AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1357780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357780 MtrunA17_Chr7g0268551 99.770 434 0 1 1 434 1 433 0.0 891
Msa1357780 MtrunA17_Chr4g0068631 48.315 178 88 2 16 190 88 264 1.96e-50 181
Msa1357780 MtrunA17_Chr7g0270201 32.984 191 105 3 16 189 74 258 7.23e-28 115
Msa1357780 MtrunA17_Chr4g0044541 28.374 289 173 11 1 270 198 471 6.50e-16 80.1
Msa1357780 MtrunA17_Chr3g0110211 26.016 246 161 8 6 245 16 246 1.23e-14 75.1
Msa1357780 MtrunA17_Chr1g0201151 26.542 373 204 18 5 320 197 556 2.24e-13 72.0
Msa1357780 MtrunA17_Chr3g0121631 40.000 80 47 1 351 430 38 116 5.14e-13 66.2
Msa1357780 MtrunA17_Chr5g0447761 26.163 172 109 4 14 168 4 174 1.27e-12 69.3
Msa1357780 MtrunA17_Chr3g0133651 24.138 261 157 8 4 247 175 411 1.71e-12 68.9
Msa1357780 MtrunA17_Chr4g0050781 39.189 74 45 0 351 424 9 82 2.71e-12 65.9
Msa1357780 MtrunA17_Chr2g0278661 40.541 74 44 0 350 423 8 81 2.96e-12 66.2
Msa1357780 MtrunA17_Chr2g0290191 22.997 287 167 7 17 275 5 265 6.69e-12 67.4
Msa1357780 MtrunA17_Chr0c09g0493511 24.898 245 160 7 18 243 120 359 1.63e-11 66.2
Msa1357780 MtrunA17_Chr3g0120721 25.146 171 109 4 17 178 19 179 2.11e-11 65.1
Msa1357780 MtrunA17_Chr3g0086861 37.037 81 51 0 347 427 42 122 2.18e-11 65.5
Msa1357780 MtrunA17_Chr4g0018581 35.514 107 69 0 317 423 419 525 3.33e-11 65.5
Msa1357780 MtrunA17_Chr7g0276201 26.316 171 113 5 17 184 105 265 3.56e-11 65.1
Msa1357780 MtrunA17_Chr4g0061451 35.897 78 50 0 347 424 40 117 3.83e-11 63.5
Msa1357780 MtrunA17_Chr1g0153181 28.000 275 162 11 7 263 207 463 4.38e-11 65.1
Msa1357780 MtrunA17_Chr3g0101061 25.071 351 221 13 17 341 41 375 4.70e-11 64.7
Msa1357780 MtrunA17_Chr3g0135111 24.339 189 120 3 12 177 6 194 5.80e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357780 AT4G03110.1 69.213 432 105 10 15 433 17 433 0.0 570
Msa1357780 AT1G03457.1 66.355 428 117 10 7 428 3 409 0.0 551
Msa1357780 AT1G03457.2 64.989 437 117 11 7 428 3 418 0.0 543
Msa1357780 AT4G03110.2 68.434 396 98 9 15 398 17 397 0.0 521
Msa1357780 AT4G03110.3 68.514 397 97 10 15 398 17 398 0.0 519
Msa1357780 AT1G03457.3 62.769 325 94 10 110 428 1 304 2.71e-128 374
Msa1357780 AT4G16280.3 43.716 183 99 2 10 189 114 295 6.05e-48 172
Msa1357780 AT4G16280.4 43.716 183 99 2 10 189 39 220 4.78e-47 172
Msa1357780 AT4G16280.2 43.716 183 99 2 10 189 114 295 7.03e-47 172
Msa1357780 AT2G47310.1 32.967 182 112 2 17 189 111 291 6.31e-26 110
Msa1357780 AT4G34110.1 27.698 278 167 11 5 263 204 466 4.11e-15 78.2
Msa1357780 AT4G00830.4 26.901 171 112 5 17 184 117 277 3.98e-14 74.7
Msa1357780 AT4G00830.2 27.485 171 111 5 17 184 117 277 5.07e-14 74.3
Msa1357780 AT4G00830.1 27.485 171 111 5 17 184 117 277 5.07e-14 74.3
Msa1357780 AT4G00830.6 27.485 171 111 5 17 184 117 277 5.07e-14 74.3
Msa1357780 AT5G47620.1 25.984 254 159 9 14 253 4 242 6.38e-14 73.6
Msa1357780 AT5G47620.2 25.984 254 159 9 14 253 4 242 6.38e-14 73.6
Msa1357780 AT5G47620.5 25.984 254 159 9 14 253 4 242 6.38e-14 73.6
Msa1357780 AT2G18510.1 26.316 228 155 7 6 227 16 236 3.25e-13 71.2
Msa1357780 AT1G71770.1 26.882 279 150 11 18 250 241 511 3.88e-13 72.0
Msa1357780 AT1G71770.2 26.882 279 150 11 18 250 241 511 3.88e-13 72.0
Msa1357780 AT3G07810.2 26.316 171 106 4 17 168 7 176 9.60e-13 70.5
Msa1357780 AT3G07810.1 26.316 171 106 4 17 168 7 176 1.27e-12 70.1
Msa1357780 AT4G00830.3 29.586 169 102 5 17 184 117 269 1.53e-12 69.7
Msa1357780 AT4G00830.5 29.586 169 102 5 17 184 117 269 1.53e-12 69.7
Msa1357780 AT4G13850.2 42.169 83 47 1 351 433 37 118 1.80e-12 65.5
Msa1357780 AT4G13850.1 42.169 83 47 1 351 433 37 118 2.00e-12 65.5
Msa1357780 AT4G13850.3 42.169 83 47 1 351 433 37 118 1.01e-11 63.2
Msa1357780 AT1G22760.1 42.857 77 43 1 346 422 226 301 1.52e-11 67.0
Msa1357780 AT3G13224.2 21.698 212 131 4 17 220 20 204 1.73e-11 65.9
Msa1357780 AT4G13850.4 42.857 77 44 0 351 427 37 113 1.83e-11 62.0
Msa1357780 AT2G23350.1 26.667 345 207 17 1 324 210 529 2.25e-11 66.2
Msa1357780 AT5G50250.1 24.324 185 123 4 14 187 111 289 6.24e-11 63.5
Msa1357780 AT5G40490.1 26.316 171 107 4 17 178 43 203 6.34e-11 64.3
Msa1357780 AT5G51300.1 40.000 75 45 0 349 423 480 554 7.15e-11 64.7
Msa1357780 AT5G51300.2 40.000 75 45 0 349 423 480 554 7.15e-11 64.7
Msa1357780 AT5G51300.3 40.000 75 45 0 349 423 480 554 7.15e-11 64.7
Msa1357780 AT3G13224.3 21.698 212 131 4 17 220 11 195 8.78e-11 63.5
Msa1357780 AT1G01080.1 33.721 86 57 0 346 431 105 190 8.90e-11 63.2

Find 129 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAGCATCCTTCATTATT+TGG 0.145202 tig0016171:-37294 Msa1357780:CDS
CTTTCTCTTTCTCTCTCTTT+TGG 0.165519 tig0016171:+40661 None:intergenic
ACGATGAATTATGGCGAATT+TGG 0.213680 tig0016171:+40684 None:intergenic
TCTTTCTTCTTTCTGAGATT+TGG 0.230145 tig0016171:+40590 None:intergenic
TTAATTTCTTACCTCCTAAT+TGG 0.238990 tig0016171:+35943 None:intergenic
TTTCTTTACACGAAACTTCT+TGG 0.252350 tig0016171:-40544 Msa1357780:five_prime_UTR
TATCACATACCTCAAGAATT+TGG 0.267175 tig0016171:-36201 Msa1357780:CDS
CTTCTTGGACTCGACATTAA+TGG 0.267985 tig0016171:-40529 Msa1357780:exon
CCGGGTTCTGTTTCACCTTC+CGG 0.271077 tig0016171:-36751 Msa1357780:CDS
ATAGCAGATTGAGCAGCTTC+TGG 0.275678 tig0016171:+35984 None:intergenic
TCAACTTCAGAAATGTTCTT+TGG 0.277981 tig0016171:+38883 None:intergenic
CTGTGCTTTCTGAGCTCTTC+GGG 0.289780 tig0016171:+37344 None:intergenic
CTCCAAGTATGGAACTATAA+AGG 0.292179 tig0016171:-38845 Msa1357780:CDS
AGAACAAGCTCTTGCTGCTT+TGG 0.295520 tig0016171:-38649 Msa1357780:CDS
ACACGCATTAACGGCCTTAT+CGG 0.303507 tig0016171:+40195 None:intergenic
ATTAGGAGGTAAGAAATTAA+AGG 0.309794 tig0016171:-35940 Msa1357780:CDS
GGCTCTTATCCTGCTGTGCC+AGG 0.326848 tig0016171:-36835 Msa1357780:CDS
TAGTTTCTAGGATTCATATT+GGG 0.327152 tig0016171:+36883 None:intergenic
ATGATGAATGGATGCCAATT+AGG 0.329590 tig0016171:-35957 Msa1357780:CDS
GGCAACTCCGCTACATCATC+AGG 0.339581 tig0016171:-36721 Msa1357780:CDS
AGCAGCAAGAGCTTGTTCTT+TGG 0.340647 tig0016171:+38653 None:intergenic
TGTTCATCAGTAAGGTTTAC+CGG 0.346110 tig0016171:+35893 None:intergenic
GTTCCTCCATATAACGGTTA+TGG 0.352351 tig0016171:-37252 Msa1357780:CDS
TGATAGGCTCCTGGAAGTTA+TGG 0.362020 tig0016171:-37009 Msa1357780:intron
TGATAGCCATAACCGTTATA+TGG 0.365595 tig0016171:+37246 None:intergenic
ACCGGTGTTAGCAAATGTTT+TGG 0.367022 tig0016171:-36105 Msa1357780:intron
GGAGGCACATGATAGTTTCT+AGG 0.370299 tig0016171:+36871 None:intergenic
ATATAACGGTTATGGCTATC+AGG 0.373888 tig0016171:-37244 Msa1357780:intron
GTTTCACCTTCCGGTGGAAA+TGG 0.379419 tig0016171:-36742 Msa1357780:CDS
TTCATATTGGGGCCGAGATC+TGG 0.379609 tig0016171:+36895 None:intergenic
GCTAATGCCTTTCAACCATT+TGG 0.382505 tig0016171:-36165 Msa1357780:CDS
CTTATTGTGACACGCATTAA+CGG 0.390856 tig0016171:+40186 None:intergenic
ATCCTTTATAGTTCCATACT+TGG 0.391509 tig0016171:+38843 None:intergenic
ACTGTGCTTTCTGAGCTCTT+CGG 0.392609 tig0016171:+37343 None:intergenic
TCATCTTCCGTCATGTGTTT+CGG 0.395974 tig0016171:+40441 None:intergenic
TCAGAACACAAACTCTTCAT+TGG 0.399593 tig0016171:-38913 Msa1357780:intron
ATTGTTTGTGTTCATCAGTA+AGG 0.400663 tig0016171:+35885 None:intergenic
GTGTTCCCTTAGTTGTCAAA+TGG 0.401234 tig0016171:-37392 Msa1357780:CDS
ATAGTTTCTAGGATTCATAT+TGG 0.403096 tig0016171:+36882 None:intergenic
CAATAGAGATAGACATTATG+AGG 0.404908 tig0016171:+35749 None:intergenic
AATCAATGGAAAGCACAAAA+TGG 0.410828 tig0016171:-38622 Msa1357780:CDS
GATAGGCTCCTGGAAGTTAT+GGG 0.413886 tig0016171:-37008 Msa1357780:intron
TAAGAGCCAACATAACTTGC+AGG 0.416204 tig0016171:+36850 None:intergenic
TCACAATAAGAAAACATTAC+CGG 0.421330 tig0016171:-40173 Msa1357780:CDS
GGCATGAGCCCATAACTTCC+AGG 0.430186 tig0016171:+37000 None:intergenic
TAGCAGATTGAGCAGCTTCT+GGG 0.433513 tig0016171:+35985 None:intergenic
ATTATTTGGAGCCATGCCTA+TGG 0.433566 tig0016171:-37280 Msa1357780:CDS
ACAAGCTCTTGCTGCTTTGG+AGG 0.434947 tig0016171:-38646 Msa1357780:CDS
AATTAAAGGTTCAGCATAAG+AGG 0.436395 tig0016171:-35926 Msa1357780:CDS
CCAGGTTGATTCTGCATTGG+TGG 0.451380 tig0016171:+36964 None:intergenic
TGTTGTAGCCCTGGCACAGC+AGG 0.464958 tig0016171:+36826 None:intergenic
TTATCGGCTTCATCTCTAGA+AGG 0.468242 tig0016171:+40211 None:intergenic
ATCAGCCCATTTGACAACTA+AGG 0.471151 tig0016171:+37386 None:intergenic
GCTGCTTTGGAGGCAATCAA+TGG 0.477211 tig0016171:-38636 Msa1357780:CDS
TTCTAGAGATGAAGCCGATA+AGG 0.478824 tig0016171:-40209 Msa1357780:CDS
AAGACCTTTGAATAGTCCTC+CGG 0.483308 tig0016171:-36770 Msa1357780:CDS
GCACTCAAAACTCTACCAAA+TGG 0.487510 tig0016171:+36150 None:intergenic
CACAATAAGAAAACATTACC+GGG 0.488544 tig0016171:-40172 Msa1357780:CDS
AATGCATTGCGGCCAGATCT+CGG 0.489842 tig0016171:-36907 Msa1357780:CDS
GGTTATGTTCCTCCATATAA+CGG 0.491884 tig0016171:-37258 Msa1357780:CDS
CAAATGGGCTGATACTGAAA+AGG 0.494167 tig0016171:-37376 Msa1357780:CDS
TGTTCCCTTAGTTGTCAAAT+GGG 0.495874 tig0016171:-37391 Msa1357780:CDS
GTGCCTCCTGCAAGTTATGT+TGG 0.499189 tig0016171:-36856 Msa1357780:CDS
GGTTGATTCTGCATTGGTGG+CGG 0.512156 tig0016171:+36967 None:intergenic
GGAGGACTATTCAAAGGTCT+TGG 0.514145 tig0016171:+36772 None:intergenic
ATGATGCCTCACATGAATCA+AGG 0.516257 tig0016171:-36931 Msa1357780:CDS
GCCATTGGATGTTGTAGCCC+TGG 0.519383 tig0016171:+36817 None:intergenic
CAACATCCAATGGCATATCC+TGG 0.523094 tig0016171:-36808 Msa1357780:CDS
AAATTGTATTAACATTAGAC+TGG 0.525639 tig0016171:+35830 None:intergenic
AACTCTACCAAATGGTTGAA+AGG 0.528070 tig0016171:+36158 None:intergenic
ACCAAAACATTTGCTAACAC+CGG 0.528122 tig0016171:+36104 None:intergenic
AGTTTCTAGGATTCATATTG+GGG 0.528224 tig0016171:+36884 None:intergenic
CATAAGAGGGACAACAAACC+CGG 0.531629 tig0016171:-35912 Msa1357780:CDS
TCTGCTATTAGTATGATGAA+TGG 0.533660 tig0016171:-35969 Msa1357780:CDS
TCTGGTGGTGGTCAAGCTGA+AGG 0.536580 tig0016171:-36685 Msa1357780:intron
GCTCTTATCCTGCTGTGCCA+GGG 0.537282 tig0016171:-36834 Msa1357780:CDS
GACATTAATGGCGGAAACAA+AGG 0.537761 tig0016171:-40517 Msa1357780:exon
AGCGGAGTTGCCATTTCCAC+CGG 0.538304 tig0016171:+36732 None:intergenic
GGTTCTCAACAGACAAGTAA+AGG 0.545378 tig0016171:-38805 Msa1357780:intron
TTATTTGGAGCCATGCCTAT+GGG 0.546418 tig0016171:-37279 Msa1357780:CDS
CCACCAATGCAGAATCAACC+TGG 0.548396 tig0016171:-36964 Msa1357780:CDS
ATTGGTGGCGGCATGCGGTA+CGG 0.551343 tig0016171:+36979 None:intergenic
TAACCAGGTTGATTCTGCAT+TGG 0.557945 tig0016171:+36961 None:intergenic
TCTTGATCTCCAAATTCTTG+AGG 0.562460 tig0016171:+36192 None:intergenic
GGCATGGCTCCAAATAATGA+AGG 0.562854 tig0016171:+37285 None:intergenic
GAAGTATGCAGATGGCGAGT+TGG 0.566206 tig0016171:-39080 Msa1357780:CDS
AGACCTTTGAATAGTCCTCC+GGG 0.566774 tig0016171:-36769 Msa1357780:CDS
TCTGCATACTTCACTTGCAA+TGG 0.570290 tig0016171:+39091 None:intergenic
ATTCCTCCAGGATATGCCAT+TGG 0.572038 tig0016171:+36802 None:intergenic
TTACTGATGAACACAAACAA+TGG 0.572912 tig0016171:-35883 Msa1357780:exon
GGCATCATATTGTGGTAACC+AGG 0.578815 tig0016171:+36946 None:intergenic
CTTGGACTAATCATTCCTCC+AGG 0.583450 tig0016171:+36790 None:intergenic
GATGGCGAGTTGGAAAGATT+AGG 0.585947 tig0016171:-39070 Msa1357780:intron
TCAGCCCATTTGACAACTAA+GGG 0.587954 tig0016171:+37387 None:intergenic
AAAGCTACACGCGCTTCTCG+AGG 0.592067 tig0016171:-40360 Msa1357780:intron
CCGGAAGGTGAAACAGAACC+CGG 0.596705 tig0016171:+36751 None:intergenic
ACAGTCTCAAGCTTCTAATG+TGG 0.599106 tig0016171:-37325 Msa1357780:CDS
GCCAGGGCTACAACATCCAA+TGG 0.601565 tig0016171:-36818 Msa1357780:CDS
CAGTCTCAAGCTTCTAATGT+GGG 0.603411 tig0016171:-37324 Msa1357780:CDS
TAGATAAACAGATTTGCGCC+AGG 0.605436 tig0016171:+36222 None:intergenic
ATTAAAGGTTCAGCATAAGA+GGG 0.606375 tig0016171:-35925 Msa1357780:CDS
GGTTCTGTTTCACCTTCCGG+TGG 0.607587 tig0016171:-36748 Msa1357780:CDS
GTTCATCAGTAAGGTTTACC+GGG 0.607881 tig0016171:+35894 None:intergenic
AGCAGATTGAGCAGCTTCTG+GGG 0.608016 tig0016171:+35986 None:intergenic
GAAAGTGTGAAATTGTTCGT+AGG 0.610831 tig0016171:-40471 Msa1357780:CDS
TCTGCATTGGTGGCGGCATG+CGG 0.611389 tig0016171:+36974 None:intergenic
ATGAATGGATGCCAATTAGG+AGG 0.617833 tig0016171:-35954 Msa1357780:CDS
GCATTTCCTTGATTCATGTG+AGG 0.618490 tig0016171:+36925 None:intergenic
TTGCAAGTGAAGTATGCAGA+TGG 0.626113 tig0016171:-39088 Msa1357780:CDS
AATAGAGATAGACATTATGA+GGG 0.626213 tig0016171:+35750 None:intergenic
TATGGAGGAACATAACCCAT+AGG 0.632075 tig0016171:+37264 None:intergenic
CAATGGAAAGCACAAAATGG+AGG 0.634591 tig0016171:-38619 Msa1357780:intron
TCATGTGAGGCATCATATTG+TGG 0.649926 tig0016171:+36938 None:intergenic
GAACCCGGAGGACTATTCAA+AGG 0.652026 tig0016171:+36766 None:intergenic
GAGTTGCCATTTCCACCGGA+AGG 0.654667 tig0016171:+36736 None:intergenic
GCAACTCCGCTACATCATCA+GGG 0.663111 tig0016171:-36720 Msa1357780:CDS
CTTGGACTCGACATTAATGG+CGG 0.668095 tig0016171:-40526 Msa1357780:exon
GCTGGACCCTGATGATGTAG+CGG 0.669272 tig0016171:+36714 None:intergenic
AGGAACATAACCCATAGGCA+TGG 0.673621 tig0016171:+37269 None:intergenic
TAGCCATAACCGTTATATGG+AGG 0.682373 tig0016171:+37249 None:intergenic
GTCGTCGATGCAAATTGACA+AGG 0.687287 tig0016171:+40630 None:intergenic
TGAATCAAGGAAATGCATTG+CGG 0.688594 tig0016171:-36918 Msa1357780:CDS
TCAAGTACCGAAACACATGA+CGG 0.692471 tig0016171:-40448 Msa1357780:CDS
ATAAACAGATTTGCGCCAGG+TGG 0.694236 tig0016171:+36225 None:intergenic
ACAATAAGAAAACATTACCG+GGG 0.696985 tig0016171:-40171 Msa1357780:CDS
GAGCCAACATAACTTGCAGG+AGG 0.697782 tig0016171:+36853 None:intergenic
CAATAAGAAAACATTACCGG+GGG 0.709469 tig0016171:-40170 Msa1357780:intron
CATCCAATGGCATATCCTGG+AGG 0.717452 tig0016171:-36805 Msa1357780:CDS
GAAGGTGAAACAGAACCCGG+AGG 0.790629 tig0016171:+36754 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCAATTATGTAATTAT+TGG - tig0016171:36910-36929 Msa1357780:CDS 10.0%
!! AATAATGATACAAAATAATT+TGG + tig0016171:37312-37331 None:intergenic 10.0%
!!! GTAATATAATGTATTTTATA+TGG - tig0016171:37961-37980 Msa1357780:intron 10.0%
!! TCATATAAATAATTATTAAC+GGG + tig0016171:38577-38596 None:intergenic 10.0%
!! GTCATATAAATAATTATTAA+CGG + tig0016171:38578-38597 None:intergenic 10.0%
!! TTAATAATTATTTATATGAC+AGG - tig0016171:38578-38597 Msa1357780:intron 10.0%
!! AAAAAAAAACACGAAAATTA+GGG + tig0016171:36221-36240 None:intergenic 15.0%
!! AAAAAAAAAACACGAAAATT+AGG + tig0016171:36222-36241 None:intergenic 15.0%
!! TCATATGAATTGAATAAAAA+CGG + tig0016171:36383-36402 None:intergenic 15.0%
!!! AATTTTAGCAATTTATGTTT+TGG - tig0016171:36505-36524 Msa1357780:intron 15.0%
!! CTGATAATAATTTAAGAAAA+TGG - tig0016171:36685-36704 Msa1357780:intron 15.0%
!! TAATAATTTAAGAAAATGGA+CGG - tig0016171:36689-36708 Msa1357780:CDS 15.0%
!! GGAATAAAATTTAAAAATTC+AGG + tig0016171:37906-37925 None:intergenic 15.0%
!!! TTATTCCTATTTTTCATTTT+TGG - tig0016171:37919-37938 Msa1357780:intron 15.0%
!! CATGTTGATATATTTATATT+CGG - tig0016171:39865-39884 Msa1357780:intron 15.0%
!!! ATATTACTATATTTTCACTT+AGG - tig0016171:40228-40247 Msa1357780:CDS 15.0%
!!! TTTTCGTGTTTTTTTTTTGT+AGG - tig0016171:36224-36243 Msa1357780:CDS 20.0%
!! ATTATTATCAGTGTCATATA+TGG + tig0016171:36676-36695 None:intergenic 20.0%
!! AATAATTTAAGAAAATGGAC+GGG - tig0016171:36690-36709 Msa1357780:CDS 20.0%
!! CATTAGTGACATAATTAAAA+TGG + tig0016171:37138-37157 None:intergenic 20.0%
!!! ATGTTTTTTGTTTCTAATTC+AGG - tig0016171:37355-37374 Msa1357780:CDS 20.0%
!! AGATAATTACTTATGAAAGA+AGG + tig0016171:37531-37550 None:intergenic 20.0%
!!! AAGGATTTACAAATTTTAAG+AGG - tig0016171:37651-37670 Msa1357780:intron 20.0%
!! ATTCATTCTTTATTCTTTCT+AGG - tig0016171:37713-37732 Msa1357780:intron 20.0%
!! AAATTTAAAAATTCAGGTGA+TGG + tig0016171:37900-37919 None:intergenic 20.0%
!! TACTACCAAAAATGAAAAAT+AGG + tig0016171:37927-37946 None:intergenic 20.0%
!! ATTATATTACACAATTAACC+TGG + tig0016171:37951-37970 None:intergenic 20.0%
!!! CATCTTGTATTTAAAATGAT+TGG + tig0016171:38093-38112 None:intergenic 20.0%
!!! TCATTTTAAATACAAGATGA+AGG - tig0016171:38094-38113 Msa1357780:intron 20.0%
!!! GTTACAATTTTAGTTGTAAA+TGG - tig0016171:38346-38365 Msa1357780:intron 20.0%
!! AAAATTGAAATAACAATTGC+AGG + tig0016171:38468-38487 None:intergenic 20.0%
!!! AAAATGTGATGATTTTTGAA+TGG + tig0016171:39340-39359 None:intergenic 20.0%
!! AATAAGTTAAAGGACTAAAA+AGG + tig0016171:39899-39918 None:intergenic 20.0%
!!! ATCTCTAAAATGAGTAAATT+TGG + tig0016171:40116-40135 None:intergenic 20.0%
!!! TAAAGCCTTAAATACATTTT+TGG + tig0016171:40175-40194 None:intergenic 20.0%
!! TAGTAATATTTATCGTTGTA+AGG + tig0016171:40217-40236 None:intergenic 20.0%
!! CTTATTAGTAATGAATTTGA+TGG - tig0016171:40407-40426 Msa1357780:CDS 20.0%
!! AAATTGTATTAACATTAGAC+TGG + tig0016171:40650-40669 None:intergenic 20.0%
!!! ATTTGGTTTTTCGTAATTTG+GGG + tig0016171:35873-35892 None:intergenic 25.0%
!!! GATTTGGTTTTTCGTAATTT+GGG + tig0016171:35874-35893 None:intergenic 25.0%
!!! AGATTTGGTTTTTCGTAATT+TGG + tig0016171:35875-35894 None:intergenic 25.0%
! TAGTAGATTTGAAGAATTAG+CGG + tig0016171:36180-36199 None:intergenic 25.0%
! TCACAATAAGAAAACATTAC+CGG - tig0016171:36304-36323 Msa1357780:intron 25.0%
!! TTATGCTGTTTAATTCAATG+TGG - tig0016171:36355-36374 Msa1357780:intron 25.0%
! ATGAAAGCTATAATAAGAGT+GGG + tig0016171:36554-36573 None:intergenic 25.0%
! ATAATTTAAGAAAATGGACG+GGG - tig0016171:36691-36710 Msa1357780:CDS 25.0%
! GTTCATCAAAATAACAAACT+TGG + tig0016171:36778-36797 None:intergenic 25.0%
! ATTGAACAGATAAAGATGAT+TGG - tig0016171:36813-36832 Msa1357780:CDS 25.0%
!! TAACACTATTTTCTTTGACA+AGG + tig0016171:36875-36894 None:intergenic 25.0%
! TCTATAATTAAGTTTAGTGC+CGG - tig0016171:36944-36963 Msa1357780:CDS 25.0%
!! TTGCGTTTCATTGAAATTTT+TGG - tig0016171:37046-37065 Msa1357780:intron 25.0%
!! TGCGTTTCATTGAAATTTTT+GGG - tig0016171:37047-37066 Msa1357780:intron 25.0%
! TAATTCATTCATAGGTTACT+TGG + tig0016171:37082-37101 None:intergenic 25.0%
! AGTTAACGTAATTCATTCAT+AGG + tig0016171:37090-37109 None:intergenic 25.0%
! TATGAATGAATTACGTTAAC+TGG - tig0016171:37089-37108 Msa1357780:intron 25.0%
! ATATTTGTATCACAACTACT+TGG + tig0016171:37191-37210 None:intergenic 25.0%
! TCAAAATGTTCAATAGTATC+CGG + tig0016171:37224-37243 None:intergenic 25.0%
! TCATTATTCTTCATTCAGAT+TGG - tig0016171:37324-37343 Msa1357780:CDS 25.0%
! CATTATTCTTCATTCAGATT+GGG - tig0016171:37325-37344 Msa1357780:CDS 25.0%
! GCATGTCATTGATATAAAAA+TGG + tig0016171:37509-37528 None:intergenic 25.0%
!!! AAGTAAAGGTGCTTATTTTA+CGG - tig0016171:37686-37705 Msa1357780:intron 25.0%
!! TCTTTATTCTTTCTAGGTTT+TGG - tig0016171:37719-37738 Msa1357780:intron 25.0%
! TCATTCTATACAGAAATAGA+AGG - tig0016171:38019-38038 Msa1357780:intron 25.0%
! ACTACTATTTAGCAATATAG+TGG - tig0016171:38173-38192 Msa1357780:intron 25.0%
!! TTAGATAGATAACATGCTTT+TGG - tig0016171:38278-38297 Msa1357780:intron 25.0%
! TACAACTAAAATTGTAACTG+AGG + tig0016171:38344-38363 None:intergenic 25.0%
! AATGATAATAAATGACTTCC+AGG + tig0016171:38963-38982 None:intergenic 25.0%
! GGAAGTCATTTATTATCATT+TGG - tig0016171:38963-38982 Msa1357780:intron 25.0%
! TGATATATGTTGTCATGTAT+AGG - tig0016171:39056-39075 Msa1357780:intron 25.0%
! GATATATGTTGTCATGTATA+GGG - tig0016171:39057-39076 Msa1357780:intron 25.0%
!! GACATTAATTTTCTCTTGAT+AGG - tig0016171:39452-39471 Msa1357780:intron 25.0%
!!! TAGTTTCTAGGATTCATATT+GGG + tig0016171:39597-39616 None:intergenic 25.0%
!!! ATAGTTTCTAGGATTCATAT+TGG + tig0016171:39598-39617 None:intergenic 25.0%
!!! AGTCCTTTAACTTATTTTTG+AGG - tig0016171:39903-39922 Msa1357780:intron 25.0%
! GAACCTCAAAAATAAGTTAA+AGG + tig0016171:39909-39928 None:intergenic 25.0%
!!! CTTATTTTTGAGGTTCAATT+TGG - tig0016171:39913-39932 Msa1357780:intron 25.0%
! GTTTAGGGAAATAGTAATAA+AGG + tig0016171:40059-40078 None:intergenic 25.0%
! TTATTACTATTTCCCTAAAC+TGG - tig0016171:40059-40078 Msa1357780:intron 25.0%
! TTAATTTCTTACCTCCTAAT+TGG + tig0016171:40537-40556 None:intergenic 25.0%
! ATTAGGAGGTAAGAAATTAA+AGG - tig0016171:40537-40556 Msa1357780:five_prime_UTR 25.0%
!!! TTTGGTTTTTCGTAATTTGG+GGG + tig0016171:35872-35891 None:intergenic 30.0%
!! TCTTTCTTCTTTCTGAGATT+TGG + tig0016171:35890-35909 None:intergenic 30.0%
TTTCTTTACACGAAACTTCT+TGG - tig0016171:35933-35952 Msa1357780:CDS 30.0%
CACAATAAGAAAACATTACC+GGG - tig0016171:36305-36324 Msa1357780:intron 30.0%
ACAATAAGAAAACATTACCG+GGG - tig0016171:36306-36325 Msa1357780:intron 30.0%
!!! TTGGTGCTTATTGCTATTTT+TGG - tig0016171:36524-36543 Msa1357780:intron 30.0%
!!! TGGTGCTTATTGCTATTTTT+GGG - tig0016171:36525-36544 Msa1357780:intron 30.0%
GATGAAAGCTATAATAAGAG+TGG + tig0016171:36555-36574 None:intergenic 30.0%
ACCAAAAATGTGAAACACTA+GGG + tig0016171:36604-36623 None:intergenic 30.0%
AACCAAAAATGTGAAACACT+AGG + tig0016171:36605-36624 None:intergenic 30.0%
TACAAATATGCCTAAAAAGC+CGG - tig0016171:37202-37221 Msa1357780:intron 30.0%
TCAACTTCAGAAATGTTCTT+TGG + tig0016171:37597-37616 None:intergenic 30.0%
ATCCTTTATAGTTCCATACT+TGG + tig0016171:37637-37656 None:intergenic 30.0%
TTCCTTAATCACAATTCACA+AGG - tig0016171:37744-37763 Msa1357780:intron 30.0%
! AATCAATGGAAAGCACAAAA+TGG - tig0016171:37855-37874 Msa1357780:intron 30.0%
AAAATTGTAACTGAGGTTGA+AGG + tig0016171:38337-38356 None:intergenic 30.0%
AAATGGTCTTTGCAGTATAT+TGG - tig0016171:38363-38382 Msa1357780:intron 30.0%
ATTCAGTCACAAAATCTTGT+TGG - tig0016171:38399-38418 Msa1357780:intron 30.0%
! ATTATTAACGGGTAAAACCT+AGG + tig0016171:38566-38585 None:intergenic 30.0%
! AGGGAAAATAATTTGTGCTT+GGG + tig0016171:38856-38875 None:intergenic 30.0%
! AGCATCTGATCAGTAATTTT+GGG + tig0016171:38898-38917 None:intergenic 30.0%
! TAGCATCTGATCAGTAATTT+TGG + tig0016171:38899-38918 None:intergenic 30.0%
TGCAAACACAAGACAAAAAA+AGG + tig0016171:38937-38956 None:intergenic 30.0%
ACACACATGACAAAATTTGA+CGG - tig0016171:39000-39019 Msa1357780:intron 30.0%
!! AGTTTCTAGGATTCATATTG+GGG + tig0016171:39596-39615 None:intergenic 30.0%
AAATGACCAACTTGTGTTAA+CGG + tig0016171:39974-39993 None:intergenic 30.0%
TAGTAATAAAGGCTTAGCTT+TGG + tig0016171:40048-40067 None:intergenic 30.0%
TCACTTGCAATGTTTGATAA+CGG + tig0016171:40093-40112 None:intergenic 30.0%
! CCTTAACCTAATTTAAGGTT+CGG + tig0016171:40150-40169 None:intergenic 30.0%
CGAACCTTAAATTAGGTTAA+GGG - tig0016171:40148-40167 Msa1357780:intron 30.0%
AGGGACCAAAAATGTATTTA+AGG - tig0016171:40167-40186 Msa1357780:intron 30.0%
TATCACATACCTCAAGAATT+TGG - tig0016171:40276-40295 Msa1357780:intron 30.0%
TTCATTACTAATAAGAGCAG+AGG + tig0016171:40402-40421 None:intergenic 30.0%
!!! TGAATTTGATGGATTTTGTG+TGG - tig0016171:40418-40437 Msa1357780:CDS 30.0%
TCTGCTATTAGTATGATGAA+TGG - tig0016171:40508-40527 Msa1357780:CDS 30.0%
AATTAAAGGTTCAGCATAAG+AGG - tig0016171:40551-40570 Msa1357780:five_prime_UTR 30.0%
ATTAAAGGTTCAGCATAAGA+GGG - tig0016171:40552-40571 Msa1357780:five_prime_UTR 30.0%
ATTGTTTGTGTTCATCAGTA+AGG + tig0016171:40595-40614 None:intergenic 30.0%
TTACTGATGAACACAAACAA+TGG - tig0016171:40594-40613 Msa1357780:five_prime_UTR 30.0%
ACGATGAATTATGGCGAATT+TGG + tig0016171:35796-35815 None:intergenic 35.0%
! CTCTTTTGGACGATGAATTA+TGG + tig0016171:35805-35824 None:intergenic 35.0%
! CTTTCTCTTTCTCTCTCTTT+TGG + tig0016171:35819-35838 None:intergenic 35.0%
! GAAAGTGTGAAATTGTTCGT+AGG - tig0016171:36006-36025 Msa1357780:CDS 35.0%
CTTATTGTGACACGCATTAA+CGG + tig0016171:36294-36313 None:intergenic 35.0%
CAATAAGAAAACATTACCGG+GGG - tig0016171:36307-36326 Msa1357780:intron 35.0%
! ATGTGAAACACTAGGGTATT+GGG + tig0016171:36597-36616 None:intergenic 35.0%
AATGTGAAACACTAGGGTAT+TGG + tig0016171:36598-36617 None:intergenic 35.0%
! ACCCTAGTGTTTCACATTTT+TGG - tig0016171:36600-36619 Msa1357780:intron 35.0%
!! TGTATCGTGTTAGTTCTACT+AGG - tig0016171:36747-36766 Msa1357780:CDS 35.0%
! TGACACAATTGTTGTTACTG+TGG - tig0016171:36989-37008 Msa1357780:CDS 35.0%
! GACACAATTGTTGTTACTGT+GGG - tig0016171:36990-37009 Msa1357780:CDS 35.0%
AATGAATTACGTTAACTGGC+AGG - tig0016171:37093-37112 Msa1357780:intron 35.0%
GACATAATTAAAATGGAGCG+TGG + tig0016171:37131-37150 None:intergenic 35.0%
TTTGTATCACAACTACTTGG+AGG + tig0016171:37188-37207 None:intergenic 35.0%
! TCAATAGTATCCGGCTTTTT+AGG + tig0016171:37215-37234 None:intergenic 35.0%
TTTGACGACTTGATTATCCA+AGG - tig0016171:37239-37258 Msa1357780:intron 35.0%
! TGTTTAGAACACTGAAGTGT+TGG - tig0016171:37265-37284 Msa1357780:CDS 35.0%
TCAGAACACAAACTCTTCAT+TGG - tig0016171:37564-37583 Msa1357780:intron 35.0%
CTCCAAGTATGGAACTATAA+AGG - tig0016171:37632-37651 Msa1357780:intron 35.0%
! AGCCTTGTGAATTGTGATTA+AGG + tig0016171:37749-37768 None:intergenic 35.0%
TTCTCTTACCATGTTGTAGT+AGG - tig0016171:37778-37797 Msa1357780:intron 35.0%
!!! TTTCATTTTTGGTAGTAGCC+AGG - tig0016171:37930-37949 Msa1357780:intron 35.0%
ATACAGAAATAGAAGGCAAG+TGG - tig0016171:38026-38045 Msa1357780:intron 35.0%
TACAGAAATAGAAGGCAAGT+GGG - tig0016171:38027-38046 Msa1357780:intron 35.0%
! GTTGAACCGCTTATTCTTTT+TGG - tig0016171:38056-38075 Msa1357780:intron 35.0%
! AACCGCTTATTCTTTTTGGA+TGG - tig0016171:38060-38079 Msa1357780:intron 35.0%
TGCCATCCAAAAAGAATAAG+CGG + tig0016171:38065-38084 None:intergenic 35.0%
TTTGTATCCCTGTCTCAAAA+TGG - tig0016171:38485-38504 Msa1357780:intron 35.0%
!!! TAGGTTTCCATTTTGAGACA+GGG + tig0016171:38495-38514 None:intergenic 35.0%
!!! TTAGGTTTCCATTTTGAGAC+AGG + tig0016171:38496-38515 None:intergenic 35.0%
GTCTCAAAATGGAAACCTAA+TGG - tig0016171:38496-38515 Msa1357780:intron 35.0%
TCAAAATGGAAACCTAATGG+TGG - tig0016171:38499-38518 Msa1357780:intron 35.0%
CAAAATGGAAACCTAATGGT+GGG - tig0016171:38500-38519 Msa1357780:intron 35.0%
AACTTGATCCAAGTTTGGAA+AGG - tig0016171:38605-38624 Msa1357780:intron 35.0%
ACTTGATCCAAGTTTGGAAA+GGG - tig0016171:38606-38625 Msa1357780:intron 35.0%
! TGATTTTCCCTTTCCAAACT+TGG + tig0016171:38616-38635 None:intergenic 35.0%
TCTTGAGATTTATTCAGCTC+GGG + tig0016171:38682-38701 None:intergenic 35.0%
GTCTTGAGATTTATTCAGCT+CGG + tig0016171:38683-38702 None:intergenic 35.0%
AGCTGAATAAATCTCAAGAC+TGG - tig0016171:38683-38702 Msa1357780:CDS 35.0%
GCTGAATAAATCTCAAGACT+GGG - tig0016171:38684-38703 Msa1357780:intron 35.0%
! GAGGGAAAATAATTTGTGCT+TGG + tig0016171:38857-38876 None:intergenic 35.0%
! GCACAAATTATTTTCCCTCT+TGG - tig0016171:38858-38877 Msa1357780:CDS 35.0%
TGTTCCCTTAGTTGTCAAAT+GGG - tig0016171:39086-39105 Msa1357780:CDS 35.0%
TCTCAGCATCCTTCATTATT+TGG - tig0016171:39183-39202 Msa1357780:intron 35.0%
GGTTATGTTCCTCCATATAA+CGG - tig0016171:39219-39238 Msa1357780:intron 35.0%
TGATAGCCATAACCGTTATA+TGG + tig0016171:39234-39253 None:intergenic 35.0%
ATATAACGGTTATGGCTATC+AGG - tig0016171:39233-39252 Msa1357780:intron 35.0%
GAGAAGAACTGCATGAATTA+AGG + tig0016171:39303-39322 None:intergenic 35.0%
TGAATCAAGGAAATGCATTG+CGG - tig0016171:39559-39578 Msa1357780:intron 35.0%
!!! GGGACTCATTTTAGAGTTAA+GGG + tig0016171:39940-39959 None:intergenic 35.0%
! TGTTAACGGACATAACTTAG+GGG + tig0016171:39960-39979 None:intergenic 35.0%
! GTGTTAACGGACATAACTTA+GGG + tig0016171:39961-39980 None:intergenic 35.0%
! TGTGTTAACGGACATAACTT+AGG + tig0016171:39962-39981 None:intergenic 35.0%
TTATGTCCGTTAACACAAGT+TGG - tig0016171:39965-39984 Msa1357780:intron 35.0%
ACCAAACCGAACCTTAAATT+AGG - tig0016171:40141-40160 Msa1357780:intron 35.0%
! ACCTAATTTAAGGTTCGGTT+TGG + tig0016171:40145-40164 None:intergenic 35.0%
CCGAACCTTAAATTAGGTTA+AGG - tig0016171:40147-40166 Msa1357780:intron 35.0%
TGGTCCCTTAACCTAATTTA+AGG + tig0016171:40155-40174 None:intergenic 35.0%
TCTTGATCTCCAAATTCTTG+AGG + tig0016171:40288-40307 None:intergenic 35.0%
AACTCTACCAAATGGTTGAA+AGG + tig0016171:40322-40341 None:intergenic 35.0%
! GTTTTTGTTGACAAAGCAAC+CGG - tig0016171:40354-40373 Msa1357780:intron 35.0%
! ACCAAAACATTTGCTAACAC+CGG + tig0016171:40376-40395 None:intergenic 35.0%
ATGATGAATGGATGCCAATT+AGG - tig0016171:40520-40539 Msa1357780:exon 35.0%
TGTTCATCAGTAAGGTTTAC+CGG + tig0016171:40587-40606 None:intergenic 35.0%
CTTCTTGGACTCGACATTAA+TGG - tig0016171:35948-35967 Msa1357780:CDS 40.0%
! GACATTAATGGCGGAAACAA+AGG - tig0016171:35960-35979 Msa1357780:CDS 40.0%
!! TCAAGTACCGAAACACATGA+CGG - tig0016171:36029-36048 Msa1357780:intron 40.0%
TCATCTTCCGTCATGTGTTT+CGG + tig0016171:36039-36058 None:intergenic 40.0%
!! TTATCGGCTTCATCTCTAGA+AGG + tig0016171:36269-36288 None:intergenic 40.0%
! TTCTAGAGATGAAGCCGATA+AGG - tig0016171:36268-36287 Msa1357780:intron 40.0%
AAAATTACTAAACGCACCCC+CGG + tig0016171:36326-36345 None:intergenic 40.0%
!! TGTGAAACACTAGGGTATTG+GGG + tig0016171:36596-36615 None:intergenic 40.0%
AGAAAATGGACGGGGTTAAA+TGG - tig0016171:36699-36718 Msa1357780:CDS 40.0%
! TAAGTTTAGTGCCGGAATTG+TGG - tig0016171:36952-36971 Msa1357780:CDS 40.0%
! TGTTTTCCAGACCACAATTC+CGG + tig0016171:36966-36985 None:intergenic 40.0%
GAATTGTGGTCTGGAAAACA+CGG - tig0016171:36966-36985 Msa1357780:CDS 40.0%
ACAAACGCAAGTTATCATGC+AGG + tig0016171:37161-37180 None:intergenic 40.0%
! CAGTGTTCTAAACAAAGCCT+TGG + tig0016171:37259-37278 None:intergenic 40.0%
TCTGCATACTTCACTTGCAA+TGG + tig0016171:37389-37408 None:intergenic 40.0%
TTGCAAGTGAAGTATGCAGA+TGG - tig0016171:37389-37408 Msa1357780:CDS 40.0%
! TCTGCACTTTTCTCCAAGTA+TGG - tig0016171:37621-37640 Msa1357780:intron 40.0%
GGTTCTCAACAGACAAGTAA+AGG - tig0016171:37672-37691 Msa1357780:intron 40.0%
ATGCACAACCTACTACAACA+TGG + tig0016171:37789-37808 None:intergenic 40.0%
! CAATGGAAAGCACAAAATGG+AGG - tig0016171:37858-37877 Msa1357780:intron 40.0%
AGTTGAAACCCTGACTAAGA+TGG - tig0016171:38240-38259 Msa1357780:intron 40.0%
!!! TGCTTTTGGTTCCTTGTATG+TGG - tig0016171:38292-38311 Msa1357780:intron 40.0%
GTTCCTTGTATGTGGTAGAA+TGG - tig0016171:38300-38319 Msa1357780:intron 40.0%
TCTCCATTCTACCACATACA+AGG + tig0016171:38306-38325 None:intergenic 40.0%
CAGTATATTGGACCTTCAAG+CGG - tig0016171:38375-38394 Msa1357780:intron 40.0%
! TTCCCTACAATGGCTTGTAT+AGG - tig0016171:38527-38546 Msa1357780:intron 40.0%
GTCCTATACAAGCCATTGTA+GGG + tig0016171:38532-38551 None:intergenic 40.0%
TGTCCTATACAAGCCATTGT+AGG + tig0016171:38533-38552 None:intergenic 40.0%
TTGACTGAAACAGTGCACAA+AGG + tig0016171:38731-38750 None:intergenic 40.0%
!! TGAAGACTAGTTTGCCAAGA+GGG + tig0016171:38875-38894 None:intergenic 40.0%
GTGTTCCCTTAGTTGTCAAA+TGG - tig0016171:39085-39104 Msa1357780:CDS 40.0%
TCAGCCCATTTGACAACTAA+GGG + tig0016171:39093-39112 None:intergenic 40.0%
ATCAGCCCATTTGACAACTA+AGG + tig0016171:39094-39113 None:intergenic 40.0%
!! CAAATGGGCTGATACTGAAA+AGG - tig0016171:39101-39120 Msa1357780:CDS 40.0%
ACAGTCTCAAGCTTCTAATG+TGG - tig0016171:39152-39171 Msa1357780:intron 40.0%
CAGTCTCAAGCTTCTAATGT+GGG - tig0016171:39153-39172 Msa1357780:intron 40.0%
! ATTATTTGGAGCCATGCCTA+TGG - tig0016171:39197-39216 Msa1357780:intron 40.0%
! TTATTTGGAGCCATGCCTAT+GGG - tig0016171:39198-39217 Msa1357780:intron 40.0%
TATGGAGGAACATAACCCAT+AGG + tig0016171:39216-39235 None:intergenic 40.0%
GTTCCTCCATATAACGGTTA+TGG - tig0016171:39225-39244 Msa1357780:intron 40.0%
TAGCCATAACCGTTATATGG+AGG + tig0016171:39231-39250 None:intergenic 40.0%
TTGAATGGACGACAGTACTA+TGG + tig0016171:39325-39344 None:intergenic 40.0%
! ATTTTCTCTTGATAGGCTCC+TGG - tig0016171:39459-39478 Msa1357780:intron 40.0%
!! TAACCAGGTTGATTCTGCAT+TGG + tig0016171:39519-39538 None:intergenic 40.0%
! TCATGTGAGGCATCATATTG+TGG + tig0016171:39542-39561 None:intergenic 40.0%
ATGATGCCTCACATGAATCA+AGG - tig0016171:39546-39565 Msa1357780:intron 40.0%
GCATTTCCTTGATTCATGTG+AGG + tig0016171:39555-39574 None:intergenic 40.0%
! TAAGAGCCAACATAACTTGC+AGG + tig0016171:39630-39649 None:intergenic 40.0%
AAGACCTTTGAATAGTCCTC+CGG - tig0016171:39707-39726 Msa1357780:intron 40.0%
!!! GGGGACTCATTTTAGAGTTA+AGG + tig0016171:39941-39960 None:intergenic 40.0%
ACGGTGTTTATGCCAGTTTA+GGG + tig0016171:40074-40093 None:intergenic 40.0%
AACGGTGTTTATGCCAGTTT+AGG + tig0016171:40075-40094 None:intergenic 40.0%
! TATTTTCACTTAGGACCACC+TGG - tig0016171:40237-40256 Msa1357780:intron 40.0%
TAGATAAACAGATTTGCGCC+AGG + tig0016171:40258-40277 None:intergenic 40.0%
GCTAATGCCTTTCAACCATT+TGG - tig0016171:40312-40331 Msa1357780:intron 40.0%
GCACTCAAAACTCTACCAAA+TGG + tig0016171:40330-40349 None:intergenic 40.0%
!! ACCGGTGTTAGCAAATGTTT+TGG - tig0016171:40372-40391 Msa1357780:CDS 40.0%
! TGATGAGAGCTCTCATTTTC+AGG - tig0016171:40451-40470 Msa1357780:CDS 40.0%
! GATGAGAGCTCTCATTTTCA+GGG - tig0016171:40452-40471 Msa1357780:CDS 40.0%
ATGAATGGATGCCAATTAGG+AGG - tig0016171:40523-40542 Msa1357780:exon 40.0%
GTTCATCAGTAAGGTTTACC+GGG + tig0016171:40586-40605 None:intergenic 40.0%
GTCGTCGATGCAAATTGACA+AGG + tig0016171:35850-35869 None:intergenic 45.0%
CTTGGACTCGACATTAATGG+CGG - tig0016171:35951-35970 Msa1357780:CDS 45.0%
! ACACGCATTAACGGCCTTAT+CGG + tig0016171:36285-36304 None:intergenic 45.0%
!! GTGAAACACTAGGGTATTGG+GGG + tig0016171:36595-36614 None:intergenic 45.0%
!! TCGTGTTAGTTCTACTAGGC+TGG - tig0016171:36751-36770 Msa1357780:CDS 45.0%
!! CGTGTTAGTTCTACTAGGCT+GGG - tig0016171:36752-36771 Msa1357780:CDS 45.0%
TAACTGGCAGGTGTCCATAT+AGG - tig0016171:37105-37124 Msa1357780:intron 45.0%
AAAATGGAGCGTGGCCTATA+TGG + tig0016171:37122-37141 None:intergenic 45.0%
! GATGGCGAGTTGGAAAGATT+AGG - tig0016171:37407-37426 Msa1357780:intron 45.0%
! AGCAGCAAGAGCTTGTTCTT+TGG + tig0016171:37827-37846 None:intergenic 45.0%
! AGAACAAGCTCTTGCTGCTT+TGG - tig0016171:37828-37847 Msa1357780:intron 45.0%
! GGAAAGCACAAAATGGAGGT+TGG - tig0016171:37862-37881 Msa1357780:intron 45.0%
CGTTCATGCCATCTTAGTCA+GGG + tig0016171:38251-38270 None:intergenic 45.0%
CCTGACTAAGATGGCATGAA+CGG - tig0016171:38249-38268 Msa1357780:intron 45.0%
TAGGGAACAAACCCACCATT+AGG + tig0016171:38514-38533 None:intergenic 45.0%
TAGGACATTGTTCCACACCT+AGG - tig0016171:38546-38565 Msa1357780:intron 45.0%
! TAACGGGTAAAACCTAGGTG+TGG + tig0016171:38561-38580 None:intergenic 45.0%
GCTCGAACTTGATCCAAGTT+TGG - tig0016171:38600-38619 Msa1357780:intron 45.0%
GGAAAGGGAAAATCAAGCTC+TGG - tig0016171:38621-38640 Msa1357780:CDS 45.0%
GCACAAAGGTTTGTGTGCAT+GGG + tig0016171:38717-38736 None:intergenic 45.0%
TGCACAAAGGTTTGTGTGCA+TGG + tig0016171:38718-38737 None:intergenic 45.0%
!! GTGAAGACTAGTTTGCCAAG+AGG + tig0016171:38876-38895 None:intergenic 45.0%
TGTCTTGTGTTTGCATGACC+TGG - tig0016171:38942-38961 Msa1357780:intron 45.0%
ACTGTGCTTTCTGAGCTCTT+CGG + tig0016171:39137-39156 None:intergenic 45.0%
GGCATGGCTCCAAATAATGA+AGG + tig0016171:39195-39214 None:intergenic 45.0%
AGGAACATAACCCATAGGCA+TGG + tig0016171:39211-39230 None:intergenic 45.0%
TGATAGGCTCCTGGAAGTTA+TGG - tig0016171:39468-39487 Msa1357780:intron 45.0%
GATAGGCTCCTGGAAGTTAT+GGG - tig0016171:39469-39488 Msa1357780:intron 45.0%
GGCATCATATTGTGGTAACC+AGG + tig0016171:39534-39553 None:intergenic 45.0%
! GGAGGCACATGATAGTTTCT+AGG + tig0016171:39609-39628 None:intergenic 45.0%
CAACATCCAATGGCATATCC+TGG - tig0016171:39669-39688 Msa1357780:intron 45.0%
ATTCCTCCAGGATATGCCAT+TGG + tig0016171:39678-39697 None:intergenic 45.0%
CTTGGACTAATCATTCCTCC+AGG + tig0016171:39690-39709 None:intergenic 45.0%
GGAGGACTATTCAAAGGTCT+TGG + tig0016171:39708-39727 None:intergenic 45.0%
AGACCTTTGAATAGTCCTCC+GGG - tig0016171:39708-39727 Msa1357780:intron 45.0%
TCAGGGTCCAGCAAAAATTC+TGG - tig0016171:39774-39793 Msa1357780:intron 45.0%
TCCAGCAAAAATTCTGGTGG+TGG - tig0016171:39780-39799 Msa1357780:intron 45.0%
! ACCACCACCAGAATTTTTGC+TGG + tig0016171:39784-39803 None:intergenic 45.0%
!! GCTGTTAACTAGTGCTGATG+TGG - tig0016171:40011-40030 Msa1357780:intron 45.0%
ATAAACAGATTTGCGCCAGG+TGG + tig0016171:40255-40274 None:intergenic 45.0%
TAGCAGATTGAGCAGCTTCT+GGG + tig0016171:40495-40514 None:intergenic 45.0%
ATAGCAGATTGAGCAGCTTC+TGG + tig0016171:40496-40515 None:intergenic 45.0%
CATAAGAGGGACAACAAACC+CGG - tig0016171:40565-40584 Msa1357780:five_prime_UTR 45.0%
! TTAGTGCCGGAATTGTGGTC+TGG - tig0016171:36957-36976 Msa1357780:CDS 50.0%
GAAGTATGCAGATGGCGAGT+TGG - tig0016171:37397-37416 Msa1357780:CDS 50.0%
!! ACAAGCTCTTGCTGCTTTGG+AGG - tig0016171:37831-37850 Msa1357780:intron 50.0%
!! GCTGCTTTGGAGGCAATCAA+TGG - tig0016171:37841-37860 Msa1357780:intron 50.0%
ATAGAAGGCAAGTGGGCAAC+AGG - tig0016171:38034-38053 Msa1357780:intron 50.0%
CCGTTCATGCCATCTTAGTC+AGG + tig0016171:38252-38271 None:intergenic 50.0%
! TGTGACTGAATGCCGCTTGA+AGG + tig0016171:38390-38409 None:intergenic 50.0%
! GGTGGGTTTGTTCCCTACAA+TGG - tig0016171:38517-38536 Msa1357780:intron 50.0%
CTGTGCTTTCTGAGCTCTTC+GGG + tig0016171:39136-39155 None:intergenic 50.0%
! GGTTGATTCTGCATTGGTGG+CGG + tig0016171:39513-39532 None:intergenic 50.0%
!! CCAGGTTGATTCTGCATTGG+TGG + tig0016171:39516-39535 None:intergenic 50.0%
CCACCAATGCAGAATCAACC+TGG - tig0016171:39513-39532 Msa1357780:intron 50.0%
AATGCATTGCGGCCAGATCT+CGG - tig0016171:39570-39589 Msa1357780:intron 50.0%
TTCATATTGGGGCCGAGATC+TGG + tig0016171:39585-39604 None:intergenic 50.0%
GTGCCTCCTGCAAGTTATGT+TGG - tig0016171:39621-39640 Msa1357780:intron 50.0%
! GAGCCAACATAACTTGCAGG+AGG + tig0016171:39627-39646 None:intergenic 50.0%
CATCCAATGGCATATCCTGG+AGG - tig0016171:39672-39691 Msa1357780:intron 50.0%
GAACCCGGAGGACTATTCAA+AGG + tig0016171:39714-39733 None:intergenic 50.0%
GTTTCACCTTCCGGTGGAAA+TGG - tig0016171:39735-39754 Msa1357780:intron 50.0%
GCAACTCCGCTACATCATCA+GGG - tig0016171:39757-39776 Msa1357780:intron 50.0%
GGGTCCAGCAAAAATTCTGG+TGG - tig0016171:39777-39796 Msa1357780:intron 50.0%
AGCAGATTGAGCAGCTTCTG+GGG + tig0016171:40494-40513 None:intergenic 50.0%
AAAGCTACACGCGCTTCTCG+AGG - tig0016171:36117-36136 Msa1357780:CDS 55.0%
GGCATGAGCCCATAACTTCC+AGG + tig0016171:39480-39499 None:intergenic 55.0%
GCTCTTATCCTGCTGTGCCA+GGG - tig0016171:39643-39662 Msa1357780:intron 55.0%
GCCAGGGCTACAACATCCAA+TGG - tig0016171:39659-39678 Msa1357780:intron 55.0%
GCCATTGGATGTTGTAGCCC+TGG + tig0016171:39663-39682 None:intergenic 55.0%
GAAGGTGAAACAGAACCCGG+AGG + tig0016171:39726-39745 None:intergenic 55.0%
CCGGAAGGTGAAACAGAACC+CGG + tig0016171:39729-39748 None:intergenic 55.0%
CCGGGTTCTGTTTCACCTTC+CGG - tig0016171:39726-39745 Msa1357780:intron 55.0%
GGTTCTGTTTCACCTTCCGG+TGG - tig0016171:39729-39748 Msa1357780:intron 55.0%
! GAGTTGCCATTTCCACCGGA+AGG + tig0016171:39744-39763 None:intergenic 55.0%
! AGCGGAGTTGCCATTTCCAC+CGG + tig0016171:39748-39767 None:intergenic 55.0%
GGCAACTCCGCTACATCATC+AGG - tig0016171:39756-39775 Msa1357780:intron 55.0%
! GCTGGACCCTGATGATGTAG+CGG + tig0016171:39766-39785 None:intergenic 55.0%
!! TCTGGTGGTGGTCAAGCTGA+AGG - tig0016171:39792-39811 Msa1357780:intron 55.0%
!! ATTGGTGGCGGCATGCGGTA+CGG + tig0016171:39501-39520 None:intergenic 60.0%
!! TCTGCATTGGTGGCGGCATG+CGG + tig0016171:39506-39525 None:intergenic 60.0%
GGCTCTTATCCTGCTGTGCC+AGG - tig0016171:39642-39661 Msa1357780:intron 60.0%
TGTTGTAGCCCTGGCACAGC+AGG + tig0016171:39654-39673 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0016171 gene 35764 40735 35764 ID=Msa1357780;Name=Msa1357780
tig0016171 mRNA 35764 40735 35764 ID=Msa1357780-mRNA-1;Parent=Msa1357780;Name=Msa1357780-mRNA-1;_AED=0.03;_eAED=0.03;_QI=203|0.87|0.88|1|1|1|9|135|434
tig0016171 exon 35764 36026 35764 ID=Msa1357780-mRNA-1:exon:10500;Parent=Msa1357780-mRNA-1
tig0016171 exon 36106 36249 36106 ID=Msa1357780-mRNA-1:exon:10499;Parent=Msa1357780-mRNA-1
tig0016171 exon 36686 37025 36686 ID=Msa1357780-mRNA-1:exon:10498;Parent=Msa1357780-mRNA-1
tig0016171 exon 37245 37421 37245 ID=Msa1357780-mRNA-1:exon:10497;Parent=Msa1357780-mRNA-1
tig0016171 exon 38620 38702 38620 ID=Msa1357780-mRNA-1:exon:10496;Parent=Msa1357780-mRNA-1
tig0016171 exon 38806 38931 38806 ID=Msa1357780-mRNA-1:exon:10495;Parent=Msa1357780-mRNA-1
tig0016171 exon 39071 39122 39071 ID=Msa1357780-mRNA-1:exon:10494;Parent=Msa1357780-mRNA-1
tig0016171 exon 40171 40253 40171 ID=Msa1357780-mRNA-1:exon:10493;Parent=Msa1357780-mRNA-1
tig0016171 exon 40361 40735 40361 ID=Msa1357780-mRNA-1:exon:10492;Parent=Msa1357780-mRNA-1
tig0016171 five_prime_UTR 40533 40735 40533 ID=Msa1357780-mRNA-1:five_prime_utr;Parent=Msa1357780-mRNA-1
tig0016171 CDS 40361 40532 40361 ID=Msa1357780-mRNA-1:cds;Parent=Msa1357780-mRNA-1
tig0016171 CDS 40171 40253 40171 ID=Msa1357780-mRNA-1:cds;Parent=Msa1357780-mRNA-1
tig0016171 CDS 39071 39122 39071 ID=Msa1357780-mRNA-1:cds;Parent=Msa1357780-mRNA-1
tig0016171 CDS 38806 38931 38806 ID=Msa1357780-mRNA-1:cds;Parent=Msa1357780-mRNA-1
tig0016171 CDS 38620 38702 38620 ID=Msa1357780-mRNA-1:cds;Parent=Msa1357780-mRNA-1
tig0016171 CDS 37245 37421 37245 ID=Msa1357780-mRNA-1:cds;Parent=Msa1357780-mRNA-1
tig0016171 CDS 36686 37025 36686 ID=Msa1357780-mRNA-1:cds;Parent=Msa1357780-mRNA-1
tig0016171 CDS 36106 36249 36106 ID=Msa1357780-mRNA-1:cds;Parent=Msa1357780-mRNA-1
tig0016171 CDS 35899 36026 35899 ID=Msa1357780-mRNA-1:cds;Parent=Msa1357780-mRNA-1
tig0016171 three_prime_UTR 35764 35898 35764 ID=Msa1357780-mRNA-1:three_prime_utr;Parent=Msa1357780-mRNA-1
Gene Sequence

>Msa1357780

ATGGCGGAAACAAAGGAAGAGAGTAAATCTAACAACGAAGAAAGTGTGAAATTGTTCGTAGGTCAAGTACCGAAACACATGACGGAAGATGAGTTACTTACATTGTTCAAAGAATTTGCTATAGTTGACGAAGTCAACATCATCAAAGACAAAGCTACACGCGCTTCTCGAGGTTGTTGTTTCGTGATTTGTCCTTCTAGAGATGAAGCCGATAAGGCCGTTAATGCGTGTCACAATAAGAAAACATTACCGGGGGCATCTAGTCCATTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAACATTTCTGAAGTTGAAGTATCTGCACTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTTAAGAGGTTCTCAACAGACAAGTAAAGTAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAAGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCACAAAATGGAGGGTTCAAGTGTTCCCTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCCCGAAGAGCTCAGAAAGCACAGTCTCAAGCTTCTAATGTGGGACATGATTCTCAGCATCCTTCATTATTTGGAGCCATGCCTATGGGTTATGTTCCTCCATATAACGGTTATGGCTATCAGGCTCCTGGAAGTTATGGGCTCATGCCGTACCGCATGCCGCCACCAATGCAGAATCAACCTGGTTACCACAATATGATGCCTCACATGAATCAAGGAAATGCATTGCGGCCAGATCTCGGCCCCAATATGAATCCTAGAAACTATCATGTGCCTCCTGCAAGTTATGTTGGCTCTTATCCTGCTGTGCCAGGGCTACAACATCCAATGGCATATCCTGGAGGAATGATTAGTCCAAGACCTTTGAATAGTCCTCCGGGTTCTGTTTCACCTTCCGGTGGAAATGGCAACTCCGCTACATCATCAGGGTCCAGCAAAAATTCTGGTGGTGGTCAAGCTGAAGGACCACCTGGCGCAAATCTGTTTATCTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTAATGCCTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGACAAAGCAACCGGTGTTAGCAAATGTTTTGGGTTTGTAAGTTATGATTCCCCAGAAGCTGCTCAATCTGCTATTAGTATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTTCAGCATAAGAGGGACAACAAACCCGGTAAACCTTACTGA
Protein sequence

>Msa1357780

MAETKEESKSNNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSALFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVGHDSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRMPPPMQNQPGYHNMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVGSYPAVPGLQHPMAYPGGMISPRPLNSPPGSVSPSGGNGNSATSSGSSKNSGGGQAEGPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQHKRDNKPGKPY*