Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360360 | XP_003589266.1 | 98.490 | 596 | 9 | 0 | 1 | 596 | 1 | 596 | 0.0 | 1228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360360 | sp|Q8S2E6|Y1235_ORYSJ | 26.913 | 379 | 222 | 11 | 12 | 350 | 17 | 380 | 4.96e-28 | 119 |
| Msa1360360 | sp|Q8S2E6|Y1235_ORYSJ | 37.607 | 117 | 66 | 2 | 463 | 576 | 265 | 377 | 4.82e-15 | 80.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360360 | G7I4K0 | 98.490 | 596 | 9 | 0 | 1 | 596 | 1 | 596 | 0.0 | 1228 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1360360 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101750 | Msa1360360 | 0.905346 | 4.732808e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360360 | MtrunA17_Chr1g0154041 | 98.490 | 596 | 9 | 0 | 1 | 596 | 1 | 596 | 0.0 | 1228 |
| Msa1360360 | MtrunA17_Chr1g0154101 | 77.720 | 386 | 80 | 2 | 209 | 593 | 460 | 840 | 0.0 | 602 |
| Msa1360360 | MtrunA17_Chr1g0154101 | 33.434 | 332 | 173 | 8 | 47 | 362 | 539 | 838 | 7.26e-41 | 159 |
| Msa1360360 | MtrunA17_Chr1g0154101 | 40.196 | 102 | 59 | 2 | 15 | 115 | 183 | 283 | 1.28e-16 | 84.0 |
| Msa1360360 | MtrunA17_Chr1g0154101 | 35.156 | 128 | 71 | 4 | 15 | 130 | 24 | 151 | 4.41e-15 | 79.0 |
| Msa1360360 | MtrunA17_Chr1g0154071 | 48.817 | 338 | 147 | 8 | 29 | 355 | 169 | 491 | 4.05e-87 | 279 |
| Msa1360360 | MtrunA17_Chr1g0154071 | 47.619 | 147 | 76 | 1 | 439 | 584 | 345 | 491 | 1.09e-34 | 137 |
| Msa1360360 | MtrunA17_Chr1g0154071 | 32.353 | 102 | 68 | 1 | 15 | 115 | 27 | 128 | 8.31e-11 | 64.7 |
| Msa1360360 | MtrunA17_Chr1g0154211 | 42.091 | 373 | 183 | 8 | 15 | 361 | 22 | 387 | 1.90e-83 | 266 |
| Msa1360360 | MtrunA17_Chr1g0154211 | 43.353 | 173 | 85 | 2 | 426 | 589 | 227 | 395 | 6.87e-38 | 144 |
| Msa1360360 | MtrunA17_Chr1g0154131 | 44.545 | 330 | 129 | 9 | 27 | 353 | 194 | 472 | 1.56e-76 | 251 |
| Msa1360360 | MtrunA17_Chr1g0154131 | 40.994 | 161 | 88 | 1 | 422 | 582 | 319 | 472 | 2.45e-33 | 133 |
| Msa1360360 | MtrunA17_Chr1g0154131 | 36.634 | 101 | 63 | 1 | 16 | 115 | 26 | 126 | 8.31e-15 | 77.4 |
| Msa1360360 | MtrunA17_Chr1g0154111 | 41.899 | 358 | 178 | 9 | 17 | 359 | 26 | 368 | 2.74e-72 | 243 |
| Msa1360360 | MtrunA17_Chr1g0154111 | 45.679 | 162 | 82 | 3 | 426 | 587 | 212 | 367 | 5.36e-35 | 139 |
| Msa1360360 | MtrunA17_Chr1g0154191 | 40.361 | 332 | 155 | 7 | 293 | 596 | 56 | 372 | 7.78e-64 | 214 |
| Msa1360360 | MtrunA17_Chr1g0154191 | 36.538 | 364 | 191 | 10 | 17 | 360 | 22 | 365 | 1.38e-60 | 206 |
| Msa1360360 | MtrunA17_Chr1g0154161 | 39.884 | 346 | 160 | 11 | 252 | 596 | 27 | 325 | 1.40e-62 | 209 |
| Msa1360360 | MtrunA17_Chr1g0154161 | 36.207 | 348 | 162 | 8 | 15 | 360 | 29 | 318 | 7.05e-54 | 186 |
| Msa1360360 | MtrunA17_Chr1g0154171 | 39.444 | 360 | 183 | 11 | 252 | 595 | 20 | 360 | 3.46e-61 | 207 |
| Msa1360360 | MtrunA17_Chr1g0154171 | 36.134 | 357 | 193 | 9 | 15 | 360 | 22 | 354 | 1.39e-56 | 194 |
| Msa1360360 | MtrunA17_Chr1g0154151 | 37.464 | 347 | 174 | 9 | 31 | 367 | 20 | 333 | 2.42e-58 | 198 |
| Msa1360360 | MtrunA17_Chr1g0154151 | 37.888 | 322 | 175 | 7 | 272 | 587 | 20 | 322 | 4.78e-50 | 176 |
| Msa1360360 | MtrunA17_Chr1g0154121 | 66.279 | 86 | 27 | 1 | 278 | 361 | 1 | 86 | 8.69e-31 | 115 |
| Msa1360360 | MtrunA17_Chr1g0154121 | 46.000 | 100 | 43 | 2 | 508 | 596 | 2 | 101 | 1.58e-21 | 89.7 |
| Msa1360360 | MtrunA17_Chr6g0464121 | 69.333 | 75 | 22 | 1 | 274 | 347 | 113 | 187 | 1.41e-27 | 114 |
| Msa1360360 | MtrunA17_Chr7g0233561 | 27.679 | 336 | 186 | 11 | 11 | 338 | 13 | 299 | 5.22e-25 | 106 |
| Msa1360360 | MtrunA17_Chr1g0163071 | 25.868 | 317 | 200 | 6 | 31 | 347 | 2 | 283 | 5.12e-24 | 102 |
| Msa1360360 | MtrunA17_Chr8g0390841 | 22.438 | 566 | 321 | 20 | 28 | 576 | 52 | 516 | 3.71e-22 | 100 |
| Msa1360360 | MtrunA17_Chr7g0233521 | 25.080 | 311 | 168 | 8 | 31 | 338 | 2 | 250 | 5.22e-19 | 87.8 |
| Msa1360360 | MtrunA17_Chr4g0033961 | 23.250 | 400 | 236 | 11 | 14 | 353 | 4 | 392 | 6.52e-19 | 89.7 |
| Msa1360360 | MtrunA17_Chr1g0154251 | 24.468 | 376 | 222 | 14 | 15 | 336 | 26 | 393 | 2.46e-15 | 79.0 |
| Msa1360360 | MtrunA17_Chr1g0162441 | 28.188 | 149 | 106 | 1 | 13 | 160 | 4 | 152 | 1.18e-14 | 76.6 |
| Msa1360360 | MtrunA17_Chr1g0154241 | 34.314 | 102 | 66 | 1 | 15 | 115 | 21 | 122 | 1.94e-14 | 73.9 |
| Msa1360360 | MtrunA17_Chr1g0162411 | 35.870 | 92 | 58 | 1 | 14 | 104 | 5 | 96 | 2.20e-12 | 69.3 |
| Msa1360360 | MtrunA17_Chr7g0233571 | 34.021 | 97 | 63 | 1 | 15 | 110 | 9 | 105 | 1.23e-11 | 64.7 |
| Msa1360360 | MtrunA17_Chr3g0103151 | 29.457 | 129 | 85 | 4 | 15 | 143 | 11 | 133 | 5.75e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360360 | AT3G18990.2 | 25.405 | 370 | 229 | 13 | 13 | 361 | 3 | 346 | 1.91e-23 | 102 |
| Msa1360360 | AT3G18990.1 | 25.562 | 356 | 218 | 13 | 13 | 347 | 3 | 332 | 4.71e-23 | 101 |
| Msa1360360 | AT4G33280.3 | 23.932 | 351 | 227 | 13 | 15 | 336 | 24 | 363 | 7.14e-14 | 74.3 |
| Msa1360360 | AT5G66980.1 | 21.777 | 349 | 215 | 12 | 15 | 348 | 9 | 314 | 1.18e-13 | 72.8 |
| Msa1360360 | AT3G06220.1 | 26.712 | 146 | 98 | 2 | 14 | 158 | 8 | 145 | 2.65e-13 | 68.9 |
| Msa1360360 | AT5G42700.2 | 32.110 | 109 | 69 | 1 | 475 | 583 | 76 | 179 | 3.92e-12 | 65.9 |
| Msa1360360 | AT5G42700.2 | 30.556 | 144 | 89 | 3 | 216 | 354 | 42 | 179 | 5.02e-12 | 65.5 |
| Msa1360360 | AT3G06160.5 | 26.733 | 101 | 74 | 0 | 14 | 114 | 8 | 108 | 5.42e-12 | 67.8 |
| Msa1360360 | AT3G06160.4 | 26.733 | 101 | 74 | 0 | 14 | 114 | 8 | 108 | 5.42e-12 | 67.8 |
| Msa1360360 | AT3G06160.3 | 26.733 | 101 | 74 | 0 | 14 | 114 | 8 | 108 | 5.42e-12 | 67.8 |
| Msa1360360 | AT3G06160.2 | 26.733 | 101 | 74 | 0 | 14 | 114 | 67 | 167 | 5.68e-12 | 68.2 |
| Msa1360360 | AT3G06160.1 | 26.733 | 101 | 74 | 0 | 14 | 114 | 23 | 123 | 5.72e-12 | 67.8 |
| Msa1360360 | AT5G42700.1 | 32.075 | 106 | 67 | 1 | 475 | 580 | 121 | 221 | 7.42e-12 | 65.9 |
| Msa1360360 | AT5G42700.1 | 30.556 | 144 | 89 | 3 | 216 | 354 | 87 | 224 | 1.08e-11 | 65.5 |
Find 138 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGATAATGACATCAATTT+TGG | 0.121301 | tig0017059:+50346 | Msa1360360:CDS |
| CAATGTTTGATTATTGATTT+TGG | 0.135050 | tig0017059:+46315 | Msa1360360:five_prime_UTR |
| TGCTGAGGTGATTTCTTCTT+TGG | 0.181730 | tig0017059:+47749 | Msa1360360:CDS |
| CATTTCACCGTGCAAGTATT+TGG | 0.220691 | tig0017059:+47636 | Msa1360360:CDS |
| GAGCTAACTTTAGGTTTCTT+TGG | 0.250603 | tig0017059:-49471 | None:intergenic |
| GTTTGAATTCGATTGATTAA+TGG | 0.251858 | tig0017059:+46396 | Msa1360360:exon |
| GCATATATCTGGAAGTATTA+TGG | 0.252813 | tig0017059:-49449 | None:intergenic |
| TTAGCGATGATACAACTAAT+TGG | 0.263378 | tig0017059:-50628 | None:intergenic |
| ATCTACTAAGCCACTGCTTT+TGG | 0.270341 | tig0017059:+50675 | Msa1360360:three_prime_UTR |
| GAAGGTCTTGACCATCAAAT+TGG | 0.285624 | tig0017059:+50436 | Msa1360360:CDS |
| TGCGGATTAGTTTCATTAAC+TGG | 0.291460 | tig0017059:+47474 | Msa1360360:CDS |
| ATTGTTCTGCCTTTGGCATC+TGG | 0.293818 | tig0017059:-50289 | None:intergenic |
| AGGTTTCTTTGGCATATATC+TGG | 0.305794 | tig0017059:-49460 | None:intergenic |
| CTGCACTTTGAGCTAACTTT+AGG | 0.312808 | tig0017059:-49480 | None:intergenic |
| TTTGAATTCGATTGATTAAT+GGG | 0.316339 | tig0017059:+46397 | Msa1360360:exon |
| TGGTCTAACCAACTCATAAT+TGG | 0.316491 | tig0017059:-47859 | None:intergenic |
| ATAATCTTTGTCTTGCAGTT+TGG | 0.320704 | tig0017059:-49168 | None:intergenic |
| GTTTCACGTGCCCAATTTGA+TGG | 0.328477 | tig0017059:-50447 | None:intergenic |
| TGTGCAGCAGAGAACTGATA+TGG | 0.328537 | tig0017059:-50196 | None:intergenic |
| ACTAGCTGAACATTCTTTGC+AGG | 0.330880 | tig0017059:-47910 | None:intergenic |
| CTTCCTTCCCACTTCTATAC+AGG | 0.338352 | tig0017059:-48164 | None:intergenic |
| TGTGACATCGAAAATTGATA+TGG | 0.348004 | tig0017059:-49141 | None:intergenic |
| TTTACAATATGGCGACCTTT+TGG | 0.367843 | tig0017059:+47590 | Msa1360360:CDS |
| GGAGATCATCATTTACAATA+TGG | 0.369169 | tig0017059:+47579 | Msa1360360:CDS |
| ATTTCTTCTTTGGATGTTGT+TGG | 0.376542 | tig0017059:+47759 | Msa1360360:CDS |
| TTCTCAAACCAGCTTTAGCC+TGG | 0.378926 | tig0017059:-49967 | None:intergenic |
| GTTTCTCTGATCATACTGAT+TGG | 0.381923 | tig0017059:-47879 | None:intergenic |
| TTGAATTCAATGGCTAAAAC+AGG | 0.382436 | tig0017059:-49552 | None:intergenic |
| GAGCCTGAGTTGGCTATTGC+TGG | 0.383202 | tig0017059:+47825 | Msa1360360:CDS |
| GTGATGCAGGTTCATATATC+CGG | 0.383257 | tig0017059:+50403 | Msa1360360:CDS |
| ACCGGATTTCTTGAATTCAA+TGG | 0.386457 | tig0017059:-49562 | None:intergenic |
| CAAGAACATTAGCAAGTAGA+TGG | 0.398461 | tig0017059:-50496 | None:intergenic |
| ATTAATGGGTCGTGAGTGTA+AGG | 0.408425 | tig0017059:+46411 | Msa1360360:exon |
| GAAAAGAGGACGTAAATGAT+TGG | 0.410999 | tig0017059:-48254 | None:intergenic |
| GCCATTGAATTCAAGAAATC+CGG | 0.411437 | tig0017059:+49561 | Msa1360360:CDS |
| TTAAACTTCAATAATATTGA+AGG | 0.413589 | tig0017059:+47714 | Msa1360360:CDS |
| CTTGTATGCACTCTAGTTGT+TGG | 0.420097 | tig0017059:-49234 | None:intergenic |
| TCATCAATATGATATGATAA+TGG | 0.426978 | tig0017059:-46011 | None:intergenic |
| ATGTCGTGCCCTCCATTTGA+TGG | 0.432582 | tig0017059:-47452 | None:intergenic |
| GATTATTCTTTATAATTTGA+AGG | 0.433632 | tig0017059:+49185 | Msa1360360:CDS |
| AAATTGGTTTCGTTAAGAAA+TGG | 0.440445 | tig0017059:+45957 | None:intergenic |
| TTACTATTTCCTGTTTGAAA+AGG | 0.440868 | tig0017059:-47945 | None:intergenic |
| ACAGATCAATCAATCTCAAA+TGG | 0.450374 | tig0017059:+50527 | Msa1360360:three_prime_UTR |
| CGTGTTCGCATTGCTGAGGT+TGG | 0.454549 | tig0017059:+49354 | Msa1360360:CDS |
| TTCTTCAACCTCTCAATCTC+TGG | 0.460887 | tig0017059:+46480 | Msa1360360:CDS |
| TTTAACAAAATATGGAAAAG+AGG | 0.462248 | tig0017059:-48268 | None:intergenic |
| CTAGATCGCTGACCAAGTTA+AGG | 0.465446 | tig0017059:+50855 | Msa1360360:three_prime_UTR |
| CGAAGTAGTTGAAGCTCTAC+CGG | 0.467583 | tig0017059:-49580 | None:intergenic |
| TAGCGATGATACAACTAATT+GGG | 0.467856 | tig0017059:-50627 | None:intergenic |
| TCATGGATGGTCAACATTTG+TGG | 0.468855 | tig0017059:+47557 | Msa1360360:CDS |
| GGTGTGAATTGTTCTGCCTT+TGG | 0.469200 | tig0017059:-50296 | None:intergenic |
| CTGGTCCTAGTGGAAATACT+TGG | 0.471402 | tig0017059:+47493 | Msa1360360:CDS |
| CACTCTATGTGGAGGATGGA+TGG | 0.472108 | tig0017059:+49260 | Msa1360360:CDS |
| TTCAACTACTTCGAAGAAGA+TGG | 0.472680 | tig0017059:+49590 | Msa1360360:CDS |
| AGAGATTGAGAGGTTGAAGA+AGG | 0.474879 | tig0017059:-46478 | None:intergenic |
| TGATACAACTAATTGGGATC+TGG | 0.476883 | tig0017059:-50621 | None:intergenic |
| CTAAGTTCCCAGGCTAAAGC+TGG | 0.489551 | tig0017059:+49959 | Msa1360360:CDS |
| AAAAGAGGACGTAAATGATT+GGG | 0.490021 | tig0017059:-48253 | None:intergenic |
| ATTTGATGGACAAAACCATC+TGG | 0.494945 | tig0017059:-47438 | None:intergenic |
| AAGGTCTTGACCATCAAATT+GGG | 0.499167 | tig0017059:+50437 | Msa1360360:CDS |
| ATACGAACCACTGACATTGA+AGG | 0.499194 | tig0017059:-48301 | None:intergenic |
| AATCATCTGTTCTTCCATCA+TGG | 0.499739 | tig0017059:+47540 | Msa1360360:CDS |
| GCAAGTTCGATTAGTTGAGC+AGG | 0.500057 | tig0017059:+47515 | Msa1360360:CDS |
| TGATGCAGGTTCATATATCC+GGG | 0.500346 | tig0017059:+50404 | Msa1360360:CDS |
| ATTATTCTTTATAATTTGAA+GGG | 0.502841 | tig0017059:+49186 | Msa1360360:CDS |
| ACACGGAGGGACAGTGTTGT+TGG | 0.510424 | tig0017059:-46073 | None:intergenic |
| CGTATCTCATTATGTGATGC+AGG | 0.510845 | tig0017059:+50390 | Msa1360360:CDS |
| GTGCGACGCCATCGAGAACC+AGG | 0.511386 | tig0017059:+47803 | Msa1360360:CDS |
| GGAAATAGTAATGAAGTTGA+AGG | 0.516580 | tig0017059:+47957 | Msa1360360:CDS |
| AGAAATTACCAGAGATTGAG+AGG | 0.520071 | tig0017059:-46488 | None:intergenic |
| CATGGATGGTCAACATTTGT+GGG | 0.520091 | tig0017059:+47558 | Msa1360360:CDS |
| TCAGTAGGCTCGTGAAATGT+TGG | 0.521161 | tig0017059:+50734 | Msa1360360:three_prime_UTR |
| AGGCTCGTGAAATGTTGGTC+TGG | 0.524564 | tig0017059:+50739 | Msa1360360:three_prime_UTR |
| CAGGTGTTGCGCTGAGGCAA+AGG | 0.527024 | tig0017059:+46250 | Msa1360360:intron |
| TCATATATCCGGGGTTGGAA+AGG | 0.529986 | tig0017059:+50414 | Msa1360360:CDS |
| TCTTCAACACGATGTTTCCT+CGG | 0.530379 | tig0017059:-49932 | None:intergenic |
| CAATAGCCAACTCAGGCTCC+TGG | 0.530813 | tig0017059:-47821 | None:intergenic |
| AAATCTATCCAATTATGAGT+TGG | 0.532358 | tig0017059:+47851 | Msa1360360:CDS |
| TCAACTACTTCGAAGAAGAT+GGG | 0.533657 | tig0017059:+49591 | Msa1360360:CDS |
| GCAATTCAAGAGGCCAGTGT+TGG | 0.538663 | tig0017059:+50251 | Msa1360360:CDS |
| CGTGGCAATAGCATAAAAGT+TGG | 0.540845 | tig0017059:+49291 | Msa1360360:CDS |
| GAATATGATCAACCTTAACT+TGG | 0.542669 | tig0017059:-50867 | None:intergenic |
| CTCAGGCTCCTGGTTCTCGA+TGG | 0.547387 | tig0017059:-47811 | None:intergenic |
| GTGAAATGTTGGTCTGGTAG+AGG | 0.547760 | tig0017059:+50745 | Msa1360360:three_prime_UTR |
| GCAGTAGTATATAAATTTCG+AGG | 0.547864 | tig0017059:+46281 | Msa1360360:five_prime_UTR |
| CAAATGTTGACCATCCATGA+TGG | 0.553915 | tig0017059:-47554 | None:intergenic |
| CAGGTTCATATATCCGGGGT+TGG | 0.554905 | tig0017059:+50409 | Msa1360360:CDS |
| CCTCGTATCTGAAAACCAAA+AGG | 0.559251 | tig0017059:-47605 | None:intergenic |
| TTCCTGTTTGAAAAGGAACA+TGG | 0.559808 | tig0017059:-47938 | None:intergenic |
| TTAAAGAGATGATAGAAGTG+AGG | 0.559846 | tig0017059:-46454 | None:intergenic |
| ATATCCGGGGTTGGAAAGGA+AGG | 0.561335 | tig0017059:+50418 | Msa1360360:CDS |
| ATCTGTTCTTCCATCATGGA+TGG | 0.561421 | tig0017059:+47544 | Msa1360360:CDS |
| TTACCAGCAATAGCCAACTC+AGG | 0.564889 | tig0017059:-47828 | None:intergenic |
| ATAATTTGAAGGGAGAACAC+TGG | 0.567172 | tig0017059:+49196 | Msa1360360:CDS |
| AATGGGTTAGACTGCCAGGT+TGG | 0.568245 | tig0017059:+49381 | Msa1360360:CDS |
| CAAATGGAGGGCACGACATG+CGG | 0.572358 | tig0017059:+47456 | Msa1360360:CDS |
| CGAGAACCAGGAGCCTGAGT+TGG | 0.572650 | tig0017059:+47815 | Msa1360360:CDS |
| GTTACGCTTCGCAATTCAAG+AGG | 0.575759 | tig0017059:+50241 | Msa1360360:CDS |
| GTTTCATTAACTGGTCCTAG+TGG | 0.577634 | tig0017059:+47483 | Msa1360360:CDS |
| ATGAAGAAGTTCAATGTCAG+TGG | 0.577831 | tig0017059:+50061 | Msa1360360:CDS |
| GAGATTGAGAGGTTGAAGAA+GGG | 0.578022 | tig0017059:-46477 | None:intergenic |
| AAGACCTTCCTTTCCAACCC+CGG | 0.580500 | tig0017059:-50422 | None:intergenic |
| TGTCAGTGGTTCGTATACTC+TGG | 0.580584 | tig0017059:+48308 | Msa1360360:CDS |
| CATACAAGTCACACTCTATG+TGG | 0.582424 | tig0017059:+49249 | Msa1360360:CDS |
| GCAGCAATCCTGTATAGAAG+TGG | 0.586525 | tig0017059:+48156 | Msa1360360:CDS |
| GTCACACTCTATGTGGAGGA+TGG | 0.589858 | tig0017059:+49256 | Msa1360360:CDS |
| TCTCAAACCAGCTTTAGCCT+GGG | 0.589973 | tig0017059:-49966 | None:intergenic |
| TGAAGATGAACTAAGTTCCC+AGG | 0.590157 | tig0017059:+49949 | Msa1360360:CDS |
| GAGATGTTCCGAAGAAAATG+AGG | 0.590900 | tig0017059:+47781 | Msa1360360:CDS |
| GTGCAGCAGAGAACTGATAT+GGG | 0.592876 | tig0017059:-50195 | None:intergenic |
| GATGTCATTATCACGAACAA+AGG | 0.594099 | tig0017059:-50338 | None:intergenic |
| ATCAAAACCTTCAATGTCAG+TGG | 0.599816 | tig0017059:+48294 | Msa1360360:CDS |
| CTTTGGGTTCAGTAGTTACG+AGG | 0.601823 | tig0017059:-46100 | None:intergenic |
| TGTCAGTGGATCATACACTT+TGG | 0.614461 | tig0017059:+50075 | Msa1360360:CDS |
| GATTGTCTATAACATTCAGT+AGG | 0.614697 | tig0017059:+50719 | Msa1360360:three_prime_UTR |
| CAGCAATCCTGTATAGAAGT+GGG | 0.617200 | tig0017059:+48157 | Msa1360360:CDS |
| CAACTACTTCGAAGAAGATG+GGG | 0.619729 | tig0017059:+49592 | Msa1360360:CDS |
| ACTTGCCAAGTATTTCCACT+AGG | 0.637449 | tig0017059:-47498 | None:intergenic |
| ATTACGTGTTCGCATTGCTG+AGG | 0.639477 | tig0017059:+49350 | Msa1360360:CDS |
| AACTCTGTTCCAGATGCCAA+AGG | 0.640736 | tig0017059:+50280 | Msa1360360:CDS |
| ATGATAAGAACCAAAAGCAG+TGG | 0.641516 | tig0017059:-50685 | None:intergenic |
| AATCCTGTATAGAAGTGGGA+AGG | 0.661650 | tig0017059:+48161 | Msa1360360:CDS |
| ATTCTCACCAAATACTTGCA+CGG | 0.664539 | tig0017059:-47643 | None:intergenic |
| AGTAGTTACGAGGAGAAACA+CGG | 0.669808 | tig0017059:-46090 | None:intergenic |
| TAGCTCAAAGTGCAGAACGA+AGG | 0.671058 | tig0017059:+49488 | Msa1360360:CDS |
| ACAAGTCACACTCTATGTGG+AGG | 0.673956 | tig0017059:+49252 | Msa1360360:CDS |
| TTAATGGGTCGTGAGTGTAA+GGG | 0.677928 | tig0017059:+46412 | Msa1360360:exon |
| CTCGTAACTACTGAACCCAA+AGG | 0.682460 | tig0017059:+46101 | Msa1360360:five_prime_UTR |
| TTTGACCAGGTGTTGCGCTG+AGG | 0.683475 | tig0017059:+46244 | Msa1360360:intron |
| GTTACGAGGAGAAACACGGA+GGG | 0.686153 | tig0017059:-46086 | None:intergenic |
| CAGAGTTTACAATCCAACAC+TGG | 0.686442 | tig0017059:-50264 | None:intergenic |
| TTAATGCAGAGAGTTCCAGA+TGG | 0.692519 | tig0017059:+47423 | Msa1360360:intron |
| AGGACAGAAAAGTGATGCTG+AGG | 0.705655 | tig0017059:+47734 | Msa1360360:CDS |
| AAGCTCCGCTGAGAATATCG+TGG | 0.711691 | tig0017059:-48191 | None:intergenic |
| AAACAAAGACAGCTGTACCG+AGG | 0.720792 | tig0017059:+49915 | Msa1360360:intron |
| GATGCAGGTTCATATATCCG+GGG | 0.727717 | tig0017059:+50405 | Msa1360360:CDS |
| GATGACCACGATATTCTCAG+CGG | 0.779588 | tig0017059:+48186 | Msa1360360:CDS |
| AGTTACGAGGAGAAACACGG+AGG | 0.804934 | tig0017059:-46087 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTGAGATTTTTAAAAAA+TGG | + | tig0017059:46958-46977 | Msa1360360:intron | 10.0% |
| !!! | TTGATTATTTTAACAAAATA+TGG | - | tig0017059:48279-48298 | None:intergenic | 10.0% |
| !! | ATTATTCTTTATAATTTGAA+GGG | + | tig0017059:49186-49205 | Msa1360360:CDS | 10.0% |
| !! | ATTAAAAAATAATTGAAGGA+GGG | - | tig0017059:46189-46208 | None:intergenic | 15.0% |
| !! | ACAGATTAAAAAATAATTGA+AGG | - | tig0017059:46193-46212 | None:intergenic | 15.0% |
| !!! | TTGATATCATAAAATACTTT+TGG | + | tig0017059:47375-47394 | Msa1360360:intron | 15.0% |
| !! | TTAAACTTCAATAATATTGA+AGG | + | tig0017059:47714-47733 | Msa1360360:CDS | 15.0% |
| !! | GATAAATTATAAATGACAAA+AGG | - | tig0017059:48344-48363 | None:intergenic | 15.0% |
| !! | TAAAATAAGTCAATCAAAAT+GGG | + | tig0017059:48811-48830 | Msa1360360:intron | 15.0% |
| !! | GATTATTCTTTATAATTTGA+AGG | + | tig0017059:49185-49204 | Msa1360360:CDS | 15.0% |
| !!! | TATTTTTTTTACAATTGCAA+TGG | + | tig0017059:49785-49804 | Msa1360360:intron | 15.0% |
| !! | TCATCAATATGATATGATAA+TGG | - | tig0017059:46014-46033 | None:intergenic | 20.0% |
| !! | GATTAAAAAATAATTGAAGG+AGG | - | tig0017059:46190-46209 | None:intergenic | 20.0% |
| !!! | CAATGTTTGATTATTGATTT+TGG | + | tig0017059:46315-46334 | Msa1360360:five_prime_UTR | 20.0% |
| !! | TTTGAATTCGATTGATTAAT+GGG | + | tig0017059:46397-46416 | Msa1360360:exon | 20.0% |
| !! | ATAAATTGAAACATGCAATT+AGG | - | tig0017059:46531-46550 | None:intergenic | 20.0% |
| !!! | ATAACTTACAACATATTTTG+TGG | + | tig0017059:46615-46634 | Msa1360360:intron | 20.0% |
| !!! | ACTCTAAAAGAAAATACTTT+TGG | - | tig0017059:46886-46905 | None:intergenic | 20.0% |
| !!! | ATTTTCTTTTAGAGTATGTT+TGG | + | tig0017059:46891-46910 | Msa1360360:intron | 20.0% |
| !!! | ATTCCAAATCAATACTTTTT+GGG | - | tig0017059:47230-47249 | None:intergenic | 20.0% |
| !!! | AATTCCAAATCAATACTTTT+TGG | - | tig0017059:47231-47250 | None:intergenic | 20.0% |
| !! | TTAAATAAAATGATAAGCTC+TGG | - | tig0017059:48104-48123 | None:intergenic | 20.0% |
| !! | TTTAACAAAATATGGAAAAG+AGG | - | tig0017059:48271-48290 | None:intergenic | 20.0% |
| !! | AAGATAAAACAGCATTATTT+GGG | - | tig0017059:48368-48387 | None:intergenic | 20.0% |
| !! | CTAAAATAAGTCAATCAAAA+TGG | + | tig0017059:48810-48829 | Msa1360360:intron | 20.0% |
| !!! | GTTTCTTATTTTAAGTTTCA+TGG | + | tig0017059:49025-49044 | Msa1360360:intron | 20.0% |
| !!! | ATTTTCACAAAATTAGGAAA+TGG | - | tig0017059:50040-50059 | None:intergenic | 20.0% |
| !!! | TTCATGATTTTCACAAAATT+AGG | - | tig0017059:50046-50065 | None:intergenic | 20.0% |
| !!! | TTCATTATTTTTGTTTGACC+AGG | + | tig0017059:46231-46250 | Msa1360360:intron | 25.0% |
| ! | GAATTTAAAAACAAAGAGAC+AGG | + | tig0017059:46374-46393 | Msa1360360:five_prime_UTR | 25.0% |
| ! | GTTTGAATTCGATTGATTAA+TGG | + | tig0017059:46396-46415 | Msa1360360:exon | 25.0% |
| !! | ATTTTGTGGACAAGTAAAAT+TGG | + | tig0017059:46629-46648 | Msa1360360:intron | 25.0% |
| !!! | TCTAAGATGTTTATCTTTTG+AGG | + | tig0017059:46664-46683 | Msa1360360:intron | 25.0% |
| !! | CGATTTTCTTTTCAAAATCA+AGG | - | tig0017059:47058-47077 | None:intergenic | 25.0% |
| !!! | AAATCAATACTTTTTGGGAA+AGG | - | tig0017059:47225-47244 | None:intergenic | 25.0% |
| !!! | TTTCCCAAAAAGTATTGATT+TGG | + | tig0017059:47224-47243 | Msa1360360:intron | 25.0% |
| !!! | AGTATTGATTTGGAATTGAT+TGG | + | tig0017059:47234-47253 | Msa1360360:intron | 25.0% |
| ! | AAATCTATCCAATTATGAGT+TGG | + | tig0017059:47851-47870 | Msa1360360:CDS | 25.0% |
| ! | TTACTATTTCCTGTTTGAAA+AGG | - | tig0017059:47948-47967 | None:intergenic | 25.0% |
| ! | GAAGATAAAACAGCATTATT+TGG | - | tig0017059:48369-48388 | None:intergenic | 25.0% |
| ! | ATTTGTTTGCATAGCTATTT+AGG | - | tig0017059:48667-48686 | None:intergenic | 25.0% |
| ! | TATTATTCATAAGCTTGTCA+AGG | - | tig0017059:48762-48781 | None:intergenic | 25.0% |
| !! | AATATAATTTGCCATCTAGT+GGG | - | tig0017059:49676-49695 | None:intergenic | 25.0% |
| ! | TAGTGAAAGAAAGAACAAAA+AGG | + | tig0017059:49819-49838 | Msa1360360:intron | 25.0% |
| !!! | CTCAAATGGAGATTTTTTTT+TGG | + | tig0017059:50541-50560 | Msa1360360:three_prime_UTR | 25.0% |
| GCAGTAGTATATAAATTTCG+AGG | + | tig0017059:46281-46300 | Msa1360360:five_prime_UTR | 30.0% | |
| TTAAAGAGATGATAGAAGTG+AGG | - | tig0017059:46457-46476 | None:intergenic | 30.0% | |
| ! | AAGTAAAATTGGAAGCACAT+GGG | + | tig0017059:46640-46659 | Msa1360360:intron | 30.0% |
| TCAAAAGCTAAATGTGTGTT+TGG | + | tig0017059:46688-46707 | Msa1360360:intron | 30.0% | |
| TAAATGTGTGTTTGGATTGA+CGG | + | tig0017059:46696-46715 | Msa1360360:intron | 30.0% | |
| !! | GTTTTGGTAAAACTAGAGTT+TGG | + | tig0017059:46751-46770 | Msa1360360:intron | 30.0% |
| !!! | TCTTTTAGAGTATGTTTGGA+TGG | + | tig0017059:46895-46914 | Msa1360360:intron | 30.0% |
| AGAGTGATTGAAATGTTGTA+TGG | - | tig0017059:47005-47024 | None:intergenic | 30.0% | |
| ATAGTTTCTCAGCTTCTTAT+AGG | - | tig0017059:47167-47186 | None:intergenic | 30.0% | |
| ! | GTTACTCTCTGCATTTTTAA+TGG | - | tig0017059:47260-47279 | None:intergenic | 30.0% |
| ATACATGATACTGGAAATTG+AGG | - | tig0017059:47323-47342 | None:intergenic | 30.0% | |
| CTTGTTTAGATACATGATAC+TGG | - | tig0017059:47332-47351 | None:intergenic | 30.0% | |
| GGAGATCATCATTTACAATA+TGG | + | tig0017059:47579-47598 | Msa1360360:CDS | 30.0% | |
| ATTTCTTCTTTGGATGTTGT+TGG | + | tig0017059:47759-47778 | Msa1360360:CDS | 30.0% | |
| GGAAATAGTAATGAAGTTGA+AGG | + | tig0017059:47957-47976 | Msa1360360:CDS | 30.0% | |
| TAGCAAATTCGATTTCATTC+TGG | + | tig0017059:47982-48001 | Msa1360360:intron | 30.0% | |
| AGCAAATTCGATTTCATTCT+GGG | + | tig0017059:47983-48002 | Msa1360360:intron | 30.0% | |
| ! | AGACAAGTATCAGTTTTCTA+GGG | - | tig0017059:48043-48062 | None:intergenic | 30.0% |
| ! | TAGACAAGTATCAGTTTTCT+AGG | - | tig0017059:48044-48063 | None:intergenic | 30.0% |
| ! | TAAGCTCTGGCATAAATATA+AGG | - | tig0017059:48091-48110 | None:intergenic | 30.0% |
| AAAAGAGGACGTAAATGATT+GGG | - | tig0017059:48256-48275 | None:intergenic | 30.0% | |
| ATCTTCTTGAGAAACTGATA+TGG | + | tig0017059:48383-48402 | Msa1360360:intron | 30.0% | |
| TAAAGGGAGAAACACTATTT+GGG | - | tig0017059:48429-48448 | None:intergenic | 30.0% | |
| ATAAAGGGAGAAACACTATT+TGG | - | tig0017059:48430-48449 | None:intergenic | 30.0% | |
| AAATGTCATAGCAGTAGAAA+AGG | - | tig0017059:48851-48870 | None:intergenic | 30.0% | |
| TGAATCTAAAAGTTTGAGCA+AGG | - | tig0017059:48967-48986 | None:intergenic | 30.0% | |
| ATAAGAAACATGTGAGTAGA+AGG | - | tig0017059:49014-49033 | None:intergenic | 30.0% | |
| TGTGACATCGAAAATTGATA+TGG | - | tig0017059:49144-49163 | None:intergenic | 30.0% | |
| ATAATCTTTGTCTTGCAGTT+TGG | - | tig0017059:49171-49190 | None:intergenic | 30.0% | |
| !! | GCATATATCTGGAAGTATTA+TGG | - | tig0017059:49452-49471 | None:intergenic | 30.0% |
| TTGAATTCAATGGCTAAAAC+AGG | - | tig0017059:49555-49574 | None:intergenic | 30.0% | |
| AAAAGCTTCCCATAAAAAGA+CGG | + | tig0017059:49629-49648 | Msa1360360:CDS | 30.0% | |
| ! | CAATATAATTTGCCATCTAG+TGG | - | tig0017059:49677-49696 | None:intergenic | 30.0% |
| ! | AAGGTAGAAACTTTTACAGA+AGG | - | tig0017059:49863-49882 | None:intergenic | 30.0% |
| GACTGAAGTCATAATTTGAA+AGG | - | tig0017059:49882-49901 | None:intergenic | 30.0% | |
| !! | CGTGATAATGACATCAATTT+TGG | + | tig0017059:50346-50365 | Msa1360360:CDS | 30.0% |
| ACAGATCAATCAATCTCAAA+TGG | + | tig0017059:50527-50546 | Msa1360360:three_prime_UTR | 30.0% | |
| TAGCGATGATACAACTAATT+GGG | - | tig0017059:50630-50649 | None:intergenic | 30.0% | |
| TTAGCGATGATACAACTAAT+TGG | - | tig0017059:50631-50650 | None:intergenic | 30.0% | |
| GATTGTCTATAACATTCAGT+AGG | + | tig0017059:50719-50738 | Msa1360360:three_prime_UTR | 30.0% | |
| AAATAATTGAAGGAGGGAGA+GGG | - | tig0017059:46183-46202 | None:intergenic | 35.0% | |
| AAAATAATTGAAGGAGGGAG+AGG | - | tig0017059:46184-46203 | None:intergenic | 35.0% | |
| AGAAATTACCAGAGATTGAG+AGG | - | tig0017059:46491-46510 | None:intergenic | 35.0% | |
| ! | CAAGTAAAATTGGAAGCACA+TGG | + | tig0017059:46639-46658 | Msa1360360:intron | 35.0% |
| ! | AGTAAAATTGGAAGCACATG+GGG | + | tig0017059:46641-46660 | Msa1360360:intron | 35.0% |
| TGACTTTGACGAAATTACTG+TGG | + | tig0017059:46719-46738 | Msa1360360:intron | 35.0% | |
| GACTTTGACGAAATTACTGT+GGG | + | tig0017059:46720-46739 | Msa1360360:intron | 35.0% | |
| ! | TTTAGAGTATGTTTGGATGG+AGG | + | tig0017059:46898-46917 | Msa1360360:intron | 35.0% |
| TTAGAGTATGTTTGGATGGA+GGG | + | tig0017059:46899-46918 | Msa1360360:intron | 35.0% | |
| TGTGTTTGGATGAAAGTTCT+CGG | - | tig0017059:47102-47121 | None:intergenic | 35.0% | |
| AAGAAGCTGAGAAACTATGT+CGG | + | tig0017059:47169-47188 | Msa1360360:intron | 35.0% | |
| !! | CAATACTTTTTGGGAAAGGT+AGG | - | tig0017059:47221-47240 | None:intergenic | 35.0% |
| ! | ATTTGATGGACAAAACCATC+TGG | - | tig0017059:47441-47460 | None:intergenic | 35.0% |
| !!! | AGATGGTTTTGTCCATCAAA+TGG | + | tig0017059:47440-47459 | Msa1360360:CDS | 35.0% |
| !! | TGCGGATTAGTTTCATTAAC+TGG | + | tig0017059:47474-47493 | Msa1360360:CDS | 35.0% |
| AATCATCTGTTCTTCCATCA+TGG | + | tig0017059:47540-47559 | Msa1360360:CDS | 35.0% | |
| ! | TTTACAATATGGCGACCTTT+TGG | + | tig0017059:47590-47609 | Msa1360360:CDS | 35.0% |
| !!! | CTTTTGGTTTTCAGATACGA+GGG | + | tig0017059:47606-47625 | Msa1360360:CDS | 35.0% |
| ATTCTCACCAAATACTTGCA+CGG | - | tig0017059:47646-47665 | None:intergenic | 35.0% | |
| TGGTCTAACCAACTCATAAT+TGG | - | tig0017059:47862-47881 | None:intergenic | 35.0% | |
| GTTTCTCTGATCATACTGAT+TGG | - | tig0017059:47882-47901 | None:intergenic | 35.0% | |
| TTCCTGTTTGAAAAGGAACA+TGG | - | tig0017059:47941-47960 | None:intergenic | 35.0% | |
| GAAAAGAGGACGTAAATGAT+TGG | - | tig0017059:48257-48276 | None:intergenic | 35.0% | |
| ATCAAAACCTTCAATGTCAG+TGG | + | tig0017059:48294-48313 | Msa1360360:CDS | 35.0% | |
| TCTTGAGAAACTGATATGGT+TGG | + | tig0017059:48387-48406 | Msa1360360:intron | 35.0% | |
| CTTGAGAAACTGATATGGTT+GGG | + | tig0017059:48388-48407 | Msa1360360:intron | 35.0% | |
| TTGAGAAACTGATATGGTTG+GGG | + | tig0017059:48389-48408 | Msa1360360:intron | 35.0% | |
| AGTGTTTCTCCCTTTATGTA+TGG | + | tig0017059:48433-48452 | Msa1360360:intron | 35.0% | |
| TACCATCCTCCATACATAAA+GGG | - | tig0017059:48445-48464 | None:intergenic | 35.0% | |
| TTACCATCCTCCATACATAA+AGG | - | tig0017059:48446-48465 | None:intergenic | 35.0% | |
| TTAGTATCAGTATGGATGGA+TGG | - | tig0017059:48530-48549 | None:intergenic | 35.0% | |
| ACTAGGACTTAGTATCAGTA+TGG | - | tig0017059:48538-48557 | None:intergenic | 35.0% | |
| AGAATAGTTCAAATCTACCC+AGG | - | tig0017059:48572-48591 | None:intergenic | 35.0% | |
| GACAAGAGTAGTAGTAGAAA+AGG | - | tig0017059:48945-48964 | None:intergenic | 35.0% | |
| TCAGCAAGAGATTTGTGTTA+AGG | - | tig0017059:49088-49107 | None:intergenic | 35.0% | |
| ATAATTTGAAGGGAGAACAC+TGG | + | tig0017059:49196-49215 | Msa1360360:CDS | 35.0% | |
| ATTGCTGAGGTTGGAAAAAA+TGG | + | tig0017059:49363-49382 | Msa1360360:CDS | 35.0% | |
| TTGCTGAGGTTGGAAAAAAT+GGG | + | tig0017059:49364-49383 | Msa1360360:CDS | 35.0% | |
| AGGTTTCTTTGGCATATATC+TGG | - | tig0017059:49463-49482 | None:intergenic | 35.0% | |
| ! | GAGCTAACTTTAGGTTTCTT+TGG | - | tig0017059:49474-49493 | None:intergenic | 35.0% |
| GCCATTGAATTCAAGAAATC+CGG | + | tig0017059:49561-49580 | Msa1360360:CDS | 35.0% | |
| ACCGGATTTCTTGAATTCAA+TGG | - | tig0017059:49565-49584 | None:intergenic | 35.0% | |
| TTCAACTACTTCGAAGAAGA+TGG | + | tig0017059:49590-49609 | Msa1360360:CDS | 35.0% | |
| TCAACTACTTCGAAGAAGAT+GGG | + | tig0017059:49591-49610 | Msa1360360:CDS | 35.0% | |
| !!! | TTATGGGAAGCTTTTGACTT+GGG | - | tig0017059:49624-49643 | None:intergenic | 35.0% |
| !! | TTTATGGGAAGCTTTTGACT+TGG | - | tig0017059:49625-49644 | None:intergenic | 35.0% |
| AAAGCTTCCCATAAAAAGAC+GGG | + | tig0017059:49630-49649 | Msa1360360:CDS | 35.0% | |
| ! | AACCTTACCCGTCTTTTTAT+GGG | - | tig0017059:49640-49659 | None:intergenic | 35.0% |
| ! | AAACCTTACCCGTCTTTTTA+TGG | - | tig0017059:49641-49660 | None:intergenic | 35.0% |
| ATGAAGAAGTTCAATGTCAG+TGG | + | tig0017059:50061-50080 | Msa1360360:CDS | 35.0% | |
| ! | AAGCGTAACTTCTGTTTTGT+AGG | - | tig0017059:50230-50249 | None:intergenic | 35.0% |
| ! | AGAACAATTCACACCTTTTG+TGG | + | tig0017059:50304-50323 | Msa1360360:CDS | 35.0% |
| ! | GAACAATTCACACCTTTTGT+GGG | + | tig0017059:50305-50324 | Msa1360360:CDS | 35.0% |
| ! | AACAATTCACACCTTTTGTG+GGG | + | tig0017059:50306-50325 | Msa1360360:CDS | 35.0% |
| GATGTCATTATCACGAACAA+AGG | - | tig0017059:50341-50360 | None:intergenic | 35.0% | |
| AAGGTCTTGACCATCAAATT+GGG | + | tig0017059:50437-50456 | Msa1360360:CDS | 35.0% | |
| CAAGAACATTAGCAAGTAGA+TGG | - | tig0017059:50499-50518 | None:intergenic | 35.0% | |
| TGATACAACTAATTGGGATC+TGG | - | tig0017059:50624-50643 | None:intergenic | 35.0% | |
| ATGATAAGAACCAAAAGCAG+TGG | - | tig0017059:50688-50707 | None:intergenic | 35.0% | |
| AGTAGTTACGAGGAGAAACA+CGG | - | tig0017059:46093-46112 | None:intergenic | 40.0% | |
| ! | ATTAATGGGTCGTGAGTGTA+AGG | + | tig0017059:46411-46430 | Msa1360360:exon | 40.0% |
| ! | TTAATGGGTCGTGAGTGTAA+GGG | + | tig0017059:46412-46431 | Msa1360360:exon | 40.0% |
| GAGATTGAGAGGTTGAAGAA+GGG | - | tig0017059:46480-46499 | None:intergenic | 40.0% | |
| AGAGATTGAGAGGTTGAAGA+AGG | - | tig0017059:46481-46500 | None:intergenic | 40.0% | |
| TTCTTCAACCTCTCAATCTC+TGG | + | tig0017059:46480-46499 | Msa1360360:CDS | 40.0% | |
| GAAATTACTGTGGGTCATTG+TGG | + | tig0017059:46729-46748 | Msa1360360:intron | 40.0% | |
| TCTGATTTCGTCGAACTCAT+GGG | + | tig0017059:46799-46818 | Msa1360360:intron | 40.0% | |
| ACAGATGCAATGTGCATGTT+TGG | - | tig0017059:46829-46848 | None:intergenic | 40.0% | |
| ! | TATGTTTGGATGGAGGGTTT+TGG | + | tig0017059:46905-46924 | Msa1360360:intron | 40.0% |
| TTTGGATGAAAGTTCTCGGA+GGG | - | tig0017059:47098-47117 | None:intergenic | 40.0% | |
| TCCAAACACACTCTTAAGCA+AGG | + | tig0017059:47112-47131 | Msa1360360:intron | 40.0% | |
| ! | ACCTTGCTTAAGAGTGTGTT+TGG | - | tig0017059:47116-47135 | None:intergenic | 40.0% |
| TTCTCAGCTTCTTATAGGCT+GGG | - | tig0017059:47162-47181 | None:intergenic | 40.0% | |
| TTTCTCAGCTTCTTATAGGC+TGG | - | tig0017059:47163-47182 | None:intergenic | 40.0% | |
| AAAGGTAGGACTATCGGATT+GGG | - | tig0017059:47207-47226 | None:intergenic | 40.0% | |
| TTTGGGAAAGGTAGGACTAT+CGG | - | tig0017059:47213-47232 | None:intergenic | 40.0% | |
| TTAATGCAGAGAGTTCCAGA+TGG | + | tig0017059:47423-47442 | Msa1360360:intron | 40.0% | |
| !!! | TGGTTTTGTCCATCAAATGG+AGG | + | tig0017059:47443-47462 | Msa1360360:CDS | 40.0% |
| !! | GGTTTTGTCCATCAAATGGA+GGG | + | tig0017059:47444-47463 | Msa1360360:CDS | 40.0% |
| GTTTCATTAACTGGTCCTAG+TGG | + | tig0017059:47483-47502 | Msa1360360:CDS | 40.0% | |
| ACTTGCCAAGTATTTCCACT+AGG | - | tig0017059:47501-47520 | None:intergenic | 40.0% | |
| ATCTGTTCTTCCATCATGGA+TGG | + | tig0017059:47544-47563 | Msa1360360:CDS | 40.0% | |
| CAAATGTTGACCATCCATGA+TGG | - | tig0017059:47557-47576 | None:intergenic | 40.0% | |
| TCATGGATGGTCAACATTTG+TGG | + | tig0017059:47557-47576 | Msa1360360:CDS | 40.0% | |
| CATGGATGGTCAACATTTGT+GGG | + | tig0017059:47558-47577 | Msa1360360:CDS | 40.0% | |
| CCTCGTATCTGAAAACCAAA+AGG | - | tig0017059:47608-47627 | None:intergenic | 40.0% | |
| !!! | CCTTTTGGTTTTCAGATACG+AGG | + | tig0017059:47605-47624 | Msa1360360:CDS | 40.0% |
| CATTTCACCGTGCAAGTATT+TGG | + | tig0017059:47636-47655 | Msa1360360:CDS | 40.0% | |
| TGCTGAGGTGATTTCTTCTT+TGG | + | tig0017059:47749-47768 | Msa1360360:CDS | 40.0% | |
| GAGATGTTCCGAAGAAAATG+AGG | + | tig0017059:47781-47800 | Msa1360360:CDS | 40.0% | |
| ACTAGCTGAACATTCTTTGC+AGG | - | tig0017059:47913-47932 | None:intergenic | 40.0% | |
| ! | GTCCATGTTCCTTTTCAAAC+AGG | + | tig0017059:47936-47955 | Msa1360360:CDS | 40.0% |
| CAGCAATCCTGTATAGAAGT+GGG | + | tig0017059:48157-48176 | Msa1360360:CDS | 40.0% | |
| AATCCTGTATAGAAGTGGGA+AGG | + | tig0017059:48161-48180 | Msa1360360:CDS | 40.0% | |
| ATACGAACCACTGACATTGA+AGG | - | tig0017059:48304-48323 | None:intergenic | 40.0% | |
| GTTTCTCCCTTTATGTATGG+AGG | + | tig0017059:48436-48455 | Msa1360360:intron | 40.0% | |
| GGACTTAGTATCAGTATGGA+TGG | - | tig0017059:48534-48553 | None:intergenic | 40.0% | |
| TCCTAGTTAATGAGTCAACC+TGG | + | tig0017059:48551-48570 | Msa1360360:intron | 40.0% | |
| CCTAGTTAATGAGTCAACCT+GGG | + | tig0017059:48552-48571 | Msa1360360:intron | 40.0% | |
| TACTTAGTGAAGATGCTGCT+TGG | + | tig0017059:48631-48650 | Msa1360360:intron | 40.0% | |
| TAGAAAAGGTCTCGAACTTG+GGG | - | tig0017059:48837-48856 | None:intergenic | 40.0% | |
| GTAGAAAAGGTCTCGAACTT+GGG | - | tig0017059:48838-48857 | None:intergenic | 40.0% | |
| AGTAGAAAAGGTCTCGAACT+TGG | - | tig0017059:48839-48858 | None:intergenic | 40.0% | |
| AGTGTGATGTAGAAGCTTCT+TGG | - | tig0017059:48912-48931 | None:intergenic | 40.0% | |
| CTTGTATGCACTCTAGTTGT+TGG | - | tig0017059:49237-49256 | None:intergenic | 40.0% | |
| CATACAAGTCACACTCTATG+TGG | + | tig0017059:49249-49268 | Msa1360360:CDS | 40.0% | |
| CGTGGCAATAGCATAAAAGT+TGG | + | tig0017059:49291-49310 | Msa1360360:CDS | 40.0% | |
| !! | AAAAAATGGGTTAGACTGCC+AGG | + | tig0017059:49377-49396 | Msa1360360:CDS | 40.0% |
| !!! | TACAAGCTAGTTTTCCAACC+TGG | - | tig0017059:49398-49417 | None:intergenic | 40.0% |
| CTGCACTTTGAGCTAACTTT+AGG | - | tig0017059:49483-49502 | None:intergenic | 40.0% | |
| CAACTACTTCGAAGAAGATG+GGG | + | tig0017059:49592-49611 | Msa1360360:CDS | 40.0% | |
| !!! | TATGGGAAGCTTTTGACTTG+GGG | - | tig0017059:49623-49642 | None:intergenic | 40.0% |
| TTCCCATAAAAAGACGGGTA+AGG | + | tig0017059:49635-49654 | Msa1360360:intron | 40.0% | |
| TCTTCAACACGATGTTTCCT+CGG | - | tig0017059:49935-49954 | None:intergenic | 40.0% | |
| TGAAGATGAACTAAGTTCCC+AGG | + | tig0017059:49949-49968 | Msa1360360:CDS | 40.0% | |
| TGTCAGTGGATCATACACTT+TGG | + | tig0017059:50075-50094 | Msa1360360:CDS | 40.0% | |
| AGTGGATCATACACTTTGGT+GGG | + | tig0017059:50079-50098 | Msa1360360:intron | 40.0% | |
| ! | TAACTTCTGTTTTGTAGGCG+GGG | - | tig0017059:50225-50244 | None:intergenic | 40.0% |
| ! | GTAACTTCTGTTTTGTAGGC+GGG | - | tig0017059:50226-50245 | None:intergenic | 40.0% |
| ! | CGTAACTTCTGTTTTGTAGG+CGG | - | tig0017059:50227-50246 | None:intergenic | 40.0% |
| CAGAGTTTACAATCCAACAC+TGG | - | tig0017059:50267-50286 | None:intergenic | 40.0% | |
| ! | ACAATTCACACCTTTTGTGG+GGG | + | tig0017059:50307-50326 | Msa1360360:CDS | 40.0% |
| CGTATCTCATTATGTGATGC+AGG | + | tig0017059:50390-50409 | Msa1360360:CDS | 40.0% | |
| GTGATGCAGGTTCATATATC+CGG | + | tig0017059:50403-50422 | Msa1360360:CDS | 40.0% | |
| TGATGCAGGTTCATATATCC+GGG | + | tig0017059:50404-50423 | Msa1360360:CDS | 40.0% | |
| GAAGGTCTTGACCATCAAAT+TGG | + | tig0017059:50436-50455 | Msa1360360:CDS | 40.0% | |
| ! | ATCTACTAAGCCACTGCTTT+TGG | + | tig0017059:50675-50694 | Msa1360360:three_prime_UTR | 40.0% |
| ! | CTTTGGGTTCAGTAGTTACG+AGG | - | tig0017059:46103-46122 | None:intergenic | 45.0% |
| CTCGTAACTACTGAACCCAA+AGG | + | tig0017059:46101-46120 | Msa1360360:five_prime_UTR | 45.0% | |
| GAGAGAGAGAGAGAACCTTT+GGG | - | tig0017059:46119-46138 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAACCTT+TGG | - | tig0017059:46120-46139 | None:intergenic | 45.0% | |
| ! | ACTGTGGGTCATTGTGGTTT+TGG | + | tig0017059:46735-46754 | Msa1360360:intron | 45.0% |
| ACGAAATCAGAGTGGCATTC+TGG | - | tig0017059:46790-46809 | None:intergenic | 45.0% | |
| TGAGTTCGACGAAATCAGAG+TGG | - | tig0017059:46798-46817 | None:intergenic | 45.0% | |
| CTCTGATTTCGTCGAACTCA+TGG | + | tig0017059:46798-46817 | Msa1360360:intron | 45.0% | |
| CTGATTTCGTCGAACTCATG+GGG | + | tig0017059:46800-46819 | Msa1360360:intron | 45.0% | |
| TTGGATGAAAGTTCTCGGAG+GGG | - | tig0017059:47097-47116 | None:intergenic | 45.0% | |
| GTTTGGATGAAAGTTCTCGG+AGG | - | tig0017059:47099-47118 | None:intergenic | 45.0% | |
| CACACTCTTAAGCAAGGTGA+AGG | + | tig0017059:47118-47137 | Msa1360360:intron | 45.0% | |
| GAAAGGTAGGACTATCGGAT+TGG | - | tig0017059:47208-47227 | None:intergenic | 45.0% | |
| ACTGGAAATTGAGGACTGTC+TGG | - | tig0017059:47314-47333 | None:intergenic | 45.0% | |
| CTGGTCCTAGTGGAAATACT+TGG | + | tig0017059:47493-47512 | Msa1360360:CDS | 45.0% | |
| ! | GCAAGTTCGATTAGTTGAGC+AGG | + | tig0017059:47515-47534 | Msa1360360:CDS | 45.0% |
| AGGACAGAAAAGTGATGCTG+AGG | + | tig0017059:47734-47753 | Msa1360360:CDS | 45.0% | |
| TTACCAGCAATAGCCAACTC+AGG | - | tig0017059:47831-47850 | None:intergenic | 45.0% | |
| GCAGCAATCCTGTATAGAAG+TGG | + | tig0017059:48156-48175 | Msa1360360:CDS | 45.0% | |
| CTTCCTTCCCACTTCTATAC+AGG | - | tig0017059:48167-48186 | None:intergenic | 45.0% | |
| GATGACCACGATATTCTCAG+CGG | + | tig0017059:48186-48205 | Msa1360360:CDS | 45.0% | |
| TGTCAGTGGTTCGTATACTC+TGG | + | tig0017059:48308-48327 | Msa1360360:CDS | 45.0% | |
| CTCCCTTTATGTATGGAGGA+TGG | + | tig0017059:48440-48459 | Msa1360360:intron | 45.0% | |
| ! | CCCAGGTTGACTCATTAACT+AGG | - | tig0017059:48555-48574 | None:intergenic | 45.0% |
| CCAACATGCATTGAAGTGCA+AGG | - | tig0017059:48598-48617 | None:intergenic | 45.0% | |
| CCTTGCACTTCAATGCATGT+TGG | + | tig0017059:48595-48614 | Msa1360360:intron | 45.0% | |
| ACAAGTCACACTCTATGTGG+AGG | + | tig0017059:49252-49271 | Msa1360360:CDS | 45.0% | |
| ATTACGTGTTCGCATTGCTG+AGG | + | tig0017059:49350-49369 | Msa1360360:CDS | 45.0% | |
| TAGCTCAAAGTGCAGAACGA+AGG | + | tig0017059:49488-49507 | Msa1360360:CDS | 45.0% | |
| CGAAGTAGTTGAAGCTCTAC+CGG | - | tig0017059:49583-49602 | None:intergenic | 45.0% | |
| !!! | ATGGGAAGCTTTTGACTTGG+GGG | - | tig0017059:49622-49641 | None:intergenic | 45.0% |
| TCCTCTATTTGCCCACTAGA+TGG | + | tig0017059:49662-49681 | Msa1360360:intron | 45.0% | |
| AAACAAAGACAGCTGTACCG+AGG | + | tig0017059:49915-49934 | Msa1360360:intron | 45.0% | |
| ! | TCTCAAACCAGCTTTAGCCT+GGG | - | tig0017059:49969-49988 | None:intergenic | 45.0% |
| ! | TTCTCAAACCAGCTTTAGCC+TGG | - | tig0017059:49970-49989 | None:intergenic | 45.0% |
| CAGTGGATCATACACTTTGG+TGG | + | tig0017059:50078-50097 | Msa1360360:intron | 45.0% | |
| GTGCAGCAGAGAACTGATAT+GGG | - | tig0017059:50198-50217 | None:intergenic | 45.0% | |
| TGTGCAGCAGAGAACTGATA+TGG | - | tig0017059:50199-50218 | None:intergenic | 45.0% | |
| GTTACGCTTCGCAATTCAAG+AGG | + | tig0017059:50241-50260 | Msa1360360:CDS | 45.0% | |
| AACTCTGTTCCAGATGCCAA+AGG | + | tig0017059:50280-50299 | Msa1360360:CDS | 45.0% | |
| ATTGTTCTGCCTTTGGCATC+TGG | - | tig0017059:50292-50311 | None:intergenic | 45.0% | |
| GGTGTGAATTGTTCTGCCTT+TGG | - | tig0017059:50299-50318 | None:intergenic | 45.0% | |
| GATGCAGGTTCATATATCCG+GGG | + | tig0017059:50405-50424 | Msa1360360:CDS | 45.0% | |
| TCATATATCCGGGGTTGGAA+AGG | + | tig0017059:50414-50433 | Msa1360360:CDS | 45.0% | |
| GTTTCACGTGCCCAATTTGA+TGG | - | tig0017059:50450-50469 | None:intergenic | 45.0% | |
| TCAGTAGGCTCGTGAAATGT+TGG | + | tig0017059:50734-50753 | Msa1360360:three_prime_UTR | 45.0% | |
| ! | GTGAAATGTTGGTCTGGTAG+AGG | + | tig0017059:50745-50764 | Msa1360360:three_prime_UTR | 45.0% |
| GTTACGAGGAGAAACACGGA+GGG | - | tig0017059:46089-46108 | None:intergenic | 50.0% | |
| AGTTACGAGGAGAAACACGG+AGG | - | tig0017059:46090-46109 | None:intergenic | 50.0% | |
| AATTGAAGGAGGGAGAGGGA+GGG | - | tig0017059:46179-46198 | None:intergenic | 50.0% | |
| TAATTGAAGGAGGGAGAGGG+AGG | - | tig0017059:46180-46199 | None:intergenic | 50.0% | |
| !! | GTTTGGATGGAGGGTTTTGG+AGG | + | tig0017059:46908-46927 | Msa1360360:intron | 50.0% |
| CAGCTTCTTATAGGCTGGGA+GGG | - | tig0017059:47158-47177 | None:intergenic | 50.0% | |
| TCAGCTTCTTATAGGCTGGG+AGG | - | tig0017059:47159-47178 | None:intergenic | 50.0% | |
| ATGTCGTGCCCTCCATTTGA+TGG | - | tig0017059:47455-47474 | None:intergenic | 50.0% | |
| ! | GCGTCGCACCTCATTTTCTT+CGG | - | tig0017059:47792-47811 | None:intergenic | 50.0% |
| AAGCTCCGCTGAGAATATCG+TGG | - | tig0017059:48194-48213 | None:intergenic | 50.0% | |
| GTCACACTCTATGTGGAGGA+TGG | + | tig0017059:49256-49275 | Msa1360360:CDS | 50.0% | |
| CACTCTATGTGGAGGATGGA+TGG | + | tig0017059:49260-49279 | Msa1360360:CDS | 50.0% | |
| ! | GGATGGATGGCTTTTGTTCG+TGG | + | tig0017059:49273-49292 | Msa1360360:CDS | 50.0% |
| !! | AATGGGTTAGACTGCCAGGT+TGG | + | tig0017059:49381-49400 | Msa1360360:CDS | 50.0% |
| ! | GCCATCTAGTGGGCAAATAG+AGG | - | tig0017059:49666-49685 | None:intergenic | 50.0% |
| CTAAGTTCCCAGGCTAAAGC+TGG | + | tig0017059:49959-49978 | Msa1360360:CDS | 50.0% | |
| GCAATTCAAGAGGCCAGTGT+TGG | + | tig0017059:50251-50270 | Msa1360360:CDS | 50.0% | |
| ! | TTCACACCTTTTGTGGGGGA+TGG | + | tig0017059:50311-50330 | Msa1360360:CDS | 50.0% |
| CAGGTTCATATATCCGGGGT+TGG | + | tig0017059:50409-50428 | Msa1360360:CDS | 50.0% | |
| ATATCCGGGGTTGGAAAGGA+AGG | + | tig0017059:50418-50437 | Msa1360360:CDS | 50.0% | |
| AAGACCTTCCTTTCCAACCC+CGG | - | tig0017059:50425-50444 | None:intergenic | 50.0% | |
| AGGCTCGTGAAATGTTGGTC+TGG | + | tig0017059:50739-50758 | Msa1360360:three_prime_UTR | 50.0% | |
| ACACGGAGGGACAGTGTTGT+TGG | - | tig0017059:46076-46095 | None:intergenic | 55.0% | |
| ! | TTTGACCAGGTGTTGCGCTG+AGG | + | tig0017059:46244-46263 | Msa1360360:intron | 55.0% |
| TGAAAGTTCTCGGAGGGGAG+AGG | - | tig0017059:47092-47111 | None:intergenic | 55.0% | |
| TAGGCTGGGAGGGAAAGTGA+GGG | - | tig0017059:47148-47167 | None:intergenic | 55.0% | |
| ATAGGCTGGGAGGGAAAGTG+AGG | - | tig0017059:47149-47168 | None:intergenic | 55.0% | |
| ! | CAAATGGAGGGCACGACATG+CGG | + | tig0017059:47456-47475 | Msa1360360:CDS | 55.0% |
| CAATAGCCAACTCAGGCTCC+TGG | - | tig0017059:47824-47843 | None:intergenic | 55.0% | |
| ! | GAGCCTGAGTTGGCTATTGC+TGG | + | tig0017059:47825-47844 | Msa1360360:CDS | 55.0% |
| CGTGTTCGCATTGCTGAGGT+TGG | + | tig0017059:49354-49373 | Msa1360360:CDS | 55.0% | |
| GGCTATCCATCCCCCACAAA+AGG | - | tig0017059:50320-50339 | None:intergenic | 55.0% | |
| CTTTGCCTCAGCGCAACACC+TGG | - | tig0017059:46252-46271 | None:intergenic | 60.0% | |
| ! | CAGGTGTTGCGCTGAGGCAA+AGG | + | tig0017059:46250-46269 | Msa1360360:intron | 60.0% |
| ! | CTCAGGCTCCTGGTTCTCGA+TGG | - | tig0017059:47814-47833 | None:intergenic | 60.0% |
| CGAGAACCAGGAGCCTGAGT+TGG | + | tig0017059:47815-47834 | Msa1360360:CDS | 60.0% | |
| GTTCTCGGAGGGGAGAGGAG+TGG | - | tig0017059:47087-47106 | None:intergenic | 65.0% | |
| GTGCGACGCCATCGAGAACC+AGG | + | tig0017059:47803-47822 | Msa1360360:CDS | 65.0% | |
| CTCGGAGGGGAGAGGAGTGG+AGG | - | tig0017059:47084-47103 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017059 | gene | 45963 | 50877 | 45963 | ID=Msa1360360;Name=Msa1360360 |
| tig0017059 | mRNA | 45963 | 50877 | 45963 | ID=Msa1360360-mRNA-1;Parent=Msa1360360;Name=Msa1360360-mRNA-1;_AED=0.04;_eAED=0.04;_QI=322|1|1|1|0.83|0.71|7|394|596 |
| tig0017059 | exon | 45963 | 46122 | 45963 | ID=Msa1360360-mRNA-1:exon:11867;Parent=Msa1360360-mRNA-1 |
| tig0017059 | exon | 46253 | 46501 | 46253 | ID=Msa1360360-mRNA-1:exon:11868;Parent=Msa1360360-mRNA-1 |
| tig0017059 | exon | 47432 | 47978 | 47432 | ID=Msa1360360-mRNA-1:exon:11869;Parent=Msa1360360-mRNA-1 |
| tig0017059 | exon | 48154 | 48329 | 48154 | ID=Msa1360360-mRNA-1:exon:11870;Parent=Msa1360360-mRNA-1 |
| tig0017059 | exon | 49135 | 49651 | 49135 | ID=Msa1360360-mRNA-1:exon:11871;Parent=Msa1360360-mRNA-1 |
| tig0017059 | exon | 49927 | 50096 | 49927 | ID=Msa1360360-mRNA-1:exon:11872;Parent=Msa1360360-mRNA-1 |
| tig0017059 | exon | 50190 | 50877 | 50190 | ID=Msa1360360-mRNA-1:exon:11873;Parent=Msa1360360-mRNA-1 |
| tig0017059 | five_prime_UTR | 45963 | 46122 | 45963 | ID=Msa1360360-mRNA-1:five_prime_utr;Parent=Msa1360360-mRNA-1 |
| tig0017059 | five_prime_UTR | 46253 | 46414 | 46253 | ID=Msa1360360-mRNA-1:five_prime_utr;Parent=Msa1360360-mRNA-1 |
| tig0017059 | CDS | 46415 | 46501 | 46415 | ID=Msa1360360-mRNA-1:cds;Parent=Msa1360360-mRNA-1 |
| tig0017059 | CDS | 47432 | 47978 | 47432 | ID=Msa1360360-mRNA-1:cds;Parent=Msa1360360-mRNA-1 |
| tig0017059 | CDS | 48154 | 48329 | 48154 | ID=Msa1360360-mRNA-1:cds;Parent=Msa1360360-mRNA-1 |
| tig0017059 | CDS | 49135 | 49651 | 49135 | ID=Msa1360360-mRNA-1:cds;Parent=Msa1360360-mRNA-1 |
| tig0017059 | CDS | 49927 | 50096 | 49927 | ID=Msa1360360-mRNA-1:cds;Parent=Msa1360360-mRNA-1 |
| tig0017059 | CDS | 50190 | 50483 | 50190 | ID=Msa1360360-mRNA-1:cds;Parent=Msa1360360-mRNA-1 |
| tig0017059 | three_prime_UTR | 50484 | 50877 | 50484 | ID=Msa1360360-mRNA-1:three_prime_utr;Parent=Msa1360360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
