Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512420 | XP_003601487.3 | 86.957 | 115 | 14 | 1 | 1 | 114 | 1 | 115 | 1.89e-55 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512420 | sp|Q5PNZ7|HIP46_ARATH | 50.602 | 83 | 38 | 1 | 3 | 82 | 2 | 84 | 4.73e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512420 | A0A396J1F2 | 86.957 | 115 | 14 | 1 | 1 | 114 | 1 | 115 | 9.04e-56 | 178 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0235190 | Msa0512420 | 0.808372 | 3.199204e-50 | -8.615850e-47 |
| Msa0372240 | Msa0512420 | 0.842469 | 2.536965e-58 | -8.615850e-47 |
| Msa0273570 | Msa0512420 | 0.812375 | 4.374944e-51 | -8.615850e-47 |
| Msa0313920 | Msa0512420 | 0.816008 | 6.899116e-52 | -8.615850e-47 |
| Msa0350670 | Msa0512420 | 0.800282 | 1.550454e-48 | -8.615850e-47 |
| Msa0363980 | Msa0512420 | 0.801907 | 7.213317e-49 | -8.615850e-47 |
| Msa0512420 | Msa0533430 | 0.858656 | 7.092425e-63 | -8.615850e-47 |
| Msa0512420 | Msa0580610 | 0.844573 | 6.954732e-59 | -8.615850e-47 |
| Msa0512420 | Msa0661870 | 0.817407 | 3.351323e-52 | -8.615850e-47 |
| Msa0512420 | Msa0818010 | 0.846088 | 2.704988e-59 | -8.615850e-47 |
| Msa0512420 | Msa0912500 | 0.813233 | 2.839679e-51 | -8.615850e-47 |
| Msa0512420 | Msa1006250 | 0.833616 | 4.813287e-56 | -8.615850e-47 |
| Msa0512420 | Msa1027240 | 0.814261 | 1.685882e-51 | -8.615850e-47 |
| Msa0512420 | Msa1198090 | 0.818457 | 1.941101e-52 | -8.615850e-47 |
| Msa0512420 | Msa1356240 | 0.814611 | 1.410966e-51 | -8.615850e-47 |
| Msa0512420 | Msa1359820 | 0.828960 | 6.723908e-55 | -8.615850e-47 |
| Msa0512420 | Msa1419010 | 0.821531 | 3.842646e-53 | -8.615850e-47 |
| Msa0512420 | Msa1444370 | 0.827143 | 1.841413e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512420 | MtrunA17_Chr3g0120531 | 86.957 | 115 | 14 | 1 | 1 | 114 | 1 | 115 | 1.74e-59 | 178 |
| Msa0512420 | MtrunA17_Chr3g0120541 | 71.429 | 119 | 25 | 3 | 1 | 114 | 1 | 115 | 1.40e-49 | 153 |
| Msa0512420 | MtrunA17_Chr3g0120551 | 59.664 | 119 | 41 | 3 | 1 | 114 | 1 | 117 | 1.42e-38 | 125 |
| Msa0512420 | MtrunA17_Chr2g0290831 | 52.703 | 74 | 35 | 0 | 3 | 76 | 2 | 75 | 8.14e-21 | 79.3 |
| Msa0512420 | MtrunA17_Chr5g0438551 | 43.609 | 133 | 51 | 5 | 4 | 113 | 2 | 133 | 1.52e-20 | 80.5 |
| Msa0512420 | MtrunA17_Chr6g0483521 | 51.613 | 62 | 30 | 0 | 3 | 64 | 2 | 63 | 2.58e-16 | 71.6 |
| Msa0512420 | MtrunA17_Chr6g0483511 | 51.613 | 62 | 30 | 0 | 3 | 64 | 2 | 63 | 2.39e-15 | 68.2 |
| Msa0512420 | MtrunA17_Chr6g0483581 | 46.575 | 73 | 39 | 0 | 3 | 75 | 2 | 74 | 5.20e-15 | 68.2 |
| Msa0512420 | MtrunA17_Chr6g0483561 | 45.714 | 70 | 38 | 0 | 3 | 72 | 2 | 71 | 2.57e-14 | 66.2 |
| Msa0512420 | MtrunA17_Chr6g0469651 | 48.571 | 70 | 33 | 2 | 4 | 73 | 2 | 68 | 1.01e-11 | 57.8 |
| Msa0512420 | MtrunA17_Chr6g0469571 | 44.928 | 69 | 35 | 2 | 5 | 73 | 3 | 68 | 3.89e-11 | 55.8 |
| Msa0512420 | MtrunA17_Chr6g0469551 | 44.928 | 69 | 35 | 2 | 5 | 73 | 3 | 68 | 4.87e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512420 | AT3G20180.3 | 43.617 | 94 | 52 | 1 | 3 | 96 | 2 | 94 | 2.64e-18 | 74.7 |
| Msa0512420 | AT5G48290.1 | 50.602 | 83 | 38 | 1 | 3 | 82 | 2 | 84 | 4.81e-18 | 75.5 |
| Msa0512420 | AT3G20180.2 | 42.553 | 94 | 53 | 1 | 3 | 96 | 21 | 113 | 1.13e-17 | 73.6 |
| Msa0512420 | AT3G07600.1 | 46.154 | 78 | 42 | 0 | 3 | 80 | 2 | 79 | 1.71e-17 | 73.6 |
| Msa0512420 | AT3G20180.4 | 42.391 | 92 | 52 | 1 | 5 | 96 | 2 | 92 | 5.43e-17 | 71.2 |
| Msa0512420 | AT3G20180.1 | 42.697 | 89 | 50 | 1 | 8 | 96 | 3 | 90 | 1.12e-16 | 70.5 |
| Msa0512420 | AT5G48290.3 | 41.748 | 103 | 37 | 2 | 3 | 82 | 2 | 104 | 2.66e-14 | 66.2 |
| Msa0512420 | AT5G48290.2 | 48.649 | 74 | 35 | 1 | 12 | 82 | 1 | 74 | 1.72e-13 | 63.5 |
| Msa0512420 | AT1G55775.1 | 45.070 | 71 | 38 | 1 | 2 | 72 | 3 | 72 | 4.28e-13 | 61.6 |
| Msa0512420 | AT4G05030.2 | 45.333 | 75 | 40 | 1 | 1 | 75 | 1 | 74 | 1.14e-12 | 58.9 |
| Msa0512420 | AT4G05030.1 | 43.056 | 72 | 41 | 0 | 4 | 75 | 36 | 107 | 6.64e-12 | 57.8 |
Find 29 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATTGCAGTTGGAGTTTC+AGG | 0.157536 | 3_4:+62178044 | Msa0512420:CDS |
| TTTATATCTCATAAGTATTA+TGG | 0.216328 | 3_4:+62177570 | Msa0512420:exon |
| ACTTATGAGATATAAATAAA+TGG | 0.288883 | 3_4:-62177563 | None:intergenic |
| ATTAGAAGAAGCTTTGTTTC+CGG | 0.305912 | 3_4:-62177540 | None:intergenic |
| AACTGCAATCTTCATGGCTT+TGG | 0.309449 | 3_4:-62178033 | None:intergenic |
| ACACAAGGCCATGCCATAAT+TGG | 0.314736 | 3_4:-62178334 | None:intergenic |
| AAAGAAAGAAGAACCAATTA+TGG | 0.328215 | 3_4:+62178321 | Msa0512420:CDS |
| AACTCCAACTGCAATCTTCA+TGG | 0.358381 | 3_4:-62178039 | None:intergenic |
| GAAATTCTGTCATGCAGAAT+TGG | 0.360093 | 3_4:+62178267 | Msa0512420:CDS |
| AAGGATCAAATAGAAGTAAT+CGG | 0.441308 | 3_4:+62178202 | Msa0512420:CDS |
| ACTTTAATAATACACCATTC+CGG | 0.451555 | 3_4:+62177521 | None:intergenic |
| ATGGCATGGCCTTGTGTAGC+TGG | 0.465320 | 3_4:+62178340 | Msa0512420:CDS |
| CTTATCTCACACACAGGGAC+AGG | 0.478978 | 3_4:-62178376 | None:intergenic |
| CTGTCCCTGTGTGTGAGATA+AGG | 0.485521 | 3_4:+62178377 | Msa0512420:CDS |
| TGTCCCTGTGTGTGAGATAA+GGG | 0.495058 | 3_4:+62178378 | Msa0512420:CDS |
| TCTCATAAGTATTATGGCTA+AGG | 0.519265 | 3_4:+62177576 | Msa0512420:exon |
| TCTTGATGACATTCACATGA+TGG | 0.521926 | 3_4:-62178416 | None:intergenic |
| GTGGAAAGTGCAGCAATACA+AGG | 0.533044 | 3_4:+62178172 | Msa0512420:CDS |
| GCAGCAAAAGATAGTGATCA+AGG | 0.536634 | 3_4:+62177983 | Msa0512420:intron |
| AAGAAGCTTTGTTTCCGGAA+TGG | 0.538643 | 3_4:-62177535 | None:intergenic |
| CACACAGGGACAGGGTAATG+AGG | 0.564551 | 3_4:-62178367 | None:intergenic |
| AAAGCCATGAAGATTGCAGT+TGG | 0.583776 | 3_4:+62178035 | Msa0512420:CDS |
| CATGCAGAATTGGTGAGTGT+TGG | 0.620675 | 3_4:+62178277 | Msa0512420:CDS |
| AGCAATACAAGGAGATAGCA+AGG | 0.620845 | 3_4:+62178183 | Msa0512420:CDS |
| AAGAAGAACCAATTATGGCA+TGG | 0.625011 | 3_4:+62178326 | Msa0512420:CDS |
| TCGTCCCTTATCTCACACAC+AGG | 0.651929 | 3_4:-62178382 | None:intergenic |
| TTATCTCACACACAGGGACA+GGG | 0.661020 | 3_4:-62178375 | None:intergenic |
| TGAGGATAACCAGCTACACA+AGG | 0.666785 | 3_4:-62178349 | None:intergenic |
| CGTCCCTTATCTCACACACA+GGG | 0.689018 | 3_4:-62178381 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTATATATATTGAATAA+AGG | - | chr3_4:62177650-62177669 | None:intergenic | 10.0% |
| !! | ATAGTATATATATTGAATAA+AGG | - | chr3_4:62177650-62177669 | None:intergenic | 10.0% |
| !! | ACTTATGAGATATAAATAAA+TGG | - | chr3_4:62177566-62177585 | None:intergenic | 15.0% |
| !! | TTTATATCTCATAAGTATTA+TGG | + | chr3_4:62177570-62177589 | Msa0512420:exon | 15.0% |
| !!! | TAATCCTTTTTTGAAATTTT+TGG | - | chr3_4:62177857-62177876 | None:intergenic | 15.0% |
| !! | ACTTATGAGATATAAATAAA+TGG | - | chr3_4:62177566-62177585 | None:intergenic | 15.0% |
| !! | TTTATATCTCATAAGTATTA+TGG | + | chr3_4:62177570-62177589 | Msa0512420:exon | 15.0% |
| !!! | TAATCCTTTTTTGAAATTTT+TGG | - | chr3_4:62177857-62177876 | None:intergenic | 15.0% |
| !! | GTATATATATTGAATAAAGG+AGG | - | chr3_4:62177647-62177666 | None:intergenic | 20.0% |
| !! | GTATATATATTGAATAAAGG+AGG | - | chr3_4:62177647-62177666 | None:intergenic | 20.0% |
| ! | TCCACCAAAAATTTCAAAAA+AGG | + | chr3_4:62177850-62177869 | Msa0512420:intron | 25.0% |
| !!! | TCCTTTTTTGAAATTTTTGG+TGG | - | chr3_4:62177854-62177873 | None:intergenic | 25.0% |
| ! | TAGTTTGGATAATTAAGCTA+TGG | - | chr3_4:62178129-62178148 | None:intergenic | 25.0% |
| !!! | ATTTTTGGACATGATTAGTT+TGG | - | chr3_4:62178144-62178163 | None:intergenic | 25.0% |
| ! | AATCATGTCCAAAAATATTC+AGG | + | chr3_4:62178148-62178167 | Msa0512420:intron | 25.0% |
| ! | AAGGATCAAATAGAAGTAAT+CGG | + | chr3_4:62178202-62178221 | Msa0512420:CDS | 25.0% |
| ! | AAAGAAAGAAGAACCAATTA+TGG | + | chr3_4:62178321-62178340 | Msa0512420:CDS | 25.0% |
| ! | TCCACCAAAAATTTCAAAAA+AGG | + | chr3_4:62177850-62177869 | Msa0512420:intron | 25.0% |
| !!! | TCCTTTTTTGAAATTTTTGG+TGG | - | chr3_4:62177854-62177873 | None:intergenic | 25.0% |
| ! | TAGTTTGGATAATTAAGCTA+TGG | - | chr3_4:62178129-62178148 | None:intergenic | 25.0% |
| !!! | ATTTTTGGACATGATTAGTT+TGG | - | chr3_4:62178144-62178163 | None:intergenic | 25.0% |
| ! | AATCATGTCCAAAAATATTC+AGG | + | chr3_4:62178148-62178167 | Msa0512420:intron | 25.0% |
| ! | AAGGATCAAATAGAAGTAAT+CGG | + | chr3_4:62178202-62178221 | Msa0512420:CDS | 25.0% |
| ! | AAAGAAAGAAGAACCAATTA+TGG | + | chr3_4:62178321-62178340 | Msa0512420:CDS | 25.0% |
| !! | ATTAGAAGAAGCTTTGTTTC+CGG | - | chr3_4:62177543-62177562 | None:intergenic | 30.0% |
| TCTCATAAGTATTATGGCTA+AGG | + | chr3_4:62177576-62177595 | Msa0512420:exon | 30.0% | |
| !!! | TCACACTACTTTTTTTTAGC+AGG | - | chr3_4:62177619-62177638 | None:intergenic | 30.0% |
| TATATTGAATAAAGGAGGTC+AGG | - | chr3_4:62177642-62177661 | None:intergenic | 30.0% | |
| ! | TTTCCACTCCTGAATATTTT+TGG | - | chr3_4:62178159-62178178 | None:intergenic | 30.0% |
| !! | ATTAGAAGAAGCTTTGTTTC+CGG | - | chr3_4:62177543-62177562 | None:intergenic | 30.0% |
| TCTCATAAGTATTATGGCTA+AGG | + | chr3_4:62177576-62177595 | Msa0512420:exon | 30.0% | |
| !!! | TCACACTACTTTTTTTTAGC+AGG | - | chr3_4:62177619-62177638 | None:intergenic | 30.0% |
| TATATTGAATAAAGGAGGTC+AGG | - | chr3_4:62177642-62177661 | None:intergenic | 30.0% | |
| ! | TTTCCACTCCTGAATATTTT+TGG | - | chr3_4:62178159-62178178 | None:intergenic | 30.0% |
| ATCCTTTGCTTGAAATTGAG+AGG | + | chr3_4:62177728-62177747 | Msa0512420:intron | 35.0% | |
| TCCTTTGCTTGAAATTGAGA+GGG | + | chr3_4:62177729-62177748 | Msa0512420:intron | 35.0% | |
| TTGAAATTGAGAGGGAAAGA+GGG | + | chr3_4:62177737-62177756 | Msa0512420:intron | 35.0% | |
| TGTCCAAAAATATTCAGGAG+TGG | + | chr3_4:62178153-62178172 | Msa0512420:intron | 35.0% | |
| GAAATTCTGTCATGCAGAAT+TGG | + | chr3_4:62178267-62178286 | Msa0512420:CDS | 35.0% | |
| TGGTGAAGTGAAAAAGAAAG+AGG | + | chr3_4:62178297-62178316 | Msa0512420:CDS | 35.0% | |
| AAGAAGAACCAATTATGGCA+TGG | + | chr3_4:62178326-62178345 | Msa0512420:CDS | 35.0% | |
| ATCCTTTGCTTGAAATTGAG+AGG | + | chr3_4:62177728-62177747 | Msa0512420:intron | 35.0% | |
| TCCTTTGCTTGAAATTGAGA+GGG | + | chr3_4:62177729-62177748 | Msa0512420:intron | 35.0% | |
| TTGAAATTGAGAGGGAAAGA+GGG | + | chr3_4:62177737-62177756 | Msa0512420:intron | 35.0% | |
| TGTCCAAAAATATTCAGGAG+TGG | + | chr3_4:62178153-62178172 | Msa0512420:intron | 35.0% | |
| GAAATTCTGTCATGCAGAAT+TGG | + | chr3_4:62178267-62178286 | Msa0512420:CDS | 35.0% | |
| TGGTGAAGTGAAAAAGAAAG+AGG | + | chr3_4:62178297-62178316 | Msa0512420:CDS | 35.0% | |
| AAGAAGAACCAATTATGGCA+TGG | + | chr3_4:62178326-62178345 | Msa0512420:CDS | 35.0% | |
| !! | AAGAAGCTTTGTTTCCGGAA+TGG | - | chr3_4:62177538-62177557 | None:intergenic | 40.0% |
| TCCCTCTCAATTTCAAGCAA+AGG | - | chr3_4:62177733-62177752 | None:intergenic | 40.0% | |
| CTTGAAATTGAGAGGGAAAG+AGG | + | chr3_4:62177736-62177755 | Msa0512420:intron | 40.0% | |
| GCAGCAAAAGATAGTGATCA+AGG | + | chr3_4:62177983-62178002 | Msa0512420:intron | 40.0% | |
| CAATGCACAGCCAAAAATCA+AGG | + | chr3_4:62178009-62178028 | Msa0512420:CDS | 40.0% | |
| !!! | TGGCTTTGGACCTTGATTTT+TGG | - | chr3_4:62178022-62178041 | None:intergenic | 40.0% |
| AACTGCAATCTTCATGGCTT+TGG | - | chr3_4:62178036-62178055 | None:intergenic | 40.0% | |
| AAAGCCATGAAGATTGCAGT+TGG | + | chr3_4:62178035-62178054 | Msa0512420:CDS | 40.0% | |
| AACTCCAACTGCAATCTTCA+TGG | - | chr3_4:62178042-62178061 | None:intergenic | 40.0% | |
| AAGATTGCAGTTGGAGTTTC+AGG | + | chr3_4:62178044-62178063 | Msa0512420:CDS | 40.0% | |
| AGCAATACAAGGAGATAGCA+AGG | + | chr3_4:62178183-62178202 | Msa0512420:CDS | 40.0% | |
| !! | AAGAAGCTTTGTTTCCGGAA+TGG | - | chr3_4:62177538-62177557 | None:intergenic | 40.0% |
| TCCCTCTCAATTTCAAGCAA+AGG | - | chr3_4:62177733-62177752 | None:intergenic | 40.0% | |
| CTTGAAATTGAGAGGGAAAG+AGG | + | chr3_4:62177736-62177755 | Msa0512420:intron | 40.0% | |
| GCAGCAAAAGATAGTGATCA+AGG | + | chr3_4:62177983-62178002 | Msa0512420:intron | 40.0% | |
| CAATGCACAGCCAAAAATCA+AGG | + | chr3_4:62178009-62178028 | Msa0512420:CDS | 40.0% | |
| !!! | TGGCTTTGGACCTTGATTTT+TGG | - | chr3_4:62178022-62178041 | None:intergenic | 40.0% |
| AACTGCAATCTTCATGGCTT+TGG | - | chr3_4:62178036-62178055 | None:intergenic | 40.0% | |
| AAAGCCATGAAGATTGCAGT+TGG | + | chr3_4:62178035-62178054 | Msa0512420:CDS | 40.0% | |
| AACTCCAACTGCAATCTTCA+TGG | - | chr3_4:62178042-62178061 | None:intergenic | 40.0% | |
| AAGATTGCAGTTGGAGTTTC+AGG | + | chr3_4:62178044-62178063 | Msa0512420:CDS | 40.0% | |
| AGCAATACAAGGAGATAGCA+AGG | + | chr3_4:62178183-62178202 | Msa0512420:CDS | 40.0% | |
| ! | GTGGAAAGTGCAGCAATACA+AGG | + | chr3_4:62178172-62178191 | Msa0512420:CDS | 45.0% |
| CATGCAGAATTGGTGAGTGT+TGG | + | chr3_4:62178277-62178296 | Msa0512420:CDS | 45.0% | |
| ACACAAGGCCATGCCATAAT+TGG | - | chr3_4:62178337-62178356 | None:intergenic | 45.0% | |
| TGAGGATAACCAGCTACACA+AGG | - | chr3_4:62178352-62178371 | None:intergenic | 45.0% | |
| TTATCTCACACACAGGGACA+GGG | - | chr3_4:62178378-62178397 | None:intergenic | 45.0% | |
| TGTCCCTGTGTGTGAGATAA+GGG | + | chr3_4:62178378-62178397 | Msa0512420:CDS | 45.0% | |
| ! | GTGGAAAGTGCAGCAATACA+AGG | + | chr3_4:62178172-62178191 | Msa0512420:CDS | 45.0% |
| CATGCAGAATTGGTGAGTGT+TGG | + | chr3_4:62178277-62178296 | Msa0512420:CDS | 45.0% | |
| ACACAAGGCCATGCCATAAT+TGG | - | chr3_4:62178337-62178356 | None:intergenic | 45.0% | |
| TGAGGATAACCAGCTACACA+AGG | - | chr3_4:62178352-62178371 | None:intergenic | 45.0% | |
| TTATCTCACACACAGGGACA+GGG | - | chr3_4:62178378-62178397 | None:intergenic | 45.0% | |
| TGTCCCTGTGTGTGAGATAA+GGG | + | chr3_4:62178378-62178397 | Msa0512420:CDS | 45.0% | |
| !! | TTTGAATTAAAAATAATTAA+TGG | - | chr3_4:62178094-62178113 | None:intergenic | 5.0% |
| !! | TTTGAATTAAAAATAATTAA+TGG | - | chr3_4:62178094-62178113 | None:intergenic | 5.0% |
| CTTATCTCACACACAGGGAC+AGG | - | chr3_4:62178379-62178398 | None:intergenic | 50.0% | |
| CTGTCCCTGTGTGTGAGATA+AGG | + | chr3_4:62178377-62178396 | Msa0512420:CDS | 50.0% | |
| CGTCCCTTATCTCACACACA+GGG | - | chr3_4:62178384-62178403 | None:intergenic | 50.0% | |
| TCGTCCCTTATCTCACACAC+AGG | - | chr3_4:62178385-62178404 | None:intergenic | 50.0% | |
| CTTATCTCACACACAGGGAC+AGG | - | chr3_4:62178379-62178398 | None:intergenic | 50.0% | |
| CTGTCCCTGTGTGTGAGATA+AGG | + | chr3_4:62178377-62178396 | Msa0512420:CDS | 50.0% | |
| CGTCCCTTATCTCACACACA+GGG | - | chr3_4:62178384-62178403 | None:intergenic | 50.0% | |
| TCGTCCCTTATCTCACACAC+AGG | - | chr3_4:62178385-62178404 | None:intergenic | 50.0% | |
| !! | ATGGCATGGCCTTGTGTAGC+TGG | + | chr3_4:62178340-62178359 | Msa0512420:CDS | 55.0% |
| CACACAGGGACAGGGTAATG+AGG | - | chr3_4:62178370-62178389 | None:intergenic | 55.0% | |
| !! | ATGGCATGGCCTTGTGTAGC+TGG | + | chr3_4:62178340-62178359 | Msa0512420:CDS | 55.0% |
| CACACAGGGACAGGGTAATG+AGG | - | chr3_4:62178370-62178389 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 62177526 | 62178426 | 62177526 | ID=Msa0512420;Name=Msa0512420 |
| chr3_4 | mRNA | 62177526 | 62178426 | 62177526 | ID=Msa0512420-mRNA-1;Parent=Msa0512420;Name=Msa0512420-mRNA-1;_AED=0.41;_eAED=0.41;_QI=63|1|0.66|1|1|1|3|0|114 |
| chr3_4 | exon | 62177526 | 62177597 | 62177526 | ID=Msa0512420-mRNA-1:exon:15385;Parent=Msa0512420-mRNA-1 |
| chr3_4 | exon | 62177987 | 62178065 | 62177987 | ID=Msa0512420-mRNA-1:exon:15386;Parent=Msa0512420-mRNA-1 |
| chr3_4 | exon | 62178170 | 62178426 | 62178170 | ID=Msa0512420-mRNA-1:exon:15387;Parent=Msa0512420-mRNA-1 |
| chr3_4 | five_prime_UTR | 62177526 | 62177588 | 62177526 | ID=Msa0512420-mRNA-1:five_prime_utr;Parent=Msa0512420-mRNA-1 |
| chr3_4 | CDS | 62177589 | 62177597 | 62177589 | ID=Msa0512420-mRNA-1:cds;Parent=Msa0512420-mRNA-1 |
| chr3_4 | CDS | 62177987 | 62178065 | 62177987 | ID=Msa0512420-mRNA-1:cds;Parent=Msa0512420-mRNA-1 |
| chr3_4 | CDS | 62178170 | 62178426 | 62178170 | ID=Msa0512420-mRNA-1:cds;Parent=Msa0512420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
