Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358270 | XP_003611082.1 | 96.868 | 479 | 15 | 0 | 199 | 677 | 118 | 596 | 0.0 | 968 |
| Msa1358270 | XP_003611082.1 | 99.187 | 123 | 1 | 0 | 1 | 123 | 1 | 123 | 9.15e-71 | 252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358270 | G7KC24 | 96.868 | 479 | 15 | 0 | 199 | 677 | 118 | 596 | 0.0 | 968 |
| Msa1358270 | G7KC24 | 99.187 | 123 | 1 | 0 | 1 | 123 | 1 | 123 | 4.37e-71 | 252 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0828680 | Msa1358270 | 0.814076 | 1.851660e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358270 | MtrunA17_Chr5g0397411 | 96.868 | 479 | 15 | 0 | 199 | 677 | 118 | 596 | 0.0 | 968 |
| Msa1358270 | MtrunA17_Chr5g0397411 | 99.187 | 123 | 1 | 0 | 1 | 123 | 1 | 123 | 8.42e-75 | 252 |
| Msa1358270 | MtrunA17_Chr8g0386831 | 62.839 | 479 | 156 | 7 | 199 | 675 | 121 | 579 | 0.0 | 585 |
| Msa1358270 | MtrunA17_Chr8g0386831 | 58.268 | 127 | 48 | 2 | 1 | 123 | 1 | 126 | 1.78e-30 | 126 |
| Msa1358270 | MtrunA17_Chr8g0386841 | 63.109 | 431 | 155 | 3 | 198 | 627 | 98 | 525 | 1.44e-180 | 524 |
| Msa1358270 | MtrunA17_Chr8g0386841 | 49.020 | 102 | 44 | 2 | 29 | 129 | 16 | 110 | 5.47e-18 | 87.8 |
| Msa1358270 | MtrunA17_Chr6g0474401 | 42.667 | 300 | 99 | 4 | 204 | 503 | 31 | 257 | 5.20e-70 | 229 |
| Msa1358270 | MtrunA17_Chr6g0451341 | 38.776 | 98 | 57 | 2 | 220 | 317 | 81 | 175 | 2.27e-13 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358270 | AT4G11560.1 | 56.152 | 447 | 169 | 6 | 199 | 643 | 149 | 570 | 3.69e-168 | 494 |
| Msa1358270 | AT4G11560.1 | 36.774 | 155 | 64 | 3 | 1 | 123 | 2 | 154 | 3.60e-20 | 95.5 |
| Msa1358270 | AT4G11560.2 | 56.742 | 356 | 135 | 5 | 199 | 552 | 149 | 487 | 5.65e-132 | 398 |
| Msa1358270 | AT4G11560.2 | 36.774 | 155 | 64 | 3 | 1 | 123 | 2 | 154 | 2.77e-20 | 95.1 |
| Msa1358270 | AT2G25120.1 | 37.415 | 294 | 118 | 5 | 214 | 507 | 130 | 357 | 1.33e-48 | 175 |
| Msa1358270 | AT2G25120.1 | 40.708 | 113 | 63 | 2 | 12 | 123 | 10 | 119 | 4.92e-11 | 65.5 |
| Msa1358270 | AT4G23120.1 | 36.860 | 293 | 125 | 5 | 212 | 503 | 90 | 323 | 1.70e-47 | 172 |
| Msa1358270 | AT4G23120.1 | 58.621 | 58 | 22 | 2 | 67 | 123 | 25 | 81 | 1.28e-11 | 67.4 |
| Msa1358270 | AT3G43990.1 | 52.137 | 117 | 56 | 0 | 212 | 328 | 116 | 232 | 7.96e-33 | 130 |
| Msa1358270 | AT3G43990.1 | 58.333 | 60 | 24 | 1 | 65 | 123 | 48 | 107 | 1.24e-14 | 76.6 |
| Msa1358270 | AT3G48050.1 | 40.336 | 119 | 68 | 2 | 199 | 317 | 68 | 183 | 2.12e-19 | 94.0 |
| Msa1358270 | AT3G48050.2 | 40.336 | 119 | 68 | 2 | 199 | 317 | 68 | 183 | 2.12e-19 | 94.0 |
| Msa1358270 | AT3G48060.1 | 40.336 | 119 | 68 | 2 | 199 | 317 | 68 | 183 | 2.25e-19 | 94.0 |
| Msa1358270 | AT3G48060.3 | 40.336 | 119 | 68 | 2 | 199 | 317 | 68 | 183 | 2.25e-19 | 94.0 |
| Msa1358270 | AT3G48060.2 | 40.336 | 119 | 68 | 2 | 199 | 317 | 69 | 184 | 2.25e-19 | 94.0 |
Find 174 sgRNAs with CRISPR-Local
Find 405 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAACATTGTCATCTTTCT+TGG | 0.116362 | tig0016220:-470924 | None:intergenic |
| TGGGCTTGCCAAATGACTTC+TGG | 0.171692 | tig0016220:-470904 | None:intergenic |
| GGTGAACCACTTAGGGTTTC+GGG | 0.213398 | tig0016220:+466111 | Msa1358270:CDS |
| TATGACACCCATTGAATTAA+AGG | 0.227423 | tig0016220:+469438 | Msa1358270:CDS |
| ACACAACTCCCAGGTGTTTC+AGG | 0.232493 | tig0016220:-468257 | None:intergenic |
| TTTCTCATCAGGCTCCTTCT+TGG | 0.255962 | tig0016220:-470372 | None:intergenic |
| GTAAATTTCAATGCACTAAC+TGG | 0.263561 | tig0016220:+468311 | Msa1358270:CDS |
| TACGAATCGTTTGAGTTTGA+TGG | 0.267511 | tig0016220:+466159 | Msa1358270:CDS |
| AATCTAATTGCCGCAACTTT+TGG | 0.277842 | tig0016220:-468775 | None:intergenic |
| TCCTCGGGCACAAGCATTAC+AGG | 0.282002 | tig0016220:-466281 | None:intergenic |
| TTCCTTATCAGCCTGTCTTT+TGG | 0.290673 | tig0016220:-470948 | None:intergenic |
| AAGATTGGTACTCTTATATA+TGG | 0.298881 | tig0016220:-465580 | None:intergenic |
| CGGGAGGAGGTTCAAGGCGG+TGG | 0.305419 | tig0016220:+467440 | Msa1358270:CDS |
| CTAGCACGCCGTCTGTTAAA+TGG | 0.309640 | tig0016220:+469388 | Msa1358270:CDS |
| ACTTGCAGACAGTGATCTTT+TGG | 0.309695 | tig0016220:+471063 | Msa1358270:three_prime_UTR |
| GCTCTCCCCTCTTTAATTAT+CGG | 0.310734 | tig0016220:+467172 | Msa1358270:CDS |
| AGAAGCCCCTCCTGCTGTTC+AGG | 0.311627 | tig0016220:+468130 | Msa1358270:CDS |
| CTCTCCCCTCTTTAATTATC+GGG | 0.312189 | tig0016220:+467173 | Msa1358270:CDS |
| TGGTGAACCACTTAGGGTTT+CGG | 0.317025 | tig0016220:+466110 | Msa1358270:CDS |
| AGGTTCAAGGCGGCGGGAGG+AGG | 0.326138 | tig0016220:+467427 | Msa1358270:CDS |
| TGAACCATCTATTCCTGATT+TGG | 0.330530 | tig0016220:+470877 | Msa1358270:CDS |
| ATCTCGTACCTTTAATTCAA+TGG | 0.344360 | tig0016220:-469446 | None:intergenic |
| TGCAATTAACACTACCCTTT+AGG | 0.347302 | tig0016220:-471087 | None:intergenic |
| TCAACATTGTCATCTTTCTT+GGG | 0.347350 | tig0016220:-470923 | None:intergenic |
| GATAGTACAGAAAAGGAAAA+AGG | 0.351330 | tig0016220:+468401 | Msa1358270:CDS |
| TACTAATTTACCCTTGGGTC+AGG | 0.351758 | tig0016220:+465758 | Msa1358270:five_prime_UTR |
| TGCGAAGGAAGAAGAGAAAA+AGG | 0.356657 | tig0016220:+466053 | Msa1358270:CDS |
| TGCATGTGTTGTTTCTCATC+AGG | 0.363326 | tig0016220:-470383 | None:intergenic |
| GACTTCTGGGCGGCCAAATC+AGG | 0.367390 | tig0016220:-470890 | None:intergenic |
| TTCAAGATGCACAGATTCTA+AGG | 0.369703 | tig0016220:+470511 | Msa1358270:CDS |
| CAAGCTCGTCAATTTCTTGC+TGG | 0.369834 | tig0016220:-468058 | None:intergenic |
| GGGCTTGCCAAATGACTTCT+GGG | 0.374683 | tig0016220:-470903 | None:intergenic |
| TTTAATTATCGGGGATCTCC+TGG | 0.380059 | tig0016220:+467183 | Msa1358270:CDS |
| CCAGGATGTTGCTTACGTTT+CGG | 0.380998 | tig0016220:-467957 | None:intergenic |
| CCACTTAGGGTTTCGGGAAA+AGG | 0.385800 | tig0016220:+466117 | Msa1358270:CDS |
| ACAGCAGGAGGGGCTTCTTC+AGG | 0.386675 | tig0016220:-468125 | None:intergenic |
| TTGGCCGCCCAGAAGTCATT+TGG | 0.395640 | tig0016220:+470896 | Msa1358270:CDS |
| ACCTTGATTATAGCAACATA+TGG | 0.401609 | tig0016220:-466317 | None:intergenic |
| CGAATTCGATATCGAATCTC+AGG | 0.406499 | tig0016220:+467328 | Msa1358270:CDS |
| TATCTGTTTCCAAGCGTTGC+TGG | 0.406534 | tig0016220:+467352 | Msa1358270:CDS |
| AGGTTCAAGGCGGTGGGCTA+CGG | 0.407444 | tig0016220:+467447 | Msa1358270:CDS |
| GTGTTGCCTGTGGTAATTCC+TGG | 0.411316 | tig0016220:+470687 | Msa1358270:CDS |
| ATCGTTATTGCTATTGTCGT+TGG | 0.415419 | tig0016220:-466025 | None:intergenic |
| GCCGATTGGTGAACCACTTA+GGG | 0.420572 | tig0016220:+466104 | Msa1358270:CDS |
| CCAATCGGCTTTGCATCCTC+TGG | 0.421294 | tig0016220:-466090 | None:intergenic |
| GACATTATACAGTACTTTAG+TGG | 0.426230 | tig0016220:+467753 | Msa1358270:CDS |
| CTCCTCCCTTGAAACATCAA+TGG | 0.427461 | tig0016220:-468201 | None:intergenic |
| ATGGCTGAAACAGCAGCATC+TGG | 0.436363 | tig0016220:-468695 | None:intergenic |
| GGGAGGTTCAAGGCGGCGGG+AGG | 0.438487 | tig0016220:+467424 | Msa1358270:CDS |
| GACAGTTACTAATTTACCCT+TGG | 0.440433 | tig0016220:+465752 | Msa1358270:five_prime_UTR |
| TTTGCATCCTCTGGAGTTTG+AGG | 0.446276 | tig0016220:-466081 | None:intergenic |
| TTTCTCCCATTGATGTTTCA+AGG | 0.450822 | tig0016220:+468195 | Msa1358270:CDS |
| CATTGGGAGGTTCAAGGCGG+CGG | 0.455699 | tig0016220:+467420 | Msa1358270:CDS |
| CTCATCACGGGAGGCATACC+AGG | 0.460341 | tig0016220:-470705 | None:intergenic |
| ACAGTTACTAATTTACCCTT+GGG | 0.462300 | tig0016220:+465753 | Msa1358270:five_prime_UTR |
| GTTGCAATTTGTTTACTTTG+AGG | 0.467805 | tig0016220:+470995 | Msa1358270:three_prime_UTR |
| TCTCGTACCTTTAATTCAAT+GGG | 0.468552 | tig0016220:-469445 | None:intergenic |
| AGAAATAGCAAATGACTCTC+AGG | 0.469188 | tig0016220:+468478 | Msa1358270:CDS |
| ACTCCCAGGTGTTTCAGGCT+TGG | 0.469894 | tig0016220:-468252 | None:intergenic |
| TTTCGGAAACTGTTTGTTCA+AGG | 0.470021 | tig0016220:-467940 | None:intergenic |
| CCGATGAAAGTAACGATGTT+GGG | 0.470469 | tig0016220:+467214 | Msa1358270:CDS |
| ACCCTAAGTGGTTCACCAAT+CGG | 0.471373 | tig0016220:-466105 | None:intergenic |
| CATTCCAAGCCTGAAACACC+TGG | 0.472142 | tig0016220:+468248 | Msa1358270:CDS |
| GATGACCTCTCTAAGAAAAC+AGG | 0.475849 | tig0016220:+470854 | Msa1358270:CDS |
| GTGTTTCAGGCTTGGAATGT+TGG | 0.476316 | tig0016220:-468244 | None:intergenic |
| TGCACTGACTATAGATGCAT+TGG | 0.478506 | tig0016220:+470733 | Msa1358270:CDS |
| AGGCGGCGGGAGGAGGTTCA+AGG | 0.482138 | tig0016220:+467434 | Msa1358270:CDS |
| GGCCAAAAGACAGGCTGATA+AGG | 0.483360 | tig0016220:+470946 | Msa1358270:CDS |
| GTCATGTCCTCCTGAACAGC+AGG | 0.484994 | tig0016220:-468140 | None:intergenic |
| TCCTCCCTTGAAACATCAAT+GGG | 0.486319 | tig0016220:-468200 | None:intergenic |
| CCCAACATCGTTACTTTCAT+CGG | 0.486683 | tig0016220:-467214 | None:intergenic |
| ATTGGGAGGTTCAAGGCGGC+GGG | 0.487683 | tig0016220:+467421 | Msa1358270:CDS |
| ATCTGTGCATCTTGAACAGC+GGG | 0.489230 | tig0016220:-470504 | None:intergenic |
| GAAACATTCATCGTGACAAA+TGG | 0.489869 | tig0016220:+468333 | Msa1358270:CDS |
| AGATTCTAAGGTGGGCTTGA+GGG | 0.491645 | tig0016220:+470523 | Msa1358270:CDS |
| AGGGTTTCGGGAAAAGGAAG+AGG | 0.492508 | tig0016220:+466123 | Msa1358270:CDS |
| TAATGATGATAGTACAGAAA+AGG | 0.495563 | tig0016220:+468394 | Msa1358270:CDS |
| AGCCGATTGGTGAACCACTT+AGG | 0.495797 | tig0016220:+466103 | Msa1358270:CDS |
| ACCATATGTTGCTATAATCA+AGG | 0.496977 | tig0016220:+466316 | Msa1358270:CDS |
| GTCTTCTTCGTCATCACTTG+TGG | 0.500496 | tig0016220:-465920 | None:intergenic |
| ATTATCAGTCCAGCAACGCT+TGG | 0.501454 | tig0016220:-467361 | None:intergenic |
| GTACTTTAGTGGCAGCATAA+TGG | 0.504494 | tig0016220:+467764 | Msa1358270:CDS |
| TCTTCCTAGTGTCAATTTCG+AGG | 0.507867 | tig0016220:+465668 | Msa1358270:five_prime_UTR |
| GCGGCCAAATCAGGAATAGA+TGG | 0.511799 | tig0016220:-470881 | None:intergenic |
| TCCGATGAAAGTAACGATGT+TGG | 0.513347 | tig0016220:+467213 | Msa1358270:CDS |
| GTCCTCCTGAACAGCAGGAG+GGG | 0.521044 | tig0016220:-468135 | None:intergenic |
| CTTCCTAGTGTCAATTTCGA+GGG | 0.523365 | tig0016220:+465669 | Msa1358270:five_prime_UTR |
| CATTGATGTTTCAAGGGAGG+AGG | 0.524697 | tig0016220:+468202 | Msa1358270:CDS |
| CAATGTTGAGGCCAAAAGAC+AGG | 0.525748 | tig0016220:+470937 | Msa1358270:CDS |
| ACAAAGGGTGTATGACACTT+TGG | 0.526883 | tig0016220:+467989 | Msa1358270:CDS |
| TTCTCCCATTGATGTTTCAA+GGG | 0.527106 | tig0016220:+468196 | Msa1358270:CDS |
| TCGGGTTGATCAATCAAGAT+TGG | 0.527965 | tig0016220:-465595 | None:intergenic |
| AGCTTTGAATGCTGAGGTGG+CGG | 0.528450 | tig0016220:-465952 | None:intergenic |
| GCTGACTGATAAGGACTATG+AGG | 0.528522 | tig0016220:+468028 | Msa1358270:CDS |
| GTGCCACATTGGGAGGTTCA+AGG | 0.528648 | tig0016220:+467414 | Msa1358270:CDS |
| CCGAAACGTAAGCAACATCC+TGG | 0.530479 | tig0016220:+467957 | Msa1358270:CDS |
| TCCTGGCTTCATCGTACAAA+GGG | 0.531256 | tig0016220:+467974 | Msa1358270:CDS |
| GGGAGGAGGTTCAAGGCGGT+GGG | 0.531635 | tig0016220:+467441 | Msa1358270:CDS |
| GCTGGAAATCGTGTGATACA+AGG | 0.532037 | tig0016220:+467841 | Msa1358270:CDS |
| TTGTGTGAGAAATGGTGAAT+CGG | 0.535101 | tig0016220:+465881 | Msa1358270:exon |
| CTCTCAGGACAAGGGTCAGA+AGG | 0.536064 | tig0016220:+468493 | Msa1358270:CDS |
| ACACTTTGGAAAGGAAACTC+TGG | 0.538265 | tig0016220:+468003 | Msa1358270:CDS |
| TCCTGTAATGCTTGTGCCCG+AGG | 0.539570 | tig0016220:+466280 | Msa1358270:CDS |
| CGAAGCTTTGAATGCTGAGG+TGG | 0.540004 | tig0016220:-465955 | None:intergenic |
| CATTCATCGTGACAAATGGT+TGG | 0.542257 | tig0016220:+468337 | Msa1358270:CDS |
| TTCGGAAACTGTTTGTTCAA+GGG | 0.542344 | tig0016220:-467939 | None:intergenic |
| TGGACATGATGACCGTTACC+AGG | 0.543675 | tig0016220:+470559 | Msa1358270:CDS |
| CAAACAATTTGACTCACGAC+AGG | 0.543963 | tig0016220:-465826 | None:intergenic |
| CAAAGCGGTTGTGTGAGAAA+TGG | 0.546915 | tig0016220:+465873 | Msa1358270:exon |
| TGAAGATGTTCAGAAGAAGC+TGG | 0.546919 | tig0016220:+470802 | Msa1358270:CDS |
| GGTGAATCGGCGCTTCACTC+AGG | 0.550988 | tig0016220:+465894 | Msa1358270:CDS |
| AGTGGCAGCATAATGGTGGC+TGG | 0.555599 | tig0016220:+467771 | Msa1358270:CDS |
| ACCCTTTGTACGATGAAGCC+AGG | 0.557212 | tig0016220:-467975 | None:intergenic |
| CCAGAGGATGCAAAGCCGAT+TGG | 0.557621 | tig0016220:+466090 | Msa1358270:CDS |
| AGCCCCTCCTGCTGTTCAGG+AGG | 0.557713 | tig0016220:+468133 | Msa1358270:CDS |
| ACTAATTTACCCTTGGGTCA+GGG | 0.559698 | tig0016220:+465759 | Msa1358270:five_prime_UTR |
| ACTCTGGAAGCTGACTGATA+AGG | 0.564232 | tig0016220:+468019 | Msa1358270:CDS |
| CGGCGGGAGGAGGTTCAAGG+CGG | 0.566312 | tig0016220:+467437 | Msa1358270:CDS |
| TCCCATTGATGTTTCAAGGG+AGG | 0.569045 | tig0016220:+468199 | Msa1358270:CDS |
| CAGATTCTAAGGTGGGCTTG+AGG | 0.569209 | tig0016220:+470522 | Msa1358270:CDS |
| GAGATCCCCGATAATTAAAG+AGG | 0.570399 | tig0016220:-467179 | None:intergenic |
| AGATGCACAGATTCTAAGGT+GGG | 0.570619 | tig0016220:+470515 | Msa1358270:CDS |
| TCAACTCTCCATTTAACAGA+CGG | 0.574437 | tig0016220:-469396 | None:intergenic |
| TTTGAATGCTGAGGTGGCGG+TGG | 0.576736 | tig0016220:-465949 | None:intergenic |
| CAGTGCAGACACCTCATCAC+GGG | 0.577028 | tig0016220:-470717 | None:intergenic |
| AGCAAATGACTCTCAGGACA+AGG | 0.577134 | tig0016220:+468484 | Msa1358270:CDS |
| TGTTTATTAACGATTTCGAA+AGG | 0.581027 | tig0016220:-471156 | None:intergenic |
| TTGAGGGAGATTATCCATGC+TGG | 0.591322 | tig0016220:+470539 | Msa1358270:CDS |
| GGGTTTCGGGAAAAGGAAGA+GGG | 0.591686 | tig0016220:+466124 | Msa1358270:CDS |
| TCAGGAGGGTTTGACTGCTG+AGG | 0.593688 | tig0016220:+470343 | Msa1358270:intron |
| AAAAGATGTGCCACATTGGG+AGG | 0.594262 | tig0016220:+467407 | Msa1358270:CDS |
| CAATAACGATAGCGATGCGA+AGG | 0.594367 | tig0016220:+466038 | Msa1358270:CDS |
| TTATGCATAACAGACTCTGC+AGG | 0.595127 | tig0016220:-467897 | None:intergenic |
| AACGGTCATCATGTCCAGCA+TGG | 0.596432 | tig0016220:-470553 | None:intergenic |
| TCTCCCCTCTTTAATTATCG+GGG | 0.599713 | tig0016220:+467174 | Msa1358270:CDS |
| GAATCGGCGCTTCACTCAGG+TGG | 0.600311 | tig0016220:+465897 | Msa1358270:CDS |
| CAGAAAACTGTAAAACGCAT+CGG | 0.600560 | tig0016220:+468083 | Msa1358270:CDS |
| ATCTGGCCACACAAAAGACT+CGG | 0.601764 | tig0016220:-468678 | None:intergenic |
| AGATCCCCGATAATTAAAGA+GGG | 0.602753 | tig0016220:-467178 | None:intergenic |
| ATGTCCTCCTGAACAGCAGG+AGG | 0.605044 | tig0016220:-468137 | None:intergenic |
| TAGATTGAGACCCTGACCCA+AGG | 0.605310 | tig0016220:-465769 | None:intergenic |
| TTTCGGGAAAAGGAAGAGGG+AGG | 0.606566 | tig0016220:+466127 | Msa1358270:CDS |
| ATCGTGACAAATGGTTGGAG+AGG | 0.607774 | tig0016220:+468342 | Msa1358270:CDS |
| GATAATTAAAGAGGGGAGAG+CGG | 0.611379 | tig0016220:-467170 | None:intergenic |
| GATGTTTCAAGGGAGGAGGA+AGG | 0.612495 | tig0016220:+468206 | Msa1358270:CDS |
| ATCCTGGCTTCATCGTACAA+AGG | 0.616688 | tig0016220:+467973 | Msa1358270:CDS |
| CTGGTATGCCTCCCGTGATG+AGG | 0.618696 | tig0016220:+470706 | Msa1358270:CDS |
| GGCATACCAGGAATTACCAC+AGG | 0.621637 | tig0016220:-470693 | None:intergenic |
| TTGCGAAGCTTTGAATGCTG+AGG | 0.622899 | tig0016220:-465958 | None:intergenic |
| CTGGAAATCGTGTGATACAA+GGG | 0.627041 | tig0016220:+467842 | Msa1358270:CDS |
| CAGCTGGAATGTGTTGCCTG+TGG | 0.628082 | tig0016220:+470677 | Msa1358270:intron |
| CTTTAGTGGCAGCATAATGG+TGG | 0.630836 | tig0016220:+467767 | Msa1358270:CDS |
| AGATTGAGACCCTGACCCAA+GGG | 0.630992 | tig0016220:-465768 | None:intergenic |
| TGTCCTCCTGAACAGCAGGA+GGG | 0.631508 | tig0016220:-468136 | None:intergenic |
| GGGTGTATGACACTTTGGAA+AGG | 0.632035 | tig0016220:+467994 | Msa1358270:CDS |
| GCATAATGGTGGCTGGACAG+TGG | 0.638281 | tig0016220:+467778 | Msa1358270:CDS |
| CAAGAAAGATGACAATGTTG+AGG | 0.639737 | tig0016220:+470925 | Msa1358270:CDS |
| AATCCCTCGAAATTGACACT+AGG | 0.646260 | tig0016220:-465672 | None:intergenic |
| AATCTGTGCATCTTGAACAG+CGG | 0.647782 | tig0016220:-470505 | None:intergenic |
| AGAAGTATAACCAAAAGTTG+CGG | 0.649597 | tig0016220:+468765 | Msa1358270:CDS |
| TCAGTGCAGACACCTCATCA+CGG | 0.650238 | tig0016220:-470718 | None:intergenic |
| ACTCTGCAGGAACCTCATCA+CGG | 0.657979 | tig0016220:-467884 | None:intergenic |
| CCGCCTTGAACCTCCCAATG+TGG | 0.658416 | tig0016220:-467417 | None:intergenic |
| GTCTGTTATGCATAAGTGTG+TGG | 0.658812 | tig0016220:+467905 | Msa1358270:CDS |
| AAGATGCACAGATTCTAAGG+TGG | 0.659421 | tig0016220:+470514 | Msa1358270:CDS |
| TCATTATTAACACAACTCCC+AGG | 0.665992 | tig0016220:-468266 | None:intergenic |
| TGCAGACACCTCATCACGGG+AGG | 0.667878 | tig0016220:-470714 | None:intergenic |
| GCAAATGACTCTCAGGACAA+GGG | 0.672703 | tig0016220:+468485 | Msa1358270:CDS |
| GATCCCCGATAATTAAAGAG+GGG | 0.694677 | tig0016220:-467177 | None:intergenic |
| CCACATTGGGAGGTTCAAGG+CGG | 0.698286 | tig0016220:+467417 | Msa1358270:CDS |
| ATTCCAAGCCTGAAACACCT+GGG | 0.701124 | tig0016220:+468249 | Msa1358270:CDS |
| GGATTCGCCTCAAACTCCAG+AGG | 0.710400 | tig0016220:+466074 | Msa1358270:CDS |
| CTTGCCAAATGACTTCTGGG+CGG | 0.738628 | tig0016220:-470900 | None:intergenic |
| ACAGTGAGAACAATTCAAAG+CGG | 0.739093 | tig0016220:+465858 | Msa1358270:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTATAATTGTTTCAA+GGG | - | tig0016220:468846-468865 | None:intergenic | 10.0% |
| !! | TAATAATTATAATTGTTTCA+AGG | - | tig0016220:468847-468866 | None:intergenic | 10.0% |
| !! | ATAAATTTATATTTATGTCT+AGG | + | tig0016220:468951-468970 | Msa1358270:intron | 10.0% |
| !!! | TATTTTAGAAAATATTAAGT+TGG | + | tig0016220:469731-469750 | Msa1358270:intron | 10.0% |
| !! | GTAAAAAACAAATATTGATA+AGG | - | tig0016220:467656-467675 | None:intergenic | 15.0% |
| !!! | TCATTTTATATTGATAAGTC+GGG | - | tig0016220:465616-465635 | None:intergenic | 20.0% |
| !!! | GTCATTTTATATTGATAAGT+CGG | - | tig0016220:465617-465636 | None:intergenic | 20.0% |
| !!! | TTTATTTTGAGCTAAGTAAA+TGG | + | tig0016220:465699-465718 | Msa1358270:five_prime_UTR | 20.0% |
| !!! | TTATTTTGAGCTAAGTAAAT+GGG | + | tig0016220:465700-465719 | Msa1358270:five_prime_UTR | 20.0% |
| !!! | CTAATTGTGATTTAGAATTA+GGG | + | tig0016220:466355-466374 | Msa1358270:intron | 20.0% |
| !! | TTATAGAATGATTGAACATT+TGG | + | tig0016220:466424-466443 | Msa1358270:intron | 20.0% |
| !!! | TAGCAAACAAATTTTTGATA+GGG | - | tig0016220:466523-466542 | None:intergenic | 20.0% |
| !!! | TTAGCAAACAAATTTTTGAT+AGG | - | tig0016220:466524-466543 | None:intergenic | 20.0% |
| !!! | AAAAATAGATCTGATTTGTA+TGG | + | tig0016220:467242-467261 | Msa1358270:intron | 20.0% |
| !!! | TGATTTTCGATTTGTATTAT+TGG | + | tig0016220:467285-467304 | Msa1358270:intron | 20.0% |
| !!! | GATTTTCGATTTGTATTATT+GGG | + | tig0016220:467286-467305 | Msa1358270:intron | 20.0% |
| !! | GGCAAAAAAAAAAAATTTGA+GGG | - | tig0016220:467566-467585 | None:intergenic | 20.0% |
| !! | TGGCAAAAAAAAAAAATTTG+AGG | - | tig0016220:467567-467586 | None:intergenic | 20.0% |
| !! | CAAAAAATAAAAGAAGCTTA+AGG | + | tig0016220:468162-468181 | Msa1358270:CDS | 20.0% |
| !! | ATAAATTCATATACTCCTTA+AGG | - | tig0016220:468585-468604 | None:intergenic | 20.0% |
| !! | AATTTATATTTATGTCTAGG+AGG | + | tig0016220:468954-468973 | Msa1358270:intron | 20.0% |
| !! | TTAATGTCATTGAAAAGAAA+GGG | + | tig0016220:469119-469138 | Msa1358270:intron | 20.0% |
| !! | TGGTAAAGTTATAAATAAGA+GGG | - | tig0016220:469177-469196 | None:intergenic | 20.0% |
| !! | ATGGTAAAGTTATAAATAAG+AGG | - | tig0016220:469178-469197 | None:intergenic | 20.0% |
| !!! | GTCATATTCAAAATTTTAGA+AGG | - | tig0016220:469424-469443 | None:intergenic | 20.0% |
| !!! | GTATTTTCTAAAATGTTCAA+TGG | + | tig0016220:469481-469500 | Msa1358270:intron | 20.0% |
| !! | TAGGATAAAGAAATAATCAA+AGG | - | tig0016220:469659-469678 | None:intergenic | 20.0% |
| !!! | GTATATTCATTTCTTTTAGT+AGG | - | tig0016220:469678-469697 | None:intergenic | 20.0% |
| !!! | GTTGATTCTATTTAAAACAA+TGG | + | tig0016220:470001-470020 | Msa1358270:intron | 20.0% |
| !!! | AATAAAAGATGCTTTTGAAA+AGG | + | tig0016220:470266-470285 | Msa1358270:intron | 20.0% |
| ! | AAGATTGGTACTCTTATATA+TGG | - | tig0016220:465583-465602 | None:intergenic | 25.0% |
| !!! | AAATTGTTGTTATTTGTAGG+AGG | + | tig0016220:466256-466275 | Msa1358270:intron | 25.0% |
| ! | CCTAATTCTAAATCACAATT+AGG | - | tig0016220:466357-466376 | None:intergenic | 25.0% |
| !! | CCTAATTGTGATTTAGAATT+AGG | + | tig0016220:466354-466373 | Msa1358270:intron | 25.0% |
| !! | TTTTGATCAGTTTTTGATGA+AGG | + | tig0016220:466393-466412 | Msa1358270:intron | 25.0% |
| ! | TTAGGATATTGAAGCTAATT+TGG | + | tig0016220:466643-466662 | Msa1358270:intron | 25.0% |
| !!! | AAGCTAATTTGGTTTTTAAG+TGG | + | tig0016220:466654-466673 | Msa1358270:intron | 25.0% |
| ! | AATATCTGTAACTCTGTTAT+AGG | + | tig0016220:466755-466774 | Msa1358270:intron | 25.0% |
| ! | TGTTACATTGATGTTGTAAA+GGG | + | tig0016220:466856-466875 | Msa1358270:intron | 25.0% |
| !!! | AAGAACATAAATGGACTAAA+TGG | - | tig0016220:466937-466956 | None:intergenic | 25.0% |
| ! | ATTTAGTCCATTTATGTTCT+TGG | + | tig0016220:466936-466955 | Msa1358270:intron | 25.0% |
| ! | TTTAGTCCATTTATGTTCTT+GGG | + | tig0016220:466937-466956 | Msa1358270:intron | 25.0% |
| !! | TTAAATTATTTCTTGCCACA+TGG | - | tig0016220:466969-466988 | None:intergenic | 25.0% |
| ! | ATGTGGCAAGAAATAATTTA+AGG | + | tig0016220:466968-466987 | Msa1358270:intron | 25.0% |
| ! | TGTGGCAAGAAATAATTTAA+GGG | + | tig0016220:466969-466988 | Msa1358270:intron | 25.0% |
| ! | TAATGATGATAGTACAGAAA+AGG | + | tig0016220:468394-468413 | Msa1358270:CDS | 25.0% |
| ! | TAGAATTCATATACTCCTTA+AGG | - | tig0016220:468635-468654 | None:intergenic | 25.0% |
| !!! | GCAATTAGATTTTAATCTCA+AGG | + | tig0016220:468787-468806 | Msa1358270:CDS | 25.0% |
| !! | CATATTGTTGCTACATTTTA+AGG | + | tig0016220:468889-468908 | Msa1358270:intron | 25.0% |
| ! | CTTAATGTCATTGAAAAGAA+AGG | + | tig0016220:469118-469137 | Msa1358270:intron | 25.0% |
| ! | TAAAGTTATAAATAAGAGGG+AGG | - | tig0016220:469174-469193 | None:intergenic | 25.0% |
| !!! | AAATATTAAGTTGGAGCATT+TGG | + | tig0016220:469740-469759 | Msa1358270:intron | 25.0% |
| !!! | GACATTTTTCAAGGATATAA+GGG | - | tig0016220:469805-469824 | None:intergenic | 25.0% |
| ! | TACAAAAATGCAACAAAAAG+GGG | - | tig0016220:469839-469858 | None:intergenic | 25.0% |
| ! | CTACAAAAATGCAACAAAAA+GGG | - | tig0016220:469840-469859 | None:intergenic | 25.0% |
| ! | TCTACAAAAATGCAACAAAA+AGG | - | tig0016220:469841-469860 | None:intergenic | 25.0% |
| ! | TATAGTCATTTAACCCAATA+GGG | - | tig0016220:469868-469887 | None:intergenic | 25.0% |
| ! | TTATAGTCATTTAACCCAAT+AGG | - | tig0016220:469869-469888 | None:intergenic | 25.0% |
| ! | ACATTGCATAGTATTATTGT+TGG | + | tig0016220:469888-469907 | Msa1358270:intron | 25.0% |
| !!! | TTACTTGCTGTTTAAATGAA+AGG | - | tig0016220:470109-470128 | None:intergenic | 25.0% |
| !!! | TTCAAAAGCATCTTTTATTG+AGG | - | tig0016220:470265-470284 | None:intergenic | 25.0% |
| !! | TAAACTGCATATTGATTGTT+TGG | + | tig0016220:470290-470309 | Msa1358270:intron | 25.0% |
| ! | ATCTACTAAATATGAACTTC+AGG | + | tig0016220:470325-470344 | Msa1358270:intron | 25.0% |
| ! | AACAGAGAAAAAATTGTAGT+GGG | - | tig0016220:470430-470449 | None:intergenic | 25.0% |
| ! | TGTTTATTAACGATTTCGAA+AGG | - | tig0016220:471159-471178 | None:intergenic | 25.0% |
| ACAGTTACTAATTTACCCTT+GGG | + | tig0016220:465753-465772 | Msa1358270:five_prime_UTR | 30.0% | |
| !! | CGCAAATTGTTGTTATTTGT+AGG | + | tig0016220:466253-466272 | Msa1358270:intron | 30.0% |
| ! | TGGTTTTTGTTCTTTATCCT+CGG | - | tig0016220:466300-466319 | None:intergenic | 30.0% |
| ACCATATGTTGCTATAATCA+AGG | + | tig0016220:466316-466335 | Msa1358270:CDS | 30.0% | |
| ACCTTGATTATAGCAACATA+TGG | - | tig0016220:466320-466339 | None:intergenic | 30.0% | |
| TAAACCCTAAAATGTTGTTG+AGG | + | tig0016220:466466-466485 | Msa1358270:intron | 30.0% | |
| AAACCCTAAAATGTTGTTGA+GGG | + | tig0016220:466467-466486 | Msa1358270:intron | 30.0% | |
| TGCAGAGAAAAATTATAGGA+AGG | + | tig0016220:466490-466509 | Msa1358270:intron | 30.0% | |
| ATATTGATATCTGATCCATC+AGG | + | tig0016220:466710-466729 | Msa1358270:intron | 30.0% | |
| GCTGTGATATAATTTAGGAA+AGG | + | tig0016220:466797-466816 | Msa1358270:intron | 30.0% | |
| GTGTTACATTGATGTTGTAA+AGG | + | tig0016220:466855-466874 | Msa1358270:intron | 30.0% | |
| ! | TAAATGGAGCGTTTGTTAAA+TGG | - | tig0016220:466921-466940 | None:intergenic | 30.0% |
| TTTGTATTATTGGGAATCTC+AGG | + | tig0016220:467295-467314 | Msa1358270:intron | 30.0% | |
| CAAATATTGATAAGGAGTTC+AGG | - | tig0016220:467648-467667 | None:intergenic | 30.0% | |
| GAAAATCAAGAAAAGCAGAA+AGG | - | tig0016220:467680-467699 | None:intergenic | 30.0% | |
| !! | TTCTGCTTTTCTTGATTTTC+TGG | + | tig0016220:467680-467699 | Msa1358270:intron | 30.0% |
| ATCAAAACACTCAGATTGAA+AGG | - | tig0016220:467716-467735 | None:intergenic | 30.0% | |
| !!! | TTGATATTGCTTTTTCTGTC+AGG | + | tig0016220:467731-467750 | Msa1358270:intron | 30.0% |
| GACATTATACAGTACTTTAG+TGG | + | tig0016220:467753-467772 | Msa1358270:CDS | 30.0% | |
| GTAAATTTCAATGCACTAAC+TGG | + | tig0016220:468311-468330 | Msa1358270:CDS | 30.0% | |
| GATAGTACAGAAAAGGAAAA+AGG | + | tig0016220:468401-468420 | Msa1358270:CDS | 30.0% | |
| !! | ATTTTTGATTGCATCAGACT+CGG | - | tig0016220:468438-468457 | None:intergenic | 30.0% |
| TCATATACTCCTTAAGGAAA+GGG | - | tig0016220:468579-468598 | None:intergenic | 30.0% | |
| TTCATATACTCCTTAAGGAA+AGG | - | tig0016220:468580-468599 | None:intergenic | 30.0% | |
| TCATATACTCCTTAAGGAAA+GGG | - | tig0016220:468579-468598 | None:intergenic | 30.0% | |
| TTCATATACTCCTTAAGGAA+AGG | - | tig0016220:468580-468599 | None:intergenic | 30.0% | |
| ! | AGAAGTATAACCAAAAGTTG+CGG | + | tig0016220:468765-468784 | Msa1358270:CDS | 30.0% |
| CATAATGAGAAACAATGAGT+TGG | + | tig0016220:469017-469036 | Msa1358270:intron | 30.0% | |
| TTCTGCAAAGAACACAAAAA+TGG | - | tig0016220:469358-469377 | None:intergenic | 30.0% | |
| TATGACACCCATTGAATTAA+AGG | + | tig0016220:469438-469457 | Msa1358270:CDS | 30.0% | |
| TCTCGTACCTTTAATTCAAT+GGG | - | tig0016220:469448-469467 | None:intergenic | 30.0% | |
| ATCTCGTACCTTTAATTCAA+TGG | - | tig0016220:469449-469468 | None:intergenic | 30.0% | |
| !! | ATTTTGGAGACTATTGTAGA+AGG | - | tig0016220:469628-469647 | None:intergenic | 30.0% |
| !! | ATCAAAGGAGCATAACATTT+TGG | - | tig0016220:469644-469663 | None:intergenic | 30.0% |
| !! | AGCATTTGGAACTTTTTCTA+GGG | + | tig0016220:469754-469773 | Msa1358270:intron | 30.0% |
| !! | TTTTCAAGGATATAAGGGAA+GGG | - | tig0016220:469800-469819 | None:intergenic | 30.0% |
| !!! | TTTTTCAAGGATATAAGGGA+AGG | - | tig0016220:469801-469820 | None:intergenic | 30.0% |
| !!! | CGACATTTTTCAAGGATATA+AGG | - | tig0016220:469806-469825 | None:intergenic | 30.0% |
| ACAAAAATGCAACAAAAAGG+GGG | - | tig0016220:469838-469857 | None:intergenic | 30.0% | |
| TGCATAGTATTATTGTTGGT+TGG | + | tig0016220:469892-469911 | Msa1358270:intron | 30.0% | |
| !! | ATACAAAACAAGCATTGAAG+AGG | - | tig0016220:469965-469984 | None:intergenic | 30.0% |
| !!! | TCTTCAATGCTTGTTTTGTA+TGG | + | tig0016220:469964-469983 | Msa1358270:intron | 30.0% |
| !! | TTGTATGGAATTGCTTTTGT+AGG | + | tig0016220:469979-469998 | Msa1358270:intron | 30.0% |
| TAGATAAACTCTCAGAATAC+TGG | + | tig0016220:470040-470059 | Msa1358270:intron | 30.0% | |
| ! | ATTGATTGTTTGGTTTCGTA+TGG | + | tig0016220:470300-470319 | Msa1358270:intron | 30.0% |
| TACTAAATATGAACTTCAGG+AGG | + | tig0016220:470328-470347 | Msa1358270:intron | 30.0% | |
| ACTAAATATGAACTTCAGGA+GGG | + | tig0016220:470329-470348 | Msa1358270:intron | 30.0% | |
| ! | AAAAAATTGTAGTGGGAGAA+AGG | - | tig0016220:470423-470442 | None:intergenic | 30.0% |
| CAACAGAGAAAAAATTGTAG+TGG | - | tig0016220:470431-470450 | None:intergenic | 30.0% | |
| AAAAAATGCAAACCTGGTAA+CGG | - | tig0016220:470574-470593 | None:intergenic | 30.0% | |
| TCAAGTAAAAAATGCAAACC+TGG | - | tig0016220:470580-470599 | None:intergenic | 30.0% | |
| CTTGAAGTCAAAATTCCAAA+CGG | + | tig0016220:470595-470614 | Msa1358270:intron | 30.0% | |
| ! | AACATCTTCAAATTTTGCAG+TGG | - | tig0016220:470792-470811 | None:intergenic | 30.0% |
| TCAACATTGTCATCTTTCTT+GGG | - | tig0016220:470926-470945 | None:intergenic | 30.0% | |
| ! | GTTGCAATTTGTTTACTTTG+AGG | + | tig0016220:470995-471014 | Msa1358270:three_prime_UTR | 30.0% |
| GACAGTTACTAATTTACCCT+TGG | + | tig0016220:465752-465771 | Msa1358270:five_prime_UTR | 35.0% | |
| ACAGTGAGAACAATTCAAAG+CGG | + | tig0016220:465858-465877 | Msa1358270:five_prime_UTR | 35.0% | |
| TTGTGTGAGAAATGGTGAAT+CGG | + | tig0016220:465881-465900 | Msa1358270:exon | 35.0% | |
| ! | ATCGTTATTGCTATTGTCGT+TGG | - | tig0016220:466028-466047 | None:intergenic | 35.0% |
| ! | TACGAATCGTTTGAGTTTGA+TGG | + | tig0016220:466159-466178 | Msa1358270:CDS | 35.0% |
| ! | GGTTTTTGTTCTTTATCCTC+GGG | - | tig0016220:466299-466318 | None:intergenic | 35.0% |
| ! | TAGGGTTTAGAATGCATGAA+AGG | - | tig0016220:466455-466474 | None:intergenic | 35.0% |
| AGGGTGCAGAGAAAAATTAT+AGG | + | tig0016220:466486-466505 | Msa1358270:intron | 35.0% | |
| CTAAATCCAAAGCATGACAA+TGG | - | tig0016220:466621-466640 | None:intergenic | 35.0% | |
| ! | CATGCTTTGGATTTAGCATT+AGG | + | tig0016220:466625-466644 | Msa1358270:intron | 35.0% |
| ATATTGTACTTGACTACTGG+TGG | - | tig0016220:466740-466759 | None:intergenic | 35.0% | |
| CAGATATTGTACTTGACTAC+TGG | - | tig0016220:466743-466762 | None:intergenic | 35.0% | |
| GCAGAGCTGTGATATAATTT+AGG | + | tig0016220:466792-466811 | Msa1358270:intron | 35.0% | |
| TTTGTTAAATGGAGCATACC+TGG | - | tig0016220:466910-466929 | None:intergenic | 35.0% | |
| CTTTCACCCAAGAACATAAA+TGG | - | tig0016220:466946-466965 | None:intergenic | 35.0% | |
| GATGGAAGAGGAAACATATT+TGG | - | tig0016220:467048-467067 | None:intergenic | 35.0% | |
| AGATCCCCGATAATTAAAGA+GGG | - | tig0016220:467181-467200 | None:intergenic | 35.0% | |
| ! | TCTGATTTGTATGGTCAAGT+TGG | + | tig0016220:467251-467270 | Msa1358270:intron | 35.0% |
| ATCAAAAAGATGTGCCACAT+TGG | + | tig0016220:467403-467422 | Msa1358270:CDS | 35.0% | |
| TCAAAAAGATGTGCCACATT+GGG | + | tig0016220:467404-467423 | Msa1358270:CDS | 35.0% | |
| !! | AAGACCCTAAATGGACTAAA+TGG | + | tig0016220:467600-467619 | Msa1358270:intron | 35.0% |
| TGCTCCATTTAGTCCATTTA+GGG | - | tig0016220:467607-467626 | None:intergenic | 35.0% | |
| ATGCTCCATTTAGTCCATTT+AGG | - | tig0016220:467608-467627 | None:intergenic | 35.0% | |
| !! | AAATGGACTAAATGGAGCAT+TGG | + | tig0016220:467608-467627 | Msa1358270:intron | 35.0% |
| !! | TAAATGGAGCATTGGCTAAA+TGG | + | tig0016220:467616-467635 | Msa1358270:intron | 35.0% |
| !!! | CCTTTTTTTTCAGCTTCTTC+AGG | - | tig0016220:467813-467832 | None:intergenic | 35.0% |
| CCTGAAGAAGCTGAAAAAAA+AGG | + | tig0016220:467810-467829 | Msa1358270:CDS | 35.0% | |
| GAAGAAGCTGAAAAAAAAGG+CGG | + | tig0016220:467813-467832 | Msa1358270:CDS | 35.0% | |
| ! | TTATAGTTTTCACCGTGATG+AGG | + | tig0016220:467872-467891 | Msa1358270:CDS | 35.0% |
| TTCGGAAACTGTTTGTTCAA+GGG | - | tig0016220:467942-467961 | None:intergenic | 35.0% | |
| TTTCGGAAACTGTTTGTTCA+AGG | - | tig0016220:467943-467962 | None:intergenic | 35.0% | |
| CAGAAAACTGTAAAACGCAT+CGG | + | tig0016220:468083-468102 | Msa1358270:CDS | 35.0% | |
| TTTCTCCCATTGATGTTTCA+AGG | + | tig0016220:468195-468214 | Msa1358270:CDS | 35.0% | |
| TTCTCCCATTGATGTTTCAA+GGG | + | tig0016220:468196-468215 | Msa1358270:CDS | 35.0% | |
| TCATTATTAACACAACTCCC+AGG | - | tig0016220:468269-468288 | None:intergenic | 35.0% | |
| GAAACATTCATCGTGACAAA+TGG | + | tig0016220:468333-468352 | Msa1358270:CDS | 35.0% | |
| ACAGAAAAGGAAAAAGGATC+AGG | + | tig0016220:468407-468426 | Msa1358270:CDS | 35.0% | |
| AGAAATAGCAAATGACTCTC+AGG | + | tig0016220:468478-468497 | Msa1358270:CDS | 35.0% | |
| TTCTTACTTCCCTTTCCTTA+AGG | + | tig0016220:468567-468586 | Msa1358270:intron | 35.0% | |
| TTCTTACTTCCCTTTCCTTA+AGG | + | tig0016220:468567-468586 | Msa1358270:intron | 35.0% | |
| !!! | AGTTTTTTCAAGAGCAGCTA+TGG | - | tig0016220:468717-468736 | None:intergenic | 35.0% |
| TCTTGAAAAAACTTCCCATG+AGG | + | tig0016220:468724-468743 | Msa1358270:CDS | 35.0% | |
| ATCTGTTGAAAAAGCCTCAT+GGG | - | tig0016220:468741-468760 | None:intergenic | 35.0% | |
| AATCTGTTGAAAAAGCCTCA+TGG | - | tig0016220:468742-468761 | None:intergenic | 35.0% | |
| ! | AATCTAATTGCCGCAACTTT+TGG | - | tig0016220:468778-468797 | None:intergenic | 35.0% |
| !!! | TGTTGCTACATTTTAAGGTG+TGG | + | tig0016220:468894-468913 | Msa1358270:intron | 35.0% |
| !!! | GTTGCTACATTTTAAGGTGT+GGG | + | tig0016220:468895-468914 | Msa1358270:intron | 35.0% |
| ! | GAAACAATGAGTTGGAATGT+TGG | + | tig0016220:469025-469044 | Msa1358270:intron | 35.0% |
| AAACATCGTCGTTATAACCA+TGG | - | tig0016220:469256-469275 | None:intergenic | 35.0% | |
| ! | GGTTATAACGACGATGTTTT+TGG | + | tig0016220:469257-469276 | Msa1358270:intron | 35.0% |
| TCAACTCTCCATTTAACAGA+CGG | - | tig0016220:469399-469418 | None:intergenic | 35.0% | |
| ! | TGAATGCTGCTAGCTTAAAT+TGG | - | tig0016220:469568-469587 | None:intergenic | 35.0% |
| !! | GAGCATTTGGAACTTTTTCT+AGG | + | tig0016220:469753-469772 | Msa1358270:intron | 35.0% |
| !! | GCATTTGGAACTTTTTCTAG+GGG | + | tig0016220:469755-469774 | Msa1358270:intron | 35.0% |
| !! | CATTTGGAACTTTTTCTAGG+GGG | + | tig0016220:469756-469775 | Msa1358270:intron | 35.0% |
| TTTCAAGGATATAAGGGAAG+GGG | - | tig0016220:469799-469818 | None:intergenic | 35.0% | |
| CAAAAATGCAACAAAAAGGG+GGG | - | tig0016220:469837-469856 | None:intergenic | 35.0% | |
| ! | TTTTTGTAGACTGTCCCTAT+TGG | + | tig0016220:469851-469870 | Msa1358270:intron | 35.0% |
| ! | TTTTGTAGACTGTCCCTATT+GGG | + | tig0016220:469852-469871 | Msa1358270:intron | 35.0% |
| AACTCTCAGAATACTGGAAA+TGG | + | tig0016220:470046-470065 | Msa1358270:intron | 35.0% | |
| AAATGGCTCATGCTTTCAAA+CGG | + | tig0016220:470063-470082 | Msa1358270:intron | 35.0% | |
| ! | AAGCATCTTTTATTGAGGAC+AGG | - | tig0016220:470260-470279 | None:intergenic | 35.0% |
| TGTCATCTATTTGAGGGAAA+GGG | - | tig0016220:470480-470499 | None:intergenic | 35.0% | |
| TTCAAGATGCACAGATTCTA+AGG | + | tig0016220:470511-470530 | Msa1358270:CDS | 35.0% | |
| ! | TCTAAAGCTATAGGACACAT+TGG | - | tig0016220:470622-470641 | None:intergenic | 35.0% |
| !! | AAACCAAGCTCTAAAGCTAT+AGG | - | tig0016220:470631-470650 | None:intergenic | 35.0% |
| ! | TCAAATTTTGCAGTGGAAGA+TGG | - | tig0016220:470785-470804 | None:intergenic | 35.0% |
| TGAACCATCTATTCCTGATT+TGG | + | tig0016220:470877-470896 | Msa1358270:CDS | 35.0% | |
| CTCAACATTGTCATCTTTCT+TGG | - | tig0016220:470927-470946 | None:intergenic | 35.0% | |
| CAAGAAAGATGACAATGTTG+AGG | + | tig0016220:470925-470944 | Msa1358270:CDS | 35.0% | |
| ! | TCTACATACACAACTTTTGC+TGG | - | tig0016220:471027-471046 | None:intergenic | 35.0% |
| ! | AGTGATCTTTTGGTCCTAAA+GGG | + | tig0016220:471073-471092 | Msa1358270:three_prime_UTR | 35.0% |
| TGCAATTAACACTACCCTTT+AGG | - | tig0016220:471090-471109 | None:intergenic | 35.0% | |
| !! | TCGGGTTGATCAATCAAGAT+TGG | - | tig0016220:465598-465617 | None:intergenic | 40.0% |
| TCTTCCTAGTGTCAATTTCG+AGG | + | tig0016220:465668-465687 | Msa1358270:five_prime_UTR | 40.0% | |
| CTTCCTAGTGTCAATTTCGA+GGG | + | tig0016220:465669-465688 | Msa1358270:five_prime_UTR | 40.0% | |
| AATCCCTCGAAATTGACACT+AGG | - | tig0016220:465675-465694 | None:intergenic | 40.0% | |
| TACTAATTTACCCTTGGGTC+AGG | + | tig0016220:465758-465777 | Msa1358270:five_prime_UTR | 40.0% | |
| ACTAATTTACCCTTGGGTCA+GGG | + | tig0016220:465759-465778 | Msa1358270:five_prime_UTR | 40.0% | |
| CAAACAATTTGACTCACGAC+AGG | - | tig0016220:465829-465848 | None:intergenic | 40.0% | |
| TGCGAAGGAAGAAGAGAAAA+AGG | + | tig0016220:466053-466072 | Msa1358270:CDS | 40.0% | |
| ! | GGTTTAGAATGCATGAAAGG+AGG | - | tig0016220:466452-466471 | None:intergenic | 40.0% |
| ! | GCACCCTCAACAACATTTTA+GGG | - | tig0016220:466473-466492 | None:intergenic | 40.0% |
| ! | TGCACCCTCAACAACATTTT+AGG | - | tig0016220:466474-466493 | None:intergenic | 40.0% |
| CCAAAGCATGACAATGGAAA+CGG | - | tig0016220:466615-466634 | None:intergenic | 40.0% | |
| ! | TGGACTCGTTGATAAGAGTT+GGG | - | tig0016220:466890-466909 | None:intergenic | 40.0% |
| AGCTATGGATTCGTTTGTGA+CGG | - | tig0016220:467144-467163 | None:intergenic | 40.0% | |
| GATAATTAAAGAGGGGAGAG+CGG | - | tig0016220:467173-467192 | None:intergenic | 40.0% | |
| GCTCTCCCCTCTTTAATTAT+CGG | + | tig0016220:467172-467191 | Msa1358270:CDS | 40.0% | |
| CTCTCCCCTCTTTAATTATC+GGG | + | tig0016220:467173-467192 | Msa1358270:CDS | 40.0% | |
| TCTCCCCTCTTTAATTATCG+GGG | + | tig0016220:467174-467193 | Msa1358270:CDS | 40.0% | |
| GATCCCCGATAATTAAAGAG+GGG | - | tig0016220:467180-467199 | None:intergenic | 40.0% | |
| GAGATCCCCGATAATTAAAG+AGG | - | tig0016220:467182-467201 | None:intergenic | 40.0% | |
| TTTAATTATCGGGGATCTCC+TGG | + | tig0016220:467183-467202 | Msa1358270:CDS | 40.0% | |
| CTTTCATCGGAGAAAAATCC+AGG | - | tig0016220:467204-467223 | None:intergenic | 40.0% | |
| TCCGATGAAAGTAACGATGT+TGG | + | tig0016220:467213-467232 | Msa1358270:CDS | 40.0% | |
| ! | CCCAACATCGTTACTTTCAT+CGG | - | tig0016220:467217-467236 | None:intergenic | 40.0% |
| CCGATGAAAGTAACGATGTT+GGG | + | tig0016220:467214-467233 | Msa1358270:CDS | 40.0% | |
| CGAATTCGATATCGAATCTC+AGG | + | tig0016220:467328-467347 | Msa1358270:CDS | 40.0% | |
| GAGTGATCATAAGAGAGAAG+AGG | + | tig0016220:467481-467500 | Msa1358270:intron | 40.0% | |
| TCTTCCATCAAGACCCTAAA+TGG | + | tig0016220:467591-467610 | Msa1358270:intron | 40.0% | |
| ! | TAGTCCATTTAGGGTCTTGA+TGG | - | tig0016220:467598-467617 | None:intergenic | 40.0% |
| GTACTTTAGTGGCAGCATAA+TGG | + | tig0016220:467764-467783 | Msa1358270:CDS | 40.0% | |
| CTGGAAATCGTGTGATACAA+GGG | + | tig0016220:467842-467861 | Msa1358270:CDS | 40.0% | |
| TTATGCATAACAGACTCTGC+AGG | - | tig0016220:467900-467919 | None:intergenic | 40.0% | |
| GTCTGTTATGCATAAGTGTG+TGG | + | tig0016220:467905-467924 | Msa1358270:CDS | 40.0% | |
| ! | ACAAAGGGTGTATGACACTT+TGG | + | tig0016220:467989-468008 | Msa1358270:CDS | 40.0% |
| ! | ACACTTTGGAAAGGAAACTC+TGG | + | tig0016220:468003-468022 | Msa1358270:CDS | 40.0% |
| TCCTCCCTTGAAACATCAAT+GGG | - | tig0016220:468203-468222 | None:intergenic | 40.0% | |
| CATTCATCGTGACAAATGGT+TGG | + | tig0016220:468337-468356 | Msa1358270:CDS | 40.0% | |
| AAGGAAAGGGAAGTAAGAAC+AGG | - | tig0016220:468566-468585 | None:intergenic | 40.0% | |
| AAGGAAAGGGAAGTAAGAAC+AGG | - | tig0016220:468566-468585 | None:intergenic | 40.0% | |
| TTAATCTCAAGGTCAGAAGC+TGG | + | tig0016220:468798-468817 | Msa1358270:intron | 40.0% | |
| AAGAGGATTGGATGTGACAA+TGG | - | tig0016220:469197-469216 | None:intergenic | 40.0% | |
| !!! | ATGTCATTTTTTCTCCGCAG+TGG | + | tig0016220:469308-469327 | Msa1358270:intron | 40.0% |
| TCAGTTCATCATTACCACTG+CGG | - | tig0016220:469325-469344 | None:intergenic | 40.0% | |
| CTTCATTTCATTCAGCAGAC+AGG | - | tig0016220:469516-469535 | None:intergenic | 40.0% | |
| ! | CTACGTGAATGTTTTCTGCA+AGG | - | tig0016220:469932-469951 | None:intergenic | 40.0% |
| TGCTGAGGAAAAAACCAAGA+AGG | + | tig0016220:470358-470377 | Msa1358270:CDS | 40.0% | |
| !! | TGCATGTGTTGTTTCTCATC+AGG | - | tig0016220:470386-470405 | None:intergenic | 40.0% |
| ! | AATTGTAGTGGGAGAAAGGA+AGG | - | tig0016220:470419-470438 | None:intergenic | 40.0% |
| CTGTCATCTATTTGAGGGAA+AGG | - | tig0016220:470481-470500 | None:intergenic | 40.0% | |
| GGCATCTGTCATCTATTTGA+GGG | - | tig0016220:470486-470505 | None:intergenic | 40.0% | |
| AATCTGTGCATCTTGAACAG+CGG | - | tig0016220:470508-470527 | None:intergenic | 40.0% | |
| ! | AAGATGCACAGATTCTAAGG+TGG | + | tig0016220:470514-470533 | Msa1358270:CDS | 40.0% |
| !! | AGATGCACAGATTCTAAGGT+GGG | + | tig0016220:470515-470534 | Msa1358270:CDS | 40.0% |
| !! | TGTCCTATAGCTTTAGAGCT+TGG | + | tig0016220:470625-470644 | Msa1358270:intron | 40.0% |
| ACACATTCCAGCTGAAGAAA+AGG | - | tig0016220:470671-470690 | None:intergenic | 40.0% | |
| !! | TGCACTGACTATAGATGCAT+TGG | + | tig0016220:470733-470752 | Msa1358270:CDS | 40.0% |
| TGAAGATGTTCAGAAGAAGC+TGG | + | tig0016220:470802-470821 | Msa1358270:CDS | 40.0% | |
| ! | GATGACCTCTCTAAGAAAAC+AGG | + | tig0016220:470854-470873 | Msa1358270:CDS | 40.0% |
| ! | GTTCACCTGTTTTCTTAGAG+AGG | - | tig0016220:470862-470881 | None:intergenic | 40.0% |
| ! | TTCCTTATCAGCCTGTCTTT+TGG | - | tig0016220:470951-470970 | None:intergenic | 40.0% |
| ! | ACTTGCAGACAGTGATCTTT+TGG | + | tig0016220:471063-471082 | Msa1358270:three_prime_UTR | 40.0% |
| ! | CAGTGATCTTTTGGTCCTAA+AGG | + | tig0016220:471072-471091 | Msa1358270:three_prime_UTR | 40.0% |
| CAAAGCGGTTGTGTGAGAAA+TGG | + | tig0016220:465873-465892 | Msa1358270:exon | 45.0% | |
| GTCTTCTTCGTCATCACTTG+TGG | - | tig0016220:465923-465942 | None:intergenic | 45.0% | |
| !! | TTGCGAAGCTTTGAATGCTG+AGG | - | tig0016220:465961-465980 | None:intergenic | 45.0% |
| CAATAACGATAGCGATGCGA+AGG | + | tig0016220:466038-466057 | Msa1358270:CDS | 45.0% | |
| !! | TTTGCATCCTCTGGAGTTTG+AGG | - | tig0016220:466084-466103 | None:intergenic | 45.0% |
| ACCCTAAGTGGTTCACCAAT+CGG | - | tig0016220:466108-466127 | None:intergenic | 45.0% | |
| TGGTGAACCACTTAGGGTTT+CGG | + | tig0016220:466110-466129 | Msa1358270:CDS | 45.0% | |
| CCGTTTCCATTGTCATGCTT+TGG | + | tig0016220:466612-466631 | Msa1358270:intron | 45.0% | |
| TTGTACTTGACTACTGGTGG+TGG | - | tig0016220:466737-466756 | None:intergenic | 45.0% | |
| ! | TCGTTGATAAGAGTTGGGGA+GGG | - | tig0016220:466885-466904 | None:intergenic | 45.0% |
| ! | GGACTCGTTGATAAGAGTTG+GGG | - | tig0016220:466889-466908 | None:intergenic | 45.0% |
| ! | CTGGACTCGTTGATAAGAGT+TGG | - | tig0016220:466891-466910 | None:intergenic | 45.0% |
| CAACTCTTATCAACGAGTCC+AGG | + | tig0016220:466889-466908 | Msa1358270:intron | 45.0% | |
| ! | TATCTGTTTCCAAGCGTTGC+TGG | + | tig0016220:467352-467371 | Msa1358270:CDS | 45.0% |
| ATTATCAGTCCAGCAACGCT+TGG | - | tig0016220:467364-467383 | None:intergenic | 45.0% | |
| AAAAGATGTGCCACATTGGG+AGG | + | tig0016220:467407-467426 | Msa1358270:CDS | 45.0% | |
| CTTTAGTGGCAGCATAATGG+TGG | + | tig0016220:467767-467786 | Msa1358270:CDS | 45.0% | |
| GAAGCTGAAAAAAAAGGCGG+TGG | + | tig0016220:467816-467835 | Msa1358270:CDS | 45.0% | |
| AAAAAAAAGGCGGTGGAAGC+TGG | + | tig0016220:467823-467842 | Msa1358270:CDS | 45.0% | |
| GCTGGAAATCGTGTGATACA+AGG | + | tig0016220:467841-467860 | Msa1358270:CDS | 45.0% | |
| ! | CCAGGATGTTGCTTACGTTT+CGG | - | tig0016220:467960-467979 | None:intergenic | 45.0% |
| ATCCTGGCTTCATCGTACAA+AGG | + | tig0016220:467973-467992 | Msa1358270:CDS | 45.0% | |
| TCCTGGCTTCATCGTACAAA+GGG | + | tig0016220:467974-467993 | Msa1358270:CDS | 45.0% | |
| ! | GGGTGTATGACACTTTGGAA+AGG | + | tig0016220:467994-468013 | Msa1358270:CDS | 45.0% |
| ! | ACTCTGGAAGCTGACTGATA+AGG | + | tig0016220:468019-468038 | Msa1358270:CDS | 45.0% |
| GCTGACTGATAAGGACTATG+AGG | + | tig0016220:468028-468047 | Msa1358270:CDS | 45.0% | |
| CAAGCTCGTCAATTTCTTGC+TGG | - | tig0016220:468061-468080 | None:intergenic | 45.0% | |
| TCCCATTGATGTTTCAAGGG+AGG | + | tig0016220:468199-468218 | Msa1358270:CDS | 45.0% | |
| CTCCTCCCTTGAAACATCAA+TGG | - | tig0016220:468204-468223 | None:intergenic | 45.0% | |
| CATTGATGTTTCAAGGGAGG+AGG | + | tig0016220:468202-468221 | Msa1358270:CDS | 45.0% | |
| GTGTTTCAGGCTTGGAATGT+TGG | - | tig0016220:468247-468266 | None:intergenic | 45.0% | |
| ATTCCAAGCCTGAAACACCT+GGG | + | tig0016220:468249-468268 | Msa1358270:CDS | 45.0% | |
| ATCGTGACAAATGGTTGGAG+AGG | + | tig0016220:468342-468361 | Msa1358270:CDS | 45.0% | |
| AGCAAATGACTCTCAGGACA+AGG | + | tig0016220:468484-468503 | Msa1358270:CDS | 45.0% | |
| GCAAATGACTCTCAGGACAA+GGG | + | tig0016220:468485-468504 | Msa1358270:CDS | 45.0% | |
| ! | AGAGTTCCGAGTCTTTTGTG+TGG | + | tig0016220:468672-468691 | Msa1358270:intron | 45.0% |
| ATCTGGCCACACAAAAGACT+CGG | - | tig0016220:468681-468700 | None:intergenic | 45.0% | |
| TGTCACATCCAATCCTCTTG+CGG | + | tig0016220:469198-469217 | Msa1358270:intron | 45.0% | |
| CAAAAACACCGCAAGAGGAT+TGG | - | tig0016220:469209-469228 | None:intergenic | 45.0% | |
| ! | CAATCCTCTTGCGGTGTTTT+TGG | + | tig0016220:469207-469226 | Msa1358270:intron | 45.0% |
| TTTGGCCTGCGAAATCAATG+TGG | + | tig0016220:469225-469244 | Msa1358270:intron | 45.0% | |
| AAATCAATGTGGCAGCACCA+TGG | + | tig0016220:469236-469255 | Msa1358270:intron | 45.0% | |
| GGTACGAGATTGTCTAGATG+TGG | + | tig0016220:469459-469478 | Msa1358270:intron | 45.0% | |
| !! | GAACTTTTTCTAGGGGGAAG+TGG | + | tig0016220:469762-469781 | Msa1358270:intron | 45.0% |
| ! | AGGGTGGTCGACATTTTTCA+AGG | - | tig0016220:469814-469833 | None:intergenic | 45.0% |
| AATGCAACAAAAAGGGGGGA+GGG | - | tig0016220:469833-469852 | None:intergenic | 45.0% | |
| AAATGCAACAAAAAGGGGGG+AGG | - | tig0016220:469834-469853 | None:intergenic | 45.0% | |
| TTTCTCATCAGGCTCCTTCT+TGG | - | tig0016220:470375-470394 | None:intergenic | 45.0% | |
| GGGCATCTGTCATCTATTTG+AGG | - | tig0016220:470487-470506 | None:intergenic | 45.0% | |
| ATCTGTGCATCTTGAACAGC+GGG | - | tig0016220:470507-470526 | None:intergenic | 45.0% | |
| !! | AGATTCTAAGGTGGGCTTGA+GGG | + | tig0016220:470523-470542 | Msa1358270:CDS | 45.0% |
| ATAGGACACATTGGTCCGTT+TGG | - | tig0016220:470613-470632 | None:intergenic | 45.0% | |
| ! | TGTTCTGCCTTTTCTTCAGC+TGG | + | tig0016220:470661-470680 | Msa1358270:intron | 45.0% |
| CAATGTTGAGGCCAAAAGAC+AGG | + | tig0016220:470937-470956 | Msa1358270:CDS | 45.0% | |
| !!! | TATAAAATTTATGTTTTATT+TGG | + | tig0016220:468516-468535 | Msa1358270:intron | 5.0% |
| !!! | ATAAAATTTATGTTTTATTT+GGG | + | tig0016220:468517-468536 | Msa1358270:intron | 5.0% |
| AGATTGAGACCCTGACCCAA+GGG | - | tig0016220:465771-465790 | None:intergenic | 50.0% | |
| TAGATTGAGACCCTGACCCA+AGG | - | tig0016220:465772-465791 | None:intergenic | 50.0% | |
| !! | AGCTTTGAATGCTGAGGTGG+CGG | - | tig0016220:465955-465974 | None:intergenic | 50.0% |
| !! | CGAAGCTTTGAATGCTGAGG+TGG | - | tig0016220:465958-465977 | None:intergenic | 50.0% |
| AGCCGATTGGTGAACCACTT+AGG | + | tig0016220:466103-466122 | Msa1358270:CDS | 50.0% | |
| GCCGATTGGTGAACCACTTA+GGG | + | tig0016220:466104-466123 | Msa1358270:CDS | 50.0% | |
| GGTGAACCACTTAGGGTTTC+GGG | + | tig0016220:466111-466130 | Msa1358270:CDS | 50.0% | |
| ! | CCTTTTCCCGAAACCCTAAG+TGG | - | tig0016220:466120-466139 | None:intergenic | 50.0% |
| CCACTTAGGGTTTCGGGAAA+AGG | + | tig0016220:466117-466136 | Msa1358270:CDS | 50.0% | |
| AGGGTTTCGGGAAAAGGAAG+AGG | + | tig0016220:466123-466142 | Msa1358270:CDS | 50.0% | |
| GGGTTTCGGGAAAAGGAAGA+GGG | + | tig0016220:466124-466143 | Msa1358270:CDS | 50.0% | |
| TTTCGGGAAAAGGAAGAGGG+AGG | + | tig0016220:466127-466146 | Msa1358270:CDS | 50.0% | |
| ! | CTCGTTGATAAGAGTTGGGG+AGG | - | tig0016220:466886-466905 | None:intergenic | 50.0% |
| GTTCTTGGGTGAAAGCCATG+TGG | + | tig0016220:466951-466970 | Msa1358270:intron | 50.0% | |
| ! | AGAAAGCGCAACACAGTGAG+AGG | - | tig0016220:467092-467111 | None:intergenic | 50.0% |
| GGCGAGACAAAGATGAGAAG+AGG | - | tig0016220:467117-467136 | None:intergenic | 50.0% | |
| GGGTCTTGATGGAAGACATG+TGG | - | tig0016220:467587-467606 | None:intergenic | 50.0% | |
| ACTCTGCAGGAACCTCATCA+CGG | - | tig0016220:467887-467906 | None:intergenic | 50.0% | |
| CCGAAACGTAAGCAACATCC+TGG | + | tig0016220:467957-467976 | Msa1358270:CDS | 50.0% | |
| ACCCTTTGTACGATGAAGCC+AGG | - | tig0016220:467978-467997 | None:intergenic | 50.0% | |
| GATGTTTCAAGGGAGGAGGA+AGG | + | tig0016220:468206-468225 | Msa1358270:CDS | 50.0% | |
| CATTCCAAGCCTGAAACACC+TGG | + | tig0016220:468248-468267 | Msa1358270:CDS | 50.0% | |
| ACACAACTCCCAGGTGTTTC+AGG | - | tig0016220:468260-468279 | None:intergenic | 50.0% | |
| ATGGCTGAAACAGCAGCATC+TGG | - | tig0016220:468698-468717 | None:intergenic | 50.0% | |
| !! | TGCTGCCACATTGATTTCGC+AGG | - | tig0016220:469233-469252 | None:intergenic | 50.0% |
| CTAGCACGCCGTCTGTTAAA+TGG | + | tig0016220:469388-469407 | Msa1358270:CDS | 50.0% | |
| !! | CAGATTCTAAGGTGGGCTTG+AGG | + | tig0016220:470522-470541 | Msa1358270:CDS | 50.0% |
| AACGGTCATCATGTCCAGCA+TGG | - | tig0016220:470556-470575 | None:intergenic | 50.0% | |
| TGGACATGATGACCGTTACC+AGG | + | tig0016220:470559-470578 | Msa1358270:CDS | 50.0% | |
| GTGTTGCCTGTGGTAATTCC+TGG | + | tig0016220:470687-470706 | Msa1358270:CDS | 50.0% | |
| GGCATACCAGGAATTACCAC+AGG | - | tig0016220:470696-470715 | None:intergenic | 50.0% | |
| TCAGTGCAGACACCTCATCA+CGG | - | tig0016220:470721-470740 | None:intergenic | 50.0% | |
| ! | AGCTGAGTTTTCAGAGCCAC+GGG | - | tig0016220:470834-470853 | None:intergenic | 50.0% |
| ! | CAGCTGAGTTTTCAGAGCCA+CGG | - | tig0016220:470835-470854 | None:intergenic | 50.0% |
| GCGGCCAAATCAGGAATAGA+TGG | - | tig0016220:470884-470903 | None:intergenic | 50.0% | |
| CTTGCCAAATGACTTCTGGG+CGG | - | tig0016220:470903-470922 | None:intergenic | 50.0% | |
| GGGCTTGCCAAATGACTTCT+GGG | - | tig0016220:470906-470925 | None:intergenic | 50.0% | |
| TGGGCTTGCCAAATGACTTC+TGG | - | tig0016220:470907-470926 | None:intergenic | 50.0% | |
| GGCCAAAAGACAGGCTGATA+AGG | + | tig0016220:470946-470965 | Msa1358270:CDS | 50.0% | |
| ! | TTTGAATGCTGAGGTGGCGG+TGG | - | tig0016220:465952-465971 | None:intergenic | 55.0% |
| GGATTCGCCTCAAACTCCAG+AGG | + | tig0016220:466074-466093 | Msa1358270:CDS | 55.0% | |
| ! | CCAATCGGCTTTGCATCCTC+TGG | - | tig0016220:466093-466112 | None:intergenic | 55.0% |
| CCAGAGGATGCAAAGCCGAT+TGG | + | tig0016220:466090-466109 | Msa1358270:CDS | 55.0% | |
| TCCTGTAATGCTTGTGCCCG+AGG | + | tig0016220:466280-466299 | Msa1358270:CDS | 55.0% | |
| TCCTCGGGCACAAGCATTAC+AGG | - | tig0016220:466284-466303 | None:intergenic | 55.0% | |
| !! | ACTACTGGTGGTGGTCCTGA+TGG | - | tig0016220:466728-466747 | None:intergenic | 55.0% |
| ACACAGTGAGAGGAGGTTGG+CGG | - | tig0016220:467082-467101 | None:intergenic | 55.0% | |
| GCAACACAGTGAGAGGAGGT+TGG | - | tig0016220:467085-467104 | None:intergenic | 55.0% | |
| AAGCGCAACACAGTGAGAGG+AGG | - | tig0016220:467089-467108 | None:intergenic | 55.0% | |
| GGATTCGTTTGTGACGGCAG+CGG | - | tig0016220:467138-467157 | None:intergenic | 55.0% | |
| GTGCCACATTGGGAGGTTCA+AGG | + | tig0016220:467414-467433 | Msa1358270:CDS | 55.0% | |
| CCACATTGGGAGGTTCAAGG+CGG | + | tig0016220:467417-467436 | Msa1358270:CDS | 55.0% | |
| AGTGGCAGCATAATGGTGGC+TGG | + | tig0016220:467771-467790 | Msa1358270:CDS | 55.0% | |
| GCATAATGGTGGCTGGACAG+TGG | + | tig0016220:467778-467797 | Msa1358270:CDS | 55.0% | |
| TGTCCTCCTGAACAGCAGGA+GGG | - | tig0016220:468139-468158 | None:intergenic | 55.0% | |
| ATGTCCTCCTGAACAGCAGG+AGG | - | tig0016220:468140-468159 | None:intergenic | 55.0% | |
| GTCATGTCCTCCTGAACAGC+AGG | - | tig0016220:468143-468162 | None:intergenic | 55.0% | |
| ACTCCCAGGTGTTTCAGGCT+TGG | - | tig0016220:468255-468274 | None:intergenic | 55.0% | |
| CTCTCAGGACAAGGGTCAGA+AGG | + | tig0016220:468493-468512 | Msa1358270:CDS | 55.0% | |
| CAGGCCAAAAACACCGCAAG+AGG | - | tig0016220:469214-469233 | None:intergenic | 55.0% | |
| TCAGGAGGGTTTGACTGCTG+AGG | + | tig0016220:470343-470362 | Msa1358270:intron | 55.0% | |
| CAGCTGGAATGTGTTGCCTG+TGG | + | tig0016220:470677-470696 | Msa1358270:intron | 55.0% | |
| CAGTGCAGACACCTCATCAC+GGG | - | tig0016220:470720-470739 | None:intergenic | 55.0% | |
| ! | CTGAGTTTTCAGAGCCACGG+GGG | - | tig0016220:470832-470851 | None:intergenic | 55.0% |
| ! | GCTGAGTTTTCAGAGCCACG+GGG | - | tig0016220:470833-470852 | None:intergenic | 55.0% |
| TTGGCCGCCCAGAAGTCATT+TGG | + | tig0016220:470896-470915 | Msa1358270:CDS | 55.0% | |
| GGTGAATCGGCGCTTCACTC+AGG | + | tig0016220:465894-465913 | Msa1358270:CDS | 60.0% | |
| GAATCGGCGCTTCACTCAGG+TGG | + | tig0016220:465897-465916 | Msa1358270:CDS | 60.0% | |
| CCGCCTTGAACCTCCCAATG+TGG | - | tig0016220:467420-467439 | None:intergenic | 60.0% | |
| CATTGGGAGGTTCAAGGCGG+CGG | + | tig0016220:467420-467439 | Msa1358270:CDS | 60.0% | |
| ATTGGGAGGTTCAAGGCGGC+GGG | + | tig0016220:467421-467440 | Msa1358270:CDS | 60.0% | |
| !! | AGGTTCAAGGCGGTGGGCTA+CGG | + | tig0016220:467447-467466 | Msa1358270:CDS | 60.0% |
| ACAGCAGGAGGGGCTTCTTC+AGG | - | tig0016220:468128-468147 | None:intergenic | 60.0% | |
| AGAAGCCCCTCCTGCTGTTC+AGG | + | tig0016220:468130-468149 | Msa1358270:CDS | 60.0% | |
| GTCCTCCTGAACAGCAGGAG+GGG | - | tig0016220:468138-468157 | None:intergenic | 60.0% | |
| GCAACAAAAAGGGGGGAGGG+TGG | - | tig0016220:469830-469849 | None:intergenic | 60.0% | |
| ! | CTCATCACGGGAGGCATACC+AGG | - | tig0016220:470708-470727 | None:intergenic | 60.0% |
| CTGGTATGCCTCCCGTGATG+AGG | + | tig0016220:470706-470725 | Msa1358270:CDS | 60.0% | |
| TGCAGACACCTCATCACGGG+AGG | - | tig0016220:470717-470736 | None:intergenic | 60.0% | |
| GACTTCTGGGCGGCCAAATC+AGG | - | tig0016220:470893-470912 | None:intergenic | 60.0% | |
| GCGATGGGCAGCGATGGAAG+AGG | - | tig0016220:467060-467079 | None:intergenic | 65.0% | |
| GAGAGGAGGTTGGCGGCGAT+GGG | - | tig0016220:467075-467094 | None:intergenic | 65.0% | |
| TGAGAGGAGGTTGGCGGCGA+TGG | - | tig0016220:467076-467095 | None:intergenic | 65.0% | |
| GGAGAGCGGCGACAGAGCTA+TGG | - | tig0016220:467159-467178 | None:intergenic | 65.0% | |
| GGGAGGAGGTTCAAGGCGGT+GGG | + | tig0016220:467441-467460 | Msa1358270:CDS | 65.0% | |
| !! | TTCAAGGCGGTGGGCTACGG+TGG | + | tig0016220:467450-467469 | Msa1358270:CDS | 65.0% |
| AGCCCCTCCTGCTGTTCAGG+AGG | + | tig0016220:468133-468152 | Msa1358270:CDS | 65.0% | |
| AAGAAGCTGGTGAGCCCCCG+TGG | + | tig0016220:470815-470834 | Msa1358270:CDS | 65.0% | |
| TTGGCGGCGATGGGCAGCGA+TGG | - | tig0016220:467066-467085 | None:intergenic | 70.0% | |
| AGGTTCAAGGCGGCGGGAGG+AGG | + | tig0016220:467427-467446 | Msa1358270:CDS | 70.0% | |
| AGGCGGCGGGAGGAGGTTCA+AGG | + | tig0016220:467434-467453 | Msa1358270:CDS | 70.0% | |
| CGGCGGGAGGAGGTTCAAGG+CGG | + | tig0016220:467437-467456 | Msa1358270:CDS | 70.0% | |
| CGGGAGGAGGTTCAAGGCGG+TGG | + | tig0016220:467440-467459 | Msa1358270:CDS | 70.0% | |
| GGGAGGTTCAAGGCGGCGGG+AGG | + | tig0016220:467424-467443 | Msa1358270:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016220 | gene | 465549 | 471204 | 465549 | ID=Msa1358270;Name=Msa1358270 |
| tig0016220 | mRNA | 465549 | 471204 | 465549 | ID=Msa1358270-mRNA-1;Parent=Msa1358270;Name=Msa1358270-mRNA-1;_AED=0.32;_eAED=0.32;_QI=322|0.7|0.81|0.81|0.9|0.81|11|231|677 |
| tig0016220 | exon | 465549 | 465644 | 465549 | ID=Msa1358270-mRNA-1:exon:10736;Parent=Msa1358270-mRNA-1 |
| tig0016220 | exon | 465666 | 466197 | 465666 | ID=Msa1358270-mRNA-1:exon:10737;Parent=Msa1358270-mRNA-1 |
| tig0016220 | exon | 466275 | 466337 | 466275 | ID=Msa1358270-mRNA-1:exon:10738;Parent=Msa1358270-mRNA-1 |
| tig0016220 | exon | 467162 | 467238 | 467162 | ID=Msa1358270-mRNA-1:exon:10739;Parent=Msa1358270-mRNA-1 |
| tig0016220 | exon | 467317 | 467482 | 467317 | ID=Msa1358270-mRNA-1:exon:10740;Parent=Msa1358270-mRNA-1 |
| tig0016220 | exon | 467753 | 468514 | 467753 | ID=Msa1358270-mRNA-1:exon:10741;Parent=Msa1358270-mRNA-1 |
| tig0016220 | exon | 468674 | 468808 | 468674 | ID=Msa1358270-mRNA-1:exon:10742;Parent=Msa1358270-mRNA-1 |
| tig0016220 | exon | 469376 | 469459 | 469376 | ID=Msa1358270-mRNA-1:exon:10743;Parent=Msa1358270-mRNA-1 |
| tig0016220 | exon | 470347 | 470406 | 470347 | ID=Msa1358270-mRNA-1:exon:10744;Parent=Msa1358270-mRNA-1 |
| tig0016220 | exon | 470494 | 470580 | 470494 | ID=Msa1358270-mRNA-1:exon:10745;Parent=Msa1358270-mRNA-1 |
| tig0016220 | exon | 470680 | 471204 | 470680 | ID=Msa1358270-mRNA-1:exon:10746;Parent=Msa1358270-mRNA-1 |
| tig0016220 | five_prime_UTR | 465549 | 465644 | 465549 | ID=Msa1358270-mRNA-1:five_prime_utr;Parent=Msa1358270-mRNA-1 |
| tig0016220 | five_prime_UTR | 465666 | 465891 | 465666 | ID=Msa1358270-mRNA-1:five_prime_utr;Parent=Msa1358270-mRNA-1 |
| tig0016220 | CDS | 465892 | 466197 | 465892 | ID=Msa1358270-mRNA-1:cds;Parent=Msa1358270-mRNA-1 |
| tig0016220 | CDS | 466275 | 466337 | 466275 | ID=Msa1358270-mRNA-1:cds;Parent=Msa1358270-mRNA-1 |
| tig0016220 | CDS | 467162 | 467238 | 467162 | ID=Msa1358270-mRNA-1:cds;Parent=Msa1358270-mRNA-1 |
| tig0016220 | CDS | 467317 | 467482 | 467317 | ID=Msa1358270-mRNA-1:cds;Parent=Msa1358270-mRNA-1 |
| tig0016220 | CDS | 467753 | 468514 | 467753 | ID=Msa1358270-mRNA-1:cds;Parent=Msa1358270-mRNA-1 |
| tig0016220 | CDS | 468674 | 468808 | 468674 | ID=Msa1358270-mRNA-1:cds;Parent=Msa1358270-mRNA-1 |
| tig0016220 | CDS | 469376 | 469459 | 469376 | ID=Msa1358270-mRNA-1:cds;Parent=Msa1358270-mRNA-1 |
| tig0016220 | CDS | 470347 | 470406 | 470347 | ID=Msa1358270-mRNA-1:cds;Parent=Msa1358270-mRNA-1 |
| tig0016220 | CDS | 470494 | 470580 | 470494 | ID=Msa1358270-mRNA-1:cds;Parent=Msa1358270-mRNA-1 |
| tig0016220 | CDS | 470680 | 470973 | 470680 | ID=Msa1358270-mRNA-1:cds;Parent=Msa1358270-mRNA-1 |
| tig0016220 | three_prime_UTR | 470974 | 471204 | 470974 | ID=Msa1358270-mRNA-1:three_prime_utr;Parent=Msa1358270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
