Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356870 | XP_003591288.1 | 93.857 | 407 | 18 | 1 | 1 | 407 | 1 | 400 | 0.0 | 785 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356870 | sp|Q8L5J1|MAN4_SOLLC | 59.838 | 371 | 144 | 3 | 36 | 405 | 32 | 398 | 4.44e-166 | 474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356870 | G7IBN8 | 93.857 | 407 | 18 | 1 | 1 | 407 | 1 | 400 | 0.0 | 785 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0513350 | Msa1356870 | 0.862309 | 5.550356e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356870 | MtrunA17_Chr1g0193531 | 93.857 | 407 | 18 | 1 | 1 | 407 | 1 | 400 | 0.0 | 785 |
| Msa1356870 | MtrunA17_Chr1g0193601 | 82.064 | 407 | 68 | 2 | 1 | 406 | 1 | 403 | 0.0 | 694 |
| Msa1356870 | MtrunA17_Chr1g0193611 | 80.835 | 407 | 73 | 2 | 1 | 406 | 1 | 403 | 0.0 | 685 |
| Msa1356870 | MtrunA17_Chr1g0193551 | 79.218 | 409 | 77 | 3 | 1 | 406 | 1 | 404 | 0.0 | 680 |
| Msa1356870 | MtrunA17_Chr1g0193541 | 72.549 | 408 | 71 | 5 | 1 | 406 | 1 | 369 | 0.0 | 596 |
| Msa1356870 | MtrunA17_Chr7g0271511 | 71.314 | 373 | 102 | 3 | 35 | 406 | 61 | 429 | 0.0 | 565 |
| Msa1356870 | MtrunA17_Chr3g0141751 | 60.800 | 375 | 140 | 4 | 36 | 407 | 26 | 396 | 1.79e-169 | 480 |
| Msa1356870 | MtrunA17_Chr5g0404601 | 56.784 | 398 | 169 | 3 | 12 | 407 | 8 | 404 | 2.58e-168 | 478 |
| Msa1356870 | MtrunA17_Chr4g0020521 | 55.556 | 405 | 170 | 4 | 3 | 406 | 9 | 404 | 2.23e-164 | 467 |
| Msa1356870 | MtrunA17_Chr7g0245051 | 53.639 | 371 | 169 | 2 | 36 | 403 | 59 | 429 | 5.91e-151 | 435 |
| Msa1356870 | MtrunA17_Chr8g0334501 | 54.865 | 370 | 164 | 2 | 37 | 403 | 63 | 432 | 3.42e-150 | 433 |
| Msa1356870 | MtrunA17_Chr7g0245101 | 53.369 | 371 | 170 | 2 | 36 | 403 | 60 | 430 | 1.66e-149 | 431 |
| Msa1356870 | MtrunA17_Chr2g0324441 | 44.974 | 378 | 202 | 4 | 35 | 406 | 39 | 416 | 1.82e-122 | 361 |
| Msa1356870 | MtrunA17_Chr4g0040121 | 42.784 | 388 | 217 | 3 | 25 | 407 | 28 | 415 | 8.59e-122 | 360 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356870 | AT5G66460.1 | 56.079 | 403 | 175 | 2 | 6 | 407 | 1 | 402 | 6.87e-162 | 462 |
| Msa1356870 | AT1G02310.1 | 56.072 | 387 | 156 | 7 | 28 | 406 | 21 | 401 | 6.93e-159 | 454 |
| Msa1356870 | AT1G02310.2 | 56.072 | 387 | 156 | 7 | 28 | 406 | 41 | 421 | 7.33e-159 | 454 |
| Msa1356870 | AT3G10890.1 | 48.872 | 399 | 201 | 3 | 11 | 406 | 6 | 404 | 9.08e-147 | 423 |
| Msa1356870 | AT5G01930.1 | 48.910 | 413 | 201 | 4 | 1 | 403 | 5 | 417 | 1.66e-146 | 424 |
| Msa1356870 | AT3G10900.1 | 48.485 | 396 | 196 | 5 | 11 | 402 | 8 | 399 | 6.92e-141 | 408 |
| Msa1356870 | AT2G20680.1 | 44.800 | 375 | 203 | 3 | 35 | 405 | 41 | 415 | 2.12e-124 | 367 |
| Msa1356870 | AT4G28320.1 | 41.975 | 405 | 231 | 3 | 5 | 405 | 10 | 414 | 2.30e-121 | 359 |
| Msa1356870 | AT3G30540.1 | 42.733 | 344 | 153 | 5 | 11 | 351 | 8 | 310 | 7.85e-98 | 295 |
Find 83 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAACTCTGCTATAATTAT+TGG | 0.086339 | tig0015877:+21107 | None:intergenic |
| ATTTATCAACAAATGCATTT+TGG | 0.134055 | tig0015877:+21174 | None:intergenic |
| AGGCATGGGGTTTCAAATTT+TGG | 0.144593 | tig0015877:-24169 | None:intergenic |
| GTGAATAATTGGAATGATTT+TGG | 0.150257 | tig0015877:-22592 | Msa1356870:CDS |
| AAAATGCATTTGTTGATAAA+TGG | 0.170917 | tig0015877:-21172 | Msa1356870:CDS |
| TACTGAGCTTAGTGAATAAT+TGG | 0.210556 | tig0015877:-22603 | Msa1356870:CDS |
| GCTTGGTTCCATAACTAAAA+AGG | 0.253539 | tig0015877:+20806 | None:intergenic |
| CTGGATATAGCATAGATAAA+AGG | 0.258107 | tig0015877:-21067 | Msa1356870:CDS |
| CCAATAATTATAGCAGAGTT+TGG | 0.292777 | tig0015877:-21107 | Msa1356870:CDS |
| ATATCAGAGGCAAGCAAATA+TGG | 0.306914 | tig0015877:-22637 | Msa1356870:CDS |
| TAGCACCAACGTTAACTCTT+TGG | 0.312061 | tig0015877:+24097 | None:intergenic |
| CCTCGTTACCTAAATGATTC+AGG | 0.329449 | tig0015877:-22117 | Msa1356870:CDS |
| GACGTATTTACTAGTGGCTT+TGG | 0.335661 | tig0015877:-24142 | Msa1356870:CDS |
| ATGGATAGGAGCACATATTC+AGG | 0.347244 | tig0015877:-21153 | Msa1356870:CDS |
| TATTGATAGCAATCATTTGC+TGG | 0.358557 | tig0015877:-21712 | Msa1356870:CDS |
| AGCACCAACGTTAACTCTTT+GGG | 0.359961 | tig0015877:+24098 | None:intergenic |
| GTTCCGACTTGAGCAGTATT+GGG | 0.368434 | tig0015877:+21633 | None:intergenic |
| TATAGAGTTTACCATTGATC+AGG | 0.378847 | tig0015877:+21552 | None:intergenic |
| TGAATGGATTCAATTCCTAT+TGG | 0.380662 | tig0015877:-24008 | Msa1356870:CDS |
| ATAGGACTTGAAGGATTCTA+TGG | 0.390308 | tig0015877:-21687 | Msa1356870:CDS |
| ATTGATAGCACTTGTAGATA+TGG | 0.392793 | tig0015877:+21016 | None:intergenic |
| TTGTAGTATTGCTTGACAAC+GGG | 0.393262 | tig0015877:+22493 | None:intergenic |
| TTGCTGGAAATAGGACTTGA+AGG | 0.402685 | tig0015877:-21696 | Msa1356870:CDS |
| AGCAATCATTTGCTGGAAAT+AGG | 0.402917 | tig0015877:-21705 | Msa1356870:CDS |
| TCTCAACATGGTTTAAATGT+AGG | 0.415757 | tig0015877:-23922 | Msa1356870:CDS |
| TGATCCATCTACAAGTTCTA+AGG | 0.431117 | tig0015877:-23968 | Msa1356870:CDS |
| AGTTCCGACTTGAGCAGTAT+TGG | 0.431927 | tig0015877:+21632 | None:intergenic |
| TGATTCAGGAAAATCAATTC+AGG | 0.436017 | tig0015877:-22103 | Msa1356870:intron |
| TAGATTGTTGTTTGATGACT+TGG | 0.450706 | tig0015877:+20889 | None:intergenic |
| GATTTGAGGAATTTGATTGT+TGG | 0.453318 | tig0015877:+21599 | None:intergenic |
| CTTGTATAACACCCCACTAA+TGG | 0.457282 | tig0015877:+22179 | None:intergenic |
| TGCCATGGTTGTTAACCAAT+AGG | 0.458306 | tig0015877:+23993 | None:intergenic |
| TGGATATAGCATAGATAAAA+GGG | 0.465855 | tig0015877:-21066 | Msa1356870:CDS |
| GCTGGTTTCGTTCAAAGAAA+AGG | 0.466494 | tig0015877:-24066 | Msa1356870:CDS |
| AGAACATGGGCTTTCAATGA+TGG | 0.480030 | tig0015877:-23898 | Msa1356870:CDS |
| AAAGCTCTTCAAATCTCTCC+TGG | 0.483944 | tig0015877:-23868 | Msa1356870:CDS |
| GTGACCTTAGAACTTGTAGA+TGG | 0.484931 | tig0015877:+23964 | None:intergenic |
| TTGAGAAGCTTGTTGAAAAG+TGG | 0.491882 | tig0015877:+23939 | None:intergenic |
| GGAAAGTCTTCAAAGTCAGC+TGG | 0.501146 | tig0015877:-21086 | Msa1356870:CDS |
| TTCTGGCAACTCATGTCTCA+AGG | 0.508483 | tig0015877:-20969 | Msa1356870:CDS |
| TTCATATATACCCTGATCAA+TGG | 0.511468 | tig0015877:-21563 | Msa1356870:intron |
| GTCTCAAGGGATGGATAACA+TGG | 0.513177 | tig0015877:-20955 | Msa1356870:CDS |
| ACAAGAAAGAACACCATTAG+TGG | 0.514378 | tig0015877:-22192 | Msa1356870:CDS |
| GGGAAGACGCACTATGTGAA+TGG | 0.515313 | tig0015877:-24024 | Msa1356870:CDS |
| ATCAATGGAGGCTCATGTGC+AGG | 0.526032 | tig0015877:-20999 | Msa1356870:CDS |
| ATATCTACAAGTGCTATCAA+TGG | 0.528493 | tig0015877:-21014 | Msa1356870:CDS |
| TTGATCAGGGTATATATGAA+TGG | 0.530724 | tig0015877:+21566 | None:intergenic |
| TGTGGCTGATGCAGGATACA+AGG | 0.532823 | tig0015877:-21212 | Msa1356870:intron |
| CATTAGTGGGGTGTTATACA+AGG | 0.534312 | tig0015877:-22178 | Msa1356870:CDS |
| GTTGGTGCTAACATTGGTGC+TGG | 0.544873 | tig0015877:-24084 | Msa1356870:CDS |
| GCATTTGTTGATAAATGGAT+AGG | 0.551352 | tig0015877:-21167 | Msa1356870:CDS |
| CTTTGGCTCTTATTCAACAT+GGG | 0.553677 | tig0015877:-24125 | Msa1356870:CDS |
| CCTGAATCATTTAGGTAACG+AGG | 0.555472 | tig0015877:+22117 | None:intergenic |
| CAAGAAAGAACACCATTAGT+GGG | 0.557253 | tig0015877:-22191 | Msa1356870:CDS |
| GCTTTGGCTCTTATTCAACA+TGG | 0.557417 | tig0015877:-24126 | Msa1356870:CDS |
| GGTATTGACGTATTTACTAG+TGG | 0.557727 | tig0015877:-24148 | Msa1356870:CDS |
| GTTAACGTTGGTGCTAACAT+TGG | 0.571857 | tig0015877:-24090 | Msa1356870:CDS |
| GCAACTCATGTCTCAAGGGA+TGG | 0.578614 | tig0015877:-20964 | Msa1356870:CDS |
| TTTCAACAAGCTTCTCAACA+TGG | 0.579027 | tig0015877:-23934 | Msa1356870:CDS |
| TTTGTAGTATTGCTTGACAA+CGG | 0.582400 | tig0015877:+22492 | None:intergenic |
| GTTTAAATGTAGGAAGAACA+TGG | 0.584151 | tig0015877:-23912 | Msa1356870:CDS |
| GTAGAATTGGGTTAGTGAGA+TGG | 0.586662 | tig0015877:-21751 | Msa1356870:intron |
| TCTGGCAACTCATGTCTCAA+GGG | 0.589102 | tig0015877:-20968 | Msa1356870:CDS |
| ATAGAGTTTACCATTGATCA+GGG | 0.591775 | tig0015877:+21553 | None:intergenic |
| TTGATGACTTGGGAAGTTGA+AGG | 0.592520 | tig0015877:+20900 | None:intergenic |
| AATGGAGGCTCATGTGCAGG+TGG | 0.595180 | tig0015877:-20996 | Msa1356870:CDS |
| GGGATGGATAACATGGGAGA+TGG | 0.598086 | tig0015877:-20948 | Msa1356870:CDS |
| TTCCTATTGGTTAACAACCA+TGG | 0.601527 | tig0015877:-23995 | Msa1356870:CDS |
| ATGGTGGCAAAATCGATTTG+AGG | 0.606196 | tig0015877:+21585 | None:intergenic |
| AGATTGTTGTTTGATGACTT+GGG | 0.616691 | tig0015877:+20890 | None:intergenic |
| TTTAAATGTAGGAAGAACAT+GGG | 0.625835 | tig0015877:-23911 | Msa1356870:CDS |
| ACATGGGCTTTCAATGATGG+AGG | 0.627627 | tig0015877:-23895 | Msa1356870:CDS |
| GTGCAATGGGCAAGAGAACG+TGG | 0.641213 | tig0015877:-22553 | Msa1356870:CDS |
| TCTACAAGTGCTATCAATGG+AGG | 0.642272 | tig0015877:-21011 | Msa1356870:CDS |
| TGTAGTATTGCTTGACAACG+GGG | 0.642300 | tig0015877:+22494 | None:intergenic |
| ATCAGGGTATATATGAATGG+TGG | 0.649799 | tig0015877:+21569 | None:intergenic |
| ATGGAGGCTCATGTGCAGGT+GGG | 0.651054 | tig0015877:-20995 | Msa1356870:CDS |
| AATCCCAATACTGCTCAAGT+CGG | 0.664639 | tig0015877:-21636 | Msa1356870:CDS |
| GCTATCAATAGATTTGACGT+AGG | 0.668645 | tig0015877:+21725 | None:intergenic |
| TGTAGATGGATCAGATGCCA+TGG | 0.688916 | tig0015877:+23978 | None:intergenic |
| AAGAAAGAACACCATTAGTG+GGG | 0.712436 | tig0015877:-22190 | Msa1356870:CDS |
| TCTCAAGGGATGGATAACAT+GGG | 0.717015 | tig0015877:-20954 | Msa1356870:CDS |
| AACACCCAAAGAGTTAACGT+TGG | 0.732219 | tig0015877:-24102 | Msa1356870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTTTTTTATTTGAC+TGG | - | tig0015877:21176-21195 | Msa1356870:CDS | 10.0% |
| !!! | TTCTTTTTTTTTTTTTGAAT+CGG | + | tig0015877:21349-21368 | None:intergenic | 10.0% |
| !!! | ATTAATTTAATATTTTTGAG+AGG | + | tig0015877:21691-21710 | None:intergenic | 10.0% |
| !! | AGAAAAAATTATGTTAAAAA+AGG | + | tig0015877:21981-22000 | None:intergenic | 10.0% |
| !! | TAAATTAATATGAAAATAGA+CGG | + | tig0015877:22128-22147 | None:intergenic | 10.0% |
| !! | TATAAGTAAACATTATTTAA+TGG | + | tig0015877:22189-22208 | None:intergenic | 10.0% |
| !! | AGAAATTACATTAAATTAAT+TGG | - | tig0015877:23743-23762 | Msa1356870:intron | 10.0% |
| !! | GAAATTACATTAAATTAATT+GGG | - | tig0015877:23744-23763 | Msa1356870:intron | 10.0% |
| !!! | TTATTATTTTTTTCCCTTTT+TGG | - | tig0015877:21372-21391 | Msa1356870:intron | 15.0% |
| !! | TTAAAACATTAATCTATGTT+TGG | - | tig0015877:21528-21547 | Msa1356870:intron | 15.0% |
| !! | TAAAACATTAATCTATGTTT+GGG | - | tig0015877:21529-21548 | Msa1356870:intron | 15.0% |
| !!! | TTAGTTCTATAAATTTGTAT+TGG | - | tig0015877:22557-22576 | Msa1356870:CDS | 15.0% |
| !! | TGATTAATTTATTGTAGAAT+TGG | - | tig0015877:23217-23236 | Msa1356870:intron | 15.0% |
| !! | GATTAATTTATTGTAGAATT+GGG | - | tig0015877:23218-23237 | Msa1356870:intron | 15.0% |
| !!! | TTTCAAAAATTTAAAGCTTG+AGG | - | tig0015877:21495-21514 | Msa1356870:intron | 20.0% |
| !! | ATTAGAAGTAAAACATATAG+TGG | + | tig0015877:22164-22183 | None:intergenic | 20.0% |
| !! | ATACTACAAAAATCATGTTA+AGG | - | tig0015877:22502-22521 | Msa1356870:CDS | 20.0% |
| !!! | TTTAATTTTGTTGTATTTCC+AGG | + | tig0015877:22595-22614 | None:intergenic | 20.0% |
| !! | ATACAACAAAATTAAACCAA+TGG | - | tig0015877:22599-22618 | Msa1356870:CDS | 20.0% |
| !! | TACAACAAAATTAAACCAAT+GGG | - | tig0015877:22600-22619 | Msa1356870:CDS | 20.0% |
| !! | AAGTAAATAAGTGAGAAATT+TGG | + | tig0015877:23052-23071 | None:intergenic | 20.0% |
| !! | AAAAAATATTAAAAGAGTCG+AGG | + | tig0015877:23479-23498 | None:intergenic | 20.0% |
| !!! | TTTATCAACAAATGCATTTT+GGG | + | tig0015877:23809-23828 | None:intergenic | 20.0% |
| !!! | ATTTATCAACAAATGCATTT+TGG | + | tig0015877:23810-23829 | None:intergenic | 20.0% |
| !!! | AAAATGCATTTGTTGATAAA+TGG | - | tig0015877:23809-23828 | Msa1356870:intron | 20.0% |
| !! | GAACACATTTTATTCTCAAT+GGG | - | tig0015877:20937-20956 | Msa1356870:CDS | 25.0% |
| ! | TTTAAATGTAGGAAGAACAT+GGG | - | tig0015877:21070-21089 | Msa1356870:CDS | 25.0% |
| !! | GTATGATGAAAATGTTTTCA+AGG | - | tig0015877:21139-21158 | Msa1356870:CDS | 25.0% |
| ! | TGGAAAAAAAAAGATACAAG+GGG | + | tig0015877:21276-21295 | None:intergenic | 25.0% |
| ! | GTGGAAAAAAAAAGATACAA+GGG | + | tig0015877:21277-21296 | None:intergenic | 25.0% |
| ! | AGATACATTCATGAAATGTT+AGG | + | tig0015877:21424-21443 | None:intergenic | 25.0% |
| !!! | AATTTTTGAAACACCATTTC+TGG | + | tig0015877:21486-21505 | None:intergenic | 25.0% |
| !! | TCATTTTCTATTTTACTCAC+TGG | - | tig0015877:22270-22289 | Msa1356870:intron | 25.0% |
| ! | GACTATTTACATTTGTACAT+AGG | - | tig0015877:22307-22326 | Msa1356870:intron | 25.0% |
| !! | GTGAATAATTGGAATGATTT+TGG | - | tig0015877:22389-22408 | Msa1356870:intron | 25.0% |
| !! | AATAATTGGAATGATTTTGG+AGG | - | tig0015877:22392-22411 | Msa1356870:intron | 25.0% |
| ! | CAAAAACAAATATGTGCAAT+GGG | - | tig0015877:22415-22434 | Msa1356870:intron | 25.0% |
| ! | TTGTACAAAATAATTCCCAT+TGG | + | tig0015877:22618-22637 | None:intergenic | 25.0% |
| !! | CAAAAACACATTTAGTTTAC+TGG | - | tig0015877:22663-22682 | Msa1356870:intron | 25.0% |
| ! | TGTATGTAATCCAAAAAGTT+TGG | - | tig0015877:22723-22742 | Msa1356870:intron | 25.0% |
| !! | AATAATGCTACCAAACTTTT+TGG | + | tig0015877:22736-22755 | None:intergenic | 25.0% |
| ! | TTTCATTCATGATTGATTAC+AGG | - | tig0015877:22758-22777 | Msa1356870:intron | 25.0% |
| !! | TTGATTTTCCTGAATCATTT+AGG | + | tig0015877:22875-22894 | None:intergenic | 25.0% |
| ! | CTTCATTTCAATGTAATGAA+TGG | + | tig0015877:23170-23189 | None:intergenic | 25.0% |
| !! | CTTGATTTTTCTGTAAACAT+TGG | - | tig0015877:23560-23579 | Msa1356870:intron | 25.0% |
| ! | TATGTCTATGTTGTGTAATT+CGG | - | tig0015877:23682-23701 | Msa1356870:intron | 25.0% |
| ! | CATTAAATTAATTGGGATTG+TGG | - | tig0015877:23751-23770 | Msa1356870:intron | 25.0% |
| ! | TGGATATAGCATAGATAAAA+GGG | - | tig0015877:23915-23934 | Msa1356870:CDS | 25.0% |
| ! | AACTAAAAAGGAAAATGGAT+AGG | + | tig0015877:24166-24185 | None:intergenic | 25.0% |
| ! | GGAACACATTTTATTCTCAA+TGG | - | tig0015877:20936-20955 | Msa1356870:CDS | 30.0% |
| ! | TGAATGGATTCAATTCCTAT+TGG | - | tig0015877:20973-20992 | Msa1356870:CDS | 30.0% |
| TCTCAACATGGTTTAAATGT+AGG | - | tig0015877:21059-21078 | Msa1356870:CDS | 30.0% | |
| GTTTAAATGTAGGAAGAACA+TGG | - | tig0015877:21069-21088 | Msa1356870:CDS | 30.0% | |
| AAAAAGATACAAGGGGAAAT+CGG | + | tig0015877:21269-21288 | None:intergenic | 30.0% | |
| GGTGGAAAAAAAAAGATACA+AGG | + | tig0015877:21278-21297 | None:intergenic | 30.0% | |
| ACCATAAAACTGACCAAAAA+GGG | + | tig0015877:21388-21407 | None:intergenic | 30.0% | |
| !!! | TTCTGGTGGCTAAATTTTTT+TGG | + | tig0015877:21469-21488 | None:intergenic | 30.0% |
| AAAAATTTAGCCACCAGAAA+TGG | - | tig0015877:21470-21489 | Msa1356870:intron | 30.0% | |
| TGACACATAGAGCTAAAAAA+AGG | + | tig0015877:21718-21737 | None:intergenic | 30.0% | |
| TTACATTTGTACATAGGCAT+TGG | - | tig0015877:22313-22332 | Msa1356870:intron | 30.0% | |
| ! | ATTGGATTTTGTGATATCAG+AGG | - | tig0015877:22331-22350 | Msa1356870:intron | 30.0% |
| TACTGAGCTTAGTGAATAAT+TGG | - | tig0015877:22378-22397 | Msa1356870:intron | 30.0% | |
| GCAAAAACAAATATGTGCAA+TGG | - | tig0015877:22414-22433 | Msa1356870:intron | 30.0% | |
| TTTGTAGTATTGCTTGACAA+CGG | + | tig0015877:22492-22511 | None:intergenic | 30.0% | |
| !! | TATTGGCAAATTACTTTTCC+TGG | - | tig0015877:22574-22593 | Msa1356870:CDS | 30.0% |
| TGATTCAGGAAAATCAATTC+AGG | - | tig0015877:22878-22897 | Msa1356870:intron | 30.0% | |
| CAAAAAGGAAGGAAGTTAAA+AGG | + | tig0015877:22905-22924 | None:intergenic | 30.0% | |
| !!! | CGGTGTCTTATTTGTTTTAA+GGG | + | tig0015877:23002-23021 | None:intergenic | 30.0% |
| !!! | ACGGTGTCTTATTTGTTTTA+AGG | + | tig0015877:23003-23022 | None:intergenic | 30.0% |
| CATTTCAATGTAATGAATGG+TGG | + | tig0015877:23167-23186 | None:intergenic | 30.0% | |
| ! | TATTGATAGCAATCATTTGC+TGG | - | tig0015877:23269-23288 | Msa1356870:intron | 30.0% |
| GATTTGAGGAATTTGATTGT+TGG | + | tig0015877:23385-23404 | None:intergenic | 30.0% | |
| TTGATCAGGGTATATATGAA+TGG | + | tig0015877:23418-23437 | None:intergenic | 30.0% | |
| TTCATATATACCCTGATCAA+TGG | - | tig0015877:23418-23437 | Msa1356870:intron | 30.0% | |
| ATAGAGTTTACCATTGATCA+GGG | + | tig0015877:23431-23450 | None:intergenic | 30.0% | |
| TATAGAGTTTACCATTGATC+AGG | + | tig0015877:23432-23451 | None:intergenic | 30.0% | |
| !!! | CGTGTATTTTTTGTGAACAT+TGG | - | tig0015877:23518-23537 | Msa1356870:intron | 30.0% |
| ! | AGTGTTTTGTGAAACATTGA+TGG | - | tig0015877:23713-23732 | Msa1356870:intron | 30.0% |
| ! | GCATTTGTTGATAAATGGAT+AGG | - | tig0015877:23814-23833 | Msa1356870:intron | 30.0% |
| ! | CAGGATTCAAATACTGTTTT+AGG | - | tig0015877:23847-23866 | Msa1356870:CDS | 30.0% |
| CCAAACTCTGCTATAATTAT+TGG | + | tig0015877:23877-23896 | None:intergenic | 30.0% | |
| CCAATAATTATAGCAGAGTT+TGG | - | tig0015877:23874-23893 | Msa1356870:CDS | 30.0% | |
| CTGGATATAGCATAGATAAA+AGG | - | tig0015877:23914-23933 | Msa1356870:CDS | 30.0% | |
| ! | ATTGATAGCACTTGTAGATA+TGG | + | tig0015877:23968-23987 | None:intergenic | 30.0% |
| ATATCTACAAGTGCTATCAA+TGG | - | tig0015877:23967-23986 | Msa1356870:CDS | 30.0% | |
| !! | AGATTGTTGTTTGATGACTT+GGG | + | tig0015877:24094-24113 | None:intergenic | 30.0% |
| !! | TAGATTGTTGTTTGATGACT+TGG | + | tig0015877:24095-24114 | None:intergenic | 30.0% |
| !! | GGTATTGACGTATTTACTAG+TGG | - | tig0015877:20833-20852 | Msa1356870:three_prime_UTR | 35.0% |
| !! | CTTTGGCTCTTATTCAACAT+GGG | - | tig0015877:20856-20875 | Msa1356870:exon | 35.0% |
| ! | TTCCTATTGGTTAACAACCA+TGG | - | tig0015877:20986-21005 | Msa1356870:CDS | 35.0% |
| TGATCCATCTACAAGTTCTA+AGG | - | tig0015877:21013-21032 | Msa1356870:CDS | 35.0% | |
| !! | TTGAGAAGCTTGTTGAAAAG+TGG | + | tig0015877:21045-21064 | None:intergenic | 35.0% |
| TTTCAACAAGCTTCTCAACA+TGG | - | tig0015877:21047-21066 | Msa1356870:CDS | 35.0% | |
| ! | ACATTTTCATCATACGAACC+AGG | + | tig0015877:21134-21153 | None:intergenic | 35.0% |
| ATTCTGAATTTGCGCGTATT+AGG | + | tig0015877:21208-21227 | None:intergenic | 35.0% | |
| !! | TCCCTTTTTGGTCAGTTTTA+TGG | - | tig0015877:21384-21403 | Msa1356870:intron | 35.0% |
| CACCATAAAACTGACCAAAA+AGG | + | tig0015877:21389-21408 | None:intergenic | 35.0% | |
| !! | CTTTTTGGTCAGTTTTATGG+TGG | - | tig0015877:21387-21406 | Msa1356870:intron | 35.0% |
| !! | TGGACACGTTCTTTTTCATT+AGG | + | tig0015877:21449-21468 | None:intergenic | 35.0% |
| !!! | TTTTGAAACACCATTTCTGG+TGG | + | tig0015877:21483-21502 | None:intergenic | 35.0% |
| ATATCAGAGGCAAGCAAATA+TGG | - | tig0015877:22344-22363 | Msa1356870:intron | 35.0% | |
| TTGTAGTATTGCTTGACAAC+GGG | + | tig0015877:22491-22510 | None:intergenic | 35.0% | |
| ACAAGAAAGAACACCATTAG+TGG | - | tig0015877:22789-22808 | Msa1356870:intron | 35.0% | |
| CAAGAAAGAACACCATTAGT+GGG | - | tig0015877:22790-22809 | Msa1356870:intron | 35.0% | |
| AAGAAAGAACACCATTAGTG+GGG | - | tig0015877:22791-22810 | Msa1356870:intron | 35.0% | |
| !!! | ATGACCCAACTATTTTTGCT+TGG | - | tig0015877:22826-22845 | Msa1356870:intron | 35.0% |
| !!! | TGACCCAACTATTTTTGCTT+GGG | - | tig0015877:22827-22846 | Msa1356870:intron | 35.0% |
| ACTCTTTCCTCTACATACTA+CGG | + | tig0015877:23022-23041 | None:intergenic | 35.0% | |
| GCTATCAATAGATTTGACGT+AGG | + | tig0015877:23259-23278 | None:intergenic | 35.0% | |
| ! | AGCAATCATTTGCTGGAAAT+AGG | - | tig0015877:23276-23295 | Msa1356870:intron | 35.0% |
| ATAGGACTTGAAGGATTCTA+TGG | - | tig0015877:23294-23313 | Msa1356870:intron | 35.0% | |
| ! | GGATTGAATTGCTTCTTTTG+TGG | + | tig0015877:23330-23349 | None:intergenic | 35.0% |
| ATCAGGGTATATATGAATGG+TGG | + | tig0015877:23415-23434 | None:intergenic | 35.0% | |
| !! | TTTTGTGAAACATTGATGGC+AGG | - | tig0015877:23717-23736 | Msa1356870:intron | 35.0% |
| GACGTATTTACTAGTGGCTT+TGG | - | tig0015877:20839-20858 | Msa1356870:three_prime_UTR | 40.0% | |
| !! | GCTTTGGCTCTTATTCAACA+TGG | - | tig0015877:20855-20874 | Msa1356870:exon | 40.0% |
| AACACCCAAAGAGTTAACGT+TGG | - | tig0015877:20879-20898 | Msa1356870:CDS | 40.0% | |
| AGCACCAACGTTAACTCTTT+GGG | + | tig0015877:20886-20905 | None:intergenic | 40.0% | |
| TAGCACCAACGTTAACTCTT+TGG | + | tig0015877:20887-20906 | None:intergenic | 40.0% | |
| !! | GTTAACGTTGGTGCTAACAT+TGG | - | tig0015877:20891-20910 | Msa1356870:CDS | 40.0% |
| ! | GCTGGTTTCGTTCAAAGAAA+AGG | - | tig0015877:20915-20934 | Msa1356870:CDS | 40.0% |
| TGCCATGGTTGTTAACCAAT+AGG | + | tig0015877:20991-21010 | None:intergenic | 40.0% | |
| GTGACCTTAGAACTTGTAGA+TGG | + | tig0015877:21020-21039 | None:intergenic | 40.0% | |
| AGAACATGGGCTTTCAATGA+TGG | - | tig0015877:21083-21102 | Msa1356870:CDS | 40.0% | |
| AAAGCTCTTCAAATCTCTCC+TGG | - | tig0015877:21113-21132 | Msa1356870:CDS | 40.0% | |
| AAATCGGTTGCCACAAGAAA+CGG | + | tig0015877:21253-21272 | None:intergenic | 40.0% | |
| TGTAGTATTGCTTGACAACG+GGG | + | tig0015877:22490-22509 | None:intergenic | 40.0% | |
| CTTGTATAACACCCCACTAA+TGG | + | tig0015877:22805-22824 | None:intergenic | 40.0% | |
| ! | CATTAGTGGGGTGTTATACA+AGG | - | tig0015877:22803-22822 | Msa1356870:intron | 40.0% |
| GCTCCCAAGCAAAAATAGTT+GGG | + | tig0015877:22833-22852 | None:intergenic | 40.0% | |
| AGCTCCCAAGCAAAAATAGT+TGG | + | tig0015877:22834-22853 | None:intergenic | 40.0% | |
| CCTGAATCATTTAGGTAACG+AGG | + | tig0015877:22867-22886 | None:intergenic | 40.0% | |
| CCTCGTTACCTAAATGATTC+AGG | - | tig0015877:22864-22883 | Msa1356870:intron | 40.0% | |
| ACTAAGTGGAGCAAGCAAAA+AGG | + | tig0015877:22920-22939 | None:intergenic | 40.0% | |
| TAAGACACCGTAGTATGTAG+AGG | - | tig0015877:23012-23031 | Msa1356870:intron | 40.0% | |
| !! | GTAGAATTGGGTTAGTGAGA+TGG | - | tig0015877:23230-23249 | Msa1356870:intron | 40.0% |
| TTGCTGGAAATAGGACTTGA+AGG | - | tig0015877:23285-23304 | Msa1356870:intron | 40.0% | |
| AATCCCAATACTGCTCAAGT+CGG | - | tig0015877:23345-23364 | Msa1356870:intron | 40.0% | |
| !! | ATGGTGGCAAAATCGATTTG+AGG | + | tig0015877:23399-23418 | None:intergenic | 40.0% |
| ! | ATGGATAGGAGCACATATTC+AGG | - | tig0015877:23828-23847 | Msa1356870:intron | 40.0% |
| TCTACAAGTGCTATCAATGG+AGG | - | tig0015877:23970-23989 | Msa1356870:CDS | 40.0% | |
| TCTCAAGGGATGGATAACAT+GGG | - | tig0015877:24027-24046 | Msa1356870:CDS | 40.0% | |
| ! | TTGATGACTTGGGAAGTTGA+AGG | + | tig0015877:24084-24103 | None:intergenic | 40.0% |
| TGTAGATGGATCAGATGCCA+TGG | + | tig0015877:21006-21025 | None:intergenic | 45.0% | |
| ACATGGGCTTTCAATGATGG+AGG | - | tig0015877:21086-21105 | Msa1356870:CDS | 45.0% | |
| !!! | TTTTTCGAGCCCGTTTCTTG+TGG | - | tig0015877:21240-21259 | Msa1356870:intron | 45.0% |
| AATCGGTTGCCACAAGAAAC+GGG | + | tig0015877:21252-21271 | None:intergenic | 45.0% | |
| AGTGGAGCAAGCAAAAAGGA+AGG | + | tig0015877:22916-22935 | None:intergenic | 45.0% | |
| CGCACACAAGCAAAACTAAG+TGG | + | tig0015877:22934-22953 | None:intergenic | 45.0% | |
| ! | GTTCCGACTTGAGCAGTATT+GGG | + | tig0015877:23351-23370 | None:intergenic | 45.0% |
| ! | AGTTCCGACTTGAGCAGTAT+TGG | + | tig0015877:23352-23371 | None:intergenic | 45.0% |
| GGAAAGTCTTCAAAGTCAGC+TGG | - | tig0015877:23895-23914 | Msa1356870:CDS | 45.0% | |
| TTCTGGCAACTCATGTCTCA+AGG | - | tig0015877:24012-24031 | Msa1356870:CDS | 45.0% | |
| TCTGGCAACTCATGTCTCAA+GGG | - | tig0015877:24013-24032 | Msa1356870:CDS | 45.0% | |
| GTCTCAAGGGATGGATAACA+TGG | - | tig0015877:24026-24045 | Msa1356870:CDS | 45.0% | |
| !!! | GTTAAAAATAATTTTATATA+CGG | - | tig0015877:22689-22708 | Msa1356870:intron | 5.0% |
| !! | GTTGGTGCTAACATTGGTGC+TGG | - | tig0015877:20897-20916 | Msa1356870:CDS | 50.0% |
| GGGAAGACGCACTATGTGAA+TGG | - | tig0015877:20957-20976 | Msa1356870:CDS | 50.0% | |
| ATTAACCACAAGCCTGTGCG+AGG | + | tig0015877:21317-21336 | None:intergenic | 50.0% | |
| ATTGGGATTGTGGCTGATGC+AGG | - | tig0015877:23761-23780 | Msa1356870:intron | 50.0% | |
| TGTGGCTGATGCAGGATACA+AGG | - | tig0015877:23769-23788 | Msa1356870:intron | 50.0% | |
| ATCAATGGAGGCTCATGTGC+AGG | - | tig0015877:23982-24001 | Msa1356870:CDS | 50.0% | |
| ! | CATGTGCAGGTGGGATTTTC+TGG | - | tig0015877:23995-24014 | Msa1356870:CDS | 50.0% |
| GCAACTCATGTCTCAAGGGA+TGG | - | tig0015877:24017-24036 | Msa1356870:CDS | 50.0% | |
| GGGATGGATAACATGGGAGA+TGG | - | tig0015877:24033-24052 | Msa1356870:CDS | 50.0% | |
| CGAGGCGCACTAATAAGCTC+GGG | + | tig0015877:21299-21318 | None:intergenic | 55.0% | |
| GCGAGGCGCACTAATAAGCT+CGG | + | tig0015877:21300-21319 | None:intergenic | 55.0% | |
| CTTATTAGTGCGCCTCGCAC+AGG | - | tig0015877:21302-21321 | Msa1356870:intron | 55.0% | |
| GTGCAATGGGCAAGAGAACG+TGG | - | tig0015877:22428-22447 | Msa1356870:intron | 55.0% | |
| AATGGAGGCTCATGTGCAGG+TGG | - | tig0015877:23985-24004 | Msa1356870:CDS | 55.0% | |
| ATGGAGGCTCATGTGCAGGT+GGG | - | tig0015877:23986-24005 | Msa1356870:CDS | 55.0% | |
| GGCGCACTAATAAGCTCGGG+TGG | + | tig0015877:21296-21315 | None:intergenic | 60.0% | |
| GTGCGCCTCGCACAGGCTTG+TGG | - | tig0015877:21309-21328 | Msa1356870:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0015877 | gene | 20816 | 24187 | 20816 | ID=Msa1356870;Name=Msa1356870 |
| tig0015877 | mRNA | 20816 | 24187 | 20816 | ID=Msa1356870-mRNA-1;Parent=Msa1356870;Name=Msa1356870-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.5|0.4|1|1|1|5|47|407 |
| tig0015877 | exon | 20816 | 21220 | 20816 | ID=Msa1356870-mRNA-1:exon:10201;Parent=Msa1356870-mRNA-1 |
| tig0015877 | exon | 21564 | 21769 | 21564 | ID=Msa1356870-mRNA-1:exon:10200;Parent=Msa1356870-mRNA-1 |
| tig0015877 | exon | 22104 | 22223 | 22104 | ID=Msa1356870-mRNA-1:exon:10199;Parent=Msa1356870-mRNA-1 |
| tig0015877 | exon | 22480 | 22674 | 22480 | ID=Msa1356870-mRNA-1:exon:10198;Parent=Msa1356870-mRNA-1 |
| tig0015877 | exon | 23843 | 24187 | 23843 | ID=Msa1356870-mRNA-1:exon:10197;Parent=Msa1356870-mRNA-1 |
| tig0015877 | CDS | 23843 | 24187 | 23843 | ID=Msa1356870-mRNA-1:cds;Parent=Msa1356870-mRNA-1 |
| tig0015877 | CDS | 22480 | 22674 | 22480 | ID=Msa1356870-mRNA-1:cds;Parent=Msa1356870-mRNA-1 |
| tig0015877 | CDS | 22104 | 22223 | 22104 | ID=Msa1356870-mRNA-1:cds;Parent=Msa1356870-mRNA-1 |
| tig0015877 | CDS | 21564 | 21769 | 21564 | ID=Msa1356870-mRNA-1:cds;Parent=Msa1356870-mRNA-1 |
| tig0015877 | CDS | 20863 | 21220 | 20863 | ID=Msa1356870-mRNA-1:cds;Parent=Msa1356870-mRNA-1 |
| tig0015877 | three_prime_UTR | 20816 | 20862 | 20816 | ID=Msa1356870-mRNA-1:three_prime_utr;Parent=Msa1356870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
