567 None:intergenic
CAGCCAAAGCTTGCCTTGAA+GGG 0.463069 7_1:-4853055 None:intergenic
ATGGAAGTTAACCTAAGTCT+TGG 0.464788 7_1:+4850791 Msa1006170:CDS
GGAAACAAGTTATTATGGTT+TGG 0.467619 7_1:-4852759 None:intergenic
CGATAGTATGCTCTTGGACA+TGG 0.469854 7_1:-4851523 None:intergenic
TTGATATTGTTAACAATGGA+TGG 0.469868 7_1:-4853404 None:intergenic
ACTTGGTGAGTATCCTCAAA+TGG 0.474336 7_1:+4853226 Msa1006170:CDS
ATAAGGATGAAGGAGAAGTT+AGG 0.476278 7_1:-4852797 None:intergenic
TATGGACAAAAGATAGCAAA+AGG 0.482613 7_1:+4851496 Msa1006170:CDS
GTGCAACGATAGTATGCTCT+TGG 0.484000 7_1:-4851529 None:intergenic
AACAAGTTATTATGGTTTGG+TGG 0.484846 7_1:-4852756 None:intergenic
AGCATGCCCAGTAAGGAAAC+AGG 0.485141 7_1:+4851561 Msa1006170:CDS
AGCTATGTTTGATGATGATA+AGG 0.489640 7_1:-4852814 None:intergenic
GAAACAGAAAATGGCAATGA+AGG 0.491332 7_1:-4853359 None:intergenic
AAATGGTAAAGGATGCTTGA+AGG 0.499468 7_1:+4853271 Msa1006170:CDS
CAAACTAAAATGTGCTAATG+AGG 0.505687 7_1:+4850499 Msa1006170:CDS
ATCTTAATCACAACATATGA+AGG 0.508764 7_1:+4852498 Msa1006170:CDS
TTGTTGAATCAAAATGGTAA+AGG 0.509980 7_1:+4853260 Msa1006170:CDS
AATGGTAAAGGATGCTTGAA+GGG 0.515986 7_1:+4853272 Msa1006170:CDS
TTCAGCTGCAGCTTCAATGA+TGG 0.518537 7_1:+4852572 Msa1006170:CDS
ACTCATTTGGACTTCTTCCA+AGG 0.530874 7_1:-4850712 None:intergenic
GAGTTTGTGTCACTTTGCCT+TGG 0.535145 7_1:+4850695 Msa1006170:CDS
AATTCACCAACACAAATCAA+TGG 0.535541 7_1:+4852672 Msa1006170:CDS
ATTGTTGATATTGTTAACAA+TGG 0.540285 7_1:-4853408 None:intergenic
GCAGGGTTGAATTTGAAACT+TGG 0.541526 7_1:+4853209 Msa1006170:CDS
AAAATGTGCTAATGAGGAGA+TGG 0.542633 7_1:+4850505 Msa1006170:CDS
GAGACAATGGTTTAGGTGCA+GGG 0.543859 7_1:+4853192 Msa1006170:CDS
TTTAGACCATTGATTTGTGT+TGG 0.547844 7_1:-4852678 None:intergenic
TTGCACCAGCATGCCCAGTA+AGG 0.547872 7_1:+4851554 Msa1006170:CDS
TCTTTCAAACAGATGAATGA+TGG 0.549199 7_1:+4851457 Msa1006170:intron
TCTTCAATCTCTGAACTGCT+AGG 0.554571 7_1:-4849509 None:intergenic
GTCACCAACAACAAGTTCAC+AGG 0.558090 7_1:+4853313 Msa1006170:CDS
AAGGCAAAGTGACACAAACT+CGG 0.562482 7_1:-4850693 None:intergenic
TGTGAAATTTGGTTGTTGTG+TGG 0.564092 7_1:-4852880 None:intergenic
TTTGATGATGATAAGGATGA+AGG 0.564477 7_1:-4852807 None:intergenic
AGCCAAAGCTTGCCTTGAAG+GGG 0.565025 7_1:-4853054 None:intergenic
AGATGAATGATGGATGTCAA+TGG 0.566197 7_1:+4851467 Msa1006170:intron
GCTATAACTGAATGAAGACT+TGG 0.566497 7_1:-4853107 None:intergenic
TGATTGCTCTACTGAACAAG+AGG 0.569404 7_1:+4849568 Msa1006170:CDS
CTCTAAATATATGGTGCCAA+CGG 0.572221 7_1:+4850820 Msa1006170:CDS
TGTCAAAGAAACGAAGCTGA+AGG 0.576917 7_1:-4850595 None:intergenic
GCTGATGCTGTTACTTGAAG+AGG 0.585701 7_1:-4852534 None:intergenic
CAAGAAGAAAATAGAGACAA+TGG 0.587262 7_1:+4853179 Msa1006170:CDS
TGGTGAATTTCCAAAAGATG+TGG 0.596714 7_1:-4852658 None:intergenic
ATATTGTTAACAATGGATGG+AGG 0.596810 7_1:-4853401 None:intergenic
GTCAAAGAAACGAAGCTGAA+GGG 0.605201 7_1:-4850594 None:intergenic
AGCTGAAGTTGTGTATGCCA+TGG 0.611049 7_1:-4852556 None:intergenic
TACTGAACAAGAGGTTACAA+AGG 0.612360 7_1:+4849577 Msa1006170:CDS
GGACAAGGATCAAACAATGG+TGG 0.624982 7_1:+4853152 Msa1006170:CDS
CTGATGCTGTTACTTGAAGA+GGG 0.633343 7_1:-4852533 None:intergenic
TCAAGTAACAGCATCAGCCA+TGG 0.634105 7_1:+4852539 Msa1006170:CDS
AAATCAGATACTAACTCCGT+TGG 0.635042 7_1:-4850836 None:intergenic
AAATGTGCTAATGAGGAGAT+GGG 0.639036 7_1:+4850506 Msa1006170:CDS
AGCTAAATGTGATACTCCCA+CGG 0.647058 7_1:+4851012 Msa1006170:CDS
AGGCAAAGTGACACAAACTC+GGG 0.648244 7_1:-4850692 None:intergenic
GTTTCGTCGATTGTAGGACA+AGG 0.650226 7_1:+4853137 Msa1006170:CDS
TAGCTCAGAAGAATTACCAA+AGG 0.660407 7_1:+4850871 Msa1006170:CDS
GTAGGACAAGGATCAAACAA+TGG 0.686881 7_1:+4853149 Msa1006170:CDS
TGAATGATGGATGTCAATGG+AGG 0.707535 7_1:+4851470 Msa1006170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCATAACTATTTATAAA+AGG + chr7_1:4849969-4849988 Msa1006170:intron 10.0%
!! ATTCATAACTATTTATAAAA+GGG + chr7_1:4849970-4849989 Msa1006170:intron 10.0%
!! ATTATTATATATATAACATG+TGG - chr7_1:4850319-4850338 None:intergenic 10.0%
!! AGAAATACTTAAATTTAATT+TGG + chr7_1:4851113-4851132 Msa1006170:intron 10.0%
!!! TATTTTTTTTTTATGCTTAT+AGG - chr7_1:4852363-4852382 None:intergenic 10.0%
!! TCTATACAATAATATAAATA+AGG - chr7_1:4852390-4852409 None:intergenic 10.0%
!! AACAATAATAACAATAAATT+AGG + chr7_1:4852921-4852940 Msa1006170:CDS 10.0%
!! ACAATAATAACAATAAATTA+GGG + chr7_1:4852922-4852941 Msa1006170:CDS 10.0%
!!! AGTCATAAAAAGTTTTAATA+AGG - chr7_1:4850178-4850197 None:intergenic 15.0%
!!! AATTTTATTTCTTCTTCATA+TGG + chr7_1:4850235-4850254 Msa1006170:intron 15.0%
!!! TTATCCTTATTAATCTTTTT+AGG + chr7_1:4850350-4850369 Msa1006170:intron 15.0%
!!! AATTTTGTCAATTTGTTTAT+AGG - chr7_1:4851632-4851651 None:intergenic 15.0%
!! AAACAAATTGACAAAATTTA+TGG + chr7_1:4851634-4851653 Msa1006170:intron 15.0%
!! TATAGCATTTCATTAATAAT+AGG + chr7_1:4852151-4852170 Msa1006170:intron 15.0%
!!! ATTTTTTGCTTTCAAAATAT+CGG - chr7_1:4852337-4852356 None:intergenic 15.0%
!!! TTGATGATTTGTTATGTATA+AGG + chr7_1:4849698-4849717 Msa1006170:intron 20.0%
!! CAATATGACTGATTATTTAT+AGG + chr7_1:4849893-4849912 Msa1006170:intron 20.0%
!! ATGTCCTAAAAAGATTAATA+AGG - chr7_1:4850357-4850376 None:intergenic 20.0%
!! ACAAAAAAGAAGAAGAAAAT+CGG - chr7_1:4851282-4851301 None:intergenic 20.0%
!!! ACTAATAAGAGATTTTTTTG+TGG - chr7_1:4851825-4851844 None:intergenic 20.0%
!!! TATCTTATGTTTTAAGAACT+AGG + chr7_1:4851869-4851888 Msa1006170:intron 20.0%
!!! CTGAAATCATATAAATTTTG+GGG - chr7_1:4852451-4852470 None:intergenic 20.0%
!!! CCTGAAATCATATAAATTTT+GGG - chr7_1:4852452-4852471 None:intergenic 20.0%
!!! ACCTGAAATCATATAAATTT+TGG - chr7_1:4852453-4852472 None:intergenic 20.0%
!! GAACAAAAACTAAGATTATT+TGG - chr7_1:4852861-4852880 None:intergenic 20.0%
!!! ATTGTTATTATTGTTCCAAA+TGG - chr7_1:4852916-4852935 None:intergenic 20.0%
!!! CTTGAGTTTTTTCAATATTA+GGG - chr7_1:4852968-4852987 None:intergenic 20.0%
!!! ACTTGAGTTTTTTCAATATT+AGG - chr7_1:4852969-4852988 None:intergenic 20.0%
!! ATATTGAAAAAACTCAAGTT+AGG + chr7_1:4852970-4852989 Msa1006170:CDS 20.0%
!!! TTTTCTTGGAAATGATTAAA+AGG - chr7_1:4852996-4853015 None:intergenic 20.0%
!!! GATTTTGATAGAAATTTTCT+TGG - chr7_1:4853010-4853029 None:intergenic 20.0%
!!! AACAATTTGTTGAATCAAAA+TGG + chr7_1:4853254-4853273 Msa1006170:CDS 20.0%
!! ATTGTTGATATTGTTAACAA+TGG - chr7_1:4853411-4853430 None:intergenic 20.0%
! AGAAAAAATTAGTGAGGATT+AGG - chr7_1:4849614-4849633 None:intergenic 25.0%
!!! AAGTTTTGTTGTTGTTTTAG+AGG - chr7_1:4849812-4849831 None:intergenic 25.0%
!!! TAGAGAGATTTTTTGTGTTT+AGG + chr7_1:4849868-4849887 Msa1006170:intron 25.0%
!!! GTTTTGTTCATATAGTATTG+TGG + chr7_1:4850039-4850058 Msa1006170:intron 25.0%
!!! TGTCCTTGATAATCTTTTTA+TGG + chr7_1:4850070-4850089 Msa1006170:intron 25.0%
!! TGGATTAGACTCTAAATATA+TGG + chr7_1:4850811-4850830 Msa1006170:CDS 25.0%
! GGTCTCTATATCATAAAAAT+TGG + chr7_1:4851134-4851153 Msa1006170:intron 25.0%
! GATAATGCATAATATATGCA+AGG + chr7_1:4851778-4851797 Msa1006170:intron 25.0%
! TTATTAAACCTATAATCCAG+AGG - chr7_1:4851915-4851934 None:intergenic 25.0%
! AAAAGAAGTTGAATCAATTG+TGG + chr7_1:4851987-4852006 Msa1006170:intron 25.0%
! ATAGGTTTAATTGGTTGAAT+CGG - chr7_1:4852078-4852097 None:intergenic 25.0%
! ATTCAACCAATTAAACCTAT+TGG + chr7_1:4852078-4852097 Msa1006170:intron 25.0%
! TTTGAACCAATAGGTTTAAT+TGG - chr7_1:4852087-4852106 None:intergenic 25.0%
! AATGAGGTATAACAAGTAAT+GGG + chr7_1:4852185-4852204 Msa1006170:intron 25.0%
! CCCAAAATTTATATGATTTC+AGG + chr7_1:4852449-4852468 Msa1006170:intron 25.0%
! ATCTTAATCACAACATATGA+AGG + chr7_1:4852498-4852517 Msa1006170:CDS 25.0%
! TTGTTGGAAACAAGTTATTA+TGG - chr7_1:4852767-4852786 None:intergenic 25.0%
! AGATTATTTGGAGAAAATCT+TGG - chr7_1:4852849-4852868 None:intergenic 25.0%
!! AAATTGTTTGAAACCATTTG+AGG - chr7_1:4853242-4853261 None:intergenic 25.0%
! TTGTTGAATCAAAATGGTAA+AGG + chr7_1:4853260-4853279 Msa1006170:CDS 25.0%
! TTGATATTGTTAACAATGGA+TGG - chr7_1:4853407-4853426 None:intergenic 25.0%
!!! CAATATCAACAATTTTGATC+TGG + chr7_1:4853418-4853437 Msa1006170:CDS 25.0%
AAATTAGTGAGGATTAGGAT+TGG - chr7_1:4849609-4849628 None:intergenic 30.0%
TGCACAAGAAAAAATTAGTG+AGG - chr7_1:4849620-4849639 None:intergenic 30.0%
ACGCCATAAAAAGATTATCA+AGG - chr7_1:4850076-4850095 None:intergenic 30.0%
TCTTCTTCATATGGTATAGT+TGG + chr7_1:4850244-4850263 Msa1006170:intron 30.0%
!! TCATAGCCTAGTATTTTTGT+CGG + chr7_1:4850405-4850424 Msa1006170:intron 30.0%
ATCATACCGACAAAAATACT+AGG - chr7_1:4850414-4850433 None:intergenic 30.0%
! CTCCTATGATTTTGAATTCT+AGG + chr7_1:4850472-4850491 Msa1006170:intron 30.0%
CTCCTAGAATTCAAAATCAT+AGG - chr7_1:4850477-4850496 None:intergenic 30.0%
! CTATGATTTTGAATTCTAGG+AGG + chr7_1:4850475-4850494 Msa1006170:intron 30.0%
CAAACTAAAATGTGCTAATG+AGG + chr7_1:4850499-4850518 Msa1006170:CDS 30.0%
GCTTCTTTCTTATACTCATT+TGG - chr7_1:4850728-4850747 None:intergenic 30.0%
!! CTTTCTCTTTAGGTTTGTTA+GGG - chr7_1:4850766-4850785 None:intergenic 30.0%
! TCTTTCTCTTTAGGTTTGTT+AGG - chr7_1:4850767-4850786 None:intergenic 30.0%
ACCTAAAGAGAAAGAAGATA+TGG + chr7_1:4850772-4850791 Msa1006170:CDS 30.0%
TCCATATCTTCTTTCTCTTT+AGG - chr7_1:4850776-4850795 None:intergenic 30.0%
AATTCTTCTGAGCTATTCAT+TGG - chr7_1:4850866-4850885 None:intergenic 30.0%
GAAGTTGAAGTTGAAGAAAA+AGG + chr7_1:4850893-4850912 Msa1006170:CDS 30.0%
! AATTAGTTGATACTAACCGT+GGG - chr7_1:4851031-4851050 None:intergenic 30.0%
! TAATTAGTTGATACTAACCG+TGG - chr7_1:4851032-4851051 None:intergenic 30.0%
TCTTTCAAACAGATGAATGA+TGG + chr7_1:4851457-4851476 Msa1006170:intron 30.0%
TATGGACAAAAGATAGCAAA+AGG + chr7_1:4851496-4851515 Msa1006170:CDS 30.0%
TATATACCTGTTTCCTTACT+GGG - chr7_1:4851570-4851589 None:intergenic 30.0%
ATGCATAATATATGCAAGGT+TGG + chr7_1:4851782-4851801 Msa1006170:intron 30.0%
TGCATAATATATGCAAGGTT+GGG + chr7_1:4851783-4851802 Msa1006170:intron 30.0%
! TAAGTTGAACTACGTTGAAT+CGG + chr7_1:4851932-4851951 Msa1006170:intron 30.0%
!! ATCCAATTTTAAGTAACCGA+AGG + chr7_1:4852014-4852033 Msa1006170:intron 30.0%
AACCTTCGGTTACTTAAAAT+TGG - chr7_1:4852019-4852038 None:intergenic 30.0%
TAGGTTTAATTGGTTGAATC+GGG - chr7_1:4852077-4852096 None:intergenic 30.0%
ATAGGTTGTTCAATACAATG+AGG + chr7_1:4852169-4852188 Msa1006170:intron 30.0%
CAATGAGGTATAACAAGTAA+TGG + chr7_1:4852184-4852203 Msa1006170:intron 30.0%
AATTCACCAACACAAATCAA+TGG + chr7_1:4852672-4852691 Msa1006170:CDS 30.0%
!! TTTAGACCATTGATTTGTGT+TGG - chr7_1:4852681-4852700 None:intergenic 30.0%
GTGTTCTTGATTGTTCAAAT+TGG - chr7_1:4852716-4852735 None:intergenic 30.0%
!! GGAATGAAGAAATGTTGTTT+TGG - chr7_1:4852738-4852757 None:intergenic 30.0%
! AACAAGTTATTATGGTTTGG+TGG - chr7_1:4852759-4852778 None:intergenic 30.0%
GGAAACAAGTTATTATGGTT+TGG - chr7_1:4852762-4852781 None:intergenic 30.0%
!! TTTGATGATGATAAGGATGA+AGG - chr7_1:4852810-4852829 None:intergenic 30.0%
!! AGCTATGTTTGATGATGATA+AGG - chr7_1:4852817-4852836 None:intergenic 30.0%
GATGATATTGGTGTGAAATT+TGG - chr7_1:4852894-4852913 None:intergenic 30.0%
TTGTTCCAAATGGATGATAT+TGG - chr7_1:4852906-4852925 None:intergenic 30.0%
CAAGAAGAAAATAGAGACAA+TGG + chr7_1:4853179-4853198 Msa1006170:CDS 30.0%
GAAAATAGAGACAATGGTTT+AGG + chr7_1:4853185-4853204 Msa1006170:CDS 30.0%
ATATTGTTAACAATGGATGG+AGG - chr7_1:4853404-4853423 None:intergenic 30.0%
AGCAATCAACTTCAACTTCA+TGG - chr7_1:4849556-4849575 None:intergenic 35.0%
TACTGAACAAGAGGTTACAA+AGG + chr7_1:4849577-4849596 Msa1006170:CDS 35.0%
AAAATGTGCTAATGAGGAGA+TGG + chr7_1:4850505-4850524 Msa1006170:CDS 35.0%
AAATGTGCTAATGAGGAGAT+GGG + chr7_1:4850506-4850525 Msa1006170:CDS 35.0%
ATGGAAGTTAACCTAAGTCT+TGG + chr7_1:4850791-4850810 Msa1006170:CDS 35.0%
TAGAGTCTAATCCAAGACTT+AGG - chr7_1:4850805-4850824 None:intergenic 35.0%
! CTCTAAATATATGGTGCCAA+CGG + chr7_1:4850820-4850839 Msa1006170:CDS 35.0%
AAATCAGATACTAACTCCGT+TGG - chr7_1:4850839-4850858 None:intergenic 35.0%
TAGCTCAGAAGAATTACCAA+AGG + chr7_1:4850871-4850890 Msa1006170:CDS 35.0%
TCTTCAACTTCAACTTCCTT+TGG - chr7_1:4850890-4850909 None:intergenic 35.0%
!! TCGTCACTAATTTTGATGCT+AGG + chr7_1:4851232-4851251 Msa1006170:intron 35.0%
!! CTAATTTTGATGCTAGGTGT+CGG + chr7_1:4851238-4851257 Msa1006170:intron 35.0%
!! AGATGAATGATGGATGTCAA+TGG + chr7_1:4851467-4851486 Msa1006170:intron 35.0%
GTATATACCTGTTTCCTTAC+TGG - chr7_1:4851571-4851590 None:intergenic 35.0%
GCATAATATATGCAAGGTTG+GGG + chr7_1:4851784-4851803 Msa1006170:intron 35.0%
!!! AGAGATTTTTTTGTGGTGTC+CGG - chr7_1:4851818-4851837 None:intergenic 35.0%
GTTAAACTGTGATCAACCTT+CGG - chr7_1:4852033-4852052 None:intergenic 35.0%
GGTTTCAGATTTGAACCAAT+AGG - chr7_1:4852096-4852115 None:intergenic 35.0%
CAATGAACGACAAACAAATG+AGG - chr7_1:4852252-4852271 None:intergenic 35.0%
TGATCTTAGAGTTTGTGAAG+TGG + chr7_1:4852276-4852295 Msa1006170:intron 35.0%
GATCTTAGAGTTTGTGAAGT+GGG + chr7_1:4852277-4852296 Msa1006170:intron 35.0%
! CACAACAATTCCACATCTTT+TGG + chr7_1:4852648-4852667 Msa1006170:CDS 35.0%
TGGTGAATTTCCAAAAGATG+TGG - chr7_1:4852661-4852680 None:intergenic 35.0%
ATAAGGATGAAGGAGAAGTT+AGG - chr7_1:4852800-4852819 None:intergenic 35.0%
TGTGAAATTTGGTTGTTGTG+TGG - chr7_1:4852883-4852902 None:intergenic 35.0%
TCACACCAATATCATCCATT+TGG + chr7_1:4852898-4852917 Msa1006170:CDS 35.0%
GCTATAACTGAATGAAGACT+TGG - chr7_1:4853110-4853129 None:intergenic 35.0%
AAATGGTAAAGGATGCTTGA+AGG + chr7_1:4853271-4853290 Msa1006170:CDS 35.0%
AATGGTAAAGGATGCTTGAA+GGG + chr7_1:4853272-4853291 Msa1006170:CDS 35.0%
TGAAGGGATCATACTTCAAA+AGG + chr7_1:4853288-4853307 Msa1006170:CDS 35.0%
GAAACAGAAAATGGCAATGA+AGG - chr7_1:4853362-4853381 None:intergenic 35.0%
CTGCTCTTAGAAACAGAAAA+TGG - chr7_1:4853371-4853390 None:intergenic 35.0%
TCTTCAATCTCTGAACTGCT+AGG - chr7_1:4849512-4849531 None:intergenic 40.0%
TGATTGCTCTACTGAACAAG+AGG + chr7_1:4849568-4849587 Msa1006170:CDS 40.0%
GTCAAAGAAACGAAGCTGAA+GGG - chr7_1:4850597-4850616 None:intergenic 40.0%
TGTCAAAGAAACGAAGCTGA+AGG - chr7_1:4850598-4850617 None:intergenic 40.0%
AAGGCAAAGTGACACAAACT+CGG - chr7_1:4850696-4850715 None:intergenic 40.0%
ACTCATTTGGACTTCTTCCA+AGG - chr7_1:4850715-4850734 None:intergenic 40.0%
! GAAACTCTGACTCTTTTAGC+AGG - chr7_1:4850986-4851005 None:intergenic 40.0%
AGCTAAATGTGATACTCCCA+CGG + chr7_1:4851012-4851031 Msa1006170:CDS 40.0%
!! TGAATGATGGATGTCAATGG+AGG + chr7_1:4851470-4851489 Msa1006170:CDS 40.0%
GGATGTCAATGGAGGAAATA+TGG + chr7_1:4851478-4851497 Msa1006170:CDS 40.0%
!!! GAGATTTTTTTGTGGTGTCC+GGG - chr7_1:4851817-4851836 None:intergenic 40.0%
TGATGAGACCTCTGGATTAT+AGG + chr7_1:4851904-4851923 Msa1006170:intron 40.0%
TAACCAACCAACAAGCTTGT+CGG + chr7_1:4852049-4852068 Msa1006170:intron 40.0%
GGTAAACAATCTTCTCCAAG+CGG + chr7_1:4852301-4852320 Msa1006170:intron 40.0%
ACATGTCATCAGCACATCTT+TGG - chr7_1:4852476-4852495 None:intergenic 40.0%
! CTGATGCTGTTACTTGAAGA+GGG - chr7_1:4852536-4852555 None:intergenic 40.0%
GTTAGGTCAAGAGTGATTGT+TGG - chr7_1:4852783-4852802 None:intergenic 40.0%
CAAGTTATCAAACCCCTTCA+AGG + chr7_1:4853042-4853061 Msa1006170:CDS 40.0%
GTAGGACAAGGATCAAACAA+TGG + chr7_1:4853149-4853168 Msa1006170:CDS 40.0%
! GCAGGGTTGAATTTGAAACT+TGG + chr7_1:4853209-4853228 Msa1006170:CDS 40.0%
! ACTTGGTGAGTATCCTCAAA+TGG + chr7_1:4853226-4853245 Msa1006170:CDS 40.0%
!! TTAGCCTGTGAACTTGTTGT+TGG - chr7_1:4853320-4853339 None:intergenic 40.0%
AGGCAAAGTGACACAAACTC+GGG - chr7_1:4850695-4850714 None:intergenic 45.0%
!! GAGTTTGTGTCACTTTGCCT+TGG + chr7_1:4850695-4850714 Msa1006170:CDS 45.0%
CGATAGTATGCTCTTGGACA+TGG - chr7_1:4851526-4851545 None:intergenic 45.0%
GTGCAACGATAGTATGCTCT+TGG - chr7_1:4851532-4851551 None:intergenic 45.0%
AGAACGAATGATGAGACCTC+TGG + chr7_1:4851896-4851915 Msa1006170:intron 45.0%
CTTAGAGTTTGTGAAGTGGG+TGG + chr7_1:4852280-4852299 Msa1006170:intron 45.0%
! GCTGATGCTGTTACTTGAAG+AGG - chr7_1:4852537-4852556 None:intergenic 45.0%
TCAAGTAACAGCATCAGCCA+TGG + chr7_1:4852539-4852558 Msa1006170:CDS 45.0%
AGCTGAAGTTGTGTATGCCA+TGG - chr7_1:4852559-4852578 None:intergenic 45.0%
TTCAGCTGCAGCTTCAATGA+TGG + chr7_1:4852572-4852591 Msa1006170:CDS 45.0%
GCAGCTTCAATGATGGTATC+AGG + chr7_1:4852579-4852598 Msa1006170:CDS 45.0%
! GTTTCGTCGATTGTAGGACA+AGG + chr7_1:4853137-4853156 Msa1006170:CDS 45.0%
GGACAAGGATCAAACAATGG+TGG + chr7_1:4853152-4853171 Msa1006170:CDS 45.0%
AGAGACAATGGTTTAGGTGC+AGG + chr7_1:4853191-4853210 Msa1006170:CDS 45.0%
GAGACAATGGTTTAGGTGCA+GGG + chr7_1:4853192-4853211 Msa1006170:CDS 45.0%
GTCACCAACAACAAGTTCAC+AGG + chr7_1:4853313-4853332 Msa1006170:CDS 45.0%
!! ATAAAAAATTTAAATAATGA+TGG - chr7_1:4851314-4851333 None:intergenic 5.0%
!! AAAAAAAAAAAATATATCAA+TGG - chr7_1:4852117-4852136 None:intergenic 5.0%
TGTTTCCTTACTGGGCATGC+TGG - chr7_1:4851562-4851581 None:intergenic 50.0%
AGCATGCCCAGTAAGGAAAC+AGG + chr7_1:4851561-4851580 Msa1006170:CDS 50.0%
ACCAGTGAGCTTAGCTCAGT+TGG + chr7_1:4851751-4851770 Msa1006170:intron 50.0%
ACCAACTGAGCTAAGCTCAC+TGG - chr7_1:4851755-4851774 None:intergenic 50.0%
!! GAACCGACAAGCTTGTTGGT+TGG - chr7_1:4852055-4852074 None:intergenic 50.0%
ATAACGTGACAACCTCCGCT+AGG + chr7_1:4852216-4852235 Msa1006170:intron 50.0%
ATCGGTGTGTTCTATCCGCT+TGG - chr7_1:4852319-4852338 None:intergenic 50.0%
AACCCCTTCAAGGCAAGCTT+TGG + chr7_1:4853052-4853071 Msa1006170:CDS 50.0%
AGCCAAAGCTTGCCTTGAAG+GGG - chr7_1:4853057-4853076 None:intergenic 50.0%
CAGCCAAAGCTTGCCTTGAA+GGG - chr7_1:4853058-4853077 None:intergenic 50.0%
TCAGCCAAAGCTTGCCTTGA+AGG - chr7_1:4853059-4853078 None:intergenic 50.0%
! GCTGCAGTTTCGTCGATTGT+AGG + chr7_1:4853131-4853150 Msa1006170:CDS 50.0%
TTGCACCAGCATGCCCAGTA+AGG + chr7_1:4851554-4851573 Msa1006170:CDS 55.0%
CAAGGTTGGGGTTCGAATCC+CGG + chr7_1:4851796-4851815 Msa1006170:intron 55.0%
TCGGGAACCGACAAGCTTGT+TGG - chr7_1:4852059-4852078 None:intergenic 55.0%
TGAGGTAGCTCGCAACCTAG+CGG - chr7_1:4852234-4852253 None:intergenic 55.0%
GGTAGCTCGCAACCTAGCGG+AGG - chr7_1:4852231-4852250 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 4849500 4853460 4849500 ID=Msa1006170;Name=Msa1006170
chr7_1 mRNA 4849500 4853460 4849500 ID=Msa1006170-mRNA-1;Parent=Msa1006170;Name=Msa1006170-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|0.75|1|1|4|0|580
chr7_1 exon 4849500 4849598 4849500 ID=Msa1006170-mRNA-1:exon:1607;Parent=Msa1006170-mRNA-1
chr7_1 exon 4850494 4851033 4850494 ID=Msa1006170-mRNA-1:exon:1608;Parent=Msa1006170-mRNA-1
chr7_1 exon 4851469 4851582 4851469 ID=Msa1006170-mRNA-1:exon:1609;Parent=Msa1006170-mRNA-1
chr7_1 exon 4852471 4853460 4852471 ID=Msa1006170-mRNA-1:exon:1610;Parent=Msa1006170-mRNA-1
chr7_1 CDS 4849500 4849598 4849500 ID=Msa1006170-mRNA-1:cds;Parent=Msa1006170-mRNA-1
chr7_1 CDS 4850494 4851033 4850494 ID=Msa1006170-mRNA-1:cds;Parent=Msa1006170-mRNA-1
chr7_1 CDS 4851469 4851582 4851469 ID=Msa1006170-mRNA-1:cds;Parent=Msa1006170-mRNA-1
chr7_1 CDS 4852471 4853460 4852471 ID=Msa1006170-mRNA-1:cds;Parent=Msa1006170-mRNA-1
Gene Sequence

>Msa1006170

ATGTCGAGTCCTAGCAGTTCAGAGATTGAAGAGAAAAGAGTTACTTCAATTATCCATGAAGTTGAAGTTGATTGCTCTACTGAACAAGAGGTTACAAAGGAGGACAAACTAAAATGTGCTAATGAGGAGATGGGTGACGTAAAAGAAGAAAACGAAAGATTGAAGACGATGCTGTCACGAGTTGAAAAAGACTACAATTCCCTTCAGCTTCGTTTCTTTGACATCGTTAACAAAGACGTTTCTATGAAAGATATAGAAGATTCGTCAACTAATTCACACGAAGAAATCGATGAAGAACCCGAGTTTGTGTCACTTTGCCTTGGAAGAAGTCCAAATGAGTATAAGAAAGAAGCAAAAAACATTGAAAACCCTAACAAACCTAAAGAGAAAGAAGATATGGAAGTTAACCTAAGTCTTGGATTAGACTCTAAATATATGGTGCCAACGGAGTTAGTATCTGATTTGAGTCCAATGAATAGCTCAGAAGAATTACCAAAGGAAGTTGAAGTTGAAGAAAAAGGAGCAATATTTTCAACAAATAAATCAACAAAAGTGATAAATGTAAATGATGAGATTTCAGAACTATTGCCTGCTAAAAGAGTCAGAGTTTCTGTGAGAGCTAAATGTGATACTCCCACGATGAATGATGGATGTCAATGGAGGAAATATGGACAAAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACAGTTGCACCAGCATGCCCAGTAAGGAAACAGGTCCAAAGATGTGCTGATGACATGTCAATCTTAATCACAACATATGAAGGAACACACAATCACCCTCTTCAAGTAACAGCATCAGCCATGGCATACACAACTTCAGCTGCAGCTTCAATGATGGTATCAGGTTCATCAACATCATCATCATCATCACATCAAAATCAAAATGTTCATCACAACAATTCCACATCTTTTGGAAATTCACCAACACAAATCAATGGTCTAAATTTCAATCATCACCAATTTGAACAATCAAGAACACCAAAACAACATTTCTTCATTCCACCAAACCATAATAACTTGTTTCCAACAATCACTCTTGACCTAACTTCTCCTTCATCCTTATCATCATCAAACATAGCTTCAAATGTTCCAAGATTTTCTCCAAATAATCTTAGTTTTTGTTCCACACAACAACCAAATTTCACACCAATATCATCCATTTGGAACAATAATAACAATAAATTAGGGTTTATTAACAATAACTCAAACCCTAATATTGAAAAAACTCAAGTTAGGCCTTTTAATCATTTCCAAGAAAATTTCTATCAAAATCAAAATTGCATGACAAGTTATCAAACCCCTTCAAGGCAAGCTTTGGCTGAAACAATAAGCAAAGCGATAAGCACTGATCCAAGTCTTCATTCAGTTATAGCTGCTGCAGTTTCGTCGATTGTAGGACAAGGATCAAACAATGGTGGAAAGCAAGAAGAAAATAGAGACAATGGTTTAGGTGCAGGGTTGAATTTGAAACTTGGTGAGTATCCTCAAATGGTTTCAAACAATTTGTTGAATCAAAATGGTAAAGGATGCTTGAAGGGATCATACTTCAAAAGGTTGTCACCAACAACAAGTTCACAGGCTAAAAATTTCATGCTTCTTCAACCTTCATTGCCATTTTCTGTTTCTAAGAGCAGTGCTAGTAAACCTCCATCCATTGTTAACAATATCAACAATTTTGATCTGGATAAGAACAAACATAATTAG
Protein sequence

>Msa1006170

MSSPSSSEIEEKRVTSIIHEVEVDCSTEQEVTKEDKLKCANEEMGDVKEENERLKTMLSRVEKDYNSLQLRFFDIVNKDVSMKDIEDSSTNSHEEIDEEPEFVSLCLGRSPNEYKKEAKNIENPNKPKEKEDMEVNLSLGLDSKYMVPTELVSDLSPMNSSEELPKEVEVEEKGAIFSTNKSTKVINVNDEISELLPAKRVRVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDMSILITTYEGTHNHPLQVTASAMAYTTSAAASMMVSGSSTSSSSSHQNQNVHHNNSTSFGNSPTQINGLNFNHHQFEQSRTPKQHFFIPPNHNNLFPTITLDLTSPSSLSSSNIASNVPRFSPNNLSFCSTQQPNFTPISSIWNNNNNKLGFINNNSNPNIEKTQVRPFNHFQENFYQNQNCMTSYQTPSRQALAETISKAISTDPSLHSVIAAAVSSIVGQGSNNGGKQEENRDNGLGAGLNLKLGEYPQMVSNNLLNQNGKGCLKGSYFKRLSPTTSSQAKNFMLLQPSLPFSVSKSSASKPPSIVNNINNFDLDKNKHN*