Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1356240 | XP_003601487.3 | 85.217 | 115 | 16 | 1 | 1 | 114 | 1 | 115 | 1.38e-54 | 176 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1356240 | sp|Q5PNZ7|HIP46_ARATH | 49.398 | 83 | 39 | 1 | 3 | 82 | 2 | 84 | 1.08e-16 | 74.7 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1356240 | A0A396J1F2 | 85.217 | 115 | 16 | 1 | 1 | 114 | 1 | 115 | 6.58e-55 | 176 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0818010 | Msa1356240 | 0.806116 | 9.616020e-50 | -8.615850e-47 |
Msa0512420 | Msa1356240 | 0.814611 | 1.410966e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1356240 | MtrunA17_Chr3g0120531 | 85.217 | 115 | 16 | 1 | 1 | 114 | 1 | 115 | 1.27e-58 | 176 |
Msa1356240 | MtrunA17_Chr3g0120541 | 70.588 | 119 | 26 | 3 | 1 | 114 | 1 | 115 | 2.97e-49 | 152 |
Msa1356240 | MtrunA17_Chr3g0120551 | 58.824 | 119 | 42 | 3 | 1 | 114 | 1 | 117 | 2.75e-38 | 124 |
Msa1356240 | MtrunA17_Chr2g0290831 | 51.351 | 74 | 36 | 0 | 3 | 76 | 2 | 75 | 2.17e-20 | 78.2 |
Msa1356240 | MtrunA17_Chr5g0438551 | 43.609 | 133 | 51 | 5 | 4 | 113 | 2 | 133 | 2.65e-20 | 79.7 |
Msa1356240 | MtrunA17_Chr6g0483521 | 50.000 | 62 | 31 | 0 | 3 | 64 | 2 | 63 | 6.29e-16 | 70.5 |
Msa1356240 | MtrunA17_Chr6g0483511 | 51.613 | 62 | 30 | 0 | 3 | 64 | 2 | 63 | 5.63e-15 | 67.4 |
Msa1356240 | MtrunA17_Chr6g0483581 | 45.205 | 73 | 40 | 0 | 3 | 75 | 2 | 74 | 1.31e-14 | 67.0 |
Msa1356240 | MtrunA17_Chr6g0483561 | 44.286 | 70 | 39 | 0 | 3 | 72 | 2 | 71 | 6.34e-14 | 65.1 |
Msa1356240 | MtrunA17_Chr6g0469651 | 50.704 | 71 | 30 | 4 | 4 | 73 | 2 | 68 | 5.53e-12 | 58.2 |
Msa1356240 | MtrunA17_Chr6g0469571 | 44.928 | 69 | 35 | 2 | 5 | 73 | 3 | 68 | 4.11e-11 | 55.8 |
Msa1356240 | MtrunA17_Chr6g0469551 | 44.928 | 69 | 35 | 2 | 5 | 73 | 3 | 68 | 5.36e-11 | 55.5 |
Msa1356240 | MtrunA17_Chr6g0469541 | 36.036 | 111 | 58 | 7 | 4 | 107 | 2 | 106 | 5.38e-11 | 55.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1356240 | AT3G20180.3 | 43.617 | 94 | 52 | 1 | 3 | 96 | 2 | 94 | 4.49e-18 | 73.9 |
Msa1356240 | AT5G48290.1 | 49.398 | 83 | 39 | 1 | 3 | 82 | 2 | 84 | 1.10e-17 | 74.7 |
Msa1356240 | AT3G20180.2 | 47.059 | 85 | 43 | 1 | 3 | 85 | 21 | 105 | 1.53e-17 | 73.2 |
Msa1356240 | AT3G07600.1 | 44.872 | 78 | 43 | 0 | 3 | 80 | 2 | 79 | 3.63e-17 | 72.8 |
Msa1356240 | AT3G20180.4 | 42.391 | 92 | 52 | 1 | 5 | 96 | 2 | 92 | 8.37e-17 | 70.9 |
Msa1356240 | AT3G20180.1 | 42.697 | 89 | 50 | 1 | 8 | 96 | 3 | 90 | 1.81e-16 | 69.7 |
Msa1356240 | AT5G48290.3 | 40.777 | 103 | 38 | 2 | 3 | 82 | 2 | 104 | 6.50e-14 | 65.1 |
Msa1356240 | AT1G55775.1 | 34.821 | 112 | 69 | 2 | 2 | 113 | 3 | 110 | 1.60e-13 | 62.8 |
Msa1356240 | AT5G48290.2 | 47.297 | 74 | 36 | 1 | 12 | 82 | 1 | 74 | 4.18e-13 | 62.4 |
Msa1356240 | AT4G05030.2 | 45.333 | 75 | 40 | 1 | 1 | 75 | 1 | 74 | 2.00e-12 | 58.5 |
Msa1356240 | AT4G05030.1 | 43.056 | 72 | 41 | 0 | 4 | 75 | 36 | 107 | 1.19e-11 | 57.4 |
Find 29 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGATTGCAGTTGGAGTTTC+AGG | 0.157536 | tig0015546:-7287 | Msa1356240:intron |
TTTATATCTCATAAGTATTA+TGG | 0.216328 | tig0015546:-7762 | Msa1356240:exon |
ACACAAGGCCATGCCATAAT+TGG | 0.269055 | tig0015546:+6997 | None:intergenic |
ACTTATGAGATATAAATAAA+TGG | 0.288883 | tig0015546:+7769 | None:intergenic |
ATTAGAAGAAGCTTTGTTTC+CGG | 0.305912 | tig0015546:+7792 | None:intergenic |
AACTGCAATCTTCATGGCTT+TGG | 0.309449 | tig0015546:+7298 | None:intergenic |
AAAGAAAGAAGAACCAATTA+TGG | 0.328215 | tig0015546:-7010 | Msa1356240:CDS |
ATGGCATGGCCTTGTGTAAC+TGG | 0.358016 | tig0015546:-6991 | Msa1356240:CDS |
AACTCCAACTGCAATCTTCA+TGG | 0.358381 | tig0015546:+7292 | None:intergenic |
GAAATTCTGTCATGCAGAAT+TGG | 0.360093 | tig0015546:-7064 | Msa1356240:CDS |
ACTTTAATAATACACCATTC+CGG | 0.451555 | tig0015546:-7811 | None:intergenic |
CTTATCTCACACACAGGGAC+AGG | 0.478978 | tig0015546:+6955 | None:intergenic |
AAGGATCAACTAGAAGTAAT+CGG | 0.481199 | tig0015546:-7129 | Msa1356240:CDS |
CTGTCCCTGTGTGTGAGATA+AGG | 0.485521 | tig0015546:-6954 | Msa1356240:CDS |
TATTGATGACATTCACATGA+TGG | 0.492268 | tig0015546:+6915 | None:intergenic |
TGTCCCTGTGTGTGAGATAA+GGG | 0.495058 | tig0015546:-6953 | Msa1356240:CDS |
TCTCATAAGTATTATGGCTA+AGG | 0.519265 | tig0015546:-7756 | Msa1356240:intron |
GTGGAAAGTGCAGCAATACA+AGG | 0.533044 | tig0015546:-7159 | Msa1356240:CDS |
GCAGCAAAAGATAGTGATCA+AGG | 0.536634 | tig0015546:-7348 | Msa1356240:intron |
AAGAAGCTTTGTTTCCGGAA+TGG | 0.538643 | tig0015546:+7797 | None:intergenic |
CACACAGGGACAGGGTAATG+AGG | 0.564551 | tig0015546:+6964 | None:intergenic |
AAAGCCATGAAGATTGCAGT+TGG | 0.583776 | tig0015546:-7296 | Msa1356240:CDS |
CATGCAGAATTGGTGAGTGT+TGG | 0.620675 | tig0015546:-7054 | Msa1356240:CDS |
AGCAATACAAGGAGATAGCA+AGG | 0.620845 | tig0015546:-7148 | Msa1356240:CDS |
AAGAAGAACCAATTATGGCA+TGG | 0.625011 | tig0015546:-7005 | Msa1356240:CDS |
TCGTCCCTTATCTCACACAC+AGG | 0.651929 | tig0015546:+6949 | None:intergenic |
TTATCTCACACACAGGGACA+GGG | 0.661020 | tig0015546:+6956 | None:intergenic |
CGTCCCTTATCTCACACACA+GGG | 0.689018 | tig0015546:+6950 | None:intergenic |
TGAGGATAACCAGTTACACA+AGG | 0.713738 | tig0015546:+6982 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAGTATATATATTGAATAA+AGG | + | tig0015546:7051-7070 | None:intergenic | 10.0% |
!! | TTTGAATTAAAAATGATTAA+TGG | + | tig0015546:7496-7515 | None:intergenic | 10.0% |
!! | ATAGTATATATATTGAATAA+AGG | + | tig0015546:7051-7070 | None:intergenic | 10.0% |
!! | TTTGAATTAAAAATGATTAA+TGG | + | tig0015546:7496-7515 | None:intergenic | 10.0% |
!! | ACTTATGAGATATAAATAAA+TGG | + | tig0015546:6967-6986 | None:intergenic | 15.0% |
!! | TTTATATCTCATAAGTATTA+TGG | - | tig0015546:6971-6990 | Msa1356240:CDS | 15.0% |
!!! | TAATCCTTTTTTGAAATTTT+TGG | + | tig0015546:7258-7277 | None:intergenic | 15.0% |
!! | ACTTATGAGATATAAATAAA+TGG | + | tig0015546:6967-6986 | None:intergenic | 15.0% |
!! | TTTATATCTCATAAGTATTA+TGG | - | tig0015546:6971-6990 | Msa1356240:CDS | 15.0% |
!!! | TAATCCTTTTTTGAAATTTT+TGG | + | tig0015546:7258-7277 | None:intergenic | 15.0% |
!! | GTATATATATTGAATAAAGG+AGG | + | tig0015546:7048-7067 | None:intergenic | 20.0% |
!! | GTATATATATTGAATAAAGG+AGG | + | tig0015546:7048-7067 | None:intergenic | 20.0% |
! | TCCACCAAAAATTTCAAAAA+AGG | - | tig0015546:7251-7270 | Msa1356240:intron | 25.0% |
!!! | TCCTTTTTTGAAATTTTTGG+TGG | + | tig0015546:7255-7274 | None:intergenic | 25.0% |
! | TAGTTTGGATAATTAAGCTA+TGG | + | tig0015546:7531-7550 | None:intergenic | 25.0% |
!!! | ATTTTTGGACATGATTAGTT+TGG | + | tig0015546:7546-7565 | None:intergenic | 25.0% |
! | AATCATGTCCAAAAATATTC+AGG | - | tig0015546:7550-7569 | Msa1356240:intron | 25.0% |
! | AAAGAAAGAAGAACCAATTA+TGG | - | tig0015546:7723-7742 | Msa1356240:intron | 25.0% |
! | TCCACCAAAAATTTCAAAAA+AGG | - | tig0015546:7251-7270 | Msa1356240:intron | 25.0% |
!!! | TCCTTTTTTGAAATTTTTGG+TGG | + | tig0015546:7255-7274 | None:intergenic | 25.0% |
! | TAGTTTGGATAATTAAGCTA+TGG | + | tig0015546:7531-7550 | None:intergenic | 25.0% |
!!! | ATTTTTGGACATGATTAGTT+TGG | + | tig0015546:7546-7565 | None:intergenic | 25.0% |
! | AATCATGTCCAAAAATATTC+AGG | - | tig0015546:7550-7569 | Msa1356240:intron | 25.0% |
! | AAAGAAAGAAGAACCAATTA+TGG | - | tig0015546:7723-7742 | Msa1356240:intron | 25.0% |
!! | ATTAGAAGAAGCTTTGTTTC+CGG | + | tig0015546:6944-6963 | None:intergenic | 30.0% |
TCTCATAAGTATTATGGCTA+AGG | - | tig0015546:6977-6996 | Msa1356240:CDS | 30.0% | |
!!! | TCACACTACTTTTTTTTAGC+AGG | + | tig0015546:7020-7039 | None:intergenic | 30.0% |
TATATTGAATAAAGGAGGTC+AGG | + | tig0015546:7043-7062 | None:intergenic | 30.0% | |
! | TTTCCACTCCTGAATATTTT+TGG | + | tig0015546:7561-7580 | None:intergenic | 30.0% |
AAGGATCAACTAGAAGTAAT+CGG | - | tig0015546:7604-7623 | Msa1356240:intron | 30.0% | |
!! | ATTAGAAGAAGCTTTGTTTC+CGG | + | tig0015546:6944-6963 | None:intergenic | 30.0% |
TCTCATAAGTATTATGGCTA+AGG | - | tig0015546:6977-6996 | Msa1356240:CDS | 30.0% | |
!!! | TCACACTACTTTTTTTTAGC+AGG | + | tig0015546:7020-7039 | None:intergenic | 30.0% |
TATATTGAATAAAGGAGGTC+AGG | + | tig0015546:7043-7062 | None:intergenic | 30.0% | |
! | TTTCCACTCCTGAATATTTT+TGG | + | tig0015546:7561-7580 | None:intergenic | 30.0% |
AAGGATCAACTAGAAGTAAT+CGG | - | tig0015546:7604-7623 | Msa1356240:intron | 30.0% | |
ATCCTTTGCTTGAAATTGAG+AGG | - | tig0015546:7129-7148 | Msa1356240:CDS | 35.0% | |
TCCTTTGCTTGAAATTGAGA+GGG | - | tig0015546:7130-7149 | Msa1356240:CDS | 35.0% | |
TTGAAATTGAGAGGGAAAGA+GGG | - | tig0015546:7138-7157 | Msa1356240:CDS | 35.0% | |
TGTCCAAAAATATTCAGGAG+TGG | - | tig0015546:7555-7574 | Msa1356240:intron | 35.0% | |
!! | TAGCAGTTTTGTGAGTCTAA+CGG | + | tig0015546:7644-7663 | None:intergenic | 35.0% |
GAAATTCTGTCATGCAGAAT+TGG | - | tig0015546:7669-7688 | Msa1356240:intron | 35.0% | |
TGGTGAAGTGAAAAAGAAAG+AGG | - | tig0015546:7699-7718 | Msa1356240:intron | 35.0% | |
AAGAAGAACCAATTATGGCA+TGG | - | tig0015546:7728-7747 | Msa1356240:intron | 35.0% | |
ATCCTTTGCTTGAAATTGAG+AGG | - | tig0015546:7129-7148 | Msa1356240:CDS | 35.0% | |
TCCTTTGCTTGAAATTGAGA+GGG | - | tig0015546:7130-7149 | Msa1356240:CDS | 35.0% | |
TTGAAATTGAGAGGGAAAGA+GGG | - | tig0015546:7138-7157 | Msa1356240:CDS | 35.0% | |
TGTCCAAAAATATTCAGGAG+TGG | - | tig0015546:7555-7574 | Msa1356240:intron | 35.0% | |
!! | TAGCAGTTTTGTGAGTCTAA+CGG | + | tig0015546:7644-7663 | None:intergenic | 35.0% |
GAAATTCTGTCATGCAGAAT+TGG | - | tig0015546:7669-7688 | Msa1356240:intron | 35.0% | |
TGGTGAAGTGAAAAAGAAAG+AGG | - | tig0015546:7699-7718 | Msa1356240:intron | 35.0% | |
AAGAAGAACCAATTATGGCA+TGG | - | tig0015546:7728-7747 | Msa1356240:intron | 35.0% | |
!! | AAGAAGCTTTGTTTCCGGAA+TGG | + | tig0015546:6939-6958 | None:intergenic | 40.0% |
TCCCTCTCAATTTCAAGCAA+AGG | + | tig0015546:7134-7153 | None:intergenic | 40.0% | |
CTTGAAATTGAGAGGGAAAG+AGG | - | tig0015546:7137-7156 | Msa1356240:CDS | 40.0% | |
GCAGCAAAAGATAGTGATCA+AGG | - | tig0015546:7385-7404 | Msa1356240:intron | 40.0% | |
CAATGCACAGCCAAAAATCA+AGG | - | tig0015546:7411-7430 | Msa1356240:intron | 40.0% | |
!!! | TGGCTTTGGACCTTGATTTT+TGG | + | tig0015546:7424-7443 | None:intergenic | 40.0% |
AACTGCAATCTTCATGGCTT+TGG | + | tig0015546:7438-7457 | None:intergenic | 40.0% | |
AAAGCCATGAAGATTGCAGT+TGG | - | tig0015546:7437-7456 | Msa1356240:intron | 40.0% | |
AACTCCAACTGCAATCTTCA+TGG | + | tig0015546:7444-7463 | None:intergenic | 40.0% | |
AAGATTGCAGTTGGAGTTTC+AGG | - | tig0015546:7446-7465 | Msa1356240:intron | 40.0% | |
AGCAATACAAGGAGATAGCA+AGG | - | tig0015546:7585-7604 | Msa1356240:intron | 40.0% | |
TGAGGATAACCAGTTACACA+AGG | + | tig0015546:7754-7773 | None:intergenic | 40.0% | |
!! | AAGAAGCTTTGTTTCCGGAA+TGG | + | tig0015546:6939-6958 | None:intergenic | 40.0% |
TCCCTCTCAATTTCAAGCAA+AGG | + | tig0015546:7134-7153 | None:intergenic | 40.0% | |
CTTGAAATTGAGAGGGAAAG+AGG | - | tig0015546:7137-7156 | Msa1356240:CDS | 40.0% | |
GCAGCAAAAGATAGTGATCA+AGG | - | tig0015546:7385-7404 | Msa1356240:intron | 40.0% | |
CAATGCACAGCCAAAAATCA+AGG | - | tig0015546:7411-7430 | Msa1356240:intron | 40.0% | |
!!! | TGGCTTTGGACCTTGATTTT+TGG | + | tig0015546:7424-7443 | None:intergenic | 40.0% |
AACTGCAATCTTCATGGCTT+TGG | + | tig0015546:7438-7457 | None:intergenic | 40.0% | |
AAAGCCATGAAGATTGCAGT+TGG | - | tig0015546:7437-7456 | Msa1356240:intron | 40.0% | |
AACTCCAACTGCAATCTTCA+TGG | + | tig0015546:7444-7463 | None:intergenic | 40.0% | |
AAGATTGCAGTTGGAGTTTC+AGG | - | tig0015546:7446-7465 | Msa1356240:intron | 40.0% | |
AGCAATACAAGGAGATAGCA+AGG | - | tig0015546:7585-7604 | Msa1356240:intron | 40.0% | |
TGAGGATAACCAGTTACACA+AGG | + | tig0015546:7754-7773 | None:intergenic | 40.0% | |
! | GTGGAAAGTGCAGCAATACA+AGG | - | tig0015546:7574-7593 | Msa1356240:intron | 45.0% |
CATGCAGAATTGGTGAGTGT+TGG | - | tig0015546:7679-7698 | Msa1356240:intron | 45.0% | |
ACACAAGGCCATGCCATAAT+TGG | + | tig0015546:7739-7758 | None:intergenic | 45.0% | |
TTATCTCACACACAGGGACA+GGG | + | tig0015546:7780-7799 | None:intergenic | 45.0% | |
TGTCCCTGTGTGTGAGATAA+GGG | - | tig0015546:7780-7799 | Msa1356240:five_prime_UTR | 45.0% | |
! | GTGGAAAGTGCAGCAATACA+AGG | - | tig0015546:7574-7593 | Msa1356240:intron | 45.0% |
CATGCAGAATTGGTGAGTGT+TGG | - | tig0015546:7679-7698 | Msa1356240:intron | 45.0% | |
ACACAAGGCCATGCCATAAT+TGG | + | tig0015546:7739-7758 | None:intergenic | 45.0% | |
TTATCTCACACACAGGGACA+GGG | + | tig0015546:7780-7799 | None:intergenic | 45.0% | |
TGTCCCTGTGTGTGAGATAA+GGG | - | tig0015546:7780-7799 | Msa1356240:five_prime_UTR | 45.0% | |
!! | ATGGCATGGCCTTGTGTAAC+TGG | - | tig0015546:7742-7761 | Msa1356240:intron | 50.0% |
CTTATCTCACACACAGGGAC+AGG | + | tig0015546:7781-7800 | None:intergenic | 50.0% | |
CTGTCCCTGTGTGTGAGATA+AGG | - | tig0015546:7779-7798 | Msa1356240:five_prime_UTR | 50.0% | |
CGTCCCTTATCTCACACACA+GGG | + | tig0015546:7786-7805 | None:intergenic | 50.0% | |
TCGTCCCTTATCTCACACAC+AGG | + | tig0015546:7787-7806 | None:intergenic | 50.0% | |
!! | ATGGCATGGCCTTGTGTAAC+TGG | - | tig0015546:7742-7761 | Msa1356240:intron | 50.0% |
CTTATCTCACACACAGGGAC+AGG | + | tig0015546:7781-7800 | None:intergenic | 50.0% | |
CTGTCCCTGTGTGTGAGATA+AGG | - | tig0015546:7779-7798 | Msa1356240:five_prime_UTR | 50.0% | |
CGTCCCTTATCTCACACACA+GGG | + | tig0015546:7786-7805 | None:intergenic | 50.0% | |
TCGTCCCTTATCTCACACAC+AGG | + | tig0015546:7787-7806 | None:intergenic | 50.0% | |
CACACAGGGACAGGGTAATG+AGG | + | tig0015546:7772-7791 | None:intergenic | 55.0% | |
CACACAGGGACAGGGTAATG+AGG | + | tig0015546:7772-7791 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0015546 | gene | 6927 | 7828 | 6927 | ID=Msa1356240;Name=Msa1356240 |
tig0015546 | mRNA | 6927 | 7828 | 6927 | ID=Msa1356240-mRNA-1;Parent=Msa1356240;Name=Msa1356240-mRNA-1;_AED=0.33;_eAED=0.33;_QI=63|1|0.66|1|1|1|3|0|114 |
tig0015546 | exon | 6927 | 7183 | 6927 | ID=Msa1356240-mRNA-1:exon:9820;Parent=Msa1356240-mRNA-1 |
tig0015546 | exon | 7288 | 7366 | 7288 | ID=Msa1356240-mRNA-1:exon:9819;Parent=Msa1356240-mRNA-1 |
tig0015546 | exon | 7757 | 7828 | 7757 | ID=Msa1356240-mRNA-1:exon:9818;Parent=Msa1356240-mRNA-1 |
tig0015546 | five_prime_UTR | 7766 | 7828 | 7766 | ID=Msa1356240-mRNA-1:five_prime_utr;Parent=Msa1356240-mRNA-1 |
tig0015546 | CDS | 7757 | 7765 | 7757 | ID=Msa1356240-mRNA-1:cds;Parent=Msa1356240-mRNA-1 |
tig0015546 | CDS | 7288 | 7366 | 7288 | ID=Msa1356240-mRNA-1:cds;Parent=Msa1356240-mRNA-1 |
tig0015546 | CDS | 6927 | 7183 | 6927 | ID=Msa1356240-mRNA-1:cds;Parent=Msa1356240-mRNA-1 |
Gene Sequence |
Protein sequence |