AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0828680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0828680 MtrunA17_Chr5g0397411 92.953 596 13 1 1 567 1 596 0.0 1133
Msa0828680 MtrunA17_Chr8g0386831 59.000 600 190 10 1 565 1 579 0.0 647
Msa0828680 MtrunA17_Chr8g0386841 57.692 520 179 6 29 517 16 525 0.0 548
Msa0828680 MtrunA17_Chr6g0474401 44.062 320 106 4 103 422 11 257 2.59e-81 255
Msa0828680 MtrunA17_Chr6g0451341 33.333 141 90 3 96 236 39 175 2.18e-16 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0828680 AT4G11560.1 47.993 598 217 10 1 533 2 570 0.0 523
Msa0828680 AT4G11560.2 50.891 505 195 8 1 471 2 487 4.43e-168 486
Msa0828680 AT4G23120.1 40.390 359 151 8 67 422 25 323 3.74e-71 233
Msa0828680 AT2G25120.1 38.386 409 181 8 11 417 9 348 8.72e-71 232
Msa0828680 AT3G43990.1 53.514 185 84 2 65 247 48 232 1.86e-58 200
Msa0828680 AT3G48050.1 38.298 141 83 3 96 236 47 183 1.50e-23 106
Msa0828680 AT3G48050.2 38.298 141 83 3 96 236 47 183 1.50e-23 106
Msa0828680 AT3G48060.1 38.298 141 83 3 96 236 47 183 1.58e-23 106
Msa0828680 AT3G48060.3 38.298 141 83 3 96 236 47 183 1.58e-23 106
Msa0828680 AT3G48060.2 38.298 141 83 3 96 236 48 184 1.63e-23 106

Find 139 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAACATTGTCATCTTTCT+TGG 0.116362 5_4:+1522448 None:intergenic
TGGGCTTGCCAAATGACTTC+TGG 0.171692 5_4:+1522468 None:intergenic
GGTGAACCGCTTAGGGTTTC+GGG 0.196881 5_4:-1526789 Msa0828680:CDS
TATGACACCCATTGAATTAA+AGG 0.227423 5_4:-1523935 Msa0828680:intron
TGGTGAACCGCTTAGGGTTT+CGG 0.228943 5_4:-1526790 Msa0828680:CDS
ACACAACTCCCAGGTGTTTC+AGG 0.232493 5_4:+1525067 None:intergenic
TTTCTCATCAGGCTCCTTCT+TGG 0.255962 5_4:+1523001 None:intergenic
GTAAATTTCAATGCACTAAC+TGG 0.263561 5_4:-1525013 Msa0828680:CDS
TACGAATCGTTTGAGTTTGA+TGG 0.267511 5_4:-1526741 Msa0828680:CDS
TCCTCAGGCACAAGCATTAC+AGG 0.270223 5_4:+1526617 None:intergenic
AATCTAATTGCCGCAACTTT+TGG 0.277842 5_4:+1524599 None:intergenic
TTCCTTATCAGCCTGTCTTT+TGG 0.290673 5_4:+1522424 None:intergenic
AAGATTGGTACTCTTATATA+TGG 0.298881 5_4:+1527328 None:intergenic
CTAGCACGCCGTCTGTTAAA+TGG 0.309640 5_4:-1523985 Msa0828680:CDS
ACTTGCAGACAGTGATCTTT+TGG 0.309695 5_4:-1522309 Msa0828680:three_prime_UTR
AGAAGCCCCTCCTGCTGTTC+AGG 0.311627 5_4:-1525194 Msa0828680:CDS
CTTTGAATCCAATGTATCTA+TGG 0.321392 5_4:+1522631 None:intergenic
TGAACCATCTATTCCTGATT+TGG 0.330530 5_4:-1522495 Msa0828680:CDS
ATCTCGTACCTTTAATTCAA+TGG 0.344360 5_4:+1523927 None:intergenic
TGCAATTAACACTACCCTTT+AGG 0.347302 5_4:+1522285 None:intergenic
TCAACATTGTCATCTTTCTT+GGG 0.347350 5_4:+1522449 None:intergenic
GATAGTACAGAAAAGGAAAA+AGG 0.351330 5_4:-1524923 Msa0828680:CDS
TACTAATTTACCCTTGGGTC+AGG 0.351758 5_4:-1527153 Msa0828680:five_prime_UTR
TGCGAAGGAAGAAGAGAAAA+AGG 0.356657 5_4:-1526847 Msa0828680:CDS
TGCATGTGTTGTTTCTCATC+AGG 0.363326 5_4:+1522990 None:intergenic
GACTTCTGGGCGGCCAAATC+AGG 0.367390 5_4:+1522482 None:intergenic
CAAGCTCGTCAATTTCTTGC+TGG 0.369834 5_4:+1525266 None:intergenic
GGGCTTGCCAAATGACTTCT+GGG 0.374683 5_4:+1522469 None:intergenic
CCAGGATGTTGCTTACGTTT+CGG 0.380998 5_4:+1525367 None:intergenic
ACAGCAGGAGGGGCTTCTTC+AGG 0.386675 5_4:+1525199 None:intergenic
TTGGCCGCCCAGAAGTCATT+TGG 0.395640 5_4:-1522476 Msa0828680:CDS
ACCTTGATTATAGCAACATA+TGG 0.401609 5_4:+1526581 None:intergenic
GTGTTGCCTGTGGTAATTCC+TGG 0.411316 5_4:-1522685 Msa0828680:CDS
AGCCGATTGGTGAACCGCTT+AGG 0.413719 5_4:-1526797 Msa0828680:CDS
CCGCTTAGGGTTTCGGGAAA+AGG 0.414955 5_4:-1526783 Msa0828680:CDS
ATCGTTATTGCTATTGTCGT+TGG 0.415419 5_4:+1526875 None:intergenic
GCCGATTGGTGAACCGCTTA+GGG 0.419110 5_4:-1526796 Msa0828680:CDS
CCAATCGGCTTTGCATCCTC+TGG 0.421294 5_4:+1526810 None:intergenic
GACATTATACAGTACTTTAG+TGG 0.426230 5_4:-1525571 Msa0828680:CDS
CTCCTCCCTTGAAACATCAA+TGG 0.427461 5_4:+1525123 None:intergenic
ATGGCTGAAACAGCAGCATC+TGG 0.436363 5_4:+1524679 None:intergenic
GACAGTTACTAATTTACCCT+TGG 0.440433 5_4:-1527159 Msa0828680:five_prime_UTR
TTTGCATCCTCTGGAGTTTG+AGG 0.446276 5_4:+1526819 None:intergenic
TTTCTCCCATTGATGTTTCA+AGG 0.450822 5_4:-1525129 Msa0828680:CDS
CTCATCACGGGAGGCATACC+AGG 0.460341 5_4:+1522667 None:intergenic
ACAGTTACTAATTTACCCTT+GGG 0.462300 5_4:-1527158 Msa0828680:five_prime_UTR
GAAACATTCACCGTGACAAA+TGG 0.465385 5_4:-1524991 Msa0828680:CDS
GTTGCAATTTGTTTACTTTG+AGG 0.467805 5_4:-1522377 Msa0828680:three_prime_UTR
TCTCGTACCTTTAATTCAAT+GGG 0.468552 5_4:+1523928 None:intergenic
AGAAATAGCAAATGACTCTC+AGG 0.469188 5_4:-1524846 Msa0828680:CDS
ACTCCCAGGTGTTTCAGGCT+TGG 0.469894 5_4:+1525072 None:intergenic
TTTCGGAAACTGTTTGTTCA+AGG 0.470021 5_4:+1525384 None:intergenic
CATTCCAAGCCTGAAACACC+TGG 0.472142 5_4:-1525076 Msa0828680:CDS
GATGACCTCTCTAAGAAAAC+AGG 0.475849 5_4:-1522518 Msa0828680:CDS
GTGTTTCAGGCTTGGAATGT+TGG 0.476316 5_4:+1525080 None:intergenic
GGGTTTCGGGAAAAGGAAGA+TGG 0.478440 5_4:-1526776 Msa0828680:CDS
GGCCAAAAGACAGGCTGATA+AGG 0.483360 5_4:-1522426 Msa0828680:CDS
GTCATGTCCTCCTGAACAGC+AGG 0.484994 5_4:+1525184 None:intergenic
TCCTCCCTTGAAACATCAAT+GGG 0.486319 5_4:+1525124 None:intergenic
ACCCTAAGCGGTTCACCAAT+CGG 0.486441 5_4:+1526795 None:intergenic
TGTTTATTAACGATTTCAAA+AGG 0.490386 5_4:+1522216 None:intergenic
TAATGATGATAGTACAGAAA+AGG 0.495563 5_4:-1524930 Msa0828680:CDS
ACCATATGTTGCTATAATCA+AGG 0.496977 5_4:-1526582 Msa0828680:intron
GTCTTCTTCGTCATCACTTG+TGG 0.500496 5_4:+1526980 None:intergenic
GTACTTTAGTGGCAGCATAA+TGG 0.504494 5_4:-1525560 Msa0828680:CDS
TCTTCCTAGTGTCAATTTCG+AGG 0.507867 5_4:-1527240 Msa0828680:five_prime_UTR
GCGGCCAAATCAGGAATAGA+TGG 0.511799 5_4:+1522491 None:intergenic
GCTGGAAATCGTGTGATACA+AGG 0.519406 5_4:-1525483 Msa0828680:CDS
GTCCTCCTGAACAGCAGGAG+GGG 0.521044 5_4:+1525189 None:intergenic
CTTCCTAGTGTCAATTTCGA+GGG 0.523365 5_4:-1527239 Msa0828680:five_prime_UTR
CATTGATGTTTCAAGGGAGG+AGG 0.524697 5_4:-1525122 Msa0828680:CDS
CAATGTTGAGGCCAAAAGAC+AGG 0.525748 5_4:-1522435 Msa0828680:CDS
ACAAAGGGTGTATGACACTT+TGG 0.526883 5_4:-1525335 Msa0828680:CDS
TTCTCCCATTGATGTTTCAA+GGG 0.527106 5_4:-1525128 Msa0828680:CDS
TCGGGTTGATCAATCAAGAT+TGG 0.527965 5_4:+1527313 None:intergenic
AGCTTTGAATGCTGAGGTGG+CGG 0.528450 5_4:+1526948 None:intergenic
GCTGACTGATAAGGACTATG+AGG 0.528522 5_4:-1525296 Msa0828680:CDS
CCGAAACGTAAGCAACATCC+TGG 0.530479 5_4:-1525367 Msa0828680:CDS
TCCTGGCTTCATCGTACAAA+GGG 0.531256 5_4:-1525350 Msa0828680:CDS
TTGTGTGAGAAATGGTGAAT+CGG 0.535101 5_4:-1527019 Msa0828680:exon
CTCTCAGGACAAGGGTCAGA+AGG 0.536064 5_4:-1524831 Msa0828680:intron
ACACTTTGGAAAGGAAACTC+TGG 0.538265 5_4:-1525321 Msa0828680:CDS
CGAAGCTTTGAATGCTGAGG+TGG 0.540004 5_4:+1526945 None:intergenic
TTCGGAAACTGTTTGTTCAA+GGG 0.542344 5_4:+1525385 None:intergenic
TGCACTGACCATAGATACAT+TGG 0.543081 5_4:-1522639 Msa0828680:CDS
CAAAGCGGTTGTGTGAGAAA+TGG 0.546915 5_4:-1527027 Msa0828680:exon
TGAAGATGTTCAGAAGAAGC+TGG 0.546919 5_4:-1522570 Msa0828680:CDS
GGTGAATCGGCGCTTCACTC+AGG 0.550988 5_4:-1527006 Msa0828680:CDS
AGTGGCAGCATAATGGTGGC+TGG 0.555599 5_4:-1525553 Msa0828680:CDS
CACGGAATTTGACTCACGAC+AGG 0.556320 5_4:+1527085 None:intergenic
ACCCTTTGTACGATGAAGCC+AGG 0.557212 5_4:+1525349 None:intergenic
CCAGAGGATGCAAAGCCGAT+TGG 0.557621 5_4:-1526810 Msa0828680:CDS
AGCCCCTCCTGCTGTTCAGG+AGG 0.557713 5_4:-1525191 Msa0828680:CDS
ACTAATTTACCCTTGGGTCA+GGG 0.559698 5_4:-1527152 Msa0828680:five_prime_UTR
TCCTGTAATGCTTGTGCCTG+AGG 0.559738 5_4:-1526618 Msa0828680:CDS
ACTCTGGAAGCTGACTGATA+AGG 0.564232 5_4:-1525305 Msa0828680:CDS
TCCCATTGATGTTTCAAGGG+AGG 0.569045 5_4:-1525125 Msa0828680:CDS
CAGTGCAGACACCTCATCAC+GGG 0.572290 5_4:+1522655 None:intergenic
TCAACTCTCCATTTAACAGA+CGG 0.574437 5_4:+1523977 None:intergenic
TTTGAATGCTGAGGTGGCGG+TGG 0.576736 5_4:+1526951 None:intergenic
AGCAAATGACTCTCAGGACA+AGG 0.577134 5_4:-1524840 Msa0828680:CDS
CATTCACCGTGACAAATGGT+TGG 0.589269 5_4:-1524987 Msa0828680:CDS
TCAGGAGGGTTTGACTGCTG+AGG 0.593688 5_4:-1523030 Msa0828680:intron
CAATAACGATAGCGATGCGA+AGG 0.594367 5_4:-1526862 Msa0828680:CDS
TTATGCATAACAGACTCTGC+AGG 0.595127 5_4:+1525427 None:intergenic
GAATCGGCGCTTCACTCAGG+TGG 0.600311 5_4:-1527003 Msa0828680:CDS
CAGAAAACTGTAAAACGCAT+CGG 0.600560 5_4:-1525241 Msa0828680:CDS
ATCTGGCCACACAAAAGACT+CGG 0.601764 5_4:+1524696 None:intergenic
ATGTCCTCCTGAACAGCAGG+AGG 0.605044 5_4:+1525187 None:intergenic
TAGATTGAGACCCTGACCCA+AGG 0.605310 5_4:+1527142 None:intergenic
GATGTTTCAAGGGAGGAGGA+AGG 0.612495 5_4:-1525118 Msa0828680:CDS
ACCTCTCCAACCATTTGTCA+CGG 0.613441 5_4:+1524981 None:intergenic
ACCGTGACAAATGGTTGGAG+AGG 0.614489 5_4:-1524982 Msa0828680:CDS
CAATTCACAAACAATGAACA+CGG 0.615315 5_4:+1527067 None:intergenic
ATCCTGGCTTCATCGTACAA+AGG 0.616688 5_4:-1525351 Msa0828680:CDS
TTTCGGGAAAAGGAAGATGG+AGG 0.618020 5_4:-1526773 Msa0828680:CDS
CTGGTATGCCTCCCGTGATG+AGG 0.618696 5_4:-1522666 Msa0828680:CDS
GGCATACCAGGAATTACCAC+AGG 0.621637 5_4:+1522679 None:intergenic
TTGCGAAGCTTTGAATGCTG+AGG 0.622899 5_4:+1526942 None:intergenic
CAGCTGGAATGTGTTGCCTG+TGG 0.628082 5_4:-1522695 Msa0828680:CDS
CTTTAGTGGCAGCATAATGG+TGG 0.630836 5_4:-1525557 Msa0828680:CDS
AGATTGAGACCCTGACCCAA+GGG 0.630992 5_4:+1527143 None:intergenic
TGTCCTCCTGAACAGCAGGA+GGG 0.631508 5_4:+1525188 None:intergenic
GGGTGTATGACACTTTGGAA+AGG 0.632035 5_4:-1525330 Msa0828680:CDS
CTGGAAATCGTGTGATACAA+GGG 0.632399 5_4:-1525482 Msa0828680:CDS
GCATAATGGTGGCTGGACAG+TGG 0.638281 5_4:-1525546 Msa0828680:CDS
CAAGAAAGATGACAATGTTG+AGG 0.639737 5_4:-1522447 Msa0828680:CDS
AATCCCTCGAAATTGACACT+AGG 0.646260 5_4:+1527236 None:intergenic
AGAAGTATAACCAAAAGTTG+CGG 0.649597 5_4:-1524609 Msa0828680:CDS
TCAGTGCAGACACCTCATCA+CGG 0.652365 5_4:+1522654 None:intergenic
ACTCTGCAGGAACCTCATCA+CGG 0.657979 5_4:+1525440 None:intergenic
GTCTGTTATGCATAAGTGTG+TGG 0.658812 5_4:-1525419 Msa0828680:CDS
TCATTATTAACACAACTCCC+AGG 0.665992 5_4:+1525058 None:intergenic
TGCAGACACCTCATCACGGG+AGG 0.667878 5_4:+1522658 None:intergenic
GCAAATGACTCTCAGGACAA+GGG 0.672703 5_4:-1524839 Msa0828680:CDS
ATTCCAAGCCTGAAACACCT+GGG 0.701124 5_4:-1525075 Msa0828680:CDS
GGATTCGCCTCAAACTCCAG+AGG 0.710400 5_4:-1526826 Msa0828680:CDS
CTTGCCAAATGACTTCTGGG+CGG 0.738628 5_4:+1522472 None:intergenic
ACAGTGAGAACAATTCAAAG+CGG 0.739093 5_4:-1527042 Msa0828680:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATTTATATTTATGTCT+AGG - chr5_4:1525126-1525145 Msa0828680:CDS 10.0%
!!! TATTTTAGAAAATATTAAGT+TGG - chr5_4:1525907-1525926 Msa0828680:intron 10.0%
!!! ATCAAGGTATTTAATTAATA+TGG - chr5_4:1522983-1523002 Msa0828680:intron 15.0%
!! GTAAAAAACAAATATTGATA+AGG + chr5_4:1523882-1523901 None:intergenic 15.0%
!!! TCATTTTATATTGATAAGTC+GGG + chr5_4:1522257-1522276 None:intergenic 20.0%
!!! GTCATTTTATATTGATAAGT+CGG + chr5_4:1522258-1522277 None:intergenic 20.0%
!!! TTTATTTTGAGCTAAGTAAA+TGG - chr5_4:1522340-1522359 Msa0828680:three_prime_UTR 20.0%
!!! TTATTTTGAGCTAAGTAAAT+GGG - chr5_4:1522341-1522360 Msa0828680:three_prime_UTR 20.0%
!!! CTAATTGTGATTTAGAATTA+GGG - chr5_4:1523006-1523025 Msa0828680:CDS 20.0%
!! TTATAGAATGATTGAACATT+TGG - chr5_4:1523075-1523094 Msa0828680:intron 20.0%
!!! TAGCAAACAAATTTTTGATA+GGG + chr5_4:1523171-1523190 None:intergenic 20.0%
!!! TTAGCAAACAAATTTTTGAT+AGG + chr5_4:1523172-1523191 None:intergenic 20.0%
!!! AAAAATAGATCTGATTTGTA+TGG - chr5_4:1523486-1523505 Msa0828680:intron 20.0%
!!! TGATTTTCGATTTGTATTAT+TGG - chr5_4:1523529-1523548 Msa0828680:intron 20.0%
!!! GATTTTCGATTTGTATTATT+GGG - chr5_4:1523530-1523549 Msa0828680:intron 20.0%
!! CAAAAAATAAAAGAAGCTTA+AGG - chr5_4:1524387-1524406 Msa0828680:intron 20.0%
!! AATTTATATTTATGTCTAGG+AGG - chr5_4:1525129-1525148 Msa0828680:CDS 20.0%
!! TTAATGTCATTGAAAAGAAA+GGG - chr5_4:1525294-1525313 Msa0828680:CDS 20.0%
!! TGGTAAAGTTATAAATAAGA+GGG + chr5_4:1525353-1525372 None:intergenic 20.0%
!! ATGGTAAAGTTATAAATAAG+AGG + chr5_4:1525354-1525373 None:intergenic 20.0%
!!! GTCATATTCAAAATTTTAGA+AGG + chr5_4:1525600-1525619 None:intergenic 20.0%
!!! GTATTTTCTAAAATGTTCAA+TGG - chr5_4:1525657-1525676 Msa0828680:intron 20.0%
!! TAGGATAAAGAAATAATCAA+AGG + chr5_4:1525835-1525854 None:intergenic 20.0%
!!! GTATATTCATTTCTTTTAGT+AGG + chr5_4:1525854-1525873 None:intergenic 20.0%
!!! GTTGATTCTATTTAAAACAA+TGG - chr5_4:1526177-1526196 Msa0828680:intron 20.0%
!!! AATAAAAGATGCTTTTGAAA+AGG - chr5_4:1526442-1526461 Msa0828680:intron 20.0%
!! TGTTTATTAACGATTTCAAA+AGG + chr5_4:1527336-1527355 None:intergenic 20.0%
! AAGATTGGTACTCTTATATA+TGG + chr5_4:1522224-1522243 None:intergenic 25.0%
!!! AAATTGTTGTTTTTTGTAGG+AGG - chr5_4:1522907-1522926 Msa0828680:intron 25.0%
!! GCTAATTGTGATTTAGAATT+AGG - chr5_4:1523005-1523024 Msa0828680:CDS 25.0%
!!! GAAAGATTGAACATTTTGAT+CGG - chr5_4:1523031-1523050 Msa0828680:intron 25.0%
! TGTAGAGAAAAATTATAGGA+AGG - chr5_4:1523138-1523157 Msa0828680:intron 25.0%
!! CAAATGTTAAATTTTACCGA+TGG + chr5_4:1523252-1523271 None:intergenic 25.0%
!! GTGGCAAAAAAAATTTTTGA+GGG + chr5_4:1523810-1523829 None:intergenic 25.0%
!! TGTGGCAAAAAAAATTTTTG+AGG + chr5_4:1523811-1523830 None:intergenic 25.0%
! TAATGATGATAGTACAGAAA+AGG - chr5_4:1524619-1524638 Msa0828680:CDS 25.0%
!!! ATTTTTTATTGCATCAGACT+CGG + chr5_4:1524663-1524682 None:intergenic 25.0%
!!! GCAATTAGATTTTAATCTCA+AGG - chr5_4:1524962-1524981 Msa0828680:CDS 25.0%
!! CATATTGTTGCTACATTTTA+AGG - chr5_4:1525064-1525083 Msa0828680:CDS 25.0%
! CTTAATGTCATTGAAAAGAA+AGG - chr5_4:1525293-1525312 Msa0828680:CDS 25.0%
! TAAAGTTATAAATAAGAGGG+AGG + chr5_4:1525350-1525369 None:intergenic 25.0%
!!! AAATATTAAGTTGGAGCATT+TGG - chr5_4:1525916-1525935 Msa0828680:intron 25.0%
!!! GACATTTTTCAAGGATATAA+GGG + chr5_4:1525981-1526000 None:intergenic 25.0%
! TACAAAAATGCAACAAAAAG+GGG + chr5_4:1526015-1526034 None:intergenic 25.0%
! CTACAAAAATGCAACAAAAA+GGG + chr5_4:1526016-1526035 None:intergenic 25.0%
! TCTACAAAAATGCAACAAAA+AGG + chr5_4:1526017-1526036 None:intergenic 25.0%
! ACATTGCATAGTATTATTGT+TGG - chr5_4:1526064-1526083 Msa0828680:intron 25.0%
!!! TTACTTGCTGTTTAAATGAA+AGG + chr5_4:1526285-1526304 None:intergenic 25.0%
!!! TTCAAAAGCATCTTTTATTG+AGG + chr5_4:1526441-1526460 None:intergenic 25.0%
!! TAAACTGCATATTGATTGTT+TGG - chr5_4:1526466-1526485 Msa0828680:intron 25.0%
! ATCTACTAAATATGAACTTC+AGG - chr5_4:1526501-1526520 Msa0828680:intron 25.0%
! AACAGAGAAAAAATTGTAGT+GGG + chr5_4:1526606-1526625 None:intergenic 25.0%
ACAGTTACTAATTTACCCTT+GGG - chr5_4:1522391-1522410 Msa0828680:three_prime_UTR 30.0%
CAATTCACAAACAATGAACA+CGG + chr5_4:1522485-1522504 None:intergenic 30.0%
GGAAATCAATATTCTCTTGT+AGG - chr5_4:1522829-1522848 Msa0828680:intron 30.0%
!!! CGCAAATTGTTGTTTTTTGT+AGG - chr5_4:1522904-1522923 Msa0828680:intron 30.0%
ACCATATGTTGCTATAATCA+AGG - chr5_4:1522967-1522986 Msa0828680:intron 30.0%
ACCTTGATTATAGCAACATA+TGG + chr5_4:1522971-1522990 None:intergenic 30.0%
TAAACCCTAAAATGTTGTTG+AGG - chr5_4:1523114-1523133 Msa0828680:intron 30.0%
AAACCCTAAAATGTTGTTGA+GGG - chr5_4:1523115-1523134 Msa0828680:intron 30.0%
AGGGTGTAGAGAAAAATTAT+AGG - chr5_4:1523134-1523153 Msa0828680:intron 30.0%
TTTGTATTATTGGGAATCTC+AGG - chr5_4:1523539-1523558 Msa0828680:intron 30.0%
CAAATATTGATAAGGAGTTC+AGG + chr5_4:1523874-1523893 None:intergenic 30.0%
GAAAATCAAGAAAAGCAGAA+AGG + chr5_4:1523906-1523925 None:intergenic 30.0%
!! TTCTGCTTTTCTTGATTTTC+TGG - chr5_4:1523906-1523925 Msa0828680:intron 30.0%
ATCAAAACACTCAGATTGAA+AGG + chr5_4:1523942-1523961 None:intergenic 30.0%
!! TTTGATATTGCTTTTCTGTC+AGG - chr5_4:1523956-1523975 Msa0828680:CDS 30.0%
GACATTATACAGTACTTTAG+TGG - chr5_4:1523978-1523997 Msa0828680:CDS 30.0%
GTAAATTTCAATGCACTAAC+TGG - chr5_4:1524536-1524555 Msa0828680:intron 30.0%
GATAGTACAGAAAAGGAAAA+AGG - chr5_4:1524626-1524645 Msa0828680:CDS 30.0%
TCATATACTCCTTAAGGAAA+GGG + chr5_4:1524804-1524823 None:intergenic 30.0%
TTCATATACTCCTTAAGGAA+AGG + chr5_4:1524805-1524824 None:intergenic 30.0%
CAGAATTCATATACTCCTTA+AGG + chr5_4:1524810-1524829 None:intergenic 30.0%
! AGAAGTATAACCAAAAGTTG+CGG - chr5_4:1524940-1524959 Msa0828680:CDS 30.0%
CATAATGAGAAACAATGAGT+TGG - chr5_4:1525192-1525211 Msa0828680:CDS 30.0%
TTCTGCAAAGAACACAAAAA+TGG + chr5_4:1525534-1525553 None:intergenic 30.0%
TATGACACCCATTGAATTAA+AGG - chr5_4:1525614-1525633 Msa0828680:intron 30.0%
TCTCGTACCTTTAATTCAAT+GGG + chr5_4:1525624-1525643 None:intergenic 30.0%
ATCTCGTACCTTTAATTCAA+TGG + chr5_4:1525625-1525644 None:intergenic 30.0%
!! ATTTTGGAGACTATTGTAGA+AGG + chr5_4:1525804-1525823 None:intergenic 30.0%
!! ATCAAAGGAGCATAACATTT+TGG + chr5_4:1525820-1525839 None:intergenic 30.0%
!! AGCATTTGGAACTTTTTCTA+GGG - chr5_4:1525930-1525949 Msa0828680:intron 30.0%
!!! CGACATTTTTCAAGGATATA+AGG + chr5_4:1525982-1526001 None:intergenic 30.0%
ACAAAAATGCAACAAAAAGG+GGG + chr5_4:1526014-1526033 None:intergenic 30.0%
TGCATAGTATTATTGTTGGT+TGG - chr5_4:1526068-1526087 Msa0828680:intron 30.0%
!! ATACAAAACAAGCATTGAAG+AGG + chr5_4:1526141-1526160 None:intergenic 30.0%
!!! TCTTCAATGCTTGTTTTGTA+TGG - chr5_4:1526140-1526159 Msa0828680:intron 30.0%
!! TTGTATGGAATTGCTTTTGT+AGG - chr5_4:1526155-1526174 Msa0828680:intron 30.0%
TAGATAAACTCTCAGAATAC+TGG - chr5_4:1526216-1526235 Msa0828680:intron 30.0%
! ATTGATTGTTTGGTTTCGTA+TGG - chr5_4:1526476-1526495 Msa0828680:intron 30.0%
TACTAAATATGAACTTCAGG+AGG - chr5_4:1526504-1526523 Msa0828680:intron 30.0%
ACTAAATATGAACTTCAGGA+GGG - chr5_4:1526505-1526524 Msa0828680:intron 30.0%
! AAAAAATTGTAGTGGGAGAA+AGG + chr5_4:1526599-1526618 None:intergenic 30.0%
CAACAGAGAAAAAATTGTAG+TGG + chr5_4:1526607-1526626 None:intergenic 30.0%
AAAAAATGCAAACCTGGTAA+CGG + chr5_4:1526750-1526769 None:intergenic 30.0%
TTGGAAGTCAAAATTCCAAA+CGG - chr5_4:1526772-1526791 Msa0828680:CDS 30.0%
CTTTGAATCCAATGTATCTA+TGG + chr5_4:1526921-1526940 None:intergenic 30.0%
! AACATCTTCAAATTTTGCAG+TGG + chr5_4:1526969-1526988 None:intergenic 30.0%
TCAACATTGTCATCTTTCTT+GGG + chr5_4:1527103-1527122 None:intergenic 30.0%
! GTTGCAATTTGTTTACTTTG+AGG - chr5_4:1527172-1527191 Msa0828680:five_prime_UTR 30.0%
GACAGTTACTAATTTACCCT+TGG - chr5_4:1522390-1522409 Msa0828680:three_prime_UTR 35.0%
ACAGTGAGAACAATTCAAAG+CGG - chr5_4:1522507-1522526 Msa0828680:CDS 35.0%
TTGTGTGAGAAATGGTGAAT+CGG - chr5_4:1522530-1522549 Msa0828680:CDS 35.0%
! ATCGTTATTGCTATTGTCGT+TGG + chr5_4:1522677-1522696 None:intergenic 35.0%
! TACGAATCGTTTGAGTTTGA+TGG - chr5_4:1522808-1522827 Msa0828680:intron 35.0%
! GGTTTTTGTTCTTTATCCTC+AGG + chr5_4:1522950-1522969 None:intergenic 35.0%
!! ACATTTTGATCGGTTTTTGC+TGG - chr5_4:1523041-1523060 Msa0828680:intron 35.0%
! ACACCCTCAACAACATTTTA+GGG + chr5_4:1523121-1523140 None:intergenic 35.0%
! TACACCCTCAACAACATTTT+AGG + chr5_4:1523122-1523141 None:intergenic 35.0%
CGACATTGTTAAGTTTCCAT+CGG - chr5_4:1523233-1523252 Msa0828680:intron 35.0%
AGATCCCCGATAATTAAAGA+GGG + chr5_4:1523425-1523444 None:intergenic 35.0%
! TCTGATTTGTATGGTCAAGT+TGG - chr5_4:1523495-1523514 Msa0828680:intron 35.0%
ATCAAAAAGATGTGCCACAT+TGG - chr5_4:1523647-1523666 Msa0828680:intron 35.0%
TCAAAAAGATGTGCCACATT+GGG - chr5_4:1523648-1523667 Msa0828680:intron 35.0%
!! AAGACCCTAAATGGACTAAA+TGG - chr5_4:1523842-1523861 Msa0828680:intron 35.0%
TGCTCCATTTAGTCCATTTA+GGG + chr5_4:1523849-1523868 None:intergenic 35.0%
ATGCTCCATTTAGTCCATTT+AGG + chr5_4:1523850-1523869 None:intergenic 35.0%
!!! CCTTTTTTTTCAGCTTCTTC+AGG + chr5_4:1524038-1524057 None:intergenic 35.0%
CCTGAAGAAGCTGAAAAAAA+AGG - chr5_4:1524035-1524054 Msa0828680:intron 35.0%
GAAGAAGCTGAAAAAAAAGG+CGG - chr5_4:1524038-1524057 Msa0828680:intron 35.0%
! TTATAGTTTTCACCGTGATG+AGG - chr5_4:1524097-1524116 Msa0828680:intron 35.0%
TTCGGAAACTGTTTGTTCAA+GGG + chr5_4:1524167-1524186 None:intergenic 35.0%
TTTCGGAAACTGTTTGTTCA+AGG + chr5_4:1524168-1524187 None:intergenic 35.0%
CAGAAAACTGTAAAACGCAT+CGG - chr5_4:1524308-1524327 Msa0828680:intron 35.0%
TTTCTCCCATTGATGTTTCA+AGG - chr5_4:1524420-1524439 Msa0828680:intron 35.0%
TTCTCCCATTGATGTTTCAA+GGG - chr5_4:1524421-1524440 Msa0828680:intron 35.0%
TCATTATTAACACAACTCCC+AGG + chr5_4:1524494-1524513 None:intergenic 35.0%
ACAGAAAAGGAAAAAGGATC+AGG - chr5_4:1524632-1524651 Msa0828680:CDS 35.0%
AGAAATAGCAAATGACTCTC+AGG - chr5_4:1524703-1524722 Msa0828680:CDS 35.0%
TTCTTACTTCCCTTTCCTTA+AGG - chr5_4:1524792-1524811 Msa0828680:intron 35.0%
!!! AGTTTTTTCAAGAGCAGCTA+TGG + chr5_4:1524892-1524911 None:intergenic 35.0%
TCTTGAAAAAACTTCCCATG+AGG - chr5_4:1524899-1524918 Msa0828680:CDS 35.0%
ATCTGTTGAAAAAGCCTCAT+GGG + chr5_4:1524916-1524935 None:intergenic 35.0%
AATCTGTTGAAAAAGCCTCA+TGG + chr5_4:1524917-1524936 None:intergenic 35.0%
! AATCTAATTGCCGCAACTTT+TGG + chr5_4:1524953-1524972 None:intergenic 35.0%
!!! TGTTGCTACATTTTAAGGTG+TGG - chr5_4:1525069-1525088 Msa0828680:CDS 35.0%
!!! GTTGCTACATTTTAAGGTGT+GGG - chr5_4:1525070-1525089 Msa0828680:CDS 35.0%
! GAAACAATGAGTTGGAATGT+TGG - chr5_4:1525200-1525219 Msa0828680:CDS 35.0%
AAACATCGTCGTTATAACCA+TGG + chr5_4:1525432-1525451 None:intergenic 35.0%
! GGTTATAACGACGATGTTTT+TGG - chr5_4:1525433-1525452 Msa0828680:CDS 35.0%
TCAACTCTCCATTTAACAGA+CGG + chr5_4:1525575-1525594 None:intergenic 35.0%
! TGAATGCTGCTAGCTTAAAT+TGG + chr5_4:1525744-1525763 None:intergenic 35.0%
!! GAGCATTTGGAACTTTTTCT+AGG - chr5_4:1525929-1525948 Msa0828680:intron 35.0%
!! GCATTTGGAACTTTTTCTAG+GGG - chr5_4:1525931-1525950 Msa0828680:intron 35.0%
!! CATTTGGAACTTTTTCTAGG+GGG - chr5_4:1525932-1525951 Msa0828680:intron 35.0%
TTTCAAGGATATAAGGGAAG+AGG + chr5_4:1525975-1525994 None:intergenic 35.0%
CAAAAATGCAACAAAAAGGG+GGG + chr5_4:1526013-1526032 None:intergenic 35.0%
TCTAGTCATTTAACCCAACA+GGG + chr5_4:1526044-1526063 None:intergenic 35.0%
TTCTAGTCATTTAACCCAAC+AGG + chr5_4:1526045-1526064 None:intergenic 35.0%
AACTCTCAGAATACTGGAAA+TGG - chr5_4:1526222-1526241 Msa0828680:intron 35.0%
AAATGGCTCATGCTTTCAAA+CGG - chr5_4:1526239-1526258 Msa0828680:intron 35.0%
! AAGCATCTTTTATTGAGGAC+AGG + chr5_4:1526436-1526455 None:intergenic 35.0%
TGTCATCTATTTGAGGGAAA+GGG + chr5_4:1526656-1526675 None:intergenic 35.0%
TTCAAGATGCACAGATTCTA+AGG - chr5_4:1526687-1526706 Msa0828680:intron 35.0%
CCAAGTAAAAAATGCAAACC+TGG + chr5_4:1526756-1526775 None:intergenic 35.0%
!!! CCAGGTTTGCATTTTTTACT+TGG - chr5_4:1526753-1526772 Msa0828680:CDS 35.0%
! TCTAAAGCTATAGGACACAT+TGG + chr5_4:1526799-1526818 None:intergenic 35.0%
!! AAACCAAGCTCTAAAGCTAT+AGG + chr5_4:1526808-1526827 None:intergenic 35.0%
! TCAAATTTTGCAGTGGAAGA+TGG + chr5_4:1526962-1526981 None:intergenic 35.0%
TGAACCATCTATTCCTGATT+TGG - chr5_4:1527054-1527073 Msa0828680:five_prime_UTR 35.0%
CTCAACATTGTCATCTTTCT+TGG + chr5_4:1527104-1527123 None:intergenic 35.0%
CAAGAAAGATGACAATGTTG+AGG - chr5_4:1527102-1527121 Msa0828680:five_prime_UTR 35.0%
! TCTACATACACAACTTTTGC+TGG + chr5_4:1527204-1527223 None:intergenic 35.0%
! AGTGATCTTTTGGTCCTAAA+GGG - chr5_4:1527250-1527269 Msa0828680:intron 35.0%
TGCAATTAACACTACCCTTT+AGG + chr5_4:1527267-1527286 None:intergenic 35.0%
!! TCGGGTTGATCAATCAAGAT+TGG + chr5_4:1522239-1522258 None:intergenic 40.0%
TCTTCCTAGTGTCAATTTCG+AGG - chr5_4:1522309-1522328 Msa0828680:three_prime_UTR 40.0%
CTTCCTAGTGTCAATTTCGA+GGG - chr5_4:1522310-1522329 Msa0828680:three_prime_UTR 40.0%
AATCCCTCGAAATTGACACT+AGG + chr5_4:1522316-1522335 None:intergenic 40.0%
TACTAATTTACCCTTGGGTC+AGG - chr5_4:1522396-1522415 Msa0828680:three_prime_UTR 40.0%
ACTAATTTACCCTTGGGTCA+GGG - chr5_4:1522397-1522416 Msa0828680:three_prime_UTR 40.0%
TGCGAAGGAAGAAGAGAAAA+AGG - chr5_4:1522702-1522721 Msa0828680:intron 40.0%
!! TTTTGATCGGTTTTTGCTGG+AGG - chr5_4:1523044-1523063 Msa0828680:intron 40.0%
TAGGGTTTAGCATGCATGAA+AGG + chr5_4:1523103-1523122 None:intergenic 40.0%
GACGGAAGAGGAAACATATT+TGG + chr5_4:1523292-1523311 None:intergenic 40.0%
AGCTATGGATTCGTTTGTGA+CGG + chr5_4:1523388-1523407 None:intergenic 40.0%
GATAATTAAAGAGGGGAGAG+CGG + chr5_4:1523417-1523436 None:intergenic 40.0%
GCTCTCCCCTCTTTAATTAT+CGG - chr5_4:1523416-1523435 Msa0828680:intron 40.0%
CTCTCCCCTCTTTAATTATC+GGG - chr5_4:1523417-1523436 Msa0828680:intron 40.0%
TCTCCCCTCTTTAATTATCG+GGG - chr5_4:1523418-1523437 Msa0828680:intron 40.0%
GATCCCCGATAATTAAAGAG+GGG + chr5_4:1523424-1523443 None:intergenic 40.0%
GAGATCCCCGATAATTAAAG+AGG + chr5_4:1523426-1523445 None:intergenic 40.0%
TTTAATTATCGGGGATCTCC+TGG - chr5_4:1523427-1523446 Msa0828680:intron 40.0%
CTTTCATCGGAGAAAAATCC+AGG + chr5_4:1523448-1523467 None:intergenic 40.0%
TCCGATGAAAGTAACGATGT+TGG - chr5_4:1523457-1523476 Msa0828680:intron 40.0%
! CCCAACATCGTTACTTTCAT+CGG + chr5_4:1523461-1523480 None:intergenic 40.0%
CCGATGAAAGTAACGATGTT+GGG - chr5_4:1523458-1523477 Msa0828680:intron 40.0%
CGAATTCGATATCGAATCTC+AGG - chr5_4:1523572-1523591 Msa0828680:intron 40.0%
GAGTGATCATAAGAGAGAAG+AGG - chr5_4:1523725-1523744 Msa0828680:intron 40.0%
TCTTCCATCAAGACCCTAAA+TGG - chr5_4:1523833-1523852 Msa0828680:intron 40.0%
! TAGTCCATTTAGGGTCTTGA+TGG + chr5_4:1523840-1523859 None:intergenic 40.0%
GTACTTTAGTGGCAGCATAA+TGG - chr5_4:1523989-1524008 Msa0828680:CDS 40.0%
CTGGAAATCGTGTGATACAA+GGG - chr5_4:1524067-1524086 Msa0828680:intron 40.0%
TTATGCATAACAGACTCTGC+AGG + chr5_4:1524125-1524144 None:intergenic 40.0%
GTCTGTTATGCATAAGTGTG+TGG - chr5_4:1524130-1524149 Msa0828680:intron 40.0%
! ACAAAGGGTGTATGACACTT+TGG - chr5_4:1524214-1524233 Msa0828680:intron 40.0%
! ACACTTTGGAAAGGAAACTC+TGG - chr5_4:1524228-1524247 Msa0828680:intron 40.0%
TCCTCCCTTGAAACATCAAT+GGG + chr5_4:1524428-1524447 None:intergenic 40.0%
GAAACATTCACCGTGACAAA+TGG - chr5_4:1524558-1524577 Msa0828680:intron 40.0%
AAGGAAAGGGAAGTAAGAAC+AGG + chr5_4:1524791-1524810 None:intergenic 40.0%
TTAATCTCAAGGTCAGAAGC+TGG - chr5_4:1524973-1524992 Msa0828680:CDS 40.0%
AAGAGGATTGGATGTGACAA+TGG + chr5_4:1525373-1525392 None:intergenic 40.0%
!!! ATGTCATTTTTTCTCCGCAG+TGG - chr5_4:1525484-1525503 Msa0828680:CDS 40.0%
TCAGTTCATCATTACCACTG+CGG + chr5_4:1525501-1525520 None:intergenic 40.0%
CTTCATTTCATTCAGCAGAC+AGG + chr5_4:1525692-1525711 None:intergenic 40.0%
! TTTTTGTAGACTGTCCCTGT+TGG - chr5_4:1526027-1526046 Msa0828680:intron 40.0%
! TTTTGTAGACTGTCCCTGTT+GGG - chr5_4:1526028-1526047 Msa0828680:intron 40.0%
! CTACGTGAATGTTTTCTGCA+AGG + chr5_4:1526108-1526127 None:intergenic 40.0%
TGCTGAGGAAAAAACCAAGA+AGG - chr5_4:1526534-1526553 Msa0828680:intron 40.0%
!! TGCATGTGTTGTTTCTCATC+AGG + chr5_4:1526562-1526581 None:intergenic 40.0%
! AATTGTAGTGGGAGAAAGGA+AGG + chr5_4:1526595-1526614 None:intergenic 40.0%
CTGTCATCTATTTGAGGGAA+AGG + chr5_4:1526657-1526676 None:intergenic 40.0%
GGCATCTGTCATCTATTTGA+GGG + chr5_4:1526662-1526681 None:intergenic 40.0%
AATCTGTGCATCTTGAACAG+CGG + chr5_4:1526684-1526703 None:intergenic 40.0%
! AAGATGCACAGATTCTAAGG+TGG - chr5_4:1526690-1526709 Msa0828680:intron 40.0%
!! AGATGCACAGATTCTAAGGT+GGG - chr5_4:1526691-1526710 Msa0828680:intron 40.0%
!! TGTCCTATAGCTTTAGAGCT+TGG - chr5_4:1526802-1526821 Msa0828680:CDS 40.0%
ACACATTCCAGCTGAAGAAA+AGG + chr5_4:1526848-1526867 None:intergenic 40.0%
! TGCACTGACCATAGATACAT+TGG - chr5_4:1526910-1526929 Msa0828680:CDS 40.0%
TGAAGATGTTCAGAAGAAGC+TGG - chr5_4:1526979-1526998 Msa0828680:CDS 40.0%
! GATGACCTCTCTAAGAAAAC+AGG - chr5_4:1527031-1527050 Msa0828680:five_prime_UTR 40.0%
! GTTCACCTGTTTTCTTAGAG+AGG + chr5_4:1527039-1527058 None:intergenic 40.0%
! TTCCTTATCAGCCTGTCTTT+TGG + chr5_4:1527128-1527147 None:intergenic 40.0%
! ACTTGCAGACAGTGATCTTT+TGG - chr5_4:1527240-1527259 Msa0828680:five_prime_UTR 40.0%
! CAGTGATCTTTTGGTCCTAA+AGG - chr5_4:1527249-1527268 Msa0828680:intron 40.0%
CAAAGCGGTTGTGTGAGAAA+TGG - chr5_4:1522522-1522541 Msa0828680:CDS 45.0%
GTCTTCTTCGTCATCACTTG+TGG + chr5_4:1522572-1522591 None:intergenic 45.0%
!! TTGCGAAGCTTTGAATGCTG+AGG + chr5_4:1522610-1522629 None:intergenic 45.0%
CAATAACGATAGCGATGCGA+AGG - chr5_4:1522687-1522706 Msa0828680:CDS 45.0%
!! TTTGCATCCTCTGGAGTTTG+AGG + chr5_4:1522733-1522752 None:intergenic 45.0%
TTTCGGGAAAAGGAAGATGG+AGG - chr5_4:1522776-1522795 Msa0828680:intron 45.0%
! TATCTGTTTCCAAGCGTTGC+TGG - chr5_4:1523596-1523615 Msa0828680:intron 45.0%
ATTATCAGTCCAGCAACGCT+TGG + chr5_4:1523608-1523627 None:intergenic 45.0%
AAAAGATGTGCCACATTGGG+AGG - chr5_4:1523651-1523670 Msa0828680:intron 45.0%
CTTTAGTGGCAGCATAATGG+TGG - chr5_4:1523992-1524011 Msa0828680:CDS 45.0%
GAAGCTGAAAAAAAAGGCGG+TGG - chr5_4:1524041-1524060 Msa0828680:intron 45.0%
AAAAAAAAGGCGGTGGAAGC+TGG - chr5_4:1524048-1524067 Msa0828680:intron 45.0%
GCTGGAAATCGTGTGATACA+AGG - chr5_4:1524066-1524085 Msa0828680:intron 45.0%
! CCAGGATGTTGCTTACGTTT+CGG + chr5_4:1524185-1524204 None:intergenic 45.0%
ATCCTGGCTTCATCGTACAA+AGG - chr5_4:1524198-1524217 Msa0828680:intron 45.0%
TCCTGGCTTCATCGTACAAA+GGG - chr5_4:1524199-1524218 Msa0828680:intron 45.0%
! GGGTGTATGACACTTTGGAA+AGG - chr5_4:1524219-1524238 Msa0828680:intron 45.0%
! ACTCTGGAAGCTGACTGATA+AGG - chr5_4:1524244-1524263 Msa0828680:intron 45.0%
GCTGACTGATAAGGACTATG+AGG - chr5_4:1524253-1524272 Msa0828680:intron 45.0%
CAAGCTCGTCAATTTCTTGC+TGG + chr5_4:1524286-1524305 None:intergenic 45.0%
TCCCATTGATGTTTCAAGGG+AGG - chr5_4:1524424-1524443 Msa0828680:intron 45.0%
CTCCTCCCTTGAAACATCAA+TGG + chr5_4:1524429-1524448 None:intergenic 45.0%
CATTGATGTTTCAAGGGAGG+AGG - chr5_4:1524427-1524446 Msa0828680:intron 45.0%
GTGTTTCAGGCTTGGAATGT+TGG + chr5_4:1524472-1524491 None:intergenic 45.0%
ATTCCAAGCCTGAAACACCT+GGG - chr5_4:1524474-1524493 Msa0828680:intron 45.0%
CATTCACCGTGACAAATGGT+TGG - chr5_4:1524562-1524581 Msa0828680:intron 45.0%
ACCTCTCCAACCATTTGTCA+CGG + chr5_4:1524571-1524590 None:intergenic 45.0%
AGCAAATGACTCTCAGGACA+AGG - chr5_4:1524709-1524728 Msa0828680:intron 45.0%
GCAAATGACTCTCAGGACAA+GGG - chr5_4:1524710-1524729 Msa0828680:intron 45.0%
! AGAGTTCCGAGTCTTTTGTG+TGG - chr5_4:1524847-1524866 Msa0828680:CDS 45.0%
ATCTGGCCACACAAAAGACT+CGG + chr5_4:1524856-1524875 None:intergenic 45.0%
TGTCACATCCAATCCTCTTG+CGG - chr5_4:1525374-1525393 Msa0828680:CDS 45.0%
CAAAAACACCGCAAGAGGAT+TGG + chr5_4:1525385-1525404 None:intergenic 45.0%
! CAATCCTCTTGCGGTGTTTT+TGG - chr5_4:1525383-1525402 Msa0828680:CDS 45.0%
TTTGGCCTGCGAAATCAATG+TGG - chr5_4:1525401-1525420 Msa0828680:CDS 45.0%
AAATCAATGTGGCAGCACCA+TGG - chr5_4:1525412-1525431 Msa0828680:CDS 45.0%
GGTACGAGATTGTCTAGATG+TGG - chr5_4:1525635-1525654 Msa0828680:intron 45.0%
!! GAACTTTTTCTAGGGGGAAG+TGG - chr5_4:1525938-1525957 Msa0828680:intron 45.0%
! AGGGTGGTCGACATTTTTCA+AGG + chr5_4:1525990-1526009 None:intergenic 45.0%
AATGCAACAAAAAGGGGGGA+GGG + chr5_4:1526009-1526028 None:intergenic 45.0%
AAATGCAACAAAAAGGGGGG+AGG + chr5_4:1526010-1526029 None:intergenic 45.0%
TTTCTCATCAGGCTCCTTCT+TGG + chr5_4:1526551-1526570 None:intergenic 45.0%
GGGCATCTGTCATCTATTTG+AGG + chr5_4:1526663-1526682 None:intergenic 45.0%
ATCTGTGCATCTTGAACAGC+GGG + chr5_4:1526683-1526702 None:intergenic 45.0%
!! AGATTCTAAGGTGGGCTTGA+GGG - chr5_4:1526699-1526718 Msa0828680:intron 45.0%
TTGAGGGAGATTATCCATGC+TGG - chr5_4:1526715-1526734 Msa0828680:intron 45.0%
ATAGGACACATTGGTCCGTT+TGG + chr5_4:1526790-1526809 None:intergenic 45.0%
! TGTTCTGCCTTTTCTTCAGC+TGG - chr5_4:1526838-1526857 Msa0828680:CDS 45.0%
CAATGTTGAGGCCAAAAGAC+AGG - chr5_4:1527114-1527133 Msa0828680:five_prime_UTR 45.0%
!!! TATAAAATTTATGTTTTATT+TGG - chr5_4:1524741-1524760 Msa0828680:intron 5.0%
!!! ATAAAATTTATGTTTTATTT+GGG - chr5_4:1524742-1524761 Msa0828680:intron 5.0%
!! AATAATTATAATTATTTCAA+GGG + chr5_4:1525021-1525040 None:intergenic 5.0%
!! TAATAATTATAATTATTTCA+AGG + chr5_4:1525022-1525041 None:intergenic 5.0%
AGATTGAGACCCTGACCCAA+GGG + chr5_4:1522409-1522428 None:intergenic 50.0%
TAGATTGAGACCCTGACCCA+AGG + chr5_4:1522410-1522429 None:intergenic 50.0%
CACGGAATTTGACTCACGAC+AGG + chr5_4:1522467-1522486 None:intergenic 50.0%
!! AGCTTTGAATGCTGAGGTGG+CGG + chr5_4:1522604-1522623 None:intergenic 50.0%
!! CGAAGCTTTGAATGCTGAGG+TGG + chr5_4:1522607-1522626 None:intergenic 50.0%
ACCCTAAGCGGTTCACCAAT+CGG + chr5_4:1522757-1522776 None:intergenic 50.0%
TGGTGAACCGCTTAGGGTTT+CGG - chr5_4:1522759-1522778 Msa0828680:intron 50.0%
! CCTTTTCCCGAAACCCTAAG+CGG + chr5_4:1522769-1522788 None:intergenic 50.0%
GGGTTTCGGGAAAAGGAAGA+TGG - chr5_4:1522773-1522792 Msa0828680:intron 50.0%
TCCTGTAATGCTTGTGCCTG+AGG - chr5_4:1522931-1522950 Msa0828680:intron 50.0%
TCCTCAGGCACAAGCATTAC+AGG + chr5_4:1522935-1522954 None:intergenic 50.0%
! AGAAAGCGCAACACAGTGAG+AGG + chr5_4:1523336-1523355 None:intergenic 50.0%
GGCGAGACAAAGATGAGAAG+AGG + chr5_4:1523361-1523380 None:intergenic 50.0%
GGGTCTTGATGGAAGACATG+TGG + chr5_4:1523829-1523848 None:intergenic 50.0%
ACTCTGCAGGAACCTCATCA+CGG + chr5_4:1524112-1524131 None:intergenic 50.0%
CCGAAACGTAAGCAACATCC+TGG - chr5_4:1524182-1524201 Msa0828680:intron 50.0%
ACCCTTTGTACGATGAAGCC+AGG + chr5_4:1524203-1524222 None:intergenic 50.0%
GATGTTTCAAGGGAGGAGGA+AGG - chr5_4:1524431-1524450 Msa0828680:intron 50.0%
CATTCCAAGCCTGAAACACC+TGG - chr5_4:1524473-1524492 Msa0828680:intron 50.0%
ACACAACTCCCAGGTGTTTC+AGG + chr5_4:1524485-1524504 None:intergenic 50.0%
ACCGTGACAAATGGTTGGAG+AGG - chr5_4:1524567-1524586 Msa0828680:intron 50.0%
ATGGCTGAAACAGCAGCATC+TGG + chr5_4:1524873-1524892 None:intergenic 50.0%
!! TGCTGCCACATTGATTTCGC+AGG + chr5_4:1525409-1525428 None:intergenic 50.0%
CTAGCACGCCGTCTGTTAAA+TGG - chr5_4:1525564-1525583 Msa0828680:CDS 50.0%
!! CAGATTCTAAGGTGGGCTTG+AGG - chr5_4:1526698-1526717 Msa0828680:intron 50.0%
AACGGTCATCATGTCCAGCA+TGG + chr5_4:1526732-1526751 None:intergenic 50.0%
TGGACATGATGACCGTTACC+AGG - chr5_4:1526735-1526754 Msa0828680:CDS 50.0%
GTGTTGCCTGTGGTAATTCC+TGG - chr5_4:1526864-1526883 Msa0828680:CDS 50.0%
GGCATACCAGGAATTACCAC+AGG + chr5_4:1526873-1526892 None:intergenic 50.0%
TCAGTGCAGACACCTCATCA+CGG + chr5_4:1526898-1526917 None:intergenic 50.0%
! AGCTGAGTTTTCAGAGCCAC+GGG + chr5_4:1527011-1527030 None:intergenic 50.0%
! CAGCTGAGTTTTCAGAGCCA+CGG + chr5_4:1527012-1527031 None:intergenic 50.0%
GCGGCCAAATCAGGAATAGA+TGG + chr5_4:1527061-1527080 None:intergenic 50.0%
CTTGCCAAATGACTTCTGGG+CGG + chr5_4:1527080-1527099 None:intergenic 50.0%
GGGCTTGCCAAATGACTTCT+GGG + chr5_4:1527083-1527102 None:intergenic 50.0%
TGGGCTTGCCAAATGACTTC+TGG + chr5_4:1527084-1527103 None:intergenic 50.0%
GGCCAAAAGACAGGCTGATA+AGG - chr5_4:1527123-1527142 Msa0828680:five_prime_UTR 50.0%
! TTTGAATGCTGAGGTGGCGG+TGG + chr5_4:1522601-1522620 None:intergenic 55.0%
GGATTCGCCTCAAACTCCAG+AGG - chr5_4:1522723-1522742 Msa0828680:intron 55.0%
! CCAATCGGCTTTGCATCCTC+TGG + chr5_4:1522742-1522761 None:intergenic 55.0%
CCAGAGGATGCAAAGCCGAT+TGG - chr5_4:1522739-1522758 Msa0828680:intron 55.0%
AGCCGATTGGTGAACCGCTT+AGG - chr5_4:1522752-1522771 Msa0828680:intron 55.0%
GCCGATTGGTGAACCGCTTA+GGG - chr5_4:1522753-1522772 Msa0828680:intron 55.0%
GGTGAACCGCTTAGGGTTTC+GGG - chr5_4:1522760-1522779 Msa0828680:intron 55.0%
CCGCTTAGGGTTTCGGGAAA+AGG - chr5_4:1522766-1522785 Msa0828680:intron 55.0%
ACACAGTGAGAGGAGGTTGG+CGG + chr5_4:1523326-1523345 None:intergenic 55.0%
GCAACACAGTGAGAGGAGGT+TGG + chr5_4:1523329-1523348 None:intergenic 55.0%
AAGCGCAACACAGTGAGAGG+AGG + chr5_4:1523333-1523352 None:intergenic 55.0%
GGATTCGTTTGTGACGGCAG+CGG + chr5_4:1523382-1523401 None:intergenic 55.0%
GTGCCACATTGGGAGGTTCA+AGG - chr5_4:1523658-1523677 Msa0828680:intron 55.0%
CCACATTGGGAGGTTCAAGG+CGG - chr5_4:1523661-1523680 Msa0828680:intron 55.0%
AGTGGCAGCATAATGGTGGC+TGG - chr5_4:1523996-1524015 Msa0828680:CDS 55.0%
GCATAATGGTGGCTGGACAG+TGG - chr5_4:1524003-1524022 Msa0828680:intron 55.0%
TGTCCTCCTGAACAGCAGGA+GGG + chr5_4:1524364-1524383 None:intergenic 55.0%
ATGTCCTCCTGAACAGCAGG+AGG + chr5_4:1524365-1524384 None:intergenic 55.0%
GTCATGTCCTCCTGAACAGC+AGG + chr5_4:1524368-1524387 None:intergenic 55.0%
ACTCCCAGGTGTTTCAGGCT+TGG + chr5_4:1524480-1524499 None:intergenic 55.0%
CTCTCAGGACAAGGGTCAGA+AGG - chr5_4:1524718-1524737 Msa0828680:intron 55.0%
CAGGCCAAAAACACCGCAAG+AGG + chr5_4:1525390-1525409 None:intergenic 55.0%
TCAGGAGGGTTTGACTGCTG+AGG - chr5_4:1526519-1526538 Msa0828680:intron 55.0%
CAGCTGGAATGTGTTGCCTG+TGG - chr5_4:1526854-1526873 Msa0828680:CDS 55.0%
CAGTGCAGACACCTCATCAC+GGG + chr5_4:1526897-1526916 None:intergenic 55.0%
! CTGAGTTTTCAGAGCCACGG+GGG + chr5_4:1527009-1527028 None:intergenic 55.0%
! GCTGAGTTTTCAGAGCCACG+GGG + chr5_4:1527010-1527029 None:intergenic 55.0%
TTGGCCGCCCAGAAGTCATT+TGG - chr5_4:1527073-1527092 Msa0828680:five_prime_UTR 55.0%
GGTGAATCGGCGCTTCACTC+AGG - chr5_4:1522543-1522562 Msa0828680:CDS 60.0%
GAATCGGCGCTTCACTCAGG+TGG - chr5_4:1522546-1522565 Msa0828680:CDS 60.0%
CCGCCTTGAACCTCCCAATG+TGG + chr5_4:1523664-1523683 None:intergenic 60.0%
CATTGGGAGGTTCAAGGCGG+CGG - chr5_4:1523664-1523683 Msa0828680:intron 60.0%
ATTGGGAGGTTCAAGGCGGC+GGG - chr5_4:1523665-1523684 Msa0828680:intron 60.0%
!! AGGTTCAAGGCGGTGGGCTA+CGG - chr5_4:1523691-1523710 Msa0828680:intron 60.0%
ACAGCAGGAGGGGCTTCTTC+AGG + chr5_4:1524353-1524372 None:intergenic 60.0%
AGAAGCCCCTCCTGCTGTTC+AGG - chr5_4:1524355-1524374 Msa0828680:intron 60.0%
GTCCTCCTGAACAGCAGGAG+GGG + chr5_4:1524363-1524382 None:intergenic 60.0%
GCAACAAAAAGGGGGGAGGG+TGG + chr5_4:1526006-1526025 None:intergenic 60.0%
! CTCATCACGGGAGGCATACC+AGG + chr5_4:1526885-1526904 None:intergenic 60.0%
CTGGTATGCCTCCCGTGATG+AGG - chr5_4:1526883-1526902 Msa0828680:CDS 60.0%
TGCAGACACCTCATCACGGG+AGG + chr5_4:1526894-1526913 None:intergenic 60.0%
GACTTCTGGGCGGCCAAATC+AGG + chr5_4:1527070-1527089 None:intergenic 60.0%
GAGAGGAGGTTGGCGGCGAT+GGG + chr5_4:1523319-1523338 None:intergenic 65.0%
TGAGAGGAGGTTGGCGGCGA+TGG + chr5_4:1523320-1523339 None:intergenic 65.0%
GGAGAGCGGCGACAGAGCTA+TGG + chr5_4:1523403-1523422 None:intergenic 65.0%
GGGAGGAGGTTCAAGGCGGT+GGG - chr5_4:1523685-1523704 Msa0828680:intron 65.0%
!! TTCAAGGCGGTGGGCTACGG+TGG - chr5_4:1523694-1523713 Msa0828680:intron 65.0%
AGCCCCTCCTGCTGTTCAGG+AGG - chr5_4:1524358-1524377 Msa0828680:intron 65.0%
AAGAAGCTGGTGAGCCCCCG+TGG - chr5_4:1526992-1527011 Msa0828680:CDS 65.0%
GCGATGGGCAGCGACGGAAG+AGG + chr5_4:1523304-1523323 None:intergenic 70.0%
TTGGCGGCGATGGGCAGCGA+CGG + chr5_4:1523310-1523329 None:intergenic 70.0%
AGGTTCAAGGCGGCGGGAGG+AGG - chr5_4:1523671-1523690 Msa0828680:intron 70.0%
AGGCGGCGGGAGGAGGTTCA+AGG - chr5_4:1523678-1523697 Msa0828680:intron 70.0%
CGGCGGGAGGAGGTTCAAGG+CGG - chr5_4:1523681-1523700 Msa0828680:intron 70.0%
CGGGAGGAGGTTCAAGGCGG+TGG - chr5_4:1523684-1523703 Msa0828680:intron 70.0%
GGGAGGTTCAAGGCGGCGGG+AGG - chr5_4:1523668-1523687 Msa0828680:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 1522190 1527381 1522190 ID=Msa0828680;Name=Msa0828680
chr5_4 mRNA 1522190 1527381 1522190 ID=Msa0828680-mRNA-1;Parent=Msa0828680;Name=Msa0828680-mRNA-1;_AED=0.28;_eAED=0.28;_QI=330|0.85|1|1|0.71|0.75|8|231|567
chr5_4 exon 1522190 1522714 1522190 ID=Msa0828680-mRNA-1:exon:398;Parent=Msa0828680-mRNA-1
chr5_4 exon 1522989 1523048 1522989 ID=Msa0828680-mRNA-1:exon:397;Parent=Msa0828680-mRNA-1
chr5_4 exon 1523936 1524019 1523936 ID=Msa0828680-mRNA-1:exon:396;Parent=Msa0828680-mRNA-1
chr5_4 exon 1524588 1524722 1524588 ID=Msa0828680-mRNA-1:exon:395;Parent=Msa0828680-mRNA-1
chr5_4 exon 1524832 1525593 1524832 ID=Msa0828680-mRNA-1:exon:394;Parent=Msa0828680-mRNA-1
chr5_4 exon 1526583 1526645 1526583 ID=Msa0828680-mRNA-1:exon:393;Parent=Msa0828680-mRNA-1
chr5_4 exon 1526725 1527264 1526725 ID=Msa0828680-mRNA-1:exon:392;Parent=Msa0828680-mRNA-1
chr5_4 exon 1527286 1527381 1527286 ID=Msa0828680-mRNA-1:exon:391;Parent=Msa0828680-mRNA-1
chr5_4 five_prime_UTR 1527286 1527381 1527286 ID=Msa0828680-mRNA-1:five_prime_utr;Parent=Msa0828680-mRNA-1
chr5_4 five_prime_UTR 1527031 1527264 1527031 ID=Msa0828680-mRNA-1:five_prime_utr;Parent=Msa0828680-mRNA-1
chr5_4 CDS 1526725 1527030 1526725 ID=Msa0828680-mRNA-1:cds;Parent=Msa0828680-mRNA-1
chr5_4 CDS 1526583 1526645 1526583 ID=Msa0828680-mRNA-1:cds;Parent=Msa0828680-mRNA-1
chr5_4 CDS 1524832 1525593 1524832 ID=Msa0828680-mRNA-1:cds;Parent=Msa0828680-mRNA-1
chr5_4 CDS 1524588 1524722 1524588 ID=Msa0828680-mRNA-1:cds;Parent=Msa0828680-mRNA-1
chr5_4 CDS 1523936 1524019 1523936 ID=Msa0828680-mRNA-1:cds;Parent=Msa0828680-mRNA-1
chr5_4 CDS 1522989 1523048 1522989 ID=Msa0828680-mRNA-1:cds;Parent=Msa0828680-mRNA-1
chr5_4 CDS 1522421 1522714 1522421 ID=Msa0828680-mRNA-1:cds;Parent=Msa0828680-mRNA-1
chr5_4 three_prime_UTR 1522190 1522420 1522190 ID=Msa0828680-mRNA-1:three_prime_utr;Parent=Msa0828680-mRNA-1
Gene Sequence

>Msa0828680

ATGGTGAATCGGCGCTTCACTCAGGTGGCCACAAGTGATGACGAAGAAGACGAAGCACCACCGCCACCTCAGCATTCAAAGCTTCGCAAACGAAAGAAGATGAAGCTTATAGACGAAGAAGAAGATGAAGAATCCAACGACAATAGCAATAACGATAGCGATGCGAAGGAAGAAGAGAAAAAGGATTCGCCTCAAACTCCAGAGGATGCAAAGCCGATTGGTGAACCGCTTAGGGTTTCGGGAAAAGGAAGATGGAGGAAGAGACATTACGAATCGTTTGAGTTTGATGGAAATCAATATTCTCTTGAGGATCCTGTAATGCTTGTGCCTGAGGATAAAGAACAAAAACCATATGTTGCTATAATCAAGGACATTATACAGTACTTTAGTGGCAGCATAATGGTGGCTGGACAGTGGTTTTATCGTCCTGAAGAAGCTGAAAAAAAAGGCGGTGGAAGCTGGAAATCGTGTGATACAAGGGAGCTTTTTTATAGTTTTCACCGTGATGAGGTTCCTGCAGAGTCTGTTATGCATAAGTGTGTGGTGCATTTTGTGCCCTTGAACAAACAGTTTCCGAAACGTAAGCAACATCCTGGCTTCATCGTACAAAGGGTGTATGACACTTTGGAAAGGAAACTCTGGAAGCTGACTGATAAGGACTATGAGGATGTTAACCAGCAAGAAATTGACGAGCTTGTTCAGAAAACTGTAAAACGCATCGGTGATCTACTCGACATTGAGCCTGAAGAAGCCCCTCCTGCTGTTCAGGAGGACATGACAAAAAATAAAAGAAGCTTAAGGAGAAAGAGCATTTCTCCCATTGATGTTTCAAGGGAGGAGGAAGGAGTTTCTAAGAGTGACCAACATTCCAAGCCTGAAACACCTGGGAGTTGTGTTAATAATGACTCAGAGCATCATCGCATATTAGTAAATTTCAATGCACTAACTGGAAACATTCACCGTGACAAATGGTTGGAGAGGTTGCTTCAACACATTCAGTACATGTGTAATAATGATGATAGTACAGAAAAGGAAAAAGGATCAGGAAATGCCGAGTCTGATGCAATAAAAAATAAAAGCAATGATAGAACTTCAGAAATAGCAAATGACTCTCAGGACAAGGGTCAGAAGAGTTCCGAGTCTTTTGTGTGGCCAGATGCTGCTGTTTCAGCCATAGCTGCTCTTGAAAAAACTTCCCATGAGGCTTTTTCAACAGATTTTCAGAAGTATAACCAAAAGTTGCGGCAATTAGATTTTAATCTCAAGAACAATGCATTGCTAGCACGCCGTCTGTTAAATGGAGAGTTGAAACCTTCTAAAATTTTGAATATGACACCCATTGAATTAAAGGAGGGTTTGACTGCTGAGGAAAAAACCAAGAAGGAGCCTGATGAGAAACAACACATGCAACTGGAATGTGTTGCCTGTGGTAATTCCTGGTATGCCTCCCGTGATGAGGTGTCTGCACTGACCATAGATACATTGGATTCAAAGAGAAGCATGAGCACAACACCATCTTCCACTGCAAAATTTGAAGATGTTCAGAAGAAGCTGGTGAGCCCCCGTGGCTCTGAAAACTCAGCTGATGACCTCTCTAAGAAAACAGGTGAACCATCTATTCCTGATTTGGCCGCCCAGAAGTCATTTGGCAAGCCCAAGAAAGATGACAATGTTGAGGCCAAAAGACAGGCTGATAAGGAATGA

Protein sequence

>Msa0828680

MVNRRFTQVATSDDEEDEAPPPPQHSKLRKRKKMKLIDEEEDEESNDNSNNDSDAKEEEKKDSPQTPEDAKPIGEPLRVSGKGRWRKRHYESFEFDGNQYSLEDPVMLVPEDKEQKPYVAIIKDIIQYFSGSIMVAGQWFYRPEEAEKKGGGSWKSCDTRELFYSFHRDEVPAESVMHKCVVHFVPLNKQFPKRKQHPGFIVQRVYDTLERKLWKLTDKDYEDVNQQEIDELVQKTVKRIGDLLDIEPEEAPPAVQEDMTKNKRSLRRKSISPIDVSREEEGVSKSDQHSKPETPGSCVNNDSEHHRILVNFNALTGNIHRDKWLERLLQHIQYMCNNDDSTEKEKGSGNAESDAIKNKSNDRTSEIANDSQDKGQKSSESFVWPDAAVSAIAALEKTSHEAFSTDFQKYNQKLRQLDFNLKNNALLARRLLNGELKPSKILNMTPIELKEGLTAEEKTKKEPDEKQHMQLECVACGNSWYASRDEVSALTIDTLDSKRSMSTTPSSTAKFEDVQKKLVSPRGSENSADDLSKKTGEPSIPDLAAQKSFGKPKKDDNVEAKRQADKE*