AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1360940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1360940 MtrunA17_Chr3g0130731 99.658 292 1 0 1 292 1 292 0.0 612
Msa1360940 MtrunA17_Chr8g0384721 70.847 295 65 8 1 287 1 282 8.89e-144 405
Msa1360940 MtrunA17_Chr3g0124761 62.541 307 81 9 1 292 1 288 5.75e-125 358
Msa1360940 MtrunA17_Chr2g0318081 44.912 285 133 5 3 276 12 283 3.61e-74 231
Msa1360940 MtrunA17_Chr2g0318101 67.284 162 42 3 7 157 15 176 3.69e-74 231
Msa1360940 MtrunA17_Chr8g0359921 67.683 164 45 3 4 163 11 170 1.79e-73 228
Msa1360940 MtrunA17_Chr4g0047841 60.317 189 44 4 7 171 15 196 4.53e-71 223
Msa1360940 MtrunA17_Chr5g0417791 50.926 216 99 5 5 214 1 215 3.36e-70 218
Msa1360940 MtrunA17_Chr7g0252971 56.915 188 69 3 4 180 5 191 7.15e-70 219
Msa1360940 MtrunA17_Chr4g0042561 63.226 155 55 2 6 158 8 162 6.24e-69 215
Msa1360940 MtrunA17_Chr2g0326361 60.645 155 57 2 7 157 14 168 7.70e-66 209
Msa1360940 MtrunA17_Chr7g0263931 56.790 162 66 2 2 159 6 167 4.00e-64 204
Msa1360940 MtrunA17_Chr2g0309891 43.443 244 109 7 5 228 4 238 1.71e-59 193
Msa1360940 MtrunA17_Chr6g0481091 54.487 156 65 3 7 159 6 158 4.99e-57 183
Msa1360940 MtrunA17_Chr6g0453131 50.909 165 73 2 6 162 14 178 1.90e-54 181
Msa1360940 MtrunA17_Chr5g0417001 52.229 157 67 2 9 157 16 172 3.23e-54 181
Msa1360940 MtrunA17_Chr6g0484441 54.601 163 64 3 4 163 2 157 1.06e-53 177
Msa1360940 MtrunA17_Chr5g0405211 46.927 179 86 3 7 181 8 181 1.30e-53 178
Msa1360940 MtrunA17_Chr8g0361731 48.824 170 78 3 9 169 16 185 2.46e-53 178
Msa1360940 MtrunA17_Chr4g0018391 48.824 170 76 4 7 170 7 171 3.18e-53 177
Msa1360940 MtrunA17_Chr6g0453451 52.866 157 72 2 4 159 17 172 3.31e-53 176
Msa1360940 MtrunA17_Chr4g0060931 49.432 176 75 3 4 172 14 182 3.56e-53 177
Msa1360940 MtrunA17_Chr4g0076731 53.595 153 64 2 9 159 56 203 1.02e-52 178
Msa1360940 MtrunA17_Chr5g0433781 49.457 184 79 5 5 177 4 184 1.09e-52 182
Msa1360940 MtrunA17_Chr2g0309331 47.090 189 79 5 3 186 6 178 1.14e-52 175
Msa1360940 MtrunA17_Chr3g0109821 46.829 205 96 5 5 206 4 198 1.38e-52 182
Msa1360940 MtrunA17_Chr8g0372121 49.375 160 72 3 7 162 6 160 1.80e-52 174
Msa1360940 MtrunA17_Chr5g0398971 49.682 157 70 3 7 158 7 159 1.34e-51 172
Msa1360940 MtrunA17_Chr5g0400461 51.786 168 65 4 3 160 2 163 2.12e-51 172
Msa1360940 MtrunA17_Chr3g0139331 46.774 186 86 4 4 181 8 188 5.48e-51 171
Msa1360940 MtrunA17_Chr4g0056541 48.780 164 74 4 7 165 7 165 6.17e-51 171
Msa1360940 MtrunA17_Chr4g0017921 52.564 156 64 3 7 158 8 157 7.91e-51 171
Msa1360940 MtrunA17_Chr3g0091921 42.424 231 97 5 4 227 13 214 7.94e-51 169
Msa1360940 MtrunA17_Chr2g0316971 53.896 154 67 2 7 157 23 175 1.05e-50 171
Msa1360940 MtrunA17_Chr8g0346001 40.196 204 112 4 1 194 9 212 5.24e-50 171
Msa1360940 MtrunA17_Chr7g0253011 45.026 191 99 2 5 190 15 204 5.82e-50 169
Msa1360940 MtrunA17_Chr1g0200561 49.068 161 73 3 1 157 13 168 1.28e-49 167
Msa1360940 MtrunA17_Chr6g0461661 49.398 166 80 2 5 167 16 180 3.74e-49 167
Msa1360940 MtrunA17_Chr7g0214071 54.088 159 62 3 3 158 11 161 4.50e-49 163
Msa1360940 MtrunA17_Chr1g0147421 48.235 170 79 4 4 169 24 188 6.41e-49 166
Msa1360940 MtrunA17_Chr1g0183741 50.625 160 66 4 7 162 10 160 1.12e-48 163
Msa1360940 MtrunA17_Chr5g0442771 36.996 273 130 7 9 248 20 283 1.23e-48 164
Msa1360940 MtrunA17_Chr5g0428991 48.925 186 78 5 6 179 24 204 4.59e-48 169
Msa1360940 MtrunA17_Chr4g0054791 48.276 174 80 4 1 168 1 170 2.01e-47 161
Msa1360940 MtrunA17_Chr7g0217721 45.763 177 83 3 4 167 16 192 5.00e-47 161
Msa1360940 MtrunA17_Chr7g0261411 50.000 154 65 3 7 156 10 155 5.45e-47 159
Msa1360940 MtrunA17_Chr2g0312321 39.764 254 123 10 4 231 8 257 2.09e-46 158
Msa1360940 MtrunA17_Chr2g0311651 39.648 227 117 7 1 210 15 238 3.46e-46 157
Msa1360940 MtrunA17_Chr7g0217711 52.113 142 64 2 4 144 16 154 5.79e-46 153
Msa1360940 MtrunA17_Chr3g0144271 50.633 158 72 3 2 155 18 173 4.13e-45 157
Msa1360940 MtrunA17_Chr3g0128151 45.745 188 79 7 7 179 22 201 9.20e-45 159
Msa1360940 MtrunA17_Chr2g0311661 48.466 163 70 5 9 157 23 185 9.56e-45 153
Msa1360940 MtrunA17_Chr8g0385991 45.714 175 84 5 3 170 10 180 7.96e-44 149
Msa1360940 MtrunA17_Chr4g0038751 41.530 183 83 3 9 187 17 179 8.91e-43 148
Msa1360940 MtrunA17_Chr3g0130101 46.753 154 76 3 9 159 9 159 9.61e-43 150
Msa1360940 MtrunA17_Chr1g0197351 48.408 157 75 3 7 157 42 198 1.38e-42 152
Msa1360940 MtrunA17_Chr1g0201021 48.052 154 74 3 9 159 21 171 2.41e-42 153
Msa1360940 MtrunA17_Chr3g0131911 47.590 166 73 4 3 158 10 171 5.77e-42 144
Msa1360940 MtrunA17_Chr8g0364791 43.949 157 82 3 6 159 5 158 2.16e-41 148
Msa1360940 MtrunA17_Chr3g0128111 46.452 155 69 6 10 157 45 192 2.64e-41 143
Msa1360940 MtrunA17_Chr8g0345671 50.968 155 61 6 6 154 10 155 1.56e-39 142
Msa1360940 MtrunA17_Chr1g0197361 46.154 156 76 5 9 160 10 161 1.71e-39 145
Msa1360940 MtrunA17_Chr3g0092671 48.077 156 73 5 9 160 7 158 2.10e-39 144
Msa1360940 MtrunA17_Chr8g0384201 42.675 157 84 4 6 159 5 158 6.22e-39 142
Msa1360940 MtrunA17_Chr4g0026141 34.413 247 135 6 7 232 5 245 1.38e-36 131
Msa1360940 MtrunA17_Chr7g0266701 34.052 232 128 8 7 223 4 225 2.99e-35 127
Msa1360940 MtrunA17_Chr2g0321631 34.855 241 142 8 8 237 5 241 1.81e-33 122
Msa1360940 MtrunA17_Chr8g0345691 42.857 154 73 5 7 154 12 156 1.82e-32 124
Msa1360940 MtrunA17_Chr2g0321741 38.674 181 89 7 27 195 12 182 2.03e-32 122
Msa1360940 MtrunA17_Chr4g0050701 40.764 157 79 3 7 157 11 159 7.86e-32 117
Msa1360940 MtrunA17_Chr3g0113001 49.573 117 58 1 52 167 10 126 5.40e-31 117
Msa1360940 MtrunA17_Chr8g0345711 46.512 129 62 4 7 129 12 139 1.58e-30 112
Msa1360940 MtrunA17_Chr8g0345731 46.269 134 64 4 7 132 24 157 1.54e-29 110
Msa1360940 MtrunA17_Chr8g0345721 38.037 163 65 4 10 137 38 199 1.14e-26 103
Msa1360940 MtrunA17_Chr8g0384351 37.349 166 82 5 2 167 5 148 1.75e-26 102
Msa1360940 MtrunA17_Chr8g0345701 39.597 149 67 6 1 129 1 146 1.89e-24 97.1
Msa1360940 MtrunA17_Chr3g0113031 51.648 91 42 2 70 158 3 93 8.24e-24 97.8
Msa1360940 MtrunA17_Chr7g0243371 57.333 75 29 1 60 131 17 91 2.78e-22 89.7
Msa1360940 MtrunA17_Chr8g0345741 41.935 124 65 4 18 135 2 124 4.87e-22 90.1
Msa1360940 MtrunA17_Chr7g0251661 30.872 149 96 4 3 147 6 151 2.37e-19 82.8
Msa1360940 MtrunA17_Chr3g0130321 30.303 165 99 4 1 155 1 159 2.69e-19 84.0
Msa1360940 MtrunA17_Chr7g0251651 32.836 134 83 4 5 134 16 146 1.02e-17 79.3
Msa1360940 MtrunA17_Chr7g0251671 29.730 148 97 4 4 147 7 151 1.12e-16 75.9
Msa1360940 MtrunA17_Chr3g0113011 50.000 54 26 1 1 53 12 65 2.76e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1360940 AT1G01720.1 63.333 300 91 9 1 292 1 289 1.28e-123 355
Msa1360940 AT5G08790.1 66.409 259 59 8 1 252 1 238 2.53e-112 326
Msa1360940 AT5G63790.1 57.383 298 83 7 1 292 44 303 1.15e-106 313
Msa1360940 AT5G63790.2 57.383 298 83 7 1 292 54 313 1.44e-106 313
Msa1360940 AT1G77450.1 53.929 280 89 5 3 281 6 246 5.36e-99 291
Msa1360940 AT4G27410.2 70.323 155 42 2 4 157 11 162 8.94e-74 228
Msa1360940 AT3G15500.1 67.081 161 49 2 4 163 11 168 2.17e-73 228
Msa1360940 AT1G52890.1 67.081 161 49 2 4 163 11 168 4.25e-73 227
Msa1360940 AT1G61110.1 57.292 192 64 3 3 183 12 196 6.85e-71 222
Msa1360940 AT4G27410.3 63.372 172 42 3 4 157 11 179 2.61e-69 218
Msa1360940 AT1G69490.1 45.660 265 108 7 7 249 9 259 5.55e-69 215
Msa1360940 AT3G04070.1 52.830 212 69 4 7 192 10 216 4.22e-68 216
Msa1360940 AT3G04070.2 55.000 200 67 4 7 192 10 200 6.80e-68 215
Msa1360940 AT3G15510.1 66.667 159 40 4 11 157 21 178 1.30e-66 212
Msa1360940 AT1G52880.1 64.968 157 45 2 11 157 21 177 4.40e-62 199
Msa1360940 AT5G61430.1 52.941 170 78 2 4 172 13 181 1.65e-56 185
Msa1360940 AT5G07680.1 51.445 173 82 2 4 175 14 185 4.07e-55 181
Msa1360940 AT3G17730.1 51.534 163 73 4 7 166 6 165 4.92e-55 179
Msa1360940 AT5G07680.2 51.744 172 81 2 5 175 1 171 6.75e-55 181
Msa1360940 AT3G18400.1 54.037 161 69 2 4 163 2 158 9.57e-55 180
Msa1360940 AT5G39820.1 49.143 175 68 3 9 162 22 196 1.67e-54 180
Msa1360940 AT2G02450.1 54.248 153 63 2 9 159 53 200 2.70e-54 181
Msa1360940 AT2G02450.2 54.248 153 63 2 9 159 53 200 3.66e-54 181
Msa1360940 AT5G39610.1 54.321 162 60 3 5 159 18 172 4.34e-54 177
Msa1360940 AT2G33480.1 55.696 158 63 3 2 158 10 161 1.83e-53 175
Msa1360940 AT1G76420.1 53.416 161 68 3 2 159 17 173 2.22e-53 177
Msa1360940 AT2G18060.3 49.390 164 74 3 7 166 9 167 4.14e-53 177
Msa1360940 AT2G18060.1 49.390 164 74 3 7 166 9 167 4.14e-53 177
Msa1360940 AT2G24430.2 51.220 164 73 2 4 164 13 172 4.55e-53 176
Msa1360940 AT2G24430.1 51.220 164 73 2 4 164 13 172 4.55e-53 176
Msa1360940 AT2G33480.2 55.696 158 61 3 2 158 10 159 4.59e-53 174
Msa1360940 AT4G36160.1 51.923 156 66 3 7 158 10 160 8.96e-53 177
Msa1360940 AT4G36160.3 51.923 156 66 3 7 158 10 160 8.96e-53 177
Msa1360940 AT4G36160.2 51.923 156 66 3 7 158 14 164 9.85e-53 177
Msa1360940 AT5G62380.2 49.133 173 79 3 1 169 1 168 1.18e-52 176
Msa1360940 AT5G62380.1 49.133 173 79 3 1 169 1 168 1.18e-52 176
Msa1360940 AT1G26870.1 51.250 160 69 2 7 157 16 175 1.30e-52 177
Msa1360940 AT5G17260.1 52.866 157 67 4 5 157 4 157 1.41e-52 179
Msa1360940 AT1G54330.1 53.704 162 66 3 5 163 4 159 2.46e-52 173
Msa1360940 AT1G79580.3 49.701 167 73 3 3 164 13 173 4.90e-52 175
Msa1360940 AT1G79580.5 49.701 167 73 3 3 164 13 173 4.90e-52 175
Msa1360940 AT1G79580.4 49.701 167 73 3 3 164 13 173 4.90e-52 175
Msa1360940 AT1G79580.2 49.701 167 73 3 3 164 13 173 4.90e-52 175
Msa1360940 AT1G79580.1 49.701 167 73 3 3 164 13 173 4.90e-52 175
Msa1360940 AT2G43000.1 51.333 150 70 2 9 157 20 167 7.18e-52 171
Msa1360940 AT4G17980.1 51.875 160 71 3 3 157 2 160 8.07e-52 171
Msa1360940 AT4G17980.2 51.875 160 71 3 3 157 2 160 9.15e-52 172
Msa1360940 AT3G03200.1 52.866 157 67 4 5 157 4 157 9.51e-52 177
Msa1360940 AT5G53950.1 54.375 160 57 3 7 157 17 169 1.15e-51 174
Msa1360940 AT4G10350.1 50.898 167 75 3 7 169 9 172 1.26e-51 173
Msa1360940 AT5G46590.1 52.201 159 70 3 3 157 2 158 1.90e-51 171
Msa1360940 AT3G04060.1 50.595 168 80 2 2 167 15 181 2.11e-51 172
Msa1360940 AT3G29035.1 62.791 129 47 1 4 131 21 149 3.71e-51 171
Msa1360940 AT3G15170.1 50.000 166 79 2 1 163 14 178 4.06e-51 171
Msa1360940 AT1G62700.1 45.506 178 86 4 6 177 6 178 4.37e-51 173
Msa1360940 AT1G62700.2 45.506 178 86 4 6 177 6 178 4.37e-51 173
Msa1360940 AT1G12260.2 48.718 156 71 3 7 158 7 157 5.47e-51 171
Msa1360940 AT1G12260.1 48.718 156 71 3 7 158 7 157 9.69e-51 172
Msa1360940 AT5G66300.1 49.686 159 72 3 7 161 12 166 1.79e-50 168
Msa1360940 AT5G46590.2 54.167 144 62 2 3 142 2 145 2.47e-50 167
Msa1360940 AT5G18270.1 52.795 161 61 3 5 157 19 172 2.88e-50 169
Msa1360940 AT5G18270.2 52.795 161 61 3 5 157 19 172 3.04e-50 169
Msa1360940 AT1G65910.1 50.920 163 74 4 5 164 4 163 3.32e-50 175
Msa1360940 AT1G32770.1 40.826 218 116 4 1 205 10 227 3.61e-50 169
Msa1360940 AT3G10490.1 51.948 154 69 3 7 157 27 178 6.66e-50 165
Msa1360940 AT1G33280.1 51.923 156 65 3 7 158 8 157 1.07e-49 167
Msa1360940 AT1G71930.2 49.032 155 70 3 7 157 9 158 1.12e-49 167
Msa1360940 AT1G71930.1 49.032 155 70 3 7 157 9 158 1.12e-49 167
Msa1360940 AT1G32510.1 37.102 283 160 7 7 278 6 281 7.47e-49 164
Msa1360940 AT5G13180.1 54.375 160 61 4 3 158 10 161 1.16e-48 162
Msa1360940 AT4G35580.1 40.650 246 118 7 7 235 9 243 1.25e-48 169
Msa1360940 AT4G35580.3 38.148 270 127 8 7 247 9 267 1.36e-48 169
Msa1360940 AT4G35580.2 38.148 270 127 8 7 247 9 267 1.36e-48 169
Msa1360940 AT3G10490.2 51.948 154 69 3 7 157 27 178 1.66e-48 167
Msa1360940 AT3G10480.2 50.649 154 70 3 7 157 27 177 1.78e-48 167
Msa1360940 AT3G10480.1 50.649 154 71 3 7 157 27 178 4.25e-48 166
Msa1360940 AT1G33060.2 42.735 234 107 9 7 226 24 244 6.38e-48 169
Msa1360940 AT1G33060.1 42.553 235 108 9 7 227 24 245 6.70e-48 169
Msa1360940 AT5G24590.2 44.560 193 93 4 7 188 13 202 1.21e-47 165
Msa1360940 AT1G56010.2 50.000 156 76 2 4 157 16 171 3.70e-47 160
Msa1360940 AT2G46770.1 37.052 251 132 6 1 225 10 260 5.15e-47 161
Msa1360940 AT3G49530.2 48.077 156 74 3 7 158 13 165 1.05e-45 159
Msa1360940 AT3G12977.1 49.359 156 74 4 4 157 15 167 1.73e-45 155
Msa1360940 AT3G49530.1 48.077 156 74 3 7 158 13 165 3.33e-45 159
Msa1360940 AT4G28530.1 47.674 172 62 4 6 157 9 172 3.42e-45 156
Msa1360940 AT3G61910.1 43.478 184 89 6 1 170 5 187 2.72e-44 154
Msa1360940 AT3G10500.1 49.359 156 73 3 7 159 9 161 3.04e-44 158
Msa1360940 AT2G17040.1 45.783 166 77 3 1 162 1 157 3.55e-44 152
Msa1360940 AT3G12910.1 48.538 171 72 6 9 164 23 192 4.14e-44 152
Msa1360940 AT3G10480.3 42.781 187 69 3 7 157 27 211 8.98e-44 156
Msa1360940 AT5G04410.1 45.902 183 89 4 7 186 9 184 1.76e-43 156
Msa1360940 AT5G09330.5 45.000 160 82 3 3 159 2 158 4.48e-42 151
Msa1360940 AT5G09330.2 45.000 160 82 3 3 159 2 158 4.48e-42 151
Msa1360940 AT5G09330.4 45.000 160 82 3 3 159 2 158 4.48e-42 151
Msa1360940 AT5G09330.3 45.000 160 82 3 3 159 2 158 4.48e-42 151
Msa1360940 AT5G09330.1 45.000 160 82 3 3 159 2 158 4.48e-42 151
Msa1360940 AT1G34180.3 46.104 154 77 4 9 159 18 168 4.61e-41 147
Msa1360940 AT2G27300.1 44.118 170 79 4 7 174 14 169 1.84e-40 144
Msa1360940 AT1G34180.1 46.104 154 77 4 9 159 18 168 3.18e-40 147
Msa1360940 AT1G34190.1 52.381 126 57 2 9 131 18 143 1.08e-39 145
Msa1360940 AT5G64060.1 43.750 160 84 4 3 159 2 158 1.22e-39 142
Msa1360940 AT1G34180.4 42.771 166 77 4 9 159 18 180 3.37e-39 143
Msa1360940 AT3G44290.2 44.595 148 70 3 9 154 16 153 1.34e-38 135
Msa1360940 AT1G34180.2 42.771 166 77 4 9 159 18 180 1.61e-38 143
Msa1360940 AT1G32870.2 50.000 158 69 5 7 159 10 162 7.14e-38 140
Msa1360940 AT3G44290.1 44.595 148 70 3 9 154 16 153 7.58e-38 137
Msa1360940 AT1G32870.1 50.000 158 69 5 7 159 10 162 7.88e-38 140
Msa1360940 AT5G22290.1 44.444 153 72 4 9 158 23 165 1.02e-37 136
Msa1360940 AT1G32870.3 50.000 158 69 5 7 159 46 198 1.25e-37 140
Msa1360940 AT5G04395.1 41.060 151 70 3 3 135 24 173 3.91e-33 120
Msa1360940 AT2G33480.3 56.436 101 40 2 59 158 7 104 1.22e-32 120
Msa1360940 AT5G61430.2 51.261 119 56 2 55 172 1 118 1.53e-32 121
Msa1360940 AT5G22380.1 39.286 168 93 4 6 165 4 170 3.31e-32 119
Msa1360940 AT3G44350.2 38.323 167 94 5 6 165 4 168 4.12e-32 119
Msa1360940 AT4G10350.2 49.573 117 55 2 54 169 12 125 1.94e-31 119
Msa1360940 AT1G56010.1 50.000 104 51 1 55 157 1 104 2.75e-29 112
Msa1360940 AT3G44350.1 40.909 132 71 3 6 130 4 135 5.03e-29 108
Msa1360940 AT5G64530.1 36.416 173 84 4 5 163 1 161 9.73e-29 108
Msa1360940 AT4G28530.2 38.462 169 45 3 6 157 9 135 1.38e-28 112
Msa1360940 AT3G12977.2 50.000 98 46 2 61 157 19 114 8.82e-28 107
Msa1360940 AT4G01520.1 32.231 242 141 10 8 235 5 237 1.21e-27 108
Msa1360940 AT4G01550.1 42.308 130 68 3 10 132 7 136 1.30e-27 111
Msa1360940 AT5G64530.2 42.424 132 61 3 5 133 1 120 1.40e-27 105
Msa1360940 AT4G01540.4 36.842 171 91 7 10 172 7 168 8.79e-26 105
Msa1360940 AT4G01540.3 35.263 190 106 7 10 191 7 187 9.55e-26 105
Msa1360940 AT4G01540.2 32.743 226 132 9 10 224 7 223 1.35e-25 105
Msa1360940 AT4G01540.1 39.216 153 77 6 10 154 7 151 1.64e-25 105
Msa1360940 AT3G04420.2 43.077 130 69 3 5 129 1 130 5.68e-25 101
Msa1360940 AT3G04420.1 43.077 130 69 3 5 129 1 130 1.57e-24 101
Msa1360940 AT2G43000.2 48.889 90 43 2 69 157 2 89 3.05e-23 94.7
Msa1360940 AT1G02230.1 39.259 135 71 4 8 134 4 135 4.71e-23 97.8
Msa1360940 AT1G02220.1 35.366 164 90 5 5 163 1 153 2.34e-21 93.2
Msa1360940 AT5G14000.1 33.333 162 97 5 1 159 9 162 1.32e-20 87.8
Msa1360940 AT5G14000.2 34.899 149 92 3 1 146 9 155 1.39e-20 86.7
Msa1360940 AT3G10490.4 51.899 79 35 2 80 157 2 78 2.37e-20 90.1
Msa1360940 AT3G10490.3 51.899 79 35 2 80 157 2 78 2.37e-20 90.1
Msa1360940 AT1G02250.1 40.769 130 66 4 8 129 4 130 2.86e-20 89.7
Msa1360940 AT3G56530.1 34.395 157 92 5 4 155 49 199 3.01e-18 83.6
Msa1360940 AT1G01010.1 36.957 138 72 5 5 129 1 136 8.69e-18 83.2
Msa1360940 AT2G18060.2 43.373 83 41 2 85 166 2 79 5.93e-16 76.6
Msa1360940 AT3G55210.1 32.335 167 85 7 7 155 11 167 1.05e-15 75.9
Msa1360940 AT5G50820.1 34.058 138 70 5 5 133 15 140 1.21e-14 71.2
Msa1360940 AT3G04430.1 34.351 131 71 5 13 129 6 135 6.35e-13 66.6
Msa1360940 AT3G56520.1 29.775 178 91 7 7 167 8 168 6.18e-12 63.5
Msa1360940 AT4G29230.1 31.169 154 76 6 7 133 48 198 4.63e-11 63.5
Msa1360940 AT4G29230.2 31.169 154 76 6 7 133 47 197 5.03e-11 63.5
Msa1360940 AT4G29230.3 31.169 154 76 6 7 133 48 198 5.40e-11 63.2
Msa1360940 AT5G22290.2 42.667 75 31 3 86 158 2 66 8.37e-11 61.2

Find 89 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAAGGAGTTAAAACTAAT+TGG 0.189428 tig0017277:-33546 Msa1360940:CDS
ACATGGACCATTTGGAATAT+TGG 0.279197 tig0017277:-32703 Msa1360940:three_prime_UTR
GAGCTGCTGGAAGTGGTTAT+TGG 0.288932 tig0017277:-33654 Msa1360940:CDS
GAACCAGCTTTCGCCGTTAC+AGG 0.306449 tig0017277:-32936 Msa1360940:CDS
ACTACATGGCCCATTAGATT+TGG 0.327623 tig0017277:+32571 None:intergenic
CTAGAGTCCGTGTGCAGCTT+TGG 0.329733 tig0017277:+33142 None:intergenic
AATACCATTCTTTCTCACTA+TGG 0.343467 tig0017277:+33725 None:intergenic
CGATTTGGCCGCGAACCATT+AGG 0.350658 tig0017277:+33676 None:intergenic
TTTGATCCATGGCAGCTTCC+AGG 0.350717 tig0017277:-33853 Msa1360940:intron
GATATTGACAATGACCCCTT+TGG 0.359679 tig0017277:-32977 Msa1360940:CDS
AGGTGTAGATCCAAATCTAA+TGG 0.367167 tig0017277:-32581 Msa1360940:three_prime_UTR
TTCTCTGTTCTAGAGTGATC+AGG 0.367936 tig0017277:-32744 Msa1360940:three_prime_UTR
CCACTTCCAGCAGCTCGATT+TGG 0.370452 tig0017277:+33661 None:intergenic
GAAGCCGATGGGGATTAAAA+AGG 0.375581 tig0017277:-33596 Msa1360940:CDS
TGATCAGGGAATTGTGGTTT+TGG 0.376771 tig0017277:-32729 Msa1360940:three_prime_UTR
ACCACGTACAGTGGTTAATT+AGG 0.382891 tig0017277:+32787 None:intergenic
ATCGGCTTCAATTTCCCAAT+TGG 0.383323 tig0017277:+33610 None:intergenic
TCACCCCACTGATGAAGAAT+TGG 0.389683 tig0017277:-33953 Msa1360940:CDS
ACGGCGAAAGCTGGTTCATT+TGG 0.397197 tig0017277:+32942 None:intergenic
CTGGTTCATTTGGTACTGAT+TGG 0.398001 tig0017277:+32952 None:intergenic
AAATCAACTTCTTTGACAAC+GGG 0.403446 tig0017277:+33883 None:intergenic
CAATTTGCAGCTTGATGATT+GGG 0.405128 tig0017277:-33335 Msa1360940:intron
TTTGGTTGACATGGACCATT+TGG 0.407509 tig0017277:-32711 Msa1360940:three_prime_UTR
GAACCCAAGTGGAATGATCT+TGG 0.409990 tig0017277:-33061 Msa1360940:CDS
TTAGGATACTTTCTGTCCCT+TGG 0.410126 tig0017277:+33694 None:intergenic
ACTGGAGCTGATAAACCAAT+TGG 0.421581 tig0017277:-33625 Msa1360940:CDS
CTGAAGTGTCCATGTACAAT+TGG 0.422519 tig0017277:+33173 None:intergenic
ATATTGACAATGACCCCTTT+GGG 0.425194 tig0017277:-32976 Msa1360940:CDS
AACCACTGTACGTGGTCACT+TGG 0.436160 tig0017277:-32780 Msa1360940:three_prime_UTR
ACAATTTGCAGCTTGATGAT+TGG 0.442736 tig0017277:-33336 Msa1360940:intron
TCCCTGTCACACGTGACATC+CGG 0.448143 tig0017277:+33094 None:intergenic
CACCGGATGTCACGTGTGAC+AGG 0.448239 tig0017277:-33096 Msa1360940:CDS
TGTAGAATTTACAACAAGAA+AGG 0.459071 tig0017277:-33307 Msa1360940:CDS
TCGCGGCCAAATCGAGCTGC+TGG 0.461608 tig0017277:-33667 Msa1360940:CDS
TGGTACTGATTGGTCCCAAA+GGG 0.477409 tig0017277:+32962 None:intergenic
CAAATCAACTTCTTTGACAA+CGG 0.479813 tig0017277:+33882 None:intergenic
GGTGTAGATCCAAATCTAAT+GGG 0.482415 tig0017277:-32580 Msa1360940:three_prime_UTR
AACCCAAGTGGAATGATCTT+GGG 0.485184 tig0017277:-33060 Msa1360940:CDS
AGTGGTTATTGGAAAGCTAC+TGG 0.486265 tig0017277:-33643 Msa1360940:CDS
CGGTGGGCACGTGGTTTCAC+CGG 0.486904 tig0017277:-33113 Msa1360940:CDS
CCAAATCGAGCTGCTGGAAG+TGG 0.489371 tig0017277:-33661 Msa1360940:CDS
ATTAGGTCCAATATTCCAAA+TGG 0.490522 tig0017277:+32696 None:intergenic
CACACGGACTCTAGCAGCTC+CGG 0.496485 tig0017277:-33133 Msa1360940:CDS
AGGGACAGAAAGTATCCTAA+TGG 0.497448 tig0017277:-33691 Msa1360940:CDS
GCCATGTAGTGTTCTGTAGC+TGG 0.507851 tig0017277:-32558 Msa1360940:three_prime_UTR
CTAGAGTGATCAGGGAATTG+TGG 0.509713 tig0017277:-32735 Msa1360940:three_prime_UTR
TTCACCAATTCTTCATCAGT+GGG 0.514077 tig0017277:+33949 None:intergenic
TAAGTACCTGGAAGCTGCCA+TGG 0.514238 tig0017277:+33847 None:intergenic
CTGGAGCTGATAAACCAATT+GGG 0.521189 tig0017277:-33624 Msa1360940:CDS
GCCAACGTTGATAGATCAGC+CGG 0.527376 tig0017277:-33502 Msa1360940:CDS
GTTACCATAGTGAGAAAGAA+TGG 0.534616 tig0017277:-33729 Msa1360940:CDS
TGTCCTGTAACGGCGAAAGC+TGG 0.540291 tig0017277:+32933 None:intergenic
TACTTGTGTCGCAAATGTGC+TGG 0.543753 tig0017277:-33922 Msa1360940:CDS
AATTGGGAAATTGAAGCCGA+TGG 0.549113 tig0017277:-33608 Msa1360940:CDS
GAATGATCTTGGGATACAGC+TGG 0.555420 tig0017277:-33050 Msa1360940:CDS
TCTCTGTTCTAGAGTGATCA+GGG 0.560529 tig0017277:-32743 Msa1360940:three_prime_UTR
GGGGAATTACCAATTGTACA+TGG 0.561485 tig0017277:-33182 Msa1360940:CDS
ATTGGGAAATTGAAGCCGAT+GGG 0.565472 tig0017277:-33607 Msa1360940:CDS
TAGCAGCTCCGGTGGGCACG+TGG 0.567396 tig0017277:-33122 Msa1360940:CDS
CGGTGAAACCACGTGCCCAC+CGG 0.571354 tig0017277:+33114 None:intergenic
ATTCACCAATTCTTCATCAG+TGG 0.576758 tig0017277:+33948 None:intergenic
ACCAGCTACAGAACACTACA+TGG 0.581418 tig0017277:+32557 None:intergenic
GAAAGTATCCTAATGGTTCG+CGG 0.583925 tig0017277:-33684 Msa1360940:CDS
TATCCCAAGATCATTCCACT+TGG 0.585732 tig0017277:+33057 None:intergenic
TTGGTACTGATTGGTCCCAA+AGG 0.586250 tig0017277:+32961 None:intergenic
ACGGACTCTAGCAGCTCCGG+TGG 0.587299 tig0017277:-33130 Msa1360940:CDS
ATTTGTATAAGTTTGATCCA+TGG 0.588059 tig0017277:-33864 Msa1360940:CDS
TACATGAACATGTCCTGTAA+CGG 0.591002 tig0017277:+32923 None:intergenic
ACCACTGTACGTGGTCACTT+GGG 0.592892 tig0017277:-32779 Msa1360940:three_prime_UTR
ACACAAGAAACAAGAATGCA+AGG 0.604942 tig0017277:-34006 Msa1360940:exon
TCCGGCTGATCTATCAACGT+TGG 0.609930 tig0017277:+33501 None:intergenic
AAGGCGTTAGTATTCTATGC+CGG 0.611791 tig0017277:-33577 Msa1360940:CDS
TTCAGTTCCAAAGCTGCACA+CGG 0.613734 tig0017277:-33149 Msa1360940:CDS
ATCCCAAGATCATTCCACTT+GGG 0.616788 tig0017277:+33058 None:intergenic
ACCGGATGTCACGTGTGACA+GGG 0.625552 tig0017277:-33095 Msa1360940:CDS
ACCTAATTAACCACTGTACG+TGG 0.628958 tig0017277:-32788 Msa1360940:three_prime_UTR
GTGGGGTGAAATCTGAAACC+AGG 0.631314 tig0017277:+33967 None:intergenic
TTGGGAAATTGAAGCCGATG+GGG 0.639522 tig0017277:-33606 Msa1360940:CDS
ACCCAAGTGACCACGTACAG+TGG 0.646480 tig0017277:+32778 None:intergenic
CAACACTAGTAACACACCAA+AGG 0.649514 tig0017277:-33269 Msa1360940:CDS
AGATTTGGATCTACACCTAG+TGG 0.652487 tig0017277:+32586 None:intergenic
AGGATTATCTTATCTCCACT+AGG 0.657020 tig0017277:-32601 Msa1360940:three_prime_UTR
GGTGAATTAGAATTACCACC+TGG 0.666365 tig0017277:-33985 Msa1360940:CDS
CGGACTCTAGCAGCTCCGGT+GGG 0.679476 tig0017277:-33129 Msa1360940:CDS
AGGTACAGAGTGAACCCAAG+TGG 0.680551 tig0017277:-33072 Msa1360940:CDS
GGTACTGATTGGTCCCAAAG+GGG 0.684157 tig0017277:+32963 None:intergenic
TCACCAATTCTTCATCAGTG+GGG 0.710619 tig0017277:+33950 None:intergenic
GGATGTCACGTGTGACAGGG+AGG 0.722201 tig0017277:-33092 Msa1360940:CDS
GGGTGAAATCTGAAACCAGG+TGG 0.741808 tig0017277:+33970 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATAAAATTTGACTA+AGG + tig0017277:32857-32876 None:intergenic 10.0%
!! AAAATAATAAAATTTGACTA+AGG + tig0017277:32857-32876 None:intergenic 10.0%
!! ATAATTATTCATTTGCAATT+GGG + tig0017277:32884-32903 None:intergenic 15.0%
!! AATAATTATTCATTTGCAAT+TGG + tig0017277:32885-32904 None:intergenic 15.0%
!!! TTTTTTCTTCAGATTATTAT+TGG - tig0017277:33238-33257 Msa1360940:CDS 15.0%
!!! TGAAAGAAAAAAAGATTTTT+TGG - tig0017277:33791-33810 Msa1360940:intron 15.0%
!!! AAAAAAAGATTTTTTGGAAA+GGG - tig0017277:33797-33816 Msa1360940:intron 15.0%
!! CTACAAAAAATTAACTAATT+AGG + tig0017277:33837-33856 None:intergenic 15.0%
!!! CTAATTAGTTAATTTTTTGT+AGG - tig0017277:33835-33854 Msa1360940:intron 15.0%
!! ATAATTATTCATTTGCAATT+GGG + tig0017277:32884-32903 None:intergenic 15.0%
!! AATAATTATTCATTTGCAAT+TGG + tig0017277:32885-32904 None:intergenic 15.0%
!!! TTTTTTCTTCAGATTATTAT+TGG - tig0017277:33238-33257 Msa1360940:CDS 15.0%
!!! TGAAAGAAAAAAAGATTTTT+TGG - tig0017277:33791-33810 Msa1360940:intron 15.0%
!!! AAAAAAAGATTTTTTGGAAA+GGG - tig0017277:33797-33816 Msa1360940:intron 15.0%
!! CTACAAAAAATTAACTAATT+AGG + tig0017277:33837-33856 None:intergenic 15.0%
!!! CTAATTAGTTAATTTTTTGT+AGG - tig0017277:33835-33854 Msa1360940:intron 15.0%
!! TTTATTTATGTTTGCAGAAA+TGG - tig0017277:32910-32929 Msa1360940:CDS 20.0%
!! TTATTTATGTTTGCAGAAAT+GGG - tig0017277:32911-32930 Msa1360940:CDS 20.0%
!!! TCATAATAATTTTGAACCTT+TGG + tig0017277:33412-33431 None:intergenic 20.0%
!! TTCAAAAAGAAGAATCAAAA+TGG + tig0017277:33775-33794 None:intergenic 20.0%
!!! GAAAAAAAGATTTTTTGGAA+AGG - tig0017277:33796-33815 Msa1360940:intron 20.0%
!! TAAAAAAACAAATAAGCAGT+AGG - tig0017277:34041-34060 Msa1360940:five_prime_UTR 20.0%
!! TTTATTTATGTTTGCAGAAA+TGG - tig0017277:32910-32929 Msa1360940:CDS 20.0%
!! TTATTTATGTTTGCAGAAAT+GGG - tig0017277:32911-32930 Msa1360940:CDS 20.0%
!!! TCATAATAATTTTGAACCTT+TGG + tig0017277:33412-33431 None:intergenic 20.0%
!! TTCAAAAAGAAGAATCAAAA+TGG + tig0017277:33775-33794 None:intergenic 20.0%
!!! GAAAAAAAGATTTTTTGGAA+AGG - tig0017277:33796-33815 Msa1360940:intron 20.0%
!! TAAAAAAACAAATAAGCAGT+AGG - tig0017277:34041-34060 Msa1360940:five_prime_UTR 20.0%
!! TATGTTCTGTTTTGTAAGTT+TGG + tig0017277:32525-32544 None:intergenic 25.0%
! ATTTGTATAAGTTTGATCCA+TGG - tig0017277:32798-32817 Msa1360940:three_prime_UTR 25.0%
!!! AATTAGTTTTAACTCCTTTG+GGG + tig0017277:33117-33136 None:intergenic 25.0%
!!! CAATTAGTTTTAACTCCTTT+GGG + tig0017277:33118-33137 None:intergenic 25.0%
! GTTAATGCTTCATACAAAAA+TGG - tig0017277:33279-33298 Msa1360940:CDS 25.0%
!! AAAATGGATTTATCTGATTG+TGG - tig0017277:33295-33314 Msa1360940:CDS 25.0%
! TGTAGAATTTACAACAAGAA+AGG - tig0017277:33355-33374 Msa1360940:intron 25.0%
! AAGCCAGAAATTCAAAAATT+GGG - tig0017277:33460-33479 Msa1360940:intron 25.0%
!!! ATTTTTTGGAAAGGGATATT+GGG - tig0017277:33805-33824 Msa1360940:intron 25.0%
! AAAAAGAGATGAATTCTAGA+AGG - tig0017277:33995-34014 Msa1360940:exon 25.0%
!! TATGTTCTGTTTTGTAAGTT+TGG + tig0017277:32525-32544 None:intergenic 25.0%
! ATTTGTATAAGTTTGATCCA+TGG - tig0017277:32798-32817 Msa1360940:three_prime_UTR 25.0%
!!! AATTAGTTTTAACTCCTTTG+GGG + tig0017277:33117-33136 None:intergenic 25.0%
!!! CAATTAGTTTTAACTCCTTT+GGG + tig0017277:33118-33137 None:intergenic 25.0%
! GTTAATGCTTCATACAAAAA+TGG - tig0017277:33279-33298 Msa1360940:CDS 25.0%
!! AAAATGGATTTATCTGATTG+TGG - tig0017277:33295-33314 Msa1360940:CDS 25.0%
! TGTAGAATTTACAACAAGAA+AGG - tig0017277:33355-33374 Msa1360940:intron 25.0%
! AAGCCAGAAATTCAAAAATT+GGG - tig0017277:33460-33479 Msa1360940:intron 25.0%
!!! ATTTTTTGGAAAGGGATATT+GGG - tig0017277:33805-33824 Msa1360940:intron 25.0%
! AAAAAGAGATGAATTCTAGA+AGG - tig0017277:33995-34014 Msa1360940:exon 25.0%
AAATCAACTTCTTTGACAAC+GGG + tig0017277:32782-32801 None:intergenic 30.0%
CAAATCAACTTCTTTGACAA+CGG + tig0017277:32783-32802 None:intergenic 30.0%
ATTATTCATTTGCAATTGGG+AGG + tig0017277:32881-32900 None:intergenic 30.0%
AATACCATTCTTTCTCACTA+TGG + tig0017277:32940-32959 None:intergenic 30.0%
!!! AATGGTATTTTTTCTCTCCA+AGG - tig0017277:32951-32970 Msa1360940:CDS 30.0%
!!! ATGGTATTTTTTCTCTCCAA+GGG - tig0017277:32952-32971 Msa1360940:CDS 30.0%
!!! ATTAGTTTTAACTCCTTTGG+GGG + tig0017277:33116-33135 None:intergenic 30.0%
!!! CCAATTAGTTTTAACTCCTT+TGG + tig0017277:33119-33138 None:intergenic 30.0%
CCAAAGGAGTTAAAACTAAT+TGG - tig0017277:33116-33135 Msa1360940:CDS 30.0%
GAAGCCAGAAATTCAAAAAT+TGG - tig0017277:33459-33478 Msa1360940:intron 30.0%
AGCCAGAAATTCAAAAATTG+GGG - tig0017277:33461-33480 Msa1360940:intron 30.0%
! TTCCCCAATTTTTGAATTTC+TGG + tig0017277:33466-33485 None:intergenic 30.0%
! TGATTTTCAGCTCAATTACT+TGG - tig0017277:33645-33664 Msa1360940:CDS 30.0%
! AGAATCAAAATGGCTTTTGT+GGG + tig0017277:33765-33784 None:intergenic 30.0%
! AAGAATCAAAATGGCTTTTG+TGG + tig0017277:33766-33785 None:intergenic 30.0%
!!! GATTTTTTGGAAAGGGATAT+TGG - tig0017277:33804-33823 Msa1360940:intron 30.0%
!!! TTTTTTGGAAAGGGATATTG+GGG - tig0017277:33806-33825 Msa1360940:intron 30.0%
ATTAGGTCCAATATTCCAAA+TGG + tig0017277:33969-33988 None:intergenic 30.0%
! CATCTCTTTTTGCACAAATT+AGG + tig0017277:33986-34005 None:intergenic 30.0%
AAATCAACTTCTTTGACAAC+GGG + tig0017277:32782-32801 None:intergenic 30.0%
CAAATCAACTTCTTTGACAA+CGG + tig0017277:32783-32802 None:intergenic 30.0%
ATTATTCATTTGCAATTGGG+AGG + tig0017277:32881-32900 None:intergenic 30.0%
AATACCATTCTTTCTCACTA+TGG + tig0017277:32940-32959 None:intergenic 30.0%
!!! AATGGTATTTTTTCTCTCCA+AGG - tig0017277:32951-32970 Msa1360940:CDS 30.0%
!!! ATGGTATTTTTTCTCTCCAA+GGG - tig0017277:32952-32971 Msa1360940:CDS 30.0%
!!! ATTAGTTTTAACTCCTTTGG+GGG + tig0017277:33116-33135 None:intergenic 30.0%
!!! CCAATTAGTTTTAACTCCTT+TGG + tig0017277:33119-33138 None:intergenic 30.0%
CCAAAGGAGTTAAAACTAAT+TGG - tig0017277:33116-33135 Msa1360940:CDS 30.0%
GAAGCCAGAAATTCAAAAAT+TGG - tig0017277:33459-33478 Msa1360940:intron 30.0%
AGCCAGAAATTCAAAAATTG+GGG - tig0017277:33461-33480 Msa1360940:intron 30.0%
! TTCCCCAATTTTTGAATTTC+TGG + tig0017277:33466-33485 None:intergenic 30.0%
! TGATTTTCAGCTCAATTACT+TGG - tig0017277:33645-33664 Msa1360940:CDS 30.0%
! AGAATCAAAATGGCTTTTGT+GGG + tig0017277:33765-33784 None:intergenic 30.0%
! AAGAATCAAAATGGCTTTTG+TGG + tig0017277:33766-33785 None:intergenic 30.0%
!!! GATTTTTTGGAAAGGGATAT+TGG - tig0017277:33804-33823 Msa1360940:intron 30.0%
!!! TTTTTTGGAAAGGGATATTG+GGG - tig0017277:33806-33825 Msa1360940:intron 30.0%
ATTAGGTCCAATATTCCAAA+TGG + tig0017277:33969-33988 None:intergenic 30.0%
! CATCTCTTTTTGCACAAATT+AGG + tig0017277:33986-34005 None:intergenic 30.0%
ACACAAGAAACAAGAATGCA+AGG - tig0017277:32656-32675 Msa1360940:three_prime_UTR 35.0%
TTCACCAATTCTTCATCAGT+GGG + tig0017277:32716-32735 None:intergenic 35.0%
ATTCACCAATTCTTCATCAG+TGG + tig0017277:32717-32736 None:intergenic 35.0%
! TTCTAGCTAGATTAAGTACC+TGG + tig0017277:32830-32849 None:intergenic 35.0%
GTTACCATAGTGAGAAAGAA+TGG - tig0017277:32933-32952 Msa1360940:CDS 35.0%
!!! CCTCAAGTTGTTTTTCTTTC+CGG + tig0017277:33182-33201 None:intergenic 35.0%
CGGAAAGAAAAACAACTTGA+GGG - tig0017277:33180-33199 Msa1360940:CDS 35.0%
! AAACAACTTGAGGGTATGTT+TGG - tig0017277:33189-33208 Msa1360940:CDS 35.0%
! ACAATTTGCAGCTTGATGAT+TGG - tig0017277:33326-33345 Msa1360940:CDS 35.0%
! CAATTTGCAGCTTGATGATT+GGG - tig0017277:33327-33346 Msa1360940:CDS 35.0%
ATATTGACAATGACCCCTTT+GGG - tig0017277:33686-33705 Msa1360940:CDS 35.0%
TACATGAACATGTCCTGTAA+CGG + tig0017277:33742-33761 None:intergenic 35.0%
!! TTTTTGGAAAGGGATATTGG+GGG - tig0017277:33807-33826 Msa1360940:intron 35.0%
!!! AATTGTGGTTTTGGTTGACA+TGG - tig0017277:33942-33961 Msa1360940:CDS 35.0%
! ACATGGACCATTTGGAATAT+TGG - tig0017277:33959-33978 Msa1360940:CDS 35.0%
AGGATTATCTTATCTCCACT+AGG - tig0017277:34061-34080 Msa1360940:five_prime_UTR 35.0%
AGGTGTAGATCCAAATCTAA+TGG - tig0017277:34081-34100 Msa1360940:five_prime_UTR 35.0%
GGTGTAGATCCAAATCTAAT+GGG - tig0017277:34082-34101 Msa1360940:five_prime_UTR 35.0%
ACACAAGAAACAAGAATGCA+AGG - tig0017277:32656-32675 Msa1360940:three_prime_UTR 35.0%
TTCACCAATTCTTCATCAGT+GGG + tig0017277:32716-32735 None:intergenic 35.0%
ATTCACCAATTCTTCATCAG+TGG + tig0017277:32717-32736 None:intergenic 35.0%
! TTCTAGCTAGATTAAGTACC+TGG + tig0017277:32830-32849 None:intergenic 35.0%
GTTACCATAGTGAGAAAGAA+TGG - tig0017277:32933-32952 Msa1360940:CDS 35.0%
!!! CCTCAAGTTGTTTTTCTTTC+CGG + tig0017277:33182-33201 None:intergenic 35.0%
CGGAAAGAAAAACAACTTGA+GGG - tig0017277:33180-33199 Msa1360940:CDS 35.0%
! AAACAACTTGAGGGTATGTT+TGG - tig0017277:33189-33208 Msa1360940:CDS 35.0%
! ACAATTTGCAGCTTGATGAT+TGG - tig0017277:33326-33345 Msa1360940:CDS 35.0%
! CAATTTGCAGCTTGATGATT+GGG - tig0017277:33327-33346 Msa1360940:CDS 35.0%
ATATTGACAATGACCCCTTT+GGG - tig0017277:33686-33705 Msa1360940:CDS 35.0%
TACATGAACATGTCCTGTAA+CGG + tig0017277:33742-33761 None:intergenic 35.0%
!! TTTTTGGAAAGGGATATTGG+GGG - tig0017277:33807-33826 Msa1360940:intron 35.0%
!!! AATTGTGGTTTTGGTTGACA+TGG - tig0017277:33942-33961 Msa1360940:CDS 35.0%
! ACATGGACCATTTGGAATAT+TGG - tig0017277:33959-33978 Msa1360940:CDS 35.0%
AGGATTATCTTATCTCCACT+AGG - tig0017277:34061-34080 Msa1360940:five_prime_UTR 35.0%
AGGTGTAGATCCAAATCTAA+TGG - tig0017277:34081-34100 Msa1360940:five_prime_UTR 35.0%
GGTGTAGATCCAAATCTAAT+GGG - tig0017277:34082-34101 Msa1360940:five_prime_UTR 35.0%
GGTGAATTAGAATTACCACC+TGG - tig0017277:32677-32696 Msa1360940:three_prime_UTR 40.0%
TCACCAATTCTTCATCAGTG+GGG + tig0017277:32715-32734 None:intergenic 40.0%
TTAGGATACTTTCTGTCCCT+TGG + tig0017277:32971-32990 None:intergenic 40.0%
!! AGGGACAGAAAGTATCCTAA+TGG - tig0017277:32971-32990 Msa1360940:CDS 40.0%
!! GAAAGTATCCTAATGGTTCG+CGG - tig0017277:32978-32997 Msa1360940:CDS 40.0%
AGTGGTTATTGGAAAGCTAC+TGG - tig0017277:33019-33038 Msa1360940:CDS 40.0%
ACTGGAGCTGATAAACCAAT+TGG - tig0017277:33037-33056 Msa1360940:CDS 40.0%
CTGGAGCTGATAAACCAATT+GGG - tig0017277:33038-33057 Msa1360940:CDS 40.0%
! ATCGGCTTCAATTTCCCAAT+TGG + tig0017277:33055-33074 None:intergenic 40.0%
AATTGGGAAATTGAAGCCGA+TGG - tig0017277:33054-33073 Msa1360940:CDS 40.0%
ATTGGGAAATTGAAGCCGAT+GGG - tig0017277:33055-33074 Msa1360940:CDS 40.0%
! AACGCCTTTTTAATCCCCAT+CGG + tig0017277:33073-33092 None:intergenic 40.0%
! AAGGCGTTAGTATTCTATGC+CGG - tig0017277:33085-33104 Msa1360940:CDS 40.0%
CCGGAAAGAAAAACAACTTG+AGG - tig0017277:33179-33198 Msa1360940:CDS 40.0%
CAACACTAGTAACACACCAA+AGG - tig0017277:33393-33412 Msa1360940:intron 40.0%
GGGGAATTACCAATTGTACA+TGG - tig0017277:33480-33499 Msa1360940:intron 40.0%
! CTGAAGTGTCCATGTACAAT+TGG + tig0017277:33492-33511 None:intergenic 40.0%
AACCCAAGTGGAATGATCTT+GGG - tig0017277:33602-33621 Msa1360940:CDS 40.0%
ATCCCAAGATCATTCCACTT+GGG + tig0017277:33607-33626 None:intergenic 40.0%
TATCCCAAGATCATTCCACT+TGG + tig0017277:33608-33627 None:intergenic 40.0%
GATATTGACAATGACCCCTT+TGG - tig0017277:33685-33704 Msa1360940:CDS 40.0%
!! CTGGTTCATTTGGTACTGAT+TGG + tig0017277:33713-33732 None:intergenic 40.0%
!! TTTTGGAAAGGGATATTGGG+GGG - tig0017277:33808-33827 Msa1360940:intron 40.0%
ACCTAATTAACCACTGTACG+TGG - tig0017277:33874-33893 Msa1360940:CDS 40.0%
ACCACGTACAGTGGTTAATT+AGG + tig0017277:33878-33897 None:intergenic 40.0%
!! TTCTCTGTTCTAGAGTGATC+AGG - tig0017277:33918-33937 Msa1360940:CDS 40.0%
!! TCTCTGTTCTAGAGTGATCA+GGG - tig0017277:33919-33938 Msa1360940:CDS 40.0%
! TGATCAGGGAATTGTGGTTT+TGG - tig0017277:33933-33952 Msa1360940:CDS 40.0%
TTTGGTTGACATGGACCATT+TGG - tig0017277:33951-33970 Msa1360940:CDS 40.0%
AGATTTGGATCTACACCTAG+TGG + tig0017277:34079-34098 None:intergenic 40.0%
ACTACATGGCCCATTAGATT+TGG + tig0017277:34094-34113 None:intergenic 40.0%
GGTGAATTAGAATTACCACC+TGG - tig0017277:32677-32696 Msa1360940:three_prime_UTR 40.0%
TCACCAATTCTTCATCAGTG+GGG + tig0017277:32715-32734 None:intergenic 40.0%
TTAGGATACTTTCTGTCCCT+TGG + tig0017277:32971-32990 None:intergenic 40.0%
!! AGGGACAGAAAGTATCCTAA+TGG - tig0017277:32971-32990 Msa1360940:CDS 40.0%
!! GAAAGTATCCTAATGGTTCG+CGG - tig0017277:32978-32997 Msa1360940:CDS 40.0%
AGTGGTTATTGGAAAGCTAC+TGG - tig0017277:33019-33038 Msa1360940:CDS 40.0%
ACTGGAGCTGATAAACCAAT+TGG - tig0017277:33037-33056 Msa1360940:CDS 40.0%
CTGGAGCTGATAAACCAATT+GGG - tig0017277:33038-33057 Msa1360940:CDS 40.0%
! ATCGGCTTCAATTTCCCAAT+TGG + tig0017277:33055-33074 None:intergenic 40.0%
AATTGGGAAATTGAAGCCGA+TGG - tig0017277:33054-33073 Msa1360940:CDS 40.0%
ATTGGGAAATTGAAGCCGAT+GGG - tig0017277:33055-33074 Msa1360940:CDS 40.0%
! AACGCCTTTTTAATCCCCAT+CGG + tig0017277:33073-33092 None:intergenic 40.0%
! AAGGCGTTAGTATTCTATGC+CGG - tig0017277:33085-33104 Msa1360940:CDS 40.0%
CCGGAAAGAAAAACAACTTG+AGG - tig0017277:33179-33198 Msa1360940:CDS 40.0%
CAACACTAGTAACACACCAA+AGG - tig0017277:33393-33412 Msa1360940:intron 40.0%
GGGGAATTACCAATTGTACA+TGG - tig0017277:33480-33499 Msa1360940:intron 40.0%
! CTGAAGTGTCCATGTACAAT+TGG + tig0017277:33492-33511 None:intergenic 40.0%
AACCCAAGTGGAATGATCTT+GGG - tig0017277:33602-33621 Msa1360940:CDS 40.0%
ATCCCAAGATCATTCCACTT+GGG + tig0017277:33607-33626 None:intergenic 40.0%
TATCCCAAGATCATTCCACT+TGG + tig0017277:33608-33627 None:intergenic 40.0%
GATATTGACAATGACCCCTT+TGG - tig0017277:33685-33704 Msa1360940:CDS 40.0%
!! CTGGTTCATTTGGTACTGAT+TGG + tig0017277:33713-33732 None:intergenic 40.0%
!! TTTTGGAAAGGGATATTGGG+GGG - tig0017277:33808-33827 Msa1360940:intron 40.0%
ACCTAATTAACCACTGTACG+TGG - tig0017277:33874-33893 Msa1360940:CDS 40.0%
ACCACGTACAGTGGTTAATT+AGG + tig0017277:33878-33897 None:intergenic 40.0%
!! TTCTCTGTTCTAGAGTGATC+AGG - tig0017277:33918-33937 Msa1360940:CDS 40.0%
!! TCTCTGTTCTAGAGTGATCA+GGG - tig0017277:33919-33938 Msa1360940:CDS 40.0%
! TGATCAGGGAATTGTGGTTT+TGG - tig0017277:33933-33952 Msa1360940:CDS 40.0%
TTTGGTTGACATGGACCATT+TGG - tig0017277:33951-33970 Msa1360940:CDS 40.0%
AGATTTGGATCTACACCTAG+TGG + tig0017277:34079-34098 None:intergenic 40.0%
ACTACATGGCCCATTAGATT+TGG + tig0017277:34094-34113 None:intergenic 40.0%
TCACCCCACTGATGAAGAAT+TGG - tig0017277:32709-32728 Msa1360940:three_prime_UTR 45.0%
TACTTGTGTCGCAAATGTGC+TGG - tig0017277:32740-32759 Msa1360940:three_prime_UTR 45.0%
TTGGGAAATTGAAGCCGATG+GGG - tig0017277:33056-33075 Msa1360940:CDS 45.0%
GAAGCCGATGGGGATTAAAA+AGG - tig0017277:33066-33085 Msa1360940:CDS 45.0%
TTCAGTTCCAAAGCTGCACA+CGG - tig0017277:33513-33532 Msa1360940:CDS 45.0%
GAACCCAAGTGGAATGATCT+TGG - tig0017277:33601-33620 Msa1360940:CDS 45.0%
GAATGATCTTGGGATACAGC+TGG - tig0017277:33612-33631 Msa1360940:CDS 45.0%
!! TGGTACTGATTGGTCCCAAA+GGG + tig0017277:33703-33722 None:intergenic 45.0%
!! TTGGTACTGATTGGTCCCAA+AGG + tig0017277:33704-33723 None:intergenic 45.0%
CTAGAGTGATCAGGGAATTG+TGG - tig0017277:33927-33946 Msa1360940:CDS 45.0%
ACCAGCTACAGAACACTACA+TGG + tig0017277:34108-34127 None:intergenic 45.0%
TCACCCCACTGATGAAGAAT+TGG - tig0017277:32709-32728 Msa1360940:three_prime_UTR 45.0%
TACTTGTGTCGCAAATGTGC+TGG - tig0017277:32740-32759 Msa1360940:three_prime_UTR 45.0%
TTGGGAAATTGAAGCCGATG+GGG - tig0017277:33056-33075 Msa1360940:CDS 45.0%
GAAGCCGATGGGGATTAAAA+AGG - tig0017277:33066-33085 Msa1360940:CDS 45.0%
TTCAGTTCCAAAGCTGCACA+CGG - tig0017277:33513-33532 Msa1360940:CDS 45.0%
GAACCCAAGTGGAATGATCT+TGG - tig0017277:33601-33620 Msa1360940:CDS 45.0%
GAATGATCTTGGGATACAGC+TGG - tig0017277:33612-33631 Msa1360940:CDS 45.0%
!! TGGTACTGATTGGTCCCAAA+GGG + tig0017277:33703-33722 None:intergenic 45.0%
!! TTGGTACTGATTGGTCCCAA+AGG + tig0017277:33704-33723 None:intergenic 45.0%
CTAGAGTGATCAGGGAATTG+TGG - tig0017277:33927-33946 Msa1360940:CDS 45.0%
ACCAGCTACAGAACACTACA+TGG + tig0017277:34108-34127 None:intergenic 45.0%
! GGGTGAAATCTGAAACCAGG+TGG + tig0017277:32695-32714 None:intergenic 50.0%
! GTGGGGTGAAATCTGAAACC+AGG + tig0017277:32698-32717 None:intergenic 50.0%
TTTGATCCATGGCAGCTTCC+AGG - tig0017277:32809-32828 Msa1360940:three_prime_UTR 50.0%
TAAGTACCTGGAAGCTGCCA+TGG + tig0017277:32818-32837 None:intergenic 50.0%
GAGCTGCTGGAAGTGGTTAT+TGG - tig0017277:33008-33027 Msa1360940:CDS 50.0%
! AACTCCTTTGGGGGCTTTAC+CGG + tig0017277:33107-33126 None:intergenic 50.0%
! GCCAACGTTGATAGATCAGC+CGG - tig0017277:33160-33179 Msa1360940:CDS 50.0%
TCCGGCTGATCTATCAACGT+TGG + tig0017277:33164-33183 None:intergenic 50.0%
AGGTACAGAGTGAACCCAAG+TGG - tig0017277:33590-33609 Msa1360940:CDS 50.0%
!! GGTACTGATTGGTCCCAAAG+GGG + tig0017277:33702-33721 None:intergenic 50.0%
! ACGGCGAAAGCTGGTTCATT+TGG + tig0017277:33723-33742 None:intergenic 50.0%
AACCACTGTACGTGGTCACT+TGG - tig0017277:33882-33901 Msa1360940:CDS 50.0%
ACCACTGTACGTGGTCACTT+GGG - tig0017277:33883-33902 Msa1360940:CDS 50.0%
GCCATGTAGTGTTCTGTAGC+TGG - tig0017277:34104-34123 Msa1360940:five_prime_UTR 50.0%
! GGGTGAAATCTGAAACCAGG+TGG + tig0017277:32695-32714 None:intergenic 50.0%
! GTGGGGTGAAATCTGAAACC+AGG + tig0017277:32698-32717 None:intergenic 50.0%
TTTGATCCATGGCAGCTTCC+AGG - tig0017277:32809-32828 Msa1360940:three_prime_UTR 50.0%
TAAGTACCTGGAAGCTGCCA+TGG + tig0017277:32818-32837 None:intergenic 50.0%
GAGCTGCTGGAAGTGGTTAT+TGG - tig0017277:33008-33027 Msa1360940:CDS 50.0%
! AACTCCTTTGGGGGCTTTAC+CGG + tig0017277:33107-33126 None:intergenic 50.0%
! GCCAACGTTGATAGATCAGC+CGG - tig0017277:33160-33179 Msa1360940:CDS 50.0%
TCCGGCTGATCTATCAACGT+TGG + tig0017277:33164-33183 None:intergenic 50.0%
AGGTACAGAGTGAACCCAAG+TGG - tig0017277:33590-33609 Msa1360940:CDS 50.0%
!! GGTACTGATTGGTCCCAAAG+GGG + tig0017277:33702-33721 None:intergenic 50.0%
! ACGGCGAAAGCTGGTTCATT+TGG + tig0017277:33723-33742 None:intergenic 50.0%
AACCACTGTACGTGGTCACT+TGG - tig0017277:33882-33901 Msa1360940:CDS 50.0%
ACCACTGTACGTGGTCACTT+GGG - tig0017277:33883-33902 Msa1360940:CDS 50.0%
GCCATGTAGTGTTCTGTAGC+TGG - tig0017277:34104-34123 Msa1360940:five_prime_UTR 50.0%
! CGATTTGGCCGCGAACCATT+AGG + tig0017277:32989-33008 None:intergenic 55.0%
CCACTTCCAGCAGCTCGATT+TGG + tig0017277:33004-33023 None:intergenic 55.0%
CCAAATCGAGCTGCTGGAAG+TGG - tig0017277:33001-33020 Msa1360940:CDS 55.0%
TATGCCGGTAAAGCCCCCAA+AGG - tig0017277:33100-33119 Msa1360940:CDS 55.0%
CTAGAGTCCGTGTGCAGCTT+TGG + tig0017277:33523-33542 None:intergenic 55.0%
ACCGGATGTCACGTGTGACA+GGG - tig0017277:33567-33586 Msa1360940:CDS 55.0%
TCCCTGTCACACGTGACATC+CGG + tig0017277:33571-33590 None:intergenic 55.0%
GAACCAGCTTTCGCCGTTAC+AGG - tig0017277:33726-33745 Msa1360940:CDS 55.0%
TGTCCTGTAACGGCGAAAGC+TGG + tig0017277:33732-33751 None:intergenic 55.0%
ACCCAAGTGACCACGTACAG+TGG + tig0017277:33887-33906 None:intergenic 55.0%
! CGATTTGGCCGCGAACCATT+AGG + tig0017277:32989-33008 None:intergenic 55.0%
CCACTTCCAGCAGCTCGATT+TGG + tig0017277:33004-33023 None:intergenic 55.0%
CCAAATCGAGCTGCTGGAAG+TGG - tig0017277:33001-33020 Msa1360940:CDS 55.0%
TATGCCGGTAAAGCCCCCAA+AGG - tig0017277:33100-33119 Msa1360940:CDS 55.0%
CTAGAGTCCGTGTGCAGCTT+TGG + tig0017277:33523-33542 None:intergenic 55.0%
ACCGGATGTCACGTGTGACA+GGG - tig0017277:33567-33586 Msa1360940:CDS 55.0%
TCCCTGTCACACGTGACATC+CGG + tig0017277:33571-33590 None:intergenic 55.0%
GAACCAGCTTTCGCCGTTAC+AGG - tig0017277:33726-33745 Msa1360940:CDS 55.0%
TGTCCTGTAACGGCGAAAGC+TGG + tig0017277:33732-33751 None:intergenic 55.0%
ACCCAAGTGACCACGTACAG+TGG + tig0017277:33887-33906 None:intergenic 55.0%
CACACGGACTCTAGCAGCTC+CGG - tig0017277:33529-33548 Msa1360940:CDS 60.0%
CACCGGATGTCACGTGTGAC+AGG - tig0017277:33566-33585 Msa1360940:CDS 60.0%
GGATGTCACGTGTGACAGGG+AGG - tig0017277:33570-33589 Msa1360940:CDS 60.0%
CACACGGACTCTAGCAGCTC+CGG - tig0017277:33529-33548 Msa1360940:CDS 60.0%
CACCGGATGTCACGTGTGAC+AGG - tig0017277:33566-33585 Msa1360940:CDS 60.0%
GGATGTCACGTGTGACAGGG+AGG - tig0017277:33570-33589 Msa1360940:CDS 60.0%
TCGCGGCCAAATCGAGCTGC+TGG - tig0017277:32995-33014 Msa1360940:CDS 65.0%
ACGGACTCTAGCAGCTCCGG+TGG - tig0017277:33532-33551 Msa1360940:CDS 65.0%
CGGACTCTAGCAGCTCCGGT+GGG - tig0017277:33533-33552 Msa1360940:CDS 65.0%
CGGTGAAACCACGTGCCCAC+CGG + tig0017277:33551-33570 None:intergenic 65.0%
CGGTGGGCACGTGGTTTCAC+CGG - tig0017277:33549-33568 Msa1360940:CDS 65.0%
TCGCGGCCAAATCGAGCTGC+TGG - tig0017277:32995-33014 Msa1360940:CDS 65.0%
ACGGACTCTAGCAGCTCCGG+TGG - tig0017277:33532-33551 Msa1360940:CDS 65.0%
CGGACTCTAGCAGCTCCGGT+GGG - tig0017277:33533-33552 Msa1360940:CDS 65.0%
CGGTGAAACCACGTGCCCAC+CGG + tig0017277:33551-33570 None:intergenic 65.0%
CGGTGGGCACGTGGTTTCAC+CGG - tig0017277:33549-33568 Msa1360940:CDS 65.0%
TAGCAGCTCCGGTGGGCACG+TGG - tig0017277:33540-33559 Msa1360940:CDS 70.0%
TAGCAGCTCCGGTGGGCACG+TGG - tig0017277:33540-33559 Msa1360940:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0017277 gene 32487 34197 32487 ID=Msa1360940;Name=Msa1360940
tig0017277 mRNA 32487 34197 32487 ID=Msa1360940-mRNA-1;Parent=Msa1360940;Name=Msa1360940-mRNA-1;_AED=0.07;_eAED=0.07;_QI=184|1|1|1|1|1|3|417|292
tig0017277 exon 32487 33347 32487 ID=Msa1360940-mRNA-1:exon:12186;Parent=Msa1360940-mRNA-1
tig0017277 exon 33483 33757 33483 ID=Msa1360940-mRNA-1:exon:12185;Parent=Msa1360940-mRNA-1
tig0017277 exon 33854 34197 33854 ID=Msa1360940-mRNA-1:exon:12184;Parent=Msa1360940-mRNA-1
tig0017277 five_prime_UTR 34014 34197 34014 ID=Msa1360940-mRNA-1:five_prime_utr;Parent=Msa1360940-mRNA-1
tig0017277 CDS 33854 34013 33854 ID=Msa1360940-mRNA-1:cds;Parent=Msa1360940-mRNA-1
tig0017277 CDS 33483 33757 33483 ID=Msa1360940-mRNA-1:cds;Parent=Msa1360940-mRNA-1
tig0017277 CDS 32904 33347 32904 ID=Msa1360940-mRNA-1:cds;Parent=Msa1360940-mRNA-1
tig0017277 three_prime_UTR 32487 32903 32487 ID=Msa1360940-mRNA-1:three_prime_utr;Parent=Msa1360940-mRNA-1
Gene Sequence

>Msa1360940

ATGCAAGGTGAATTAGAATTACCACCTGGTTTCAGATTTCACCCCACTGATGAAGAATTGGTGAATCATTACTTGTGTCGCAAATGTGCTGGTCAATCTATTTCTGTTCCCGTTGTCAAAGAAGTTGATTTGTATAAGTTTGATCCATGGCAGCTTCCAGAAATGGGTTACCATAGTGAGAAAGAATGGTATTTTTTCTCTCCAAGGGACAGAAAGTATCCTAATGGTTCGCGGCCAAATCGAGCTGCTGGAAGTGGTTATTGGAAAGCTACTGGAGCTGATAAACCAATTGGGAAATTGAAGCCGATGGGGATTAAAAAGGCGTTAGTATTCTATGCCGGTAAAGCCCCCAAAGGAGTTAAAACTAATTGGATTATGCACGAATATCGTCTTGCCAACGTTGATAGATCAGCCGGAAAGAAAAACAACTTGAGGCTTGATGATTGGGTGTTGTGTAGAATTTACAACAAGAAAGGCAAGATTGAGAAATTCAACACTAGTAACACACCAAAGGTTCAAAATTATTATGAACACGAAGAAGTAGAAGAACATGAGATGAAGCCAGAAATTCAAAAATTGGGGAATTACCAATTGTACATGGACACTTCAGATTCAGTTCCAAAGCTGCACACGGACTCTAGCAGCTCCGGTGGGCACGTGGTTTCACCGGATGTCACGTGTGACAGGGAGGTACAGAGTGAACCCAAGTGGAATGATCTTGGGATACAGCTGGATGACGCGTTTGATTTTCAGCTCAATTACTTGGAAAATGCTCTTTCATTTGATATTGACAATGACCCCTTTGGGACCAATCAGTACCAAATGAACCAGCTTTCGCCGTTACAGGACATGTTCATGTACCCACAAAAGCCATTTTGA
Protein sequence

>Msa1360940

MQGELELPPGFRFHPTDEELVNHYLCRKCAGQSISVPVVKEVDLYKFDPWQLPEMGYHSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKLKPMGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGKKNNLRLDDWVLCRIYNKKGKIEKFNTSNTPKVQNYYEHEEVEEHEMKPEIQKLGNYQLYMDTSDSVPKLHTDSSSSGGHVVSPDVTCDREVQSEPKWNDLGIQLDDAFDFQLNYLENALSFDIDNDPFGTNQYQMNQLSPLQDMFMYPQKPF*