AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1358860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1358860 MtrunA17_Chr4g0072511 98.208 279 5 0 1 279 1 279 0.0 557
Msa1358860 MtrunA17_Chr6g0452811 45.552 281 148 3 1 279 1 278 7.48e-79 240
Msa1358860 MtrunA17_Chr7g0216561 42.806 278 156 2 2 279 3 277 1.74e-76 234
Msa1358860 MtrunA17_Chr5g0401201 43.369 279 155 2 1 279 1 276 5.39e-76 233
Msa1358860 MtrunA17_Chr8g0362621 41.577 279 160 2 1 279 1 276 5.82e-73 225
Msa1358860 MtrunA17_Chr1g0152591 39.928 278 164 2 2 279 3 277 3.78e-67 210
Msa1358860 MtrunA17_Chr4g0060181 25.430 291 158 6 1 279 1 244 1.83e-22 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1358860 AT5G57490.1 58.065 279 112 3 1 279 1 274 8.86e-111 321
Msa1358860 AT5G15090.1 44.086 279 151 4 1 279 1 274 8.12e-77 235
Msa1358860 AT5G15090.2 44.086 279 151 4 1 279 1 274 8.12e-77 235
Msa1358860 AT5G67500.3 44.086 279 153 3 1 279 1 276 8.37e-77 235
Msa1358860 AT3G01280.1 43.011 279 156 2 1 279 1 276 8.21e-74 227
Msa1358860 AT5G67500.1 43.284 268 150 2 1 268 1 266 5.70e-72 223
Msa1358860 AT5G67500.2 40.523 306 152 4 1 279 1 303 1.31e-71 223
Msa1358860 AT3G49920.1 32.258 279 136 4 1 279 1 226 1.67e-40 140
Msa1358860 AT3G49920.2 43.011 93 51 1 1 93 1 91 1.84e-16 74.3
Msa1358860 AT3G49920.4 43.011 93 51 1 1 93 1 91 1.84e-16 74.3
Msa1358860 AT3G49920.3 45.679 81 44 0 1 81 1 81 1.50e-15 71.2

Find 111 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATAGGCAAACCAGTTTA+AGG 0.228425 tig0016544:-12656 None:intergenic
GATAGGGTTATGAGTGAATT+TGG 0.233277 tig0016544:-12566 None:intergenic
CAGACTACAAGCATGTTTCT+TGG 0.237224 tig0016544:+13256 Msa1358860:three_prime_UTR
TTGTACTGCCATTCTATATC+TGG 0.249506 tig0016544:+12882 Msa1358860:three_prime_UTR
ATTGGTTCACCTGCCAAATT+TGG 0.260825 tig0016544:+12614 Msa1358860:CDS
GGTTTAGTTCTCATTCATTA+TGG 0.299570 tig0016544:+8141 Msa1358860:exon
TGGAAGCAAAGATATATCTA+TGG 0.346298 tig0016544:+10928 Msa1358860:CDS
GCAGCAACTGTTAATCCATC+TGG 0.352067 tig0016544:-12404 None:intergenic
CTATATCTGGCATGAGTTAT+GGG 0.353848 tig0016544:+12895 Msa1358860:three_prime_UTR
TTTCCTAGTGATTCATGGTC+AGG 0.356865 tig0016544:+12929 Msa1358860:three_prime_UTR
AGAGAGAGCGAGACCAAATT+TGG 0.357430 tig0016544:-12627 None:intergenic
TCTATATCTGGCATGAGTTA+TGG 0.364474 tig0016544:+12894 Msa1358860:three_prime_UTR
ACAAATTATACTGATTCCTT+TGG 0.365877 tig0016544:-12779 None:intergenic
CTCTCTCTCAAGCCTTAAAC+TGG 0.367778 tig0016544:+12644 Msa1358860:exon
CTGAGAACAGATTTACCTTT+GGG 0.368712 tig0016544:+12453 Msa1358860:CDS
GCAGCTATTGATTCAAGTAT+TGG 0.376139 tig0016544:+10866 Msa1358860:CDS
TGGAGTCATACTCGGCAGAT+AGG 0.385640 tig0016544:-12583 None:intergenic
TTGGAGCTTTCTGCTGCAAT+TGG 0.386691 tig0016544:+10908 Msa1358860:CDS
GGACACCGGGTAAATAAAAC+TGG 0.387694 tig0016544:+13277 Msa1358860:three_prime_UTR
TGTTTATGCAGGGCTGATAA+AGG 0.390368 tig0016544:+12341 Msa1358860:intron
ATAAGTGTTGCAGAGAAATC+TGG 0.396923 tig0016544:-11022 None:intergenic
CTTGAACCCAGCCCCTCAAT+TGG 0.403062 tig0016544:+10889 Msa1358860:CDS
GCCTCCACGCTCGTTGGCAT+TGG 0.411252 tig0016544:-12544 None:intergenic
TTCTGTAGATGAAGTGTTGA+AGG 0.412529 tig0016544:-13035 None:intergenic
TCTTTAACCCTGTGGCTGTA+AGG 0.413704 tig0016544:-9726 None:intergenic
TCTGAGAACAGATTTACCTT+TGG 0.415880 tig0016544:+12452 Msa1358860:CDS
AGTAGATGAGGTGCTGGAGA+TGG 0.418675 tig0016544:+13128 Msa1358860:three_prime_UTR
GAAAGCTCCAATTGAGGGGC+TGG 0.425247 tig0016544:-10896 None:intergenic
AGAGAAATCTGGTTTATTGA+AGG 0.430478 tig0016544:-11011 None:intergenic
CAAGAAACATGCTTGTAGTC+TGG 0.432639 tig0016544:-13255 None:intergenic
AAACATCCCACCAGGGGTAA+TGG 0.433340 tig0016544:-12730 None:intergenic
TGGTTTATTGAAGGCAATCC+CGG 0.439965 tig0016544:-11002 None:intergenic
TACATTGTTGCCATTACCCC+TGG 0.440757 tig0016544:+12720 Msa1358860:three_prime_UTR
ATAGAATGATAAACCACAAT+TGG 0.444320 tig0016544:-13011 None:intergenic
ACCTTTCCTGACTTGTGATC+GGG 0.446241 tig0016544:-10171 None:intergenic
TTAAGCCCTCTCATATCATA+AGG 0.449304 tig0016544:+12752 Msa1358860:three_prime_UTR
AATAAGAGTAGATGAGGTGC+TGG 0.451619 tig0016544:+13122 Msa1358860:three_prime_UTR
CACCTTTCCTGACTTGTGAT+CGG 0.452824 tig0016544:-10172 None:intergenic
ATTACCAATCCAGTGGAACT+TGG 0.458092 tig0016544:-8855 None:intergenic
AAGACTCGATTCAGCGATGA+TGG 0.459917 tig0016544:+12509 Msa1358860:CDS
ATATCTATGGGTGCTGAAGT+TGG 0.460121 tig0016544:+10941 Msa1358860:CDS
ACGGAGTTTCTCACTGTTTG+CGG 0.461264 tig0016544:-7975 None:intergenic
GGCATCTTACATTCATTATG+TGG 0.465201 tig0016544:+12376 Msa1358860:CDS
AGAATGGCAGTACAATAAAT+CGG 0.467685 tig0016544:-12874 None:intergenic
GATTCCAAGTTCCACTGGAT+TGG 0.477100 tig0016544:+8851 Msa1358860:CDS
GTCGTTGAATAAGATTTGAT+AGG 0.482815 tig0016544:-12671 None:intergenic
AACAATGTAAAATGATAGAA+TGG 0.482971 tig0016544:-12706 None:intergenic
AATATACCCGATCACAAGTC+AGG 0.484667 tig0016544:+10165 Msa1358860:CDS
GAAATCTTCTAAAGCGGCAC+AGG 0.485610 tig0016544:+12802 Msa1358860:three_prime_UTR
CATTCTCAAAATATAATGCC+GGG 0.487500 tig0016544:+10984 Msa1358860:CDS
CAAGCATGTTTCTTGGACAC+CGG 0.487657 tig0016544:+13263 Msa1358860:three_prime_UTR
ATTCATGGTCAGGTGAATAG+TGG 0.489953 tig0016544:+12939 Msa1358860:three_prime_UTR
GCCTGCAGACCTCTTGTACA+AGG 0.492635 tig0016544:+8797 Msa1358860:intron
CGGCGGCGACGACGAAGTCC+TGG 0.495174 tig0016544:-7955 None:intergenic
TTCTCATTCATTATGGCTAA+CGG 0.496771 tig0016544:+8148 Msa1358860:exon
CAGCAGAAAGCTCCAATTGA+GGG 0.498390 tig0016544:-10901 None:intergenic
CTTCTCATATGAACCAATTG+TGG 0.508962 tig0016544:+12998 Msa1358860:three_prime_UTR
GGAGTCATACTCGGCAGATA+GGG 0.510982 tig0016544:-12582 None:intergenic
TCATTCTCAAAATATAATGC+CGG 0.512651 tig0016544:+10983 Msa1358860:CDS
TTACAGGGCCTTACAGCCAC+AGG 0.513580 tig0016544:+9718 Msa1358860:intron
AACTCATGCCAGATATAGAA+TGG 0.518821 tig0016544:-12890 None:intergenic
CCACGCTCGTTGGCATTGGA+AGG 0.521657 tig0016544:-12540 None:intergenic
CCTTCCAATGCCAACGAGCG+TGG 0.522608 tig0016544:+12540 Msa1358860:CDS
CCAATCTCAGAAAACGGTGC+TGG 0.527039 tig0016544:-8172 None:intergenic
TGTATCAGAAACGAGTAGCC+AGG 0.531157 tig0016544:+7937 Msa1358860:five_prime_UTR
AGAGCGAGACCAAATTTGGC+AGG 0.535679 tig0016544:-12623 None:intergenic
CAGTGGAACTTGGAATCGAC+AGG 0.536873 tig0016544:-8845 None:intergenic
AAAGCTCCAATTGAGGGGCT+GGG 0.537060 tig0016544:-10895 None:intergenic
CTGTCGATTCCAAGTTCCAC+TGG 0.545124 tig0016544:+8846 Msa1358860:CDS
ATTGTTGCCATTACCCCTGG+TGG 0.548194 tig0016544:+12723 Msa1358860:three_prime_UTR
TTAAACACGCTTTACAAGAG+TGG 0.548418 tig0016544:+9772 Msa1358860:CDS
CATTATGTGGACCGCCCAGA+TGG 0.549135 tig0016544:+12389 Msa1358860:CDS
GGTAAATCTGTTCTCAGAAG+AGG 0.550061 tig0016544:-12447 None:intergenic
TTACAGCCACAGGGTTAAAG+AGG 0.550287 tig0016544:+9728 Msa1358860:CDS
ATTTGTGAAATCTTCTAAAG+CGG 0.550399 tig0016544:+12796 Msa1358860:three_prime_UTR
GGAAGCAAAGATATATCTAT+GGG 0.558456 tig0016544:+10929 Msa1358860:CDS
CAGCAACTGTTAATCCATCT+GGG 0.562264 tig0016544:-12403 None:intergenic
AATTATAGTCCTTGTACAAG+AGG 0.562661 tig0016544:-8806 None:intergenic
GCAGCAGAAAGCTCCAATTG+AGG 0.563516 tig0016544:-10902 None:intergenic
GTTTACCTTATGATATGAGA+GGG 0.563723 tig0016544:-12757 None:intergenic
GGTTTACCTTATGATATGAG+AGG 0.564392 tig0016544:-12758 None:intergenic
TTGCTGCTGAACTCGCTCAC+AGG 0.569987 tig0016544:+12420 Msa1358860:CDS
AAGCATGTTTCTTGGACACC+GGG 0.581324 tig0016544:+13264 Msa1358860:three_prime_UTR
AGTATGAATAAGAGTAGATG+AGG 0.588597 tig0016544:+13116 Msa1358860:three_prime_UTR
AAATCTTCTAAAGCGGCACA+GGG 0.589240 tig0016544:+12803 Msa1358860:three_prime_UTR
AATTTGGCCTCCACGCTCGT+TGG 0.596800 tig0016544:-12550 None:intergenic
AGGGCTTAAAACATCCCACC+AGG 0.602480 tig0016544:-12738 None:intergenic
GAGATTGGCAAAAGAGCAAG+AGG 0.602548 tig0016544:+8187 Msa1358860:CDS
GTGCTGGAGATGGATTCATA+TGG 0.603961 tig0016544:+13138 Msa1358860:three_prime_UTR
TCACCTGACCATGAATCACT+AGG 0.604045 tig0016544:-12932 None:intergenic
CTTGTAGTCTGGAACTGCAA+AGG 0.604582 tig0016544:-13244 None:intergenic
TTGTTGCCATTACCCCTGGT+GGG 0.614104 tig0016544:+12724 Msa1358860:three_prime_UTR
TGATAAAGGACAGTCTCTGA+AGG 0.622839 tig0016544:+12355 Msa1358860:CDS
GAATCGACAGGCTAAACTTG+TGG 0.624169 tig0016544:-8833 None:intergenic
TATTAACTGTGAGGTCCCAA+AGG 0.625879 tig0016544:-12468 None:intergenic
ACCCGATCACAAGTCAGGAA+AGG 0.634719 tig0016544:+10170 Msa1358860:CDS
TTGATCCCTCTTTAACCCTG+TGG 0.639663 tig0016544:-9734 None:intergenic
GGCTTAAAACATCCCACCAG+GGG 0.642117 tig0016544:-12736 None:intergenic
TACAGGGCCTTACAGCCACA+GGG 0.642664 tig0016544:+9719 Msa1358860:intron
CATATCATAAGGTAAACCAA+AGG 0.646778 tig0016544:+12763 Msa1358860:three_prime_UTR
GAGTTTCTCACTGTTTGCGG+CGG 0.647632 tig0016544:-7972 None:intergenic
CTTGAATCAATAGCTGCATG+AGG 0.648302 tig0016544:-10860 None:intergenic
TCCAATGCCAACGAGCGTGG+AGG 0.648958 tig0016544:+12543 Msa1358860:CDS
AGCAGAAAGCTCCAATTGAG+GGG 0.649829 tig0016544:-10900 None:intergenic
TACAGCCACAGGGTTAAAGA+GGG 0.657577 tig0016544:+9729 Msa1358860:CDS
TTTCTGATACAATAGCAAAG+TGG 0.674259 tig0016544:-7925 None:intergenic
AGGTGAATAGTGGAAGTCTG+AGG 0.681497 tig0016544:+12949 Msa1358860:three_prime_UTR
GGTAAGAATTACCAATCCAG+TGG 0.685271 tig0016544:-8862 None:intergenic
GGGCTTAAAACATCCCACCA+GGG 0.701922 tig0016544:-12737 None:intergenic
AATCTTCTAAAGCGGCACAG+GGG 0.785013 tig0016544:+12804 Msa1358860:three_prime_UTR
CAACTGTTAATCCATCTGGG+CGG 0.787246 tig0016544:-12400 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAACTTAATCAAAATATTT+TGG - tig0016544:8527-8546 None:intergenic 10.0%
!!! AATTTTCTAAAATATATTGA+TGG + tig0016544:8749-8768 Msa1358860:intron 10.0%
!! TTTATTTGTTTAAGAAAAAA+AGG - tig0016544:11918-11937 None:intergenic 10.0%
!! AAATTCAAATGTGATATAAT+GGG - tig0016544:8734-8753 None:intergenic 15.0%
!! AAAATTCAAATGTGATATAA+TGG - tig0016544:8735-8754 None:intergenic 15.0%
!! TTATCATATATGTTAAACAT+TGG + tig0016544:9320-9339 Msa1358860:intron 15.0%
!! TTATAAAATCAACTTTATCA+AGG - tig0016544:9481-9500 None:intergenic 15.0%
!!! TTTTTAATGTATTGTAAAAC+AGG + tig0016544:9627-9646 Msa1358860:intron 15.0%
!!! TTTTAATGTATTGTAAAACA+GGG + tig0016544:9628-9647 Msa1358860:intron 15.0%
!! ATAAAAGGAATAATATTTGA+TGG - tig0016544:9862-9881 None:intergenic 15.0%
!! CCTATATTATCATATATAAA+AGG - tig0016544:9877-9896 None:intergenic 15.0%
!!! CCTTTTATATATGATAATAT+AGG + tig0016544:9874-9893 Msa1358860:intron 15.0%
!! AACTTCATAAAAATTAAAAC+TGG + tig0016544:9945-9964 Msa1358860:intron 15.0%
!!! TTTTTAACCAAAAAAAGTAA+AGG + tig0016544:11192-11211 Msa1358860:intron 15.0%
!!! TTTTAACCAAAAAAAGTAAA+GGG + tig0016544:11193-11212 Msa1358860:intron 15.0%
!! TTTAAATAAAAGTGAAAACA+GGG - tig0016544:11273-11292 None:intergenic 15.0%
!!! AAAGATTTTTATACAGAAAA+TGG + tig0016544:11290-11309 Msa1358860:intron 15.0%
!! ATTCTAGACAAATATTTAAA+AGG + tig0016544:11333-11352 Msa1358860:intron 15.0%
!! TTCTAGACAAATATTTAAAA+GGG + tig0016544:11334-11353 Msa1358860:intron 15.0%
!!! ATTACATTAATAATGGTTTT+AGG + tig0016544:11360-11379 Msa1358860:intron 15.0%
!! AGATTTAAATAAGGAAAAAT+AGG - tig0016544:11416-11435 None:intergenic 15.0%
!! AGATTCAATAATATTATTCT+GGG - tig0016544:11442-11461 None:intergenic 15.0%
!! TAGATTCAATAATATTATTC+TGG - tig0016544:11443-11462 None:intergenic 15.0%
!!! CTTTTATTCGATTATTATTT+TGG + tig0016544:11739-11758 Msa1358860:intron 15.0%
!!! GACTTTTTATTATAATCAAA+CGG - tig0016544:11852-11871 None:intergenic 15.0%
!! TTCTTAAACAAATAAATCAA+CGG + tig0016544:11922-11941 Msa1358860:intron 15.0%
!!! AATTTAGATGTTTTATACTA+AGG + tig0016544:13089-13108 Msa1358860:three_prime_UTR 15.0%
!! ATTCATAATATAGGAATGTT+TGG + tig0016544:8078-8097 Msa1358860:intron 20.0%
!!! CATATTTTTATTCAAACCTT+AGG + tig0016544:8224-8243 Msa1358860:intron 20.0%
!! ATATTCATCTTTGAATTTGT+TGG + tig0016544:9517-9536 Msa1358860:intron 20.0%
!!! GGAAAATTGAATTTGAAATA+AGG - tig0016544:9695-9714 None:intergenic 20.0%
!!! AATTCAATTTTCCATTTTAC+AGG + tig0016544:9702-9721 Msa1358860:intron 20.0%
!!! ATTCAATTTTCCATTTTACA+GGG + tig0016544:9703-9722 Msa1358860:intron 20.0%
!! TTTACTAAGTTATTAACTAC+TGG - tig0016544:10001-10020 None:intergenic 20.0%
!! ACATCATTATAATTACAAGA+TGG - tig0016544:10058-10077 None:intergenic 20.0%
!! GAGATAGATAATTAAATGTA+AGG - tig0016544:10304-10323 None:intergenic 20.0%
!!! TTGTTATTTGCATATTATGT+TGG + tig0016544:10446-10465 Msa1358860:intron 20.0%
!! GGTAAAAAATTGTCAAATAT+AGG - tig0016544:10688-10707 None:intergenic 20.0%
!!! TTTGGTTTAAGAAATATAAC+GGG - tig0016544:11107-11126 None:intergenic 20.0%
!!! CTTTGGTTTAAGAAATATAA+CGG - tig0016544:11108-11127 None:intergenic 20.0%
!!! CAGTATCATAATTTGTTATT+TGG + tig0016544:11166-11185 Msa1358860:intron 20.0%
!! CTTTAAATAAAAGTGAAAAC+AGG - tig0016544:11274-11293 None:intergenic 20.0%
!! AGGGTAAATTACATTAATAA+TGG + tig0016544:11353-11372 Msa1358860:intron 20.0%
!! AATAAGGAAAAATAGGTAAT+TGG - tig0016544:11409-11428 None:intergenic 20.0%
!!! ACTTGTACAAACAAATTTTT+TGG - tig0016544:12080-12099 None:intergenic 20.0%
!!! TTTTACAGAAAATAATGCAA+CGG + tig0016544:12140-12159 Msa1358860:intron 20.0%
!! AAGGAAAAGTAAAGAATATA+CGG - tig0016544:12205-12224 None:intergenic 20.0%
!! AAAGTAAGACACTAAAAAAA+AGG - tig0016544:12224-12243 None:intergenic 20.0%
!! AACAATGTAAAATGATAGAA+TGG - tig0016544:12709-12728 None:intergenic 20.0%
!!! TTATGTAAGTTTTCAAAACT+GGG - tig0016544:12836-12855 None:intergenic 20.0%
!!! ATTATGTAAGTTTTCAAAAC+TGG - tig0016544:12837-12856 None:intergenic 20.0%
! ATAAAAGAAAAAAGAAAGCG+TGG - tig0016544:8001-8020 None:intergenic 25.0%
! TATTCAAACCTTAGGTTTAA+AGG + tig0016544:8232-8251 Msa1358860:intron 25.0%
! GATTAAAAAGGTTTCTCTAA+AGG - tig0016544:8653-8672 None:intergenic 25.0%
!!! GTACTAAGTTGTTAGTTTTA+TGG + tig0016544:8771-8790 Msa1358860:intron 25.0%
!! ATTGATAATCGTTGAAAAGT+GGG - tig0016544:8887-8906 None:intergenic 25.0%
!! TATTGATAATCGTTGAAAAG+TGG - tig0016544:8888-8907 None:intergenic 25.0%
! AAGAGAGAAAAATAGACAAA+TGG - tig0016544:9071-9090 None:intergenic 25.0%
! TTAAATGTGTCAATCAATGA+TGG - tig0016544:9161-9180 None:intergenic 25.0%
!!! AATCACTGTTTCTTCTATTT+TGG + tig0016544:9285-9304 Msa1358860:intron 25.0%
!!! ATCACTGTTTCTTCTATTTT+GGG + tig0016544:9286-9305 Msa1358860:intron 25.0%
! AAAATCAACTTTATCAAGGA+AGG - tig0016544:9477-9496 None:intergenic 25.0%
! TTATCGTTTATGTATTCTCA+TGG + tig0016544:9544-9563 Msa1358860:intron 25.0%
! TATCGTTTATGTATTCTCAT+GGG + tig0016544:9545-9564 Msa1358860:intron 25.0%
! GTTTCTTAAGACTGAATTTA+TGG + tig0016544:10236-10255 Msa1358860:intron 25.0%
! CATTTAATTATCTATCTCTG+TGG + tig0016544:10306-10325 Msa1358860:intron 25.0%
!! CTTTATCATCATTGATAGTA+TGG - tig0016544:10366-10385 None:intergenic 25.0%
! TAAGCTCTTTAGTCAATAAA+AGG + tig0016544:10395-10414 Msa1358860:intron 25.0%
! AAGCTCTTTAGTCAATAAAA+GGG + tig0016544:10396-10415 Msa1358860:intron 25.0%
!! ACAATTTTCAGCATAACTTA+AGG - tig0016544:10430-10449 None:intergenic 25.0%
! TTACAGTTATTAATGATTGC+TGG - tig0016544:10596-10615 None:intergenic 25.0%
! CTCAAGTAAAATCATTTCAT+CGG - tig0016544:10621-10640 None:intergenic 25.0%
! TCATTCTCAAAATATAATGC+CGG + tig0016544:10983-11002 Msa1358860:CDS 25.0%
! ATGAATTATGATACTTAACC+AGG - tig0016544:11074-11093 None:intergenic 25.0%
!! TTAAATTTTCTACGAACCTT+GGG + tig0016544:11705-11724 Msa1358860:intron 25.0%
! AAAAGAATTGAAATATCCCA+AGG - tig0016544:11724-11743 None:intergenic 25.0%
! ATCTAAGTCCGATTAAAAAA+GGG + tig0016544:11801-11820 Msa1358860:intron 25.0%
! AACTATCTCCATATATCAAA+GGG - tig0016544:12005-12024 None:intergenic 25.0%
! AAACTATCTCCATATATCAA+AGG - tig0016544:12006-12025 None:intergenic 25.0%
! TATGACTCCAAAAAAATCAT+TGG + tig0016544:12596-12615 Msa1358860:CDS 25.0%
!!! ACAAATTATACTGATTCCTT+TGG - tig0016544:12782-12801 None:intergenic 25.0%
!! ATTTGTGAAATCTTCTAAAG+CGG + tig0016544:12796-12815 Msa1358860:three_prime_UTR 25.0%
! ATAGAATGATAAACCACAAT+TGG - tig0016544:13014-13033 None:intergenic 25.0%
!! TATGTATTATCTTTTTGACG+TGG + tig0016544:13183-13202 Msa1358860:three_prime_UTR 25.0%
TTTCTGATACAATAGCAAAG+TGG - tig0016544:7928-7947 None:intergenic 30.0%
TACATCGCGATTCATAATAT+AGG + tig0016544:8069-8088 Msa1358860:intron 30.0%
!! GGTTTAGTTCTCATTCATTA+TGG + tig0016544:8141-8160 Msa1358860:exon 30.0%
TTCTCATTCATTATGGCTAA+CGG + tig0016544:8148-8167 Msa1358860:exon 30.0%
TATCCTAATGTAACTAACGA+GGG - tig0016544:8360-8379 None:intergenic 30.0%
ATATCCTAATGTAACTAACG+AGG - tig0016544:8361-8380 None:intergenic 30.0%
TCGTTAGTTACATTAGGATA+TGG + tig0016544:8360-8379 Msa1358860:intron 30.0%
GTGACTGCTAATGATTAAAA+AGG - tig0016544:8665-8684 None:intergenic 30.0%
!! TGGTTAAACATCTAGAGTTT+TGG + tig0016544:8688-8707 Msa1358860:intron 30.0%
!! GGTTAAACATCTAGAGTTTT+GGG + tig0016544:8689-8708 Msa1358860:intron 30.0%
AATTATAGTCCTTGTACAAG+AGG - tig0016544:8809-8828 None:intergenic 30.0%
! TTGATAATCGTTGAAAAGTG+GGG - tig0016544:8886-8905 None:intergenic 30.0%
TATGGCATATTCAAGCAAAA+AGG - tig0016544:8945-8964 None:intergenic 30.0%
CACATTAGTGCAATATTTGA+CGG - tig0016544:9432-9451 None:intergenic 30.0%
!! TTCATCTTTGAATTTGTTGG+TGG + tig0016544:9520-9539 Msa1358860:intron 30.0%
ATCGTTTATGTATTCTCATG+GGG + tig0016544:9546-9565 Msa1358860:intron 30.0%
!!! AAGAGGGATCAATTTTTTGT+CGG + tig0016544:9745-9764 Msa1358860:CDS 30.0%
TATTAAGAGAAGTAGCACTA+CGG - tig0016544:9905-9924 None:intergenic 30.0%
! AAAACTGGTTCAGTTATGTA+TGG + tig0016544:9960-9979 Msa1358860:intron 30.0%
TTTATGTGATTTACTTCCTC+AGG + tig0016544:10077-10096 Msa1358860:intron 30.0%
!!! CAACGCTACTTTTTTACTAT+GGG - tig0016544:10139-10158 None:intergenic 30.0%
!!! TCAACGCTACTTTTTTACTA+TGG - tig0016544:10140-10159 None:intergenic 30.0%
! GATAGTATGGATTAAATTCC+AGG - tig0016544:10353-10372 None:intergenic 30.0%
! ATATGAATTTTGTGTGTGTG+TGG + tig0016544:10534-10553 Msa1358860:intron 30.0%
! TATGAATTTTGTGTGTGTGT+GGG + tig0016544:10535-10554 Msa1358860:intron 30.0%
CATATGCACTGTATTTACTT+TGG + tig0016544:10777-10796 Msa1358860:intron 30.0%
TGGAAGCAAAGATATATCTA+TGG + tig0016544:10928-10947 Msa1358860:CDS 30.0%
GGAAGCAAAGATATATCTAT+GGG + tig0016544:10929-10948 Msa1358860:CDS 30.0%
!! ATATTTTGAGAATGAAGCAG+AGG - tig0016544:10978-10997 None:intergenic 30.0%
CATTCTCAAAATATAATGCC+GGG + tig0016544:10984-11003 Msa1358860:CDS 30.0%
! AGAGAAATCTGGTTTATTGA+AGG - tig0016544:11014-11033 None:intergenic 30.0%
! TGTTGTTAGTACTATTTTCC+TGG + tig0016544:11053-11072 Msa1358860:intron 30.0%
GTTTATTGAAGGCAATGATA+TGG - tig0016544:11134-11153 None:intergenic 30.0%
ATACCATGTTTCTTAAACCA+AGG - tig0016544:11222-11241 None:intergenic 30.0%
TTGGTTTAAGAAACATGGTA+TGG + tig0016544:11221-11240 Msa1358860:intron 30.0%
TGGTTTCACTAATCATTATG+TGG + tig0016544:11241-11260 Msa1358860:intron 30.0%
GGTTTCACTAATCATTATGT+GGG + tig0016544:11242-11261 Msa1358860:intron 30.0%
TCTGGGCAAAGATTTAAATA+AGG - tig0016544:11425-11444 None:intergenic 30.0%
TGTTCACTACTATCAACAAT+TGG - tig0016544:11473-11492 None:intergenic 30.0%
TAACAGTGTAGAGAATTGTA+TGG + tig0016544:11676-11695 Msa1358860:intron 30.0%
! GTTAAATTTTCTACGAACCT+TGG + tig0016544:11704-11723 Msa1358860:intron 30.0%
!!! TCGATTATTATTTTGGAGAG+AGG + tig0016544:11746-11765 Msa1358860:intron 30.0%
CATCTAAGTCCGATTAAAAA+AGG + tig0016544:11800-11819 Msa1358860:intron 30.0%
!!! TTGGTGAACCCTTTTTTAAT+CGG - tig0016544:11812-11831 None:intergenic 30.0%
AATCAAACGGTTATCAATGA+GGG - tig0016544:11839-11858 None:intergenic 30.0%
TAATCAAACGGTTATCAATG+AGG - tig0016544:11840-11859 None:intergenic 30.0%
TAAATCAACGGTTAGTGAAA+AGG + tig0016544:11934-11953 Msa1358860:intron 30.0%
ACTATCTCCATATATCAAAG+GGG - tig0016544:12004-12023 None:intergenic 30.0%
! GTGAAAGTTGTCTTTTCTTT+CGG + tig0016544:12256-12275 Msa1358860:intron 30.0%
GCAAATGTGTTTACTTACTT+TGG + tig0016544:12294-12313 Msa1358860:intron 30.0%
ATGTGTTTACTTACTTTGGT+AGG + tig0016544:12298-12317 Msa1358860:intron 30.0%
TGTGTTTACTTACTTTGGTA+GGG + tig0016544:12299-12318 Msa1358860:intron 30.0%
! TTTTGGATCTATTAACTGTG+AGG - tig0016544:12480-12499 None:intergenic 30.0%
!!! GATTTTTTTGGAGTCATACT+CGG - tig0016544:12594-12613 None:intergenic 30.0%
!!! AGGTGAACCAATGATTTTTT+TGG - tig0016544:12606-12625 None:intergenic 30.0%
GTCGTTGAATAAGATTTGAT+AGG - tig0016544:12674-12693 None:intergenic 30.0%
GTTTACCTTATGATATGAGA+GGG - tig0016544:12760-12779 None:intergenic 30.0%
CATATCATAAGGTAAACCAA+AGG + tig0016544:12763-12782 Msa1358860:three_prime_UTR 30.0%
AGAATGGCAGTACAATAAAT+CGG - tig0016544:12877-12896 None:intergenic 30.0%
!!! GTTTTTTTCCTAGTGATTCA+TGG + tig0016544:12924-12943 Msa1358860:three_prime_UTR 30.0%
AGTATGAATAAGAGTAGATG+AGG + tig0016544:13116-13135 Msa1358860:three_prime_UTR 30.0%
! TTTTTGACGTGGTTACATAT+TGG + tig0016544:13194-13213 Msa1358860:three_prime_UTR 30.0%
!!! CATTTTTTTATGGAGCTGCT+GGG - tig0016544:7895-7914 None:intergenic 35.0%
!!! CCAGCTACTGCATTTTTTTA+TGG - tig0016544:7905-7924 None:intergenic 35.0%
CCATAAAAAAATGCAGTAGC+TGG + tig0016544:7902-7921 Msa1358860:five_prime_UTR 35.0%
! AAGAAAAAAGAAAGCGTGGA+CGG - tig0016544:7997-8016 None:intergenic 35.0%
! CACAGTCAGTTGTCAATTTT+CGG - tig0016544:8106-8125 None:intergenic 35.0%
! CTTTTGCCAATCTCAGAAAA+CGG - tig0016544:8181-8200 None:intergenic 35.0%
!! AAAAGAGCAAGAGGTATTAC+AGG + tig0016544:8196-8215 Msa1358860:intron 35.0%
GAATCAGTCCTTTAAACCTA+AGG - tig0016544:8243-8262 None:intergenic 35.0%
TTCTATAACACGAGATAAGC+TGG - tig0016544:8265-8284 None:intergenic 35.0%
AACTAACGAGGGATCTATTT+AGG - tig0016544:8349-8368 None:intergenic 35.0%
AGTGTTGTCAAATATCAGCA+TGG + tig0016544:8385-8404 Msa1358860:intron 35.0%
TGTGATGTATACTTGAGTGA+GGG - tig0016544:8483-8502 None:intergenic 35.0%
ATGTGATGTATACTTGAGTG+AGG - tig0016544:8484-8503 None:intergenic 35.0%
GAGAAATTCTGCAATGTTGT+AGG - tig0016544:8564-8583 None:intergenic 35.0%
CTGAGAGAATGAGTATGAAA+AGG + tig0016544:8621-8640 Msa1358860:intron 35.0%
AACTCTAGATGTTTAACCAC+AGG - tig0016544:8687-8706 None:intergenic 35.0%
TACAATTCCATATGGTAGGA+GGG - tig0016544:9409-9428 None:intergenic 35.0%
TTTGACGGTACAATTCCATA+TGG - tig0016544:9417-9436 None:intergenic 35.0%
CGTCAAATATTGCACTAATG+TGG + tig0016544:9430-9449 Msa1358860:intron 35.0%
TTTATGTATTCTCATGGGGA+TGG + tig0016544:9550-9569 Msa1358860:intron 35.0%
TTATGTATTCTCATGGGGAT+GGG + tig0016544:9551-9570 Msa1358860:intron 35.0%
AGGATGCATATTTGTGCAAT+GGG + tig0016544:9582-9601 Msa1358860:intron 35.0%
TTAAACACGCTTTACAAGAG+TGG + tig0016544:9772-9791 Msa1358860:CDS 35.0%
ATTAAGAGAAGTAGCACTAC+GGG - tig0016544:9904-9923 None:intergenic 35.0%
!! CAACATTATGGGTTTTGGTA+GGG - tig0016544:10709-10728 None:intergenic 35.0%
! TGCAAAGGATCCTTTTCATA+TGG + tig0016544:10745-10764 Msa1358860:intron 35.0%
GTCTTGCTAACCATATGAAA+AGG - tig0016544:10758-10777 None:intergenic 35.0%
CTGTGGAATATTATGTCAGT+TGG + tig0016544:10820-10839 Msa1358860:intron 35.0%
!! GCAGCTATTGATTCAAGTAT+TGG + tig0016544:10866-10885 Msa1358860:CDS 35.0%
! ATAAGTGTTGCAGAGAAATC+TGG - tig0016544:11025-11044 None:intergenic 35.0%
AGGCAATGATATGGTTTCTT+TGG - tig0016544:11125-11144 None:intergenic 35.0%
GCCTTCAATAAACCATATCA+CGG + tig0016544:11141-11160 Msa1358860:intron 35.0%
ACCGTGATATGGTTTATTGA+AGG - tig0016544:11145-11164 None:intergenic 35.0%
TATGATACTGAACCGTGATA+TGG - tig0016544:11156-11175 None:intergenic 35.0%
!!! AGGAAGCCCTTTACTTTTTT+TGG - tig0016544:11202-11221 None:intergenic 35.0%
AAAAAAGTAAAGGGCTTCCT+TGG + tig0016544:11202-11221 Msa1358860:intron 35.0%
CTTCCTTGGTTTAAGAAACA+TGG + tig0016544:11216-11235 Msa1358860:intron 35.0%
!! CTGGACTTAAGGGTATTAAT+AGG + tig0016544:11547-11566 Msa1358860:intron 35.0%
AAGCCAGAAGATATATGTGT+GGG - tig0016544:11631-11650 None:intergenic 35.0%
AAAGCCAGAAGATATATGTG+TGG - tig0016544:11632-11651 None:intergenic 35.0%
GGTTATCAATGAGGGAATAT+TGG - tig0016544:11831-11850 None:intergenic 35.0%
AAGGCATATTGCGTTGAAAA+TGG - tig0016544:11973-11992 None:intergenic 35.0%
TACAGAAAATAATGCAACGG+AGG + tig0016544:12143-12162 Msa1358860:intron 35.0%
TCCATGTGCGTATATATTGA+TGG + tig0016544:12178-12197 Msa1358860:intron 35.0%
TCCATCAATATATACGCACA+TGG - tig0016544:12182-12201 None:intergenic 35.0%
! TCTTTTCTTTCGGAAGTTGT+AGG + tig0016544:12266-12285 Msa1358860:intron 35.0%
TTTGGTAGGGTAACAAAACA+TGG + tig0016544:12312-12331 Msa1358860:intron 35.0%
GGCATCTTACATTCATTATG+TGG + tig0016544:12376-12395 Msa1358860:CDS 35.0%
TCTGAGAACAGATTTACCTT+TGG + tig0016544:12452-12471 Msa1358860:CDS 35.0%
CTGAGAACAGATTTACCTTT+GGG + tig0016544:12453-12472 Msa1358860:CDS 35.0%
! CGAGTCTTCAAAACTGTTTT+TGG - tig0016544:12497-12516 None:intergenic 35.0%
GATAGGGTTATGAGTGAATT+TGG - tig0016544:12569-12588 None:intergenic 35.0%
TTGATAGGCAAACCAGTTTA+AGG - tig0016544:12659-12678 None:intergenic 35.0%
TTAAGCCCTCTCATATCATA+AGG + tig0016544:12752-12771 Msa1358860:three_prime_UTR 35.0%
GGTTTACCTTATGATATGAG+AGG - tig0016544:12761-12780 None:intergenic 35.0%
TTGTACTGCCATTCTATATC+TGG + tig0016544:12882-12901 Msa1358860:three_prime_UTR 35.0%
AACTCATGCCAGATATAGAA+TGG - tig0016544:12893-12912 None:intergenic 35.0%
TCTATATCTGGCATGAGTTA+TGG + tig0016544:12894-12913 Msa1358860:three_prime_UTR 35.0%
CTATATCTGGCATGAGTTAT+GGG + tig0016544:12895-12914 Msa1358860:three_prime_UTR 35.0%
CTTCTCATATGAACCAATTG+TGG + tig0016544:12998-13017 Msa1358860:three_prime_UTR 35.0%
!! TTCTGTAGATGAAGTGTTGA+AGG - tig0016544:13038-13057 None:intergenic 35.0%
!!! GCATTTTTTTATGGAGCTGC+TGG - tig0016544:7896-7915 None:intergenic 40.0%
CGAAAATTGACAACTGACTG+TGG + tig0016544:8104-8123 Msa1358860:intron 40.0%
!! ACTGTGGTTTTGCATTTGCA+GGG + tig0016544:8120-8139 Msa1358860:intron 40.0%
GGATCTATTTAGGCTCTGTT+TGG - tig0016544:8339-8358 None:intergenic 40.0%
GATCCCTCGTTAGTTACATT+AGG + tig0016544:8354-8373 Msa1358860:intron 40.0%
GTGATGTATACTTGAGTGAG+GGG - tig0016544:8482-8501 None:intergenic 40.0%
TCACTGATGTATTAATCGCC+AGG + tig0016544:8595-8614 Msa1358860:intron 40.0%
CACTGATGTATTAATCGCCA+GGG + tig0016544:8596-8615 Msa1358860:intron 40.0%
TAATCATTAGCAGTCACCTG+TGG + tig0016544:8668-8687 Msa1358860:intron 40.0%
!!! ACATCTAGAGTTTTGGGTGT+CGG + tig0016544:8695-8714 Msa1358860:intron 40.0%
ATTACCAATCCAGTGGAACT+TGG - tig0016544:8858-8877 None:intergenic 40.0%
GGTAAGAATTACCAATCCAG+TGG - tig0016544:8865-8884 None:intergenic 40.0%
TATATGTGCGACTGTGTGAT+TGG - tig0016544:8971-8990 None:intergenic 40.0%
ACAATTCCATATGGTAGGAG+GGG - tig0016544:9408-9427 None:intergenic 40.0%
GTACAATTCCATATGGTAGG+AGG - tig0016544:9410-9429 None:intergenic 40.0%
ACGGTACAATTCCATATGGT+AGG - tig0016544:9413-9432 None:intergenic 40.0%
TTGCACTAATGTGGAGAGAA+CGG + tig0016544:9439-9458 Msa1358860:intron 40.0%
GAGGATGCATATTTGTGCAA+TGG + tig0016544:9581-9600 Msa1358860:intron 40.0%
TGTGCAATGGGAAACTTGTA+TGG + tig0016544:9594-9613 Msa1358860:intron 40.0%
!!! GTCACTTTTGTAGATACCTG+AGG - tig0016544:10096-10115 None:intergenic 40.0%
AATATACCCGATCACAAGTC+AGG + tig0016544:10165-10184 Msa1358860:CDS 40.0%
TGCAGTGTTTGTATTTGCTC+TGG + tig0016544:10260-10279 Msa1358860:intron 40.0%
!! CCAACATTATGGGTTTTGGT+AGG - tig0016544:10710-10729 None:intergenic 40.0%
CCTACCAAAACCCATAATGT+TGG + tig0016544:10707-10726 Msa1358860:intron 40.0%
! CTCACCAACATTATGGGTTT+TGG - tig0016544:10714-10733 None:intergenic 40.0%
CAAAACCCATAATGTTGGTG+AGG + tig0016544:10712-10731 Msa1358860:intron 40.0%
CTGAACCTCACCAACATTAT+GGG - tig0016544:10720-10739 None:intergenic 40.0%
CTTGAATCAATAGCTGCATG+AGG - tig0016544:10863-10882 None:intergenic 40.0%
!! ATATCTATGGGTGCTGAAGT+TGG + tig0016544:10941-10960 Msa1358860:CDS 40.0%
TGGTTTATTGAAGGCAATCC+CGG - tig0016544:11005-11024 None:intergenic 40.0%
AGACCCACACATATATCTTC+TGG + tig0016544:11625-11644 Msa1358860:intron 40.0%
TTACGACTGATGAAGAGATG+TGG - tig0016544:12039-12058 None:intergenic 40.0%
ATAATGCAACGGAGGTTTAG+AGG + tig0016544:12151-12170 Msa1358860:intron 40.0%
TAATGCAACGGAGGTTTAGA+GGG + tig0016544:12152-12171 Msa1358860:intron 40.0%
ATGGACTCACTGTTTATGCA+GGG + tig0016544:12331-12350 Msa1358860:intron 40.0%
TGTTTATGCAGGGCTGATAA+AGG + tig0016544:12341-12360 Msa1358860:intron 40.0%
TGATAAAGGACAGTCTCTGA+AGG + tig0016544:12355-12374 Msa1358860:CDS 40.0%
CAGCAACTGTTAATCCATCT+GGG - tig0016544:12406-12425 None:intergenic 40.0%
GGTAAATCTGTTCTCAGAAG+AGG - tig0016544:12450-12469 None:intergenic 40.0%
TATTAACTGTGAGGTCCCAA+AGG - tig0016544:12471-12490 None:intergenic 40.0%
! ATTGGTTCACCTGCCAAATT+TGG + tig0016544:12614-12633 Msa1358860:CDS 40.0%
!! AAATCTTCTAAAGCGGCACA+GGG + tig0016544:12803-12822 Msa1358860:three_prime_UTR 40.0%
TTTCCTAGTGATTCATGGTC+AGG + tig0016544:12929-12948 Msa1358860:three_prime_UTR 40.0%
ATTCATGGTCAGGTGAATAG+TGG + tig0016544:12939-12958 Msa1358860:three_prime_UTR 40.0%
AATAAGAGTAGATGAGGTGC+TGG + tig0016544:13122-13141 Msa1358860:three_prime_UTR 40.0%
CAAGAAACATGCTTGTAGTC+TGG - tig0016544:13258-13277 None:intergenic 40.0%
CAGACTACAAGCATGTTTCT+TGG + tig0016544:13256-13275 Msa1358860:three_prime_UTR 40.0%
TGTATCAGAAACGAGTAGCC+AGG + tig0016544:7937-7956 Msa1358860:five_prime_UTR 45.0%
ACGGAGTTTCTCACTGTTTG+CGG - tig0016544:7978-7997 None:intergenic 45.0%
!! GACTGTGGTTTTGCATTTGC+AGG + tig0016544:8119-8138 Msa1358860:intron 45.0%
GAGATTGGCAAAAGAGCAAG+AGG + tig0016544:8187-8206 Msa1358860:CDS 45.0%
GAATCGACAGGCTAAACTTG+TGG - tig0016544:8836-8855 None:intergenic 45.0%
GATTCCAAGTTCCACTGGAT+TGG + tig0016544:8851-8870 Msa1358860:CDS 45.0%
CGACTGTGTGATTGGAACTA+TGG - tig0016544:8963-8982 None:intergenic 45.0%
CAATTCCATATGGTAGGAGG+GGG - tig0016544:9407-9426 None:intergenic 45.0%
TCTTTAACCCTGTGGCTGTA+AGG - tig0016544:9729-9748 None:intergenic 45.0%
TTACAGCCACAGGGTTAAAG+AGG + tig0016544:9728-9747 Msa1358860:CDS 45.0%
TACAGCCACAGGGTTAAAGA+GGG + tig0016544:9729-9748 Msa1358860:CDS 45.0%
TTGATCCCTCTTTAACCCTG+TGG - tig0016544:9737-9756 None:intergenic 45.0%
! ACCTTTCCTGACTTGTGATC+GGG - tig0016544:10174-10193 None:intergenic 45.0%
! CACCTTTCCTGACTTGTGAT+CGG - tig0016544:10175-10194 None:intergenic 45.0%
! TTTTGTGTGTGTGTGGGATG+TGG + tig0016544:10541-10560 Msa1358860:intron 45.0%
! TGGTAGACGGATTCTCTTTG+TGG + tig0016544:10561-10580 Msa1358860:intron 45.0%
TGAAACTGCCATTCCAGTCA+TGG + tig0016544:10652-10671 Msa1358860:intron 45.0%
GCTGAACCTCACCAACATTA+TGG - tig0016544:10721-10740 None:intergenic 45.0%
TGAGGTTCAGCTTCATGCAA+AGG + tig0016544:10730-10749 Msa1358860:intron 45.0%
AGCAGAAAGCTCCAATTGAG+GGG - tig0016544:10903-10922 None:intergenic 45.0%
CAGCAGAAAGCTCCAATTGA+GGG - tig0016544:10904-10923 None:intergenic 45.0%
TTGGAGCTTTCTGCTGCAAT+TGG + tig0016544:10908-10927 Msa1358860:CDS 45.0%
CTGAACTAATTGCATCGCAC+TGG + tig0016544:11528-11547 Msa1358860:intron 45.0%
ATTGCATCGCACTGGACTTA+AGG + tig0016544:11536-11555 Msa1358860:intron 45.0%
TTGCATCGCACTGGACTTAA+GGG + tig0016544:11537-11556 Msa1358860:intron 45.0%
ACACGATGAACACCTCTGAA+TGG + tig0016544:11774-11793 Msa1358860:intron 45.0%
ACTTAGATGCTGCCATTCAG+AGG - tig0016544:11789-11808 None:intergenic 45.0%
TATCAAAGGGGTCTGGTCTA+AGG - tig0016544:11992-12011 None:intergenic 45.0%
GACCAGACCCCTTTGATATA+TGG + tig0016544:11994-12013 Msa1358860:intron 45.0%
CTCCATATATCAAAGGGGTC+TGG - tig0016544:11999-12018 None:intergenic 45.0%
CATGGACTCACTGTTTATGC+AGG + tig0016544:12330-12349 Msa1358860:intron 45.0%
CAACTGTTAATCCATCTGGG+CGG - tig0016544:12403-12422 None:intergenic 45.0%
GCAGCAACTGTTAATCCATC+TGG - tig0016544:12407-12426 None:intergenic 45.0%
AAGACTCGATTCAGCGATGA+TGG + tig0016544:12509-12528 Msa1358860:CDS 45.0%
AGAGAGAGCGAGACCAAATT+TGG - tig0016544:12630-12649 None:intergenic 45.0%
CTCTCTCTCAAGCCTTAAAC+TGG + tig0016544:12644-12663 Msa1358860:exon 45.0%
TACATTGTTGCCATTACCCC+TGG + tig0016544:12720-12739 Msa1358860:three_prime_UTR 45.0%
!! GAAATCTTCTAAAGCGGCAC+AGG + tig0016544:12802-12821 Msa1358860:three_prime_UTR 45.0%
!! AATCTTCTAAAGCGGCACAG+GGG + tig0016544:12804-12823 Msa1358860:three_prime_UTR 45.0%
TCACCTGACCATGAATCACT+AGG - tig0016544:12935-12954 None:intergenic 45.0%
! AGGTGAATAGTGGAAGTCTG+AGG + tig0016544:12949-12968 Msa1358860:three_prime_UTR 45.0%
! GTGCTGGAGATGGATTCATA+TGG + tig0016544:13138-13157 Msa1358860:three_prime_UTR 45.0%
! CTTGTAGTCTGGAACTGCAA+AGG - tig0016544:13247-13266 None:intergenic 45.0%
CAAGCATGTTTCTTGGACAC+CGG + tig0016544:13263-13282 Msa1358860:three_prime_UTR 45.0%
AAGCATGTTTCTTGGACACC+GGG + tig0016544:13264-13283 Msa1358860:three_prime_UTR 45.0%
GAGTTTCTCACTGTTTGCGG+CGG - tig0016544:7975-7994 None:intergenic 50.0%
CCAATCTCAGAAAACGGTGC+TGG - tig0016544:8175-8194 None:intergenic 50.0%
!!! CCAGCACCGTTTTCTGAGAT+TGG + tig0016544:8172-8191 Msa1358860:CDS 50.0%
ATCAGCATGGCAGATTGCAG+TGG + tig0016544:8398-8417 Msa1358860:intron 50.0%
TGGCAGATTGCAGTGGTTGA+TGG + tig0016544:8405-8424 Msa1358860:intron 50.0%
TACTCATTCTCTCAGAGCCC+TGG - tig0016544:8616-8635 None:intergenic 50.0%
TCCTTGTACAAGAGGTCTGC+AGG - tig0016544:8801-8820 None:intergenic 50.0%
CAGTGGAACTTGGAATCGAC+AGG - tig0016544:8848-8867 None:intergenic 50.0%
!! CTGTCGATTCCAAGTTCCAC+TGG + tig0016544:8846-8865 Msa1358860:CDS 50.0%
GGCTGTAAGGCCCTGTAAAA+TGG - tig0016544:9716-9735 None:intergenic 50.0%
ACCCGATCACAAGTCAGGAA+AGG + tig0016544:10170-10189 Msa1358860:CDS 50.0%
TCATGAATGCACTGCTCTCC+TGG + tig0016544:10332-10351 Msa1358860:intron 50.0%
TGTGTGTGGGATGTGGTAGA+CGG + tig0016544:10548-10567 Msa1358860:intron 50.0%
TCTTACGACGCATCTCACTG+TGG + tig0016544:10803-10822 Msa1358860:intron 50.0%
AAAGCTCCAATTGAGGGGCT+GGG - tig0016544:10898-10917 None:intergenic 50.0%
GCAGCAGAAAGCTCCAATTG+AGG - tig0016544:10905-10924 None:intergenic 50.0%
! GGGTCTTCGTTGATGAACTG+TGG - tig0016544:11611-11630 None:intergenic 50.0%
GGAGTCATACTCGGCAGATA+GGG - tig0016544:12585-12604 None:intergenic 50.0%
TGGAGTCATACTCGGCAGAT+AGG - tig0016544:12586-12605 None:intergenic 50.0%
AGAGCGAGACCAAATTTGGC+AGG - tig0016544:12626-12645 None:intergenic 50.0%
ATTGTTGCCATTACCCCTGG+TGG + tig0016544:12723-12742 Msa1358860:three_prime_UTR 50.0%
TTGTTGCCATTACCCCTGGT+GGG + tig0016544:12724-12743 Msa1358860:three_prime_UTR 50.0%
AAACATCCCACCAGGGGTAA+TGG - tig0016544:12733-12752 None:intergenic 50.0%
GGCTTAAAACATCCCACCAG+GGG - tig0016544:12739-12758 None:intergenic 50.0%
GGGCTTAAAACATCCCACCA+GGG - tig0016544:12740-12759 None:intergenic 50.0%
AGGGCTTAAAACATCCCACC+AGG - tig0016544:12741-12760 None:intergenic 50.0%
!! AGTAGATGAGGTGCTGGAGA+TGG + tig0016544:13128-13147 Msa1358860:three_prime_UTR 50.0%
GCCTGCAGACCTCTTGTACA+AGG + tig0016544:8797-8816 Msa1358860:intron 55.0%
ATGGTAGGAGGGGGTAGGAT+TGG - tig0016544:9398-9417 None:intergenic 55.0%
TCCTACCCCCTCCTACCATA+TGG + tig0016544:9399-9418 Msa1358860:intron 55.0%
TCCATATGGTAGGAGGGGGT+AGG - tig0016544:9403-9422 None:intergenic 55.0%
CATGGGGATGGGTGCTAAAG+AGG + tig0016544:9562-9581 Msa1358860:intron 55.0%
TTACAGGGCCTTACAGCCAC+AGG + tig0016544:9718-9737 Msa1358860:intron 55.0%
TACAGGGCCTTACAGCCACA+GGG + tig0016544:9719-9738 Msa1358860:intron 55.0%
GCCATTCCAGTCATGGAGTG+TGG + tig0016544:10659-10678 Msa1358860:intron 55.0%
GCCACACTCCATGACTGGAA+TGG - tig0016544:10663-10682 None:intergenic 55.0%
AGGAAGCCACACTCCATGAC+TGG - tig0016544:10668-10687 None:intergenic 55.0%
CTTGAACCCAGCCCCTCAAT+TGG + tig0016544:10889-10908 Msa1358860:CDS 55.0%
GAAAGCTCCAATTGAGGGGC+TGG - tig0016544:10899-10918 None:intergenic 55.0%
CATTATGTGGACCGCCCAGA+TGG + tig0016544:12389-12408 Msa1358860:CDS 55.0%
TTGCTGCTGAACTCGCTCAC+AGG + tig0016544:12420-12439 Msa1358860:CDS 55.0%
AATTTGGCCTCCACGCTCGT+TGG - tig0016544:12553-12572 None:intergenic 55.0%
TGCTGCGACGCAAATCGAGC+TGG - tig0016544:8046-8065 None:intergenic 60.0%
! CCACGCTCGTTGGCATTGGA+AGG - tig0016544:12543-12562 None:intergenic 60.0%
CCTTCCAATGCCAACGAGCG+TGG + tig0016544:12540-12559 Msa1358860:CDS 60.0%
TCCAATGCCAACGAGCGTGG+AGG + tig0016544:12543-12562 Msa1358860:CDS 60.0%
GCCTCCACGCTCGTTGGCAT+TGG - tig0016544:12547-12566 None:intergenic 65.0%
CGGCGGCGACGACGAAGTCC+TGG - tig0016544:7958-7977 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0016544 gene 7874 13296 7874 ID=Msa1358860;Name=Msa1358860
tig0016544 mRNA 7874 13296 7874 ID=Msa1358860-mRNA-1;Parent=Msa1358860;Name=Msa1358860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=129|1|1|1|0.83|0.71|7|635|279
tig0016544 exon 7874 7983 7874 ID=Msa1358860-mRNA-1:exon:11085;Parent=Msa1358860-mRNA-1
tig0016544 exon 8141 8208 8141 ID=Msa1358860-mRNA-1:exon:11086;Parent=Msa1358860-mRNA-1
tig0016544 exon 8805 8872 8805 ID=Msa1358860-mRNA-1:exon:11087;Parent=Msa1358860-mRNA-1
tig0016544 exon 9724 9834 9724 ID=Msa1358860-mRNA-1:exon:11088;Parent=Msa1358860-mRNA-1
tig0016544 exon 10099 10191 10099 ID=Msa1358860-mRNA-1:exon:11089;Parent=Msa1358860-mRNA-1
tig0016544 exon 10839 11047 10839 ID=Msa1358860-mRNA-1:exon:11090;Parent=Msa1358860-mRNA-1
tig0016544 exon 12352 13296 12352 ID=Msa1358860-mRNA-1:exon:11091;Parent=Msa1358860-mRNA-1
tig0016544 five_prime_UTR 7874 7983 7874 ID=Msa1358860-mRNA-1:five_prime_utr;Parent=Msa1358860-mRNA-1
tig0016544 five_prime_UTR 8141 8159 8141 ID=Msa1358860-mRNA-1:five_prime_utr;Parent=Msa1358860-mRNA-1
tig0016544 CDS 8160 8208 8160 ID=Msa1358860-mRNA-1:cds;Parent=Msa1358860-mRNA-1
tig0016544 CDS 8805 8872 8805 ID=Msa1358860-mRNA-1:cds;Parent=Msa1358860-mRNA-1
tig0016544 CDS 9724 9834 9724 ID=Msa1358860-mRNA-1:cds;Parent=Msa1358860-mRNA-1
tig0016544 CDS 10099 10191 10099 ID=Msa1358860-mRNA-1:cds;Parent=Msa1358860-mRNA-1
tig0016544 CDS 10839 11047 10839 ID=Msa1358860-mRNA-1:cds;Parent=Msa1358860-mRNA-1
tig0016544 CDS 12352 12661 12352 ID=Msa1358860-mRNA-1:cds;Parent=Msa1358860-mRNA-1
tig0016544 three_prime_UTR 12662 13296 12662 ID=Msa1358860-mRNA-1:three_prime_utr;Parent=Msa1358860-mRNA-1
Gene Sequence

>Msa1358860

ATGGCTAACGGTCCAGCACCGTTTTCTGAGATTGGCAAAAGAGCAAGAGACCTCTTGTACAAGGACTATAATTTCGACCACAAGTTTAGCCTGTCGATTCCAAGTTCCACTGGATTGGGCCTTACAGCCACAGGGTTAAAGAGGGATCAATTTTTTGTCGGTGACTTAAACACGCTTTACAAGAGTGGAAATGTTACAGTCGATGTGAAAGTCAATACAGACTCTAATGTATCTACAAAAGTGACTTTGAATGATGTTTCTCTTTCCCATAGTAAAAAAGTAGCGTTGAGCTTCAATATACCCGATCACAAGTCAGGAAAGTTGGATGTGCAGTATCTTCATCCTCATGCAGCTATTGATTCAAGTATTGGCTTGAACCCAGCCCCTCAATTGGAGCTTTCTGCTGCAATTGGAAGCAAAGATATATCTATGGGTGCTGAAGTTGGATTCGATACAACCTCTGCTTCATTCTCAAAATATAATGCCGGGATTGCCTTCAATAAACCAGATTTCTCTGCAACACTTATGCTGGCTGATAAAGGACAGTCTCTGAAGGCATCTTACATTCATTATGTGGACCGCCCAGATGGATTAACAGTTGCTGCTGAACTCGCTCACAGGTTGTCCTCTTCTGAGAACAGATTTACCTTTGGGACCTCACAGTTAATAGATCCAAAAACAGTTTTGAAGACTCGATTCAGCGATGATGGCAAAGCTGCCTTCCAATGCCAACGAGCGTGGAGGCCAAATTCACTCATAACCCTATCTGCCGAGTATGACTCCAAAAAAATCATTGGTTCACCTGCCAAATTTGGTCTCGCTCTCTCTCTCAAGCCTTAA
Protein sequence

>Msa1358860

MANGPAPFSEIGKRARDLLYKDYNFDHKFSLSIPSSTGLGLTATGLKRDQFFVGDLNTLYKSGNVTVDVKVNTDSNVSTKVTLNDVSLSHSKKVALSFNIPDHKSGKLDVQYLHPHAAIDSSIGLNPAPQLELSAAIGSKDISMGAEVGFDTTSASFSKYNAGIAFNKPDFSATLMLADKGQSLKASYIHYVDRPDGLTVAAELAHRLSSSENRFTFGTSQLIDPKTVLKTRFSDDGKAAFQCQRAWRPNSLITLSAEYDSKKIIGSPAKFGLALSLKP*