Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513350 | XP_003591288.1 | 92.804 | 403 | 26 | 1 | 1 | 403 | 1 | 400 | 0.0 | 776 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513350 | sp|Q8L5J1|MAN4_SOLLC | 59.838 | 371 | 144 | 3 | 32 | 401 | 32 | 398 | 6.65e-167 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513350 | G7IBN8 | 92.804 | 403 | 26 | 1 | 1 | 403 | 1 | 400 | 0.0 | 776 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0251240 | Msa0513350 | 0.829176 | 5.959032e-55 | -8.615850e-47 |
| Msa0513350 | Msa0531430 | 0.805783 | 1.130030e-49 | -8.615850e-47 |
| Msa0513350 | Msa0534590 | 0.806610 | 7.567773e-50 | -8.615850e-47 |
| Msa0513350 | Msa0666030 | 0.807867 | 4.097329e-50 | -8.615850e-47 |
| Msa0513350 | Msa1356870 | 0.862309 | 5.550356e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513350 | MtrunA17_Chr1g0193531 | 92.804 | 403 | 26 | 1 | 1 | 403 | 1 | 400 | 0.0 | 776 |
| Msa0513350 | MtrunA17_Chr1g0193601 | 82.382 | 403 | 70 | 1 | 1 | 402 | 1 | 403 | 0.0 | 696 |
| Msa0513350 | MtrunA17_Chr1g0193611 | 81.390 | 403 | 74 | 1 | 1 | 402 | 1 | 403 | 0.0 | 688 |
| Msa0513350 | MtrunA17_Chr1g0193551 | 79.506 | 405 | 79 | 2 | 1 | 402 | 1 | 404 | 0.0 | 681 |
| Msa0513350 | MtrunA17_Chr1g0193541 | 72.772 | 404 | 73 | 4 | 1 | 402 | 1 | 369 | 0.0 | 596 |
| Msa0513350 | MtrunA17_Chr7g0271511 | 68.930 | 383 | 113 | 4 | 21 | 402 | 52 | 429 | 0.0 | 562 |
| Msa0513350 | MtrunA17_Chr3g0141751 | 58.838 | 396 | 153 | 5 | 11 | 403 | 8 | 396 | 1.23e-171 | 486 |
| Msa0513350 | MtrunA17_Chr5g0404601 | 56.533 | 398 | 168 | 3 | 11 | 403 | 7 | 404 | 1.07e-168 | 479 |
| Msa0513350 | MtrunA17_Chr4g0020521 | 55.112 | 401 | 174 | 3 | 3 | 402 | 9 | 404 | 1.17e-164 | 468 |
| Msa0513350 | MtrunA17_Chr7g0245051 | 52.561 | 371 | 173 | 2 | 32 | 399 | 59 | 429 | 6.80e-149 | 429 |
| Msa0513350 | MtrunA17_Chr8g0334501 | 53.784 | 370 | 168 | 2 | 33 | 399 | 63 | 432 | 1.76e-148 | 429 |
| Msa0513350 | MtrunA17_Chr7g0245101 | 52.291 | 371 | 174 | 2 | 32 | 399 | 60 | 430 | 3.05e-147 | 426 |
| Msa0513350 | MtrunA17_Chr2g0324441 | 43.684 | 380 | 208 | 4 | 29 | 402 | 37 | 416 | 3.93e-120 | 355 |
| Msa0513350 | MtrunA17_Chr4g0040121 | 41.995 | 381 | 216 | 3 | 28 | 403 | 35 | 415 | 7.31e-119 | 352 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513350 | AT5G66460.1 | 56.296 | 405 | 168 | 4 | 4 | 403 | 2 | 402 | 1.72e-161 | 461 |
| Msa0513350 | AT1G02310.1 | 56.298 | 389 | 156 | 7 | 22 | 402 | 19 | 401 | 4.91e-160 | 456 |
| Msa0513350 | AT1G02310.2 | 56.298 | 389 | 156 | 7 | 22 | 402 | 39 | 421 | 6.82e-160 | 457 |
| Msa0513350 | AT3G10890.1 | 49.373 | 399 | 195 | 4 | 11 | 402 | 6 | 404 | 1.26e-147 | 425 |
| Msa0513350 | AT5G01930.1 | 48.426 | 413 | 199 | 5 | 1 | 399 | 5 | 417 | 5.69e-145 | 419 |
| Msa0513350 | AT3G10900.1 | 49.118 | 397 | 190 | 7 | 11 | 398 | 6 | 399 | 4.51e-141 | 408 |
| Msa0513350 | AT2G20680.1 | 43.501 | 377 | 209 | 3 | 29 | 401 | 39 | 415 | 6.66e-122 | 360 |
| Msa0513350 | AT4G28320.1 | 43.467 | 375 | 208 | 3 | 31 | 401 | 40 | 414 | 5.85e-119 | 353 |
| Msa0513350 | AT3G30540.1 | 43.478 | 345 | 147 | 7 | 11 | 347 | 6 | 310 | 9.02e-98 | 295 |
Find 76 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAACTCTGCTATAATTAT+TGG | 0.086339 | 3_4:-63605565 | None:intergenic |
| ATTTATCAACAAATGCATTT+TGG | 0.134055 | 3_4:-63605498 | None:intergenic |
| AGGCATGGGGTTTCAAATTT+TGG | 0.144593 | 3_4:+63603008 | None:intergenic |
| GTGAATAATTGGAATGATTT+TGG | 0.164849 | 3_4:+63604012 | Msa0513350:CDS |
| AAAATGCATTTGTTGATAAA+TGG | 0.170917 | 3_4:+63605500 | Msa0513350:CDS |
| TACTGAGCTTGGTGAATAAT+TGG | 0.184083 | 3_4:+63604001 | Msa0513350:CDS |
| GCTTGGTTCCATAACTAAAA+AGG | 0.253539 | 3_4:-63605866 | None:intergenic |
| CTGGATATAGCATAGATAAA+AGG | 0.258107 | 3_4:+63605605 | Msa0513350:CDS |
| CCAATAATTATAGCAGAGTT+TGG | 0.292777 | 3_4:+63605565 | Msa0513350:CDS |
| AATCCCAATACTGCTCAAAT+TGG | 0.298243 | 3_4:+63605042 | Msa0513350:CDS |
| ATATCAGAGGCAAGCAAATA+TGG | 0.306914 | 3_4:+63603967 | Msa0513350:CDS |
| CCTCGTTACGTAAATGATTC+AGG | 0.325837 | 3_4:+63604561 | Msa0513350:CDS |
| GACGTATTTCCTAGTGGCTT+TGG | 0.339896 | 3_4:+63603035 | Msa0513350:CDS |
| TGAATGGATTCAATTCCTTT+TGG | 0.344122 | 3_4:+63603157 | Msa0513350:CDS |
| ATGGATAGGAGCACATATTC+AGG | 0.347244 | 3_4:+63605519 | Msa0513350:CDS |
| GTTCCAATTTGAGCAGTATT+GGG | 0.354473 | 3_4:-63605045 | None:intergenic |
| TATTGATAGCAATCATTTGC+TGG | 0.358557 | 3_4:+63604966 | Msa0513350:CDS |
| TATAGAGTTTACCATTGATC+AGG | 0.378847 | 3_4:-63605126 | None:intergenic |
| AGCATCAACGTTAACACTTT+GGG | 0.380222 | 3_4:-63603079 | None:intergenic |
| AGTTCCAATTTGAGCAGTAT+TGG | 0.381336 | 3_4:-63605046 | None:intergenic |
| ATAGGACTTGAAGGATTCTA+TGG | 0.390308 | 3_4:+63604991 | Msa0513350:CDS |
| ATTGATAGCACTTGTAGATA+TGG | 0.392793 | 3_4:-63605656 | None:intergenic |
| TTGCTGGAAATAGGACTTGA+AGG | 0.402685 | 3_4:+63604982 | Msa0513350:CDS |
| AGCAATCATTTGCTGGAAAT+AGG | 0.402917 | 3_4:+63604973 | Msa0513350:CDS |
| TCTCAACATGGTTTAAATGT+AGG | 0.415757 | 3_4:+63603243 | Msa0513350:CDS |
| TTGTAGTATTGCTTAACAAC+AGG | 0.424809 | 3_4:-63604111 | None:intergenic |
| TGATCCATCTACAAGTTCTA+AGG | 0.431117 | 3_4:+63603197 | Msa0513350:CDS |
| CTTGTATAACACTCCACTAA+TGG | 0.435712 | 3_4:-63604499 | None:intergenic |
| TGATTCAGGAAAATCAATTC+AGG | 0.436017 | 3_4:+63604575 | Msa0513350:CDS |
| CAGCATCAACGTTAACACTT+TGG | 0.443721 | 3_4:-63603080 | None:intergenic |
| AAAGCTCTTCAAATCTCTCC+TGG | 0.447491 | 3_4:+63603297 | Msa0513350:CDS |
| TAGATTGTTGTTTGATGACT+TGG | 0.450706 | 3_4:-63605783 | None:intergenic |
| GATTTGAGGAATTTGATTGT+TGG | 0.453318 | 3_4:-63605079 | None:intergenic |
| TGGATATAGCATAGATAAAA+GGG | 0.465855 | 3_4:+63605606 | Msa0513350:CDS |
| GCTGGTTTCGTTCAAAGAAA+AGG | 0.466494 | 3_4:+63603099 | Msa0513350:CDS |
| TGCCATTGTCGTTAACCAAA+AGG | 0.473296 | 3_4:-63603172 | None:intergenic |
| AGAACATGGGCTTTCAATGA+TGG | 0.480030 | 3_4:+63603267 | Msa0513350:CDS |
| GTGACCTTAGAACTTGTAGA+TGG | 0.484931 | 3_4:-63603201 | None:intergenic |
| CAAAGTGTTAACGTTGATGC+TGG | 0.486316 | 3_4:+63603081 | Msa0513350:CDS |
| TTGAGAAGCTTGTTGAAAAG+TGG | 0.491882 | 3_4:-63603226 | None:intergenic |
| GGAAAGTCTTCAAAGTCAGC+TGG | 0.501146 | 3_4:+63605586 | Msa0513350:CDS |
| TTCTGGCAACTCATGTCTCA+AGG | 0.508483 | 3_4:+63605703 | Msa0513350:CDS |
| TTCATATATACCCTGATCAA+TGG | 0.511468 | 3_4:+63605115 | Msa0513350:CDS |
| GTCTCAAGGGATGGATAACA+TGG | 0.513177 | 3_4:+63605717 | Msa0513350:CDS |
| ATCAATGGAGGCTCATGTGC+AGG | 0.526032 | 3_4:+63605673 | Msa0513350:CDS |
| GGAAAGACACACTATGTGAA+TGG | 0.527971 | 3_4:+63603141 | Msa0513350:CDS |
| ATATCTACAAGTGCTATCAA+TGG | 0.528493 | 3_4:+63605658 | Msa0513350:CDS |
| CCTGAATCATTTACGTAACG+AGG | 0.530723 | 3_4:-63604561 | None:intergenic |
| TTGATCAGGGTATATATGAA+TGG | 0.530724 | 3_4:-63605112 | None:intergenic |
| TGTGGCTGATGCAGGATACA+AGG | 0.532823 | 3_4:+63605460 | Msa0513350:intron |
| GCATTTGTTGATAAATGGAT+AGG | 0.551352 | 3_4:+63605505 | Msa0513350:CDS |
| CTTTGGCTCTTATTCAACAT+GGG | 0.553677 | 3_4:+63603052 | Msa0513350:CDS |
| GCTTTGGCTCTTATTCAACA+TGG | 0.557417 | 3_4:+63603051 | Msa0513350:CDS |
| GAATAAGAGCCAAAGCCACT+AGG | 0.575914 | 3_4:-63603044 | None:intergenic |
| GCAACTCATGTCTCAAGGGA+TGG | 0.578614 | 3_4:+63605708 | Msa0513350:CDS |
| TTTCAACAAGCTTCTCAACA+TGG | 0.579027 | 3_4:+63603231 | Msa0513350:CDS |
| AGTGAAACTTATACTGAGCT+TGG | 0.581485 | 3_4:+63603990 | Msa0513350:CDS |
| GTTTAAATGTAGGAAGAACA+TGG | 0.584151 | 3_4:+63603253 | Msa0513350:CDS |
| GTAGAATTGGGTTAGTGAGA+TGG | 0.586662 | 3_4:+63604927 | Msa0513350:intron |
| TCTGGCAACTCATGTCTCAA+GGG | 0.589102 | 3_4:+63605704 | Msa0513350:CDS |
| ATAGAGTTTACCATTGATCA+GGG | 0.591775 | 3_4:-63605125 | None:intergenic |
| TTGATGACTTGGGAAGTTGA+AGG | 0.592520 | 3_4:-63605772 | None:intergenic |
| ACATGGGCTTTCAATGATGG+AGG | 0.593872 | 3_4:+63603270 | Msa0513350:CDS |
| CATTAGTGGAGTGTTATACA+AGG | 0.594333 | 3_4:+63604500 | Msa0513350:CDS |
| AATGGAGGCTCATGTGCAGG+TGG | 0.595180 | 3_4:+63605676 | Msa0513350:CDS |
| GGGATGGATAACATGGGAGA+TGG | 0.598086 | 3_4:+63605724 | Msa0513350:CDS |
| ATGGTGGCAAAATCGATTTG+AGG | 0.606196 | 3_4:-63605093 | None:intergenic |
| AGATTGTTGTTTGATGACTT+GGG | 0.616691 | 3_4:-63605782 | None:intergenic |
| GGTATTGACGTATTTCCTAG+TGG | 0.620819 | 3_4:+63603029 | Msa0513350:CDS |
| TTTAAATGTAGGAAGAACAT+GGG | 0.625835 | 3_4:+63603254 | Msa0513350:CDS |
| GTGCAGTGGGCAAGAGAACG+TGG | 0.641213 | 3_4:+63604051 | Msa0513350:CDS |
| TCTACAAGTGCTATCAATGG+AGG | 0.642272 | 3_4:+63605661 | Msa0513350:CDS |
| ATCAGGGTATATATGAATGG+TGG | 0.649799 | 3_4:-63605109 | None:intergenic |
| ATGGAGGCTCATGTGCAGGT+GGG | 0.651054 | 3_4:+63605677 | Msa0513350:CDS |
| GCTATCAATAGATTTGACGT+AGG | 0.668645 | 3_4:-63604953 | None:intergenic |
| TCTCAAGGGATGGATAACAT+GGG | 0.717015 | 3_4:+63605718 | Msa0513350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTATTTTTTATTTGAC+GGG | + | chr3_4:63603456-63603475 | Msa0513350:intron | 10.0% |
| !! | TATAAGTAAACATTATTTAA+TGG | - | chr3_4:63603802-63603821 | None:intergenic | 10.0% |
| !!! | AGTAACTAGTTTTTTTTTTT+TGG | + | chr3_4:63603387-63603406 | Msa0513350:intron | 15.0% |
| !! | TAGAAAAAATTATGTTGAAA+AGG | - | chr3_4:63603591-63603610 | None:intergenic | 15.0% |
| !! | TTGTAAAAAATAATTCACAT+TGG | - | chr3_4:63604315-63604334 | None:intergenic | 15.0% |
| !!! | AGTAAATTAAATGTGTTTTT+GGG | - | chr3_4:63604361-63604380 | None:intergenic | 15.0% |
| !! | TGATTAATTTATTGTAGAAT+TGG | + | chr3_4:63604914-63604933 | Msa0513350:intron | 15.0% |
| !! | GATTAATTTATTGTAGAATT+GGG | + | chr3_4:63604915-63604934 | Msa0513350:intron | 15.0% |
| !! | GAAATTACATAAAATTAATC+TGG | + | chr3_4:63605435-63605454 | Msa0513350:intron | 15.0% |
| !!! | TTATGATGAAAATGTTTTCA+AGG | + | chr3_4:63603323-63603342 | Msa0513350:CDS | 20.0% |
| !!! | TTCAAGGTAATTTTTTTTAG+AGG | + | chr3_4:63603339-63603358 | Msa0513350:intron | 20.0% |
| !! | ATTAGAAGTAAAACATATAG+TGG | - | chr3_4:63603777-63603796 | None:intergenic | 20.0% |
| !! | AAATGATGAAAAACATATAG+TGG | - | chr3_4:63603881-63603900 | None:intergenic | 20.0% |
| !! | ATACTACAAAAATCATGTTA+AGG | + | chr3_4:63604125-63604144 | Msa0513350:CDS | 20.0% |
| !! | TATATTTATAGTGCTAATTC+AGG | - | chr3_4:63604175-63604194 | None:intergenic | 20.0% |
| !! | AATTTACAAAACTCATGTTA+AGG | + | chr3_4:63604208-63604227 | Msa0513350:intron | 20.0% |
| !! | AGTATAGAATTGAAGAATTA+TGG | - | chr3_4:63604236-63604255 | None:intergenic | 20.0% |
| !!! | AAATTTGTATTTACTTTTCC+AGG | + | chr3_4:63604272-63604291 | Msa0513350:intron | 20.0% |
| !!! | CAGTAAATTAAATGTGTTTT+TGG | - | chr3_4:63604362-63604381 | None:intergenic | 20.0% |
| !!! | CAAAAACACATTTAATTTAC+TGG | + | chr3_4:63604360-63604379 | Msa0513350:intron | 20.0% |
| !! | TAAAAAAAAATTAAGAGTCG+AGG | - | chr3_4:63605176-63605195 | None:intergenic | 20.0% |
| !!! | TTTATCAACAAATGCATTTT+GGG | - | chr3_4:63605500-63605519 | None:intergenic | 20.0% |
| !!! | ATTTATCAACAAATGCATTT+TGG | - | chr3_4:63605501-63605520 | None:intergenic | 20.0% |
| !!! | AAAATGCATTTGTTGATAAA+TGG | + | chr3_4:63605500-63605519 | Msa0513350:CDS | 20.0% |
| !!! | GGAACACATTTTATTTTGAA+TGG | + | chr3_4:63603120-63603139 | Msa0513350:CDS | 25.0% |
| ! | TTTAAATGTAGGAAGAACAT+GGG | + | chr3_4:63603254-63603273 | Msa0513350:CDS | 25.0% |
| !! | ATCATTTCTATTTTACTCAC+TGG | + | chr3_4:63603894-63603913 | Msa0513350:intron | 25.0% |
| !! | GTGAATAATTGGAATGATTT+TGG | + | chr3_4:63604012-63604031 | Msa0513350:CDS | 25.0% |
| !! | AATAATTGGAATGATTTTGG+AGG | + | chr3_4:63604015-63604034 | Msa0513350:CDS | 25.0% |
| !!! | GTTAATTTTGTTGTATTTCC+TGG | - | chr3_4:63604293-63604312 | None:intergenic | 25.0% |
| ! | TGGGTCATTAATTTATACAT+TGG | - | chr3_4:63604342-63604361 | None:intergenic | 25.0% |
| !! | ATAATGCTACCAATCATTTT+GGG | - | chr3_4:63604432-63604451 | None:intergenic | 25.0% |
| !! | AATAATGCTACCAATCATTT+TGG | - | chr3_4:63604433-63604452 | None:intergenic | 25.0% |
| ! | TTTGTTTCATGATTGATTAC+AGG | + | chr3_4:63604455-63604474 | Msa0513350:intron | 25.0% |
| ! | CAAAAAGGAAGGAATTTAAA+AGG | - | chr3_4:63604602-63604621 | None:intergenic | 25.0% |
| ! | AAGTGAATAAGTGAGAAATT+TGG | - | chr3_4:63604749-63604768 | None:intergenic | 25.0% |
| ! | CTTCATTTCAATGTAATGAA+TGG | - | chr3_4:63604867-63604886 | None:intergenic | 25.0% |
| !! | CTTGATTTTTCTGTAAACAT+TGG | + | chr3_4:63605252-63605271 | Msa0513350:intron | 25.0% |
| ! | TATGTCTATGTTGTGTAATT+CGG | + | chr3_4:63605373-63605392 | Msa0513350:intron | 25.0% |
| ! | CATAAAATTAATCTGGATTG+TGG | + | chr3_4:63605442-63605461 | Msa0513350:intron | 25.0% |
| ! | TGGATATAGCATAGATAAAA+GGG | + | chr3_4:63605606-63605625 | Msa0513350:CDS | 25.0% |
| ! | AACTAAAAAGGAAAATGGAT+AGG | - | chr3_4:63605857-63605876 | None:intergenic | 25.0% |
| !! | TGAATGGATTCAATTCCTTT+TGG | + | chr3_4:63603157-63603176 | Msa0513350:CDS | 30.0% |
| TCTCAACATGGTTTAAATGT+AGG | + | chr3_4:63603243-63603262 | Msa0513350:CDS | 30.0% | |
| GTTTAAATGTAGGAAGAACA+TGG | + | chr3_4:63603253-63603272 | Msa0513350:CDS | 30.0% | |
| ! | ACATTTTCATCATAAGAACC+AGG | - | chr3_4:63603318-63603337 | None:intergenic | 30.0% |
| ATTCTGAATTTGCACGTATT+AGG | - | chr3_4:63603488-63603507 | None:intergenic | 30.0% | |
| ! | ATTGGATTTTGTGATATCAG+AGG | + | chr3_4:63603954-63603973 | Msa0513350:CDS | 30.0% |
| CAAAAAGAAATATGTGCAGT+GGG | + | chr3_4:63604038-63604057 | Msa0513350:CDS | 30.0% | |
| TTGTAGTATTGCTTAACAAC+AGG | - | chr3_4:63604114-63604133 | None:intergenic | 30.0% | |
| TGTATGTAACCCAAAATGAT+TGG | + | chr3_4:63604420-63604439 | Msa0513350:intron | 30.0% | |
| ACAAGAAAAAACACCATTAG+TGG | + | chr3_4:63604486-63604505 | Msa0513350:CDS | 30.0% | |
| TGATTCAGGAAAATCAATTC+AGG | + | chr3_4:63604575-63604594 | Msa0513350:CDS | 30.0% | |
| !!! | CGGTGTCTTATTTGTTTTAA+GGG | - | chr3_4:63604699-63604718 | None:intergenic | 30.0% |
| CTTTAAACTACTTGAACTTG+AGG | + | chr3_4:63604788-63604807 | Msa0513350:intron | 30.0% | |
| CATTTCAATGTAATGAATGG+TGG | - | chr3_4:63604864-63604883 | None:intergenic | 30.0% | |
| ! | TATTGATAGCAATCATTTGC+TGG | + | chr3_4:63604966-63604985 | Msa0513350:CDS | 30.0% |
| GATTTGAGGAATTTGATTGT+TGG | - | chr3_4:63605082-63605101 | None:intergenic | 30.0% | |
| TTGATCAGGGTATATATGAA+TGG | - | chr3_4:63605115-63605134 | None:intergenic | 30.0% | |
| TTCATATATACCCTGATCAA+TGG | + | chr3_4:63605115-63605134 | Msa0513350:CDS | 30.0% | |
| ATAGAGTTTACCATTGATCA+GGG | - | chr3_4:63605128-63605147 | None:intergenic | 30.0% | |
| TATAGAGTTTACCATTGATC+AGG | - | chr3_4:63605129-63605148 | None:intergenic | 30.0% | |
| !!! | CGTGTATTTTTTGTGAACAT+TGG | + | chr3_4:63605210-63605229 | Msa0513350:intron | 30.0% |
| ! | AGTGTTTTGTGAAACATTGA+TGG | + | chr3_4:63605404-63605423 | Msa0513350:intron | 30.0% |
| ! | GCATTTGTTGATAAATGGAT+AGG | + | chr3_4:63605505-63605524 | Msa0513350:CDS | 30.0% |
| ! | CAGGATTCAAATACTGTTTT+AGG | + | chr3_4:63605538-63605557 | Msa0513350:CDS | 30.0% |
| CCAAACTCTGCTATAATTAT+TGG | - | chr3_4:63605568-63605587 | None:intergenic | 30.0% | |
| CCAATAATTATAGCAGAGTT+TGG | + | chr3_4:63605565-63605584 | Msa0513350:CDS | 30.0% | |
| CTGGATATAGCATAGATAAA+AGG | + | chr3_4:63605605-63605624 | Msa0513350:CDS | 30.0% | |
| ! | ATTGATAGCACTTGTAGATA+TGG | - | chr3_4:63605659-63605678 | None:intergenic | 30.0% |
| ATATCTACAAGTGCTATCAA+TGG | + | chr3_4:63605658-63605677 | Msa0513350:CDS | 30.0% | |
| !! | AGATTGTTGTTTGATGACTT+GGG | - | chr3_4:63605785-63605804 | None:intergenic | 30.0% |
| !! | TAGATTGTTGTTTGATGACT+TGG | - | chr3_4:63605786-63605805 | None:intergenic | 30.0% |
| !! | CTTTGGCTCTTATTCAACAT+GGG | + | chr3_4:63603052-63603071 | Msa0513350:CDS | 35.0% |
| AGCATCAACGTTAACACTTT+GGG | - | chr3_4:63603082-63603101 | None:intergenic | 35.0% | |
| !! | TTCCTTTTGGTTAACGACAA+TGG | + | chr3_4:63603170-63603189 | Msa0513350:CDS | 35.0% |
| TGATCCATCTACAAGTTCTA+AGG | + | chr3_4:63603197-63603216 | Msa0513350:CDS | 35.0% | |
| !! | TTGAGAAGCTTGTTGAAAAG+TGG | - | chr3_4:63603229-63603248 | None:intergenic | 35.0% |
| TTTCAACAAGCTTCTCAACA+TGG | + | chr3_4:63603231-63603250 | Msa0513350:CDS | 35.0% | |
| ATATCAGAGGCAAGCAAATA+TGG | + | chr3_4:63603967-63603986 | Msa0513350:CDS | 35.0% | |
| AGTGAAACTTATACTGAGCT+TGG | + | chr3_4:63603990-63604009 | Msa0513350:CDS | 35.0% | |
| ! | TACTGAGCTTGGTGAATAAT+TGG | + | chr3_4:63604001-63604020 | Msa0513350:CDS | 35.0% |
| GCAAAAAGAAATATGTGCAG+TGG | + | chr3_4:63604037-63604056 | Msa0513350:CDS | 35.0% | |
| CTTGTATAACACTCCACTAA+TGG | - | chr3_4:63604502-63604521 | None:intergenic | 35.0% | |
| ! | CATTAGTGGAGTGTTATACA+AGG | + | chr3_4:63604500-63604519 | Msa0513350:CDS | 35.0% |
| !!! | GCGGTGTCTTATTTGTTTTA+AGG | - | chr3_4:63604700-63604719 | None:intergenic | 35.0% |
| GCTATCAATAGATTTGACGT+AGG | - | chr3_4:63604956-63604975 | None:intergenic | 35.0% | |
| ! | AGCAATCATTTGCTGGAAAT+AGG | + | chr3_4:63604973-63604992 | Msa0513350:CDS | 35.0% |
| ATAGGACTTGAAGGATTCTA+TGG | + | chr3_4:63604991-63605010 | Msa0513350:CDS | 35.0% | |
| ! | GGATTGAATTGCTTCTTTTG+TGG | - | chr3_4:63605027-63605046 | None:intergenic | 35.0% |
| AATCCCAATACTGCTCAAAT+TGG | + | chr3_4:63605042-63605061 | Msa0513350:CDS | 35.0% | |
| GTTCCAATTTGAGCAGTATT+GGG | - | chr3_4:63605048-63605067 | None:intergenic | 35.0% | |
| AGTTCCAATTTGAGCAGTAT+TGG | - | chr3_4:63605049-63605068 | None:intergenic | 35.0% | |
| ATCAGGGTATATATGAATGG+TGG | - | chr3_4:63605112-63605131 | None:intergenic | 35.0% | |
| !! | TTTTGTGAAACATTGATGGC+AGG | + | chr3_4:63605408-63605427 | Msa0513350:intron | 35.0% |
| !! | GGTATTGACGTATTTCCTAG+TGG | + | chr3_4:63603029-63603048 | Msa0513350:CDS | 40.0% |
| !! | GCTTTGGCTCTTATTCAACA+TGG | + | chr3_4:63603051-63603070 | Msa0513350:CDS | 40.0% |
| CAGCATCAACGTTAACACTT+TGG | - | chr3_4:63603083-63603102 | None:intergenic | 40.0% | |
| ! | CAAAGTGTTAACGTTGATGC+TGG | + | chr3_4:63603081-63603100 | Msa0513350:CDS | 40.0% |
| ! | GCTGGTTTCGTTCAAAGAAA+AGG | + | chr3_4:63603099-63603118 | Msa0513350:CDS | 40.0% |
| GGAAAGACACACTATGTGAA+TGG | + | chr3_4:63603141-63603160 | Msa0513350:CDS | 40.0% | |
| TGCCATTGTCGTTAACCAAA+AGG | - | chr3_4:63603175-63603194 | None:intergenic | 40.0% | |
| GTGACCTTAGAACTTGTAGA+TGG | - | chr3_4:63603204-63603223 | None:intergenic | 40.0% | |
| AGAACATGGGCTTTCAATGA+TGG | + | chr3_4:63603267-63603286 | Msa0513350:CDS | 40.0% | |
| AAAGCTCTTCAAATCTCTCC+TGG | + | chr3_4:63603297-63603316 | Msa0513350:CDS | 40.0% | |
| TGACTATTGCATGTGTACGT+AGG | + | chr3_4:63603930-63603949 | Msa0513350:intron | 40.0% | |
| GACTATTGCATGTGTACGTA+GGG | + | chr3_4:63603931-63603950 | Msa0513350:intron | 40.0% | |
| TCATGATTGATTACAGGCTG+TGG | + | chr3_4:63604461-63604480 | Msa0513350:intron | 40.0% | |
| !!! | ATGACCCGACTATTTTTGCT+TGG | + | chr3_4:63604523-63604542 | Msa0513350:CDS | 40.0% |
| !!! | TGACCCGACTATTTTTGCTT+GGG | + | chr3_4:63604524-63604543 | Msa0513350:CDS | 40.0% |
| AGCTCCCAAGCAAAAATAGT+CGG | - | chr3_4:63604531-63604550 | None:intergenic | 40.0% | |
| CCTGAATCATTTACGTAACG+AGG | - | chr3_4:63604564-63604583 | None:intergenic | 40.0% | |
| CCTCGTTACGTAAATGATTC+AGG | + | chr3_4:63604561-63604580 | Msa0513350:CDS | 40.0% | |
| ACTAAGTGGAGCAAGCAAAA+AGG | - | chr3_4:63604617-63604636 | None:intergenic | 40.0% | |
| ACTCTTTCCTCTACATACTG+CGG | - | chr3_4:63604719-63604738 | None:intergenic | 40.0% | |
| !! | GTAGAATTGGGTTAGTGAGA+TGG | + | chr3_4:63604927-63604946 | Msa0513350:intron | 40.0% |
| TTGCTGGAAATAGGACTTGA+AGG | + | chr3_4:63604982-63605001 | Msa0513350:CDS | 40.0% | |
| !! | ATGGTGGCAAAATCGATTTG+AGG | - | chr3_4:63605096-63605115 | None:intergenic | 40.0% |
| ! | ATGGATAGGAGCACATATTC+AGG | + | chr3_4:63605519-63605538 | Msa0513350:CDS | 40.0% |
| TCTACAAGTGCTATCAATGG+AGG | + | chr3_4:63605661-63605680 | Msa0513350:CDS | 40.0% | |
| TCTCAAGGGATGGATAACAT+GGG | + | chr3_4:63605718-63605737 | Msa0513350:CDS | 40.0% | |
| ! | TTGATGACTTGGGAAGTTGA+AGG | - | chr3_4:63605775-63605794 | None:intergenic | 40.0% |
| GACGTATTTCCTAGTGGCTT+TGG | + | chr3_4:63603035-63603054 | Msa0513350:CDS | 45.0% | |
| GAATAAGAGCCAAAGCCACT+AGG | - | chr3_4:63603047-63603066 | None:intergenic | 45.0% | |
| ACATGGGCTTTCAATGATGG+AGG | + | chr3_4:63603270-63603289 | Msa0513350:CDS | 45.0% | |
| TTGCATGTGTACGTAGGGAT+TGG | + | chr3_4:63603936-63603955 | Msa0513350:intron | 45.0% | |
| GCTCCCAAGCAAAAATAGTC+GGG | - | chr3_4:63604530-63604549 | None:intergenic | 45.0% | |
| AGTGGAGCAAGCAAAAAGGA+AGG | - | chr3_4:63604613-63604632 | None:intergenic | 45.0% | |
| CGCACACAAGCAAAACTAAG+TGG | - | chr3_4:63604631-63604650 | None:intergenic | 45.0% | |
| TAAGACACCGCAGTATGTAG+AGG | + | chr3_4:63604709-63604728 | Msa0513350:intron | 45.0% | |
| GGAAAGTCTTCAAAGTCAGC+TGG | + | chr3_4:63605586-63605605 | Msa0513350:CDS | 45.0% | |
| TTCTGGCAACTCATGTCTCA+AGG | + | chr3_4:63605703-63605722 | Msa0513350:CDS | 45.0% | |
| TCTGGCAACTCATGTCTCAA+GGG | + | chr3_4:63605704-63605723 | Msa0513350:CDS | 45.0% | |
| GTCTCAAGGGATGGATAACA+TGG | + | chr3_4:63605717-63605736 | Msa0513350:CDS | 45.0% | |
| !!! | AACTTTTTTTTTATATTTTT+TGG | - | chr3_4:63603431-63603450 | None:intergenic | 5.0% |
| !!! | ATTATTTATTTTTTATTTGA+CGG | + | chr3_4:63603455-63603474 | Msa0513350:intron | 5.0% |
| !!! | GTTAAAAATAATTTTATATA+CGG | + | chr3_4:63604386-63604405 | Msa0513350:intron | 5.0% |
| ATCTGGATTGTGGCTGATGC+AGG | + | chr3_4:63605452-63605471 | Msa0513350:intron | 50.0% | |
| TGTGGCTGATGCAGGATACA+AGG | + | chr3_4:63605460-63605479 | Msa0513350:intron | 50.0% | |
| ATCAATGGAGGCTCATGTGC+AGG | + | chr3_4:63605673-63605692 | Msa0513350:CDS | 50.0% | |
| ! | CATGTGCAGGTGGGATTTTC+TGG | + | chr3_4:63605686-63605705 | Msa0513350:CDS | 50.0% |
| GCAACTCATGTCTCAAGGGA+TGG | + | chr3_4:63605708-63605727 | Msa0513350:CDS | 50.0% | |
| GGGATGGATAACATGGGAGA+TGG | + | chr3_4:63605724-63605743 | Msa0513350:CDS | 50.0% | |
| AATGGAGGCTCATGTGCAGG+TGG | + | chr3_4:63605676-63605695 | Msa0513350:CDS | 55.0% | |
| ATGGAGGCTCATGTGCAGGT+GGG | + | chr3_4:63605677-63605696 | Msa0513350:CDS | 55.0% | |
| GTGCAGTGGGCAAGAGAACG+TGG | + | chr3_4:63604051-63604070 | Msa0513350:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 63603012 | 63605878 | 63603012 | ID=Msa0513350;Name=Msa0513350 |
| chr3_4 | mRNA | 63603012 | 63605878 | 63603012 | ID=Msa0513350-mRNA-1;Parent=Msa0513350;Name=Msa0513350-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0.5|0.4|1|1|1|5|47|403 |
| chr3_4 | exon | 63603012 | 63603344 | 63603012 | ID=Msa0513350-mRNA-1:exon:15931;Parent=Msa0513350-mRNA-1 |
| chr3_4 | exon | 63603952 | 63604146 | 63603952 | ID=Msa0513350-mRNA-1:exon:15932;Parent=Msa0513350-mRNA-1 |
| chr3_4 | exon | 63604477 | 63604596 | 63604477 | ID=Msa0513350-mRNA-1:exon:15933;Parent=Msa0513350-mRNA-1 |
| chr3_4 | exon | 63604931 | 63605136 | 63604931 | ID=Msa0513350-mRNA-1:exon:15934;Parent=Msa0513350-mRNA-1 |
| chr3_4 | exon | 63605474 | 63605878 | 63605474 | ID=Msa0513350-mRNA-1:exon:15935;Parent=Msa0513350-mRNA-1 |
| chr3_4 | CDS | 63603012 | 63603344 | 63603012 | ID=Msa0513350-mRNA-1:cds;Parent=Msa0513350-mRNA-1 |
| chr3_4 | CDS | 63603952 | 63604146 | 63603952 | ID=Msa0513350-mRNA-1:cds;Parent=Msa0513350-mRNA-1 |
| chr3_4 | CDS | 63604477 | 63604596 | 63604477 | ID=Msa0513350-mRNA-1:cds;Parent=Msa0513350-mRNA-1 |
| chr3_4 | CDS | 63604931 | 63605136 | 63604931 | ID=Msa0513350-mRNA-1:cds;Parent=Msa0513350-mRNA-1 |
| chr3_4 | CDS | 63605474 | 63605831 | 63605474 | ID=Msa0513350-mRNA-1:cds;Parent=Msa0513350-mRNA-1 |
| chr3_4 | three_prime_UTR | 63605832 | 63605878 | 63605832 | ID=Msa0513350-mRNA-1:three_prime_utr;Parent=Msa0513350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
