AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0474050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474050 MtrunA17_Chr3g0130731 99.315 292 2 0 1 292 1 292 0.0 610
Msa0474050 MtrunA17_Chr8g0384721 70.847 295 65 8 1 287 1 282 1.08e-143 405
Msa0474050 MtrunA17_Chr3g0124761 62.215 307 82 9 1 292 1 288 2.66e-124 356
Msa0474050 MtrunA17_Chr2g0318081 44.912 285 133 5 3 276 12 283 3.73e-74 231
Msa0474050 MtrunA17_Chr2g0318101 67.284 162 42 3 7 157 15 176 3.98e-74 231
Msa0474050 MtrunA17_Chr8g0359921 67.683 164 45 3 4 163 11 170 2.04e-73 228
Msa0474050 MtrunA17_Chr4g0047841 60.317 189 44 4 7 171 15 196 5.00e-71 223
Msa0474050 MtrunA17_Chr5g0417791 50.926 216 99 5 5 214 1 215 7.50e-70 217
Msa0474050 MtrunA17_Chr7g0252971 56.989 186 68 3 4 178 5 189 3.58e-69 218
Msa0474050 MtrunA17_Chr4g0042561 63.226 155 55 2 6 158 8 162 6.45e-69 215
Msa0474050 MtrunA17_Chr2g0326361 60.645 155 57 2 7 157 14 168 8.21e-66 208
Msa0474050 MtrunA17_Chr7g0263931 56.790 162 66 2 2 159 6 167 3.59e-64 204
Msa0474050 MtrunA17_Chr2g0309891 44.351 239 114 7 5 228 4 238 1.91e-59 193
Msa0474050 MtrunA17_Chr6g0481091 54.487 156 65 3 7 159 6 158 5.10e-57 183
Msa0474050 MtrunA17_Chr6g0453131 50.909 165 73 2 6 162 14 178 1.69e-54 181
Msa0474050 MtrunA17_Chr5g0417001 52.229 157 67 2 9 157 16 172 3.34e-54 181
Msa0474050 MtrunA17_Chr6g0484441 54.601 163 64 3 4 163 2 157 1.12e-53 177
Msa0474050 MtrunA17_Chr5g0405211 49.133 173 71 4 7 167 8 175 1.91e-53 177
Msa0474050 MtrunA17_Chr8g0361731 48.824 170 78 3 9 169 16 185 2.86e-53 178
Msa0474050 MtrunA17_Chr4g0018391 48.824 170 76 4 7 170 7 171 3.39e-53 177
Msa0474050 MtrunA17_Chr6g0453451 52.866 157 72 2 4 159 17 172 3.53e-53 176
Msa0474050 MtrunA17_Chr4g0060931 49.432 176 75 3 4 172 14 182 3.76e-53 177
Msa0474050 MtrunA17_Chr4g0076731 53.595 153 64 2 9 159 56 203 1.02e-52 178
Msa0474050 MtrunA17_Chr5g0433781 49.457 184 79 5 5 177 4 184 1.22e-52 182
Msa0474050 MtrunA17_Chr3g0109821 46.829 205 96 5 5 206 4 198 1.48e-52 182
Msa0474050 MtrunA17_Chr8g0372121 49.375 160 72 3 7 162 6 160 1.92e-52 174
Msa0474050 MtrunA17_Chr2g0309331 50.932 161 69 3 3 158 6 161 2.05e-52 174
Msa0474050 MtrunA17_Chr5g0398971 49.682 157 70 3 7 158 7 159 1.32e-51 172
Msa0474050 MtrunA17_Chr5g0400461 51.786 168 65 4 3 160 2 163 2.21e-51 172
Msa0474050 MtrunA17_Chr4g0056541 48.780 164 74 4 7 165 7 165 5.98e-51 171
Msa0474050 MtrunA17_Chr3g0139331 50.000 164 74 3 4 164 8 166 6.23e-51 171
Msa0474050 MtrunA17_Chr4g0017921 52.564 156 64 3 7 158 8 157 8.34e-51 171
Msa0474050 MtrunA17_Chr3g0091921 42.424 231 97 5 4 227 13 214 8.84e-51 169
Msa0474050 MtrunA17_Chr2g0316971 53.896 154 67 2 7 157 23 175 1.14e-50 171
Msa0474050 MtrunA17_Chr8g0346001 40.196 204 112 4 1 194 9 212 4.52e-50 171
Msa0474050 MtrunA17_Chr7g0253011 50.000 164 76 2 5 163 15 177 1.17e-49 168
Msa0474050 MtrunA17_Chr1g0200561 49.068 161 73 3 1 157 13 168 1.32e-49 167
Msa0474050 MtrunA17_Chr6g0461661 49.398 166 80 2 5 167 16 180 3.66e-49 167
Msa0474050 MtrunA17_Chr7g0214071 54.088 159 62 3 3 158 11 161 4.60e-49 163
Msa0474050 MtrunA17_Chr1g0147421 48.235 170 79 4 4 169 24 188 6.76e-49 166
Msa0474050 MtrunA17_Chr1g0183741 50.625 160 66 4 7 162 10 160 1.16e-48 163
Msa0474050 MtrunA17_Chr5g0442771 36.996 273 130 7 9 248 20 283 1.22e-48 164
Msa0474050 MtrunA17_Chr5g0428991 46.500 200 90 5 7 194 25 219 4.54e-48 169
Msa0474050 MtrunA17_Chr4g0054791 48.276 174 80 4 1 168 1 170 2.24e-47 160
Msa0474050 MtrunA17_Chr7g0217721 45.763 177 83 3 4 167 16 192 4.79e-47 161
Msa0474050 MtrunA17_Chr7g0261411 50.000 154 65 3 7 156 10 155 5.33e-47 159
Msa0474050 MtrunA17_Chr2g0311651 40.265 226 117 7 1 210 15 238 2.26e-46 158
Msa0474050 MtrunA17_Chr2g0312321 39.764 254 123 10 4 231 8 257 2.91e-46 157
Msa0474050 MtrunA17_Chr7g0217711 52.113 142 64 2 4 144 16 154 5.79e-46 153
Msa0474050 MtrunA17_Chr3g0144271 50.633 158 72 3 2 155 18 173 4.00e-45 157
Msa0474050 MtrunA17_Chr3g0128151 45.745 188 79 7 7 179 22 201 9.39e-45 159
Msa0474050 MtrunA17_Chr2g0311661 48.466 163 70 5 9 157 23 185 1.07e-44 153
Msa0474050 MtrunA17_Chr8g0385991 45.714 175 84 5 3 170 10 180 7.39e-44 149
Msa0474050 MtrunA17_Chr4g0038751 41.530 183 83 3 9 187 17 179 9.19e-43 148
Msa0474050 MtrunA17_Chr3g0130101 46.753 154 76 3 9 159 9 159 1.07e-42 149
Msa0474050 MtrunA17_Chr1g0197351 48.408 157 75 3 7 157 42 198 1.38e-42 152
Msa0474050 MtrunA17_Chr1g0201021 48.052 154 74 3 9 159 21 171 2.59e-42 152
Msa0474050 MtrunA17_Chr3g0131911 47.590 166 73 4 3 158 10 171 5.71e-42 144
Msa0474050 MtrunA17_Chr8g0364791 43.949 157 82 3 6 159 5 158 2.40e-41 148
Msa0474050 MtrunA17_Chr3g0128111 46.452 155 69 6 10 157 45 192 2.94e-41 143
Msa0474050 MtrunA17_Chr8g0345671 50.968 155 61 6 6 154 10 155 1.65e-39 142
Msa0474050 MtrunA17_Chr1g0197361 46.154 156 76 5 9 160 10 161 1.95e-39 145
Msa0474050 MtrunA17_Chr3g0092671 48.077 156 73 5 9 160 7 158 2.39e-39 144
Msa0474050 MtrunA17_Chr8g0384201 42.675 157 84 4 6 159 5 158 6.62e-39 142
Msa0474050 MtrunA17_Chr4g0026141 34.413 247 135 6 7 232 5 245 1.15e-36 131
Msa0474050 MtrunA17_Chr7g0266701 34.483 232 127 8 7 223 4 225 7.96e-36 129
Msa0474050 MtrunA17_Chr2g0321631 34.298 242 142 8 8 237 5 241 1.93e-33 122
Msa0474050 MtrunA17_Chr2g0321741 38.674 181 89 7 27 195 12 182 1.77e-32 122
Msa0474050 MtrunA17_Chr8g0345691 42.857 154 73 5 7 154 12 156 1.97e-32 124
Msa0474050 MtrunA17_Chr4g0050701 40.764 157 79 3 7 157 11 159 8.38e-32 116
Msa0474050 MtrunA17_Chr3g0113001 49.573 117 58 1 52 167 10 126 5.81e-31 117
Msa0474050 MtrunA17_Chr8g0345711 46.512 129 62 4 7 129 12 139 1.50e-30 113
Msa0474050 MtrunA17_Chr8g0345731 46.269 134 64 4 7 132 24 157 1.51e-29 110
Msa0474050 MtrunA17_Chr8g0345721 38.037 163 65 4 10 137 38 199 1.15e-26 103
Msa0474050 MtrunA17_Chr8g0384351 37.349 166 82 5 2 167 5 148 1.77e-26 102
Msa0474050 MtrunA17_Chr8g0345701 39.597 149 67 6 1 129 1 146 1.97e-24 97.1
Msa0474050 MtrunA17_Chr3g0113031 51.648 91 42 2 70 158 3 93 8.50e-24 97.8
Msa0474050 MtrunA17_Chr7g0243371 57.333 75 29 1 60 131 17 91 2.64e-22 89.7
Msa0474050 MtrunA17_Chr8g0345741 41.935 124 65 4 18 135 2 124 5.03e-22 90.1
Msa0474050 MtrunA17_Chr7g0251661 30.872 149 96 4 3 147 6 151 2.13e-19 83.2
Msa0474050 MtrunA17_Chr3g0130321 30.303 165 99 4 1 155 1 159 2.63e-19 84.0
Msa0474050 MtrunA17_Chr7g0251651 32.836 134 83 4 5 134 16 146 1.03e-17 79.3
Msa0474050 MtrunA17_Chr7g0251671 29.730 148 97 4 4 147 7 151 1.01e-16 75.9
Msa0474050 MtrunA17_Chr3g0113011 50.000 54 26 1 1 53 12 65 2.65e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474050 AT1G01720.1 63.667 300 90 9 1 292 1 289 3.55e-124 356
Msa0474050 AT5G08790.1 66.409 259 59 8 1 252 1 238 2.32e-112 326
Msa0474050 AT5G63790.1 57.383 298 83 7 1 292 44 303 1.15e-106 313
Msa0474050 AT5G63790.2 57.383 298 83 7 1 292 54 313 1.52e-106 313
Msa0474050 AT1G77450.1 53.929 280 89 4 3 281 6 246 9.45e-99 290
Msa0474050 AT4G27410.2 70.323 155 42 2 4 157 11 162 9.65e-74 228
Msa0474050 AT3G15500.1 67.081 161 49 2 4 163 11 168 2.08e-73 228
Msa0474050 AT1G52890.1 67.081 161 49 2 4 163 11 168 4.39e-73 227
Msa0474050 AT1G61110.1 57.292 192 64 3 3 183 12 196 1.61e-70 221
Msa0474050 AT4G27410.3 63.372 172 42 3 4 157 11 179 2.91e-69 218
Msa0474050 AT1G69490.1 45.660 265 108 7 7 249 9 259 4.82e-69 215
Msa0474050 AT3G04070.1 52.358 212 70 4 7 192 10 216 2.03e-67 214
Msa0474050 AT3G04070.2 54.500 200 68 4 7 192 10 200 3.04e-67 213
Msa0474050 AT3G15510.1 66.667 159 40 4 11 157 21 178 1.40e-66 212
Msa0474050 AT1G52880.1 64.968 157 45 2 11 157 21 177 3.86e-62 199
Msa0474050 AT5G61430.1 52.941 170 78 2 4 172 13 181 2.05e-56 185
Msa0474050 AT5G07680.1 51.445 173 82 2 4 175 14 185 4.16e-55 181
Msa0474050 AT3G17730.1 51.534 163 73 4 7 166 6 165 4.92e-55 179
Msa0474050 AT5G07680.2 51.744 172 81 2 5 175 1 171 8.92e-55 180
Msa0474050 AT3G18400.1 54.037 161 69 2 4 163 2 158 1.03e-54 180
Msa0474050 AT5G39820.1 49.143 175 68 3 9 162 22 196 1.57e-54 180
Msa0474050 AT2G02450.1 54.248 153 63 2 9 159 53 200 2.67e-54 181
Msa0474050 AT2G02450.2 54.248 153 63 2 9 159 53 200 3.54e-54 181
Msa0474050 AT5G39610.1 54.321 162 60 3 5 159 18 172 4.68e-54 177
Msa0474050 AT2G33480.1 55.696 158 63 3 2 158 10 161 1.59e-53 176
Msa0474050 AT1G76420.1 53.416 161 68 3 2 159 17 173 2.20e-53 177
Msa0474050 AT2G33480.2 55.696 158 61 3 2 158 10 159 4.08e-53 174
Msa0474050 AT2G24430.2 51.220 164 73 2 4 164 13 172 4.13e-53 176
Msa0474050 AT2G24430.1 51.220 164 73 2 4 164 13 172 4.13e-53 176
Msa0474050 AT2G18060.3 49.390 164 74 3 7 166 9 167 4.76e-53 177
Msa0474050 AT2G18060.1 49.390 164 74 3 7 166 9 167 4.76e-53 177
Msa0474050 AT4G36160.1 51.923 156 66 3 7 158 10 160 9.55e-53 177
Msa0474050 AT4G36160.3 51.923 156 66 3 7 158 10 160 9.55e-53 177
Msa0474050 AT5G62380.2 49.133 173 79 3 1 169 1 168 9.98e-53 176
Msa0474050 AT5G62380.1 49.133 173 79 3 1 169 1 168 9.98e-53 176
Msa0474050 AT4G36160.2 51.923 156 66 3 7 158 14 164 1.01e-52 177
Msa0474050 AT5G17260.1 52.866 157 67 4 5 157 4 157 1.29e-52 179
Msa0474050 AT1G26870.1 51.250 160 69 2 7 157 16 175 1.53e-52 177
Msa0474050 AT1G54330.1 53.704 162 66 3 5 163 4 159 2.63e-52 173
Msa0474050 AT1G79580.3 49.701 167 73 3 3 164 13 173 4.79e-52 175
Msa0474050 AT1G79580.5 49.701 167 73 3 3 164 13 173 4.79e-52 175
Msa0474050 AT1G79580.4 49.701 167 73 3 3 164 13 173 4.79e-52 175
Msa0474050 AT1G79580.2 49.701 167 73 3 3 164 13 173 4.79e-52 175
Msa0474050 AT1G79580.1 49.701 167 73 3 3 164 13 173 4.79e-52 175
Msa0474050 AT2G43000.1 51.333 150 70 2 9 157 20 167 6.95e-52 171
Msa0474050 AT4G17980.1 51.875 160 71 3 3 157 2 160 8.61e-52 171
Msa0474050 AT3G03200.1 52.866 157 67 4 5 157 4 157 9.61e-52 177
Msa0474050 AT4G17980.2 51.875 160 71 3 3 157 2 160 9.66e-52 172
Msa0474050 AT5G53950.1 54.375 160 57 3 7 157 17 169 1.19e-51 174
Msa0474050 AT4G10350.1 50.898 167 75 3 7 169 9 172 1.33e-51 173
Msa0474050 AT3G04060.1 50.595 168 80 2 2 167 15 181 1.93e-51 172
Msa0474050 AT5G46590.1 52.201 159 70 3 3 157 2 158 1.98e-51 171
Msa0474050 AT3G15170.1 50.000 166 79 2 1 163 14 178 3.93e-51 171
Msa0474050 AT1G62700.1 45.506 178 86 4 6 177 6 178 3.97e-51 173
Msa0474050 AT1G62700.2 45.506 178 86 4 6 177 6 178 3.97e-51 173
Msa0474050 AT3G29035.1 62.791 129 47 1 4 131 21 149 4.00e-51 171
Msa0474050 AT1G12260.2 48.718 156 71 3 7 158 7 157 5.53e-51 171
Msa0474050 AT1G32770.1 41.284 218 115 4 1 205 10 227 7.69e-51 171
Msa0474050 AT1G12260.1 48.718 156 71 3 7 158 7 157 9.80e-51 172
Msa0474050 AT5G66300.1 49.686 159 72 3 7 161 12 166 1.88e-50 168
Msa0474050 AT5G46590.2 54.167 144 62 2 3 142 2 145 2.44e-50 167
Msa0474050 AT5G18270.1 52.795 161 61 3 5 157 19 172 2.67e-50 169
Msa0474050 AT5G18270.2 52.795 161 61 3 5 157 19 172 3.53e-50 169
Msa0474050 AT1G65910.1 50.920 163 74 4 5 164 4 163 3.53e-50 175
Msa0474050 AT3G10490.1 51.948 154 69 3 7 157 27 178 6.66e-50 165
Msa0474050 AT1G33280.1 51.923 156 65 3 7 158 8 157 1.03e-49 167
Msa0474050 AT1G71930.2 49.032 155 70 3 7 157 9 158 1.05e-49 167
Msa0474050 AT1G71930.1 49.032 155 70 3 7 157 9 158 1.05e-49 167
Msa0474050 AT1G32510.1 37.102 283 160 7 7 278 6 281 6.57e-49 164
Msa0474050 AT5G13180.1 54.375 160 61 4 3 158 10 161 1.07e-48 162
Msa0474050 AT4G35580.2 38.148 270 127 8 7 247 9 267 1.09e-48 169
Msa0474050 AT4G35580.3 38.148 270 127 8 7 247 9 267 1.13e-48 169
Msa0474050 AT4G35580.1 40.650 246 118 7 7 235 9 243 1.16e-48 169
Msa0474050 AT3G10490.2 51.948 154 69 3 7 157 27 178 1.68e-48 167
Msa0474050 AT3G10480.2 50.649 154 70 3 7 157 27 177 2.02e-48 167
Msa0474050 AT3G10480.1 50.649 154 71 3 7 157 27 178 4.72e-48 166
Msa0474050 AT1G33060.2 42.735 234 107 9 7 226 24 244 1.22e-47 169
Msa0474050 AT1G33060.1 42.553 235 108 9 7 227 24 245 1.26e-47 169
Msa0474050 AT1G56010.2 50.000 156 76 2 4 157 16 171 3.99e-47 160
Msa0474050 AT5G24590.2 44.041 193 94 4 7 188 13 202 4.92e-47 164
Msa0474050 AT2G46770.1 37.008 254 128 8 1 225 10 260 1.57e-46 160
Msa0474050 AT3G49530.2 48.077 156 74 3 7 158 13 165 1.28e-45 159
Msa0474050 AT3G12977.1 49.359 156 74 4 4 157 15 167 1.71e-45 155
Msa0474050 AT3G49530.1 48.077 156 74 3 7 158 13 165 3.47e-45 159
Msa0474050 AT4G28530.1 47.674 172 62 4 6 157 9 172 3.65e-45 156
Msa0474050 AT3G61910.1 43.478 184 89 6 1 170 5 187 2.69e-44 154
Msa0474050 AT3G10500.1 49.359 156 73 3 7 159 9 161 3.55e-44 158
Msa0474050 AT3G12910.1 48.538 171 72 6 9 164 23 192 3.76e-44 152
Msa0474050 AT2G17040.1 47.205 161 72 3 1 157 1 152 3.95e-44 151
Msa0474050 AT3G10480.3 42.781 187 69 3 7 157 27 211 9.26e-44 156
Msa0474050 AT5G04410.1 48.718 156 74 3 7 159 9 161 2.07e-43 156
Msa0474050 AT5G09330.5 45.000 160 82 3 3 159 2 158 4.92e-42 151
Msa0474050 AT5G09330.2 45.000 160 82 3 3 159 2 158 4.92e-42 151
Msa0474050 AT5G09330.4 45.000 160 82 3 3 159 2 158 4.92e-42 151
Msa0474050 AT5G09330.3 45.000 160 82 3 3 159 2 158 4.92e-42 151
Msa0474050 AT5G09330.1 45.000 160 82 3 3 159 2 158 4.92e-42 151
Msa0474050 AT1G34180.3 46.104 154 77 4 9 159 18 168 5.39e-41 147
Msa0474050 AT2G27300.1 44.118 170 79 4 7 174 14 169 1.89e-40 144
Msa0474050 AT1G34180.1 46.104 154 77 4 9 159 18 168 2.90e-40 147
Msa0474050 AT1G34190.1 52.381 126 57 2 9 131 18 143 1.12e-39 145
Msa0474050 AT5G64060.1 43.750 160 84 4 3 159 2 158 1.29e-39 142
Msa0474050 AT1G34180.4 42.771 166 77 4 9 159 18 180 3.51e-39 143
Msa0474050 AT3G44290.2 44.595 148 70 3 9 154 16 153 1.36e-38 135
Msa0474050 AT1G34180.2 42.771 166 77 4 9 159 18 180 1.74e-38 142
Msa0474050 AT1G32870.2 50.000 158 69 5 7 159 10 162 6.85e-38 140
Msa0474050 AT3G44290.1 44.595 148 70 3 9 154 16 153 7.50e-38 137
Msa0474050 AT1G32870.1 50.000 158 69 5 7 159 10 162 8.37e-38 140
Msa0474050 AT5G22290.1 44.444 153 72 4 9 158 23 165 1.05e-37 136
Msa0474050 AT1G32870.3 50.000 158 69 5 7 159 46 198 1.13e-37 140
Msa0474050 AT5G04395.1 41.060 151 70 3 3 135 24 173 3.67e-33 120
Msa0474050 AT2G33480.3 56.436 101 40 2 59 158 7 104 1.31e-32 119
Msa0474050 AT5G61430.2 51.261 119 56 2 55 172 1 118 1.49e-32 121
Msa0474050 AT5G22380.1 39.286 168 93 4 6 165 4 170 3.17e-32 119
Msa0474050 AT3G44350.2 38.323 167 94 5 6 165 4 168 4.17e-32 119
Msa0474050 AT4G10350.2 49.573 117 55 2 54 169 12 125 2.16e-31 119
Msa0474050 AT1G56010.1 50.000 104 51 1 55 157 1 104 3.02e-29 112
Msa0474050 AT3G44350.1 40.909 132 71 3 6 130 4 135 4.98e-29 108
Msa0474050 AT5G64530.1 36.416 173 84 4 5 163 1 161 9.73e-29 108
Msa0474050 AT4G28530.2 38.462 169 45 3 6 157 9 135 1.43e-28 112
Msa0474050 AT3G12977.2 50.000 98 46 2 61 157 19 114 9.20e-28 107
Msa0474050 AT4G01520.1 32.231 242 141 10 8 235 5 237 9.82e-28 109
Msa0474050 AT4G01550.1 42.308 130 68 3 10 132 7 136 1.34e-27 111
Msa0474050 AT5G64530.2 42.424 132 61 3 5 133 1 120 1.43e-27 105
Msa0474050 AT4G01540.3 35.263 190 106 7 10 191 7 187 7.30e-26 106
Msa0474050 AT4G01540.4 35.263 190 106 7 10 191 7 187 8.19e-26 105
Msa0474050 AT4G01540.2 32.743 226 132 9 10 224 7 223 1.05e-25 105
Msa0474050 AT4G01540.1 32.743 226 132 9 10 224 7 223 1.47e-25 105
Msa0474050 AT3G04420.2 43.077 130 69 3 5 129 1 130 6.36e-25 101
Msa0474050 AT3G04420.1 43.077 130 69 3 5 129 1 130 1.70e-24 101
Msa0474050 AT2G43000.2 48.889 90 43 2 69 157 2 89 3.24e-23 94.7
Msa0474050 AT1G02230.1 39.259 135 71 4 8 134 4 135 4.53e-23 97.8
Msa0474050 AT1G02220.1 35.366 164 90 5 5 163 1 153 2.32e-21 93.2
Msa0474050 AT5G14000.2 34.899 149 92 3 1 146 9 155 1.33e-20 86.7
Msa0474050 AT5G14000.1 33.333 162 97 5 1 159 9 162 1.42e-20 87.8
Msa0474050 AT3G10490.4 51.899 79 35 2 80 157 2 78 2.42e-20 90.1
Msa0474050 AT3G10490.3 51.899 79 35 2 80 157 2 78 2.42e-20 90.1
Msa0474050 AT1G02250.1 40.769 130 66 4 8 129 4 130 2.92e-20 89.7
Msa0474050 AT3G56530.1 34.395 157 92 5 4 155 49 199 3.25e-18 83.6
Msa0474050 AT1G01010.1 36.957 138 72 5 5 129 1 136 9.12e-18 83.2
Msa0474050 AT2G18060.2 43.373 83 41 2 85 166 2 79 6.36e-16 76.6
Msa0474050 AT3G55210.1 32.335 167 85 7 7 155 11 167 1.02e-15 75.9
Msa0474050 AT5G50820.1 34.058 138 70 5 5 133 15 140 1.09e-14 71.6
Msa0474050 AT3G04430.1 34.351 131 71 5 13 129 6 135 6.42e-13 66.6
Msa0474050 AT3G56520.1 29.775 178 91 7 7 167 8 168 6.24e-12 63.5
Msa0474050 AT4G29230.1 31.169 154 76 6 7 133 48 198 4.76e-11 63.5
Msa0474050 AT4G29230.2 31.169 154 76 6 7 133 47 197 5.21e-11 63.5
Msa0474050 AT4G29230.3 31.169 154 76 6 7 133 48 198 5.50e-11 63.2
Msa0474050 AT5G22290.2 35.922 103 46 5 86 182 2 90 8.14e-11 61.6

Find 85 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAAGGAGTTAAAACTAAT+TGG 0.189428 3_3:+76867770 Msa0474050:CDS
ACATGGACCATTTGGAATAT+TGG 0.279197 3_3:+76868606 Msa0474050:three_prime_UTR
GAGCTGCTGGAAGTGGTTAT+TGG 0.288932 3_3:+76867662 Msa0474050:CDS
GAACCAGCTTTCGCCGTTAC+AGG 0.306449 3_3:+76868373 Msa0474050:CDS
ACTACATGGCCCATTAGATT+TGG 0.327623 3_3:-76868738 None:intergenic
CTAGAGTCCGTGTGCAGCTT+TGG 0.329733 3_3:-76868167 None:intergenic
AATACCATTCTTTCTCACTA+TGG 0.343467 3_3:-76867591 None:intergenic
CGATTTGGCCGCGAACCATT+AGG 0.350658 3_3:-76867640 None:intergenic
TTTGATCCATGGCAGCTTCC+AGG 0.350717 3_3:+76867463 Msa0474050:CDS
GATATTGACAATGACCCCTT+TGG 0.359679 3_3:+76868332 Msa0474050:CDS
AGGTGTAGATCCAAATCTAA+TGG 0.367167 3_3:+76868728 Msa0474050:three_prime_UTR
TTCTCTGTTCTAGAGTGATC+AGG 0.367936 3_3:+76868565 Msa0474050:three_prime_UTR
CCACTTCCAGCAGCTCGATT+TGG 0.370452 3_3:-76867655 None:intergenic
GAAGCCGATGGGGATTAAAA+AGG 0.375581 3_3:+76867720 Msa0474050:CDS
TGATCAGGGAATTGTGGTTT+TGG 0.376771 3_3:+76868580 Msa0474050:three_prime_UTR
ACCACGTACAGTGGTTAATT+AGG 0.382891 3_3:-76868522 None:intergenic
ATCGGCTTCAATTTCCCAAT+TGG 0.383323 3_3:-76867706 None:intergenic
TCACCCCACTGATGAAGAAT+TGG 0.389683 3_3:+76867363 Msa0474050:CDS
ACGGCGAAAGCTGGTTCATT+TGG 0.397197 3_3:-76868367 None:intergenic
CTGGTTCATTTGGTACTGAT+TGG 0.398001 3_3:-76868357 None:intergenic
GAACCTAAGTGGAATGATCT+TGG 0.399272 3_3:+76868248 Msa0474050:CDS
AAATCAACTTCTTTGACAAC+GGG 0.403446 3_3:-76867433 None:intergenic
CAATTTGCAGCTTGATGATT+GGG 0.405128 3_3:+76867974 Msa0474050:intron
TTTGGTTGACATGGACCATT+TGG 0.407509 3_3:+76868598 Msa0474050:three_prime_UTR
TTAGGATACTTTCTGTCCCT+TGG 0.410126 3_3:-76867622 None:intergenic
ACTGGAGCTGATAAACCAAT+TGG 0.421581 3_3:+76867691 Msa0474050:CDS
CTGAAGTGTCCATGTACAAT+TGG 0.422519 3_3:-76868136 None:intergenic
ATATTGACAATGACCCCTTT+GGG 0.425194 3_3:+76868333 Msa0474050:CDS
AACCACTGTACGTGGTCACT+TGG 0.436160 3_3:+76868529 Msa0474050:three_prime_UTR
ACAATTTGCAGCTTGATGAT+TGG 0.442736 3_3:+76867973 Msa0474050:intron
TGTAGAATTTACAACAAGAA+AGG 0.459071 3_3:+76868002 Msa0474050:CDS
TCGCGGCCAAATCGAGCTGC+TGG 0.461608 3_3:+76867649 Msa0474050:CDS
AACCTAAGTGGAATGATCTT+GGG 0.472070 3_3:+76868249 Msa0474050:CDS
TGGTACTGATTGGTCCCAAA+GGG 0.477409 3_3:-76868347 None:intergenic
CAAATCAACTTCTTTGACAA+CGG 0.479813 3_3:-76867434 None:intergenic
TCTCTGTCGCACGTGACATC+CGG 0.481694 3_3:-76868215 None:intergenic
GGTGTAGATCCAAATCTAAT+GGG 0.482415 3_3:+76868729 Msa0474050:three_prime_UTR
AGTGGTTATTGGAAAGCTAC+TGG 0.486265 3_3:+76867673 Msa0474050:CDS
CCAAATCGAGCTGCTGGAAG+TGG 0.489371 3_3:+76867655 Msa0474050:CDS
ATTAGGTCCAATATTCCAAA+TGG 0.490522 3_3:-76868613 None:intergenic
CACACGGACTCTAGCAGCTC+CGG 0.496485 3_3:+76868176 Msa0474050:CDS
AGGGACAGAAAGTATCCTAA+TGG 0.497448 3_3:+76867625 Msa0474050:CDS
CGGTGGACACGTGGTTTCAC+CGG 0.498892 3_3:+76868196 Msa0474050:CDS
GCCATGTAGTGTTCTGTAGC+TGG 0.507851 3_3:+76868751 Msa0474050:three_prime_UTR
CTAGAGTGATCAGGGAATTG+TGG 0.509713 3_3:+76868574 Msa0474050:three_prime_UTR
TTCACCAATTCTTCATCAGT+GGG 0.514077 3_3:-76867367 None:intergenic
TAAGTACCTGGAAGCTGCCA+TGG 0.514238 3_3:-76867469 None:intergenic
CTGGAGCTGATAAACCAATT+GGG 0.521189 3_3:+76867692 Msa0474050:CDS
GCCAACGTTGATAGATCAGC+CGG 0.527376 3_3:+76867814 Msa0474050:CDS
GTTACCATAGTGAGAAAGAA+TGG 0.534616 3_3:+76867587 Msa0474050:CDS
CGGTGAAACCACGTGTCCAC+CGG 0.537364 3_3:-76868195 None:intergenic
TGTCCTGTAACGGCGAAAGC+TGG 0.540291 3_3:-76868376 None:intergenic
TACTTGTGTCGCAAATGTGC+TGG 0.543753 3_3:+76867394 Msa0474050:CDS
AATTGGGAAATTGAAGCCGA+TGG 0.549113 3_3:+76867708 Msa0474050:CDS
AGGTGCAGAGTGAACCTAAG+TGG 0.554479 3_3:+76868237 Msa0474050:CDS
GAATGATCTTGGGATACAGC+TGG 0.555420 3_3:+76868259 Msa0474050:CDS
TCTCTGTTCTAGAGTGATCA+GGG 0.560529 3_3:+76868566 Msa0474050:three_prime_UTR
GGGGAATTACCAATTGTACA+TGG 0.561485 3_3:+76868127 Msa0474050:CDS
ATTGGGAAATTGAAGCCGAT+GGG 0.565472 3_3:+76867709 Msa0474050:CDS
ATTCACCAATTCTTCATCAG+TGG 0.576758 3_3:-76867368 None:intergenic
ACCAGCTACAGAACACTACA+TGG 0.581418 3_3:-76868752 None:intergenic
GAAAGTATCCTAATGGTTCG+CGG 0.583925 3_3:+76867632 Msa0474050:CDS
ATCCCAAGATCATTCCACTT+AGG 0.585889 3_3:-76868251 None:intergenic
TTGGTACTGATTGGTCCCAA+AGG 0.586250 3_3:-76868348 None:intergenic
ATTTGTATAAGTTTGATCCA+TGG 0.588059 3_3:+76867452 Msa0474050:CDS
TACATGAACATGTCCTGTAA+CGG 0.591002 3_3:-76868386 None:intergenic
ACCACTGTACGTGGTCACTT+GGG 0.592892 3_3:+76868530 Msa0474050:three_prime_UTR
TAGCAGCTCCGGTGGACACG+TGG 0.600073 3_3:+76868187 Msa0474050:CDS
ACACAAGAAACAAGAATGCA+AGG 0.604942 3_3:+76867310 Msa0474050:exon
TCCGGCTGATCTATCAACGT+TGG 0.609930 3_3:-76867815 None:intergenic
AAGGCGTTAGTATTCTATGC+CGG 0.611791 3_3:+76867739 Msa0474050:CDS
ACGGACTCTAGCAGCTCCGG+TGG 0.613169 3_3:+76868179 Msa0474050:CDS
TTCAGTTCCAAAGCTGCACA+CGG 0.613734 3_3:+76868160 Msa0474050:CDS
ACCTAATTAACCACTGTACG+TGG 0.628958 3_3:+76868521 Msa0474050:three_prime_UTR
GTGGGGTGAAATCTGAAACC+AGG 0.631314 3_3:-76867349 None:intergenic
TTGGGAAATTGAAGCCGATG+GGG 0.639522 3_3:+76867710 Msa0474050:CDS
ACCCAAGTGACCACGTACAG+TGG 0.646480 3_3:-76868531 None:intergenic
CAACACTAGTAACACACCAA+AGG 0.649514 3_3:+76868040 Msa0474050:CDS
AGATTTGGATCTACACCTAG+TGG 0.652487 3_3:-76868723 None:intergenic
AGGATTATCTTATCTCCACT+AGG 0.657020 3_3:+76868708 Msa0474050:three_prime_UTR
GGTGAATTAGAATTACCACC+TGG 0.666365 3_3:+76867331 Msa0474050:CDS
GGTACTGATTGGTCCCAAAG+GGG 0.684157 3_3:-76868346 None:intergenic
GGATGTCACGTGCGACAGAG+AGG 0.706107 3_3:+76868217 Msa0474050:CDS
TCACCAATTCTTCATCAGTG+GGG 0.710619 3_3:-76867366 None:intergenic
GGGTGAAATCTGAAACCAGG+TGG 0.741808 3_3:-76867346 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATAAAATTTGACTA+AGG - chr3_3:76867511-76867530 None:intergenic 10.0%
!! AAAATAATAAAATTTGACTA+AGG - chr3_3:76867511-76867530 None:intergenic 10.0%
!! ATAATTATTCATTTGCAATT+GGG - chr3_3:76867538-76867557 None:intergenic 15.0%
!! AATAATTATTCATTTGCAAT+TGG - chr3_3:76867539-76867558 None:intergenic 15.0%
!! TTTATTTATGTTTACAGAAA+TGG + chr3_3:76867564-76867583 Msa0474050:intron 15.0%
!! TTATTTATGTTTACAGAAAT+GGG + chr3_3:76867565-76867584 Msa0474050:intron 15.0%
!!! TAGTTTTTTCAGATTATTAT+TGG + chr3_3:76867885-76867904 Msa0474050:intron 15.0%
!!! TGAAAGAAAAAAAGATTTTT+TGG + chr3_3:76868438-76868457 Msa0474050:three_prime_UTR 15.0%
!!! AAAAAAAGATTTTTTGGAAA+GGG + chr3_3:76868444-76868463 Msa0474050:three_prime_UTR 15.0%
!! CTACAAAAAATTAACTAATT+AGG - chr3_3:76868484-76868503 None:intergenic 15.0%
!!! CTAATTAGTTAATTTTTTGT+AGG + chr3_3:76868482-76868501 Msa0474050:three_prime_UTR 15.0%
!! ATAATTATTCATTTGCAATT+GGG - chr3_3:76867538-76867557 None:intergenic 15.0%
!! AATAATTATTCATTTGCAAT+TGG - chr3_3:76867539-76867558 None:intergenic 15.0%
!! TTTATTTATGTTTACAGAAA+TGG + chr3_3:76867564-76867583 Msa0474050:intron 15.0%
!! TTATTTATGTTTACAGAAAT+GGG + chr3_3:76867565-76867584 Msa0474050:intron 15.0%
!!! TAGTTTTTTCAGATTATTAT+TGG + chr3_3:76867885-76867904 Msa0474050:intron 15.0%
!!! TGAAAGAAAAAAAGATTTTT+TGG + chr3_3:76868438-76868457 Msa0474050:three_prime_UTR 15.0%
!!! AAAAAAAGATTTTTTGGAAA+GGG + chr3_3:76868444-76868463 Msa0474050:three_prime_UTR 15.0%
!! CTACAAAAAATTAACTAATT+AGG - chr3_3:76868484-76868503 None:intergenic 15.0%
!!! CTAATTAGTTAATTTTTTGT+AGG + chr3_3:76868482-76868501 Msa0474050:three_prime_UTR 15.0%
!!! TCATAATAATTTTGAACCTT+TGG - chr3_3:76868059-76868078 None:intergenic 20.0%
!! TTCAAAAAGAAGAATCAAAA+TGG - chr3_3:76868422-76868441 None:intergenic 20.0%
!!! GAAAAAAAGATTTTTTGGAA+AGG + chr3_3:76868443-76868462 Msa0474050:three_prime_UTR 20.0%
!! TAAAAAAACAAATAAGCAGT+AGG + chr3_3:76868688-76868707 Msa0474050:three_prime_UTR 20.0%
!!! TCATAATAATTTTGAACCTT+TGG - chr3_3:76868059-76868078 None:intergenic 20.0%
!! TTCAAAAAGAAGAATCAAAA+TGG - chr3_3:76868422-76868441 None:intergenic 20.0%
!!! GAAAAAAAGATTTTTTGGAA+AGG + chr3_3:76868443-76868462 Msa0474050:three_prime_UTR 20.0%
!! TAAAAAAACAAATAAGCAGT+AGG + chr3_3:76868688-76868707 Msa0474050:three_prime_UTR 20.0%
! ATTTGTATAAGTTTGATCCA+TGG + chr3_3:76867452-76867471 Msa0474050:CDS 25.0%
!!! AATTAGTTTTAACTCCTTTG+GGG - chr3_3:76867771-76867790 None:intergenic 25.0%
!!! CAATTAGTTTTAACTCCTTT+GGG - chr3_3:76867772-76867791 None:intergenic 25.0%
! GTTAATGCTTCATACAAAAA+TGG + chr3_3:76867926-76867945 Msa0474050:intron 25.0%
!! AAAATGGATTTATCTGATTG+TGG + chr3_3:76867942-76867961 Msa0474050:intron 25.0%
! TGTAGAATTTACAACAAGAA+AGG + chr3_3:76868002-76868021 Msa0474050:CDS 25.0%
! AAGCCAGAAATTCAAAAATT+GGG + chr3_3:76868107-76868126 Msa0474050:CDS 25.0%
!!! ATTTTTTGGAAAGGGATATT+GGG + chr3_3:76868452-76868471 Msa0474050:three_prime_UTR 25.0%
! AAAAAGAGATGAATTCTAGA+AGG + chr3_3:76868642-76868661 Msa0474050:three_prime_UTR 25.0%
! ATTTGTATAAGTTTGATCCA+TGG + chr3_3:76867452-76867471 Msa0474050:CDS 25.0%
!!! AATTAGTTTTAACTCCTTTG+GGG - chr3_3:76867771-76867790 None:intergenic 25.0%
!!! CAATTAGTTTTAACTCCTTT+GGG - chr3_3:76867772-76867791 None:intergenic 25.0%
! GTTAATGCTTCATACAAAAA+TGG + chr3_3:76867926-76867945 Msa0474050:intron 25.0%
!! AAAATGGATTTATCTGATTG+TGG + chr3_3:76867942-76867961 Msa0474050:intron 25.0%
! TGTAGAATTTACAACAAGAA+AGG + chr3_3:76868002-76868021 Msa0474050:CDS 25.0%
! AAGCCAGAAATTCAAAAATT+GGG + chr3_3:76868107-76868126 Msa0474050:CDS 25.0%
!!! ATTTTTTGGAAAGGGATATT+GGG + chr3_3:76868452-76868471 Msa0474050:three_prime_UTR 25.0%
! AAAAAGAGATGAATTCTAGA+AGG + chr3_3:76868642-76868661 Msa0474050:three_prime_UTR 25.0%
! TATGTTCTGTTTTGTGAGTT+TGG - chr3_3:76867173-76867192 None:intergenic 30.0%
AAATCAACTTCTTTGACAAC+GGG - chr3_3:76867436-76867455 None:intergenic 30.0%
CAAATCAACTTCTTTGACAA+CGG - chr3_3:76867437-76867456 None:intergenic 30.0%
ATTATTCATTTGCAATTGGG+AGG - chr3_3:76867535-76867554 None:intergenic 30.0%
AATACCATTCTTTCTCACTA+TGG - chr3_3:76867594-76867613 None:intergenic 30.0%
!!! AATGGTATTTTTTCTCTCCA+AGG + chr3_3:76867605-76867624 Msa0474050:CDS 30.0%
!!! ATGGTATTTTTTCTCTCCAA+GGG + chr3_3:76867606-76867625 Msa0474050:CDS 30.0%
!!! ATTAGTTTTAACTCCTTTGG+GGG - chr3_3:76867770-76867789 None:intergenic 30.0%
!!! CCAATTAGTTTTAACTCCTT+TGG - chr3_3:76867773-76867792 None:intergenic 30.0%
CCAAAGGAGTTAAAACTAAT+TGG + chr3_3:76867770-76867789 Msa0474050:CDS 30.0%
GAAGCCAGAAATTCAAAAAT+TGG + chr3_3:76868106-76868125 Msa0474050:CDS 30.0%
AGCCAGAAATTCAAAAATTG+GGG + chr3_3:76868108-76868127 Msa0474050:CDS 30.0%
! TTCCCCAATTTTTGAATTTC+TGG - chr3_3:76868113-76868132 None:intergenic 30.0%
! TGATTTTCAGCTCAATTACT+TGG + chr3_3:76868292-76868311 Msa0474050:CDS 30.0%
! AGAATCAAAATGGCTTTTGT+GGG - chr3_3:76868412-76868431 None:intergenic 30.0%
! AAGAATCAAAATGGCTTTTG+TGG - chr3_3:76868413-76868432 None:intergenic 30.0%
!!! GATTTTTTGGAAAGGGATAT+TGG + chr3_3:76868451-76868470 Msa0474050:three_prime_UTR 30.0%
!!! TTTTTTGGAAAGGGATATTG+GGG + chr3_3:76868453-76868472 Msa0474050:three_prime_UTR 30.0%
ATTAGGTCCAATATTCCAAA+TGG - chr3_3:76868616-76868635 None:intergenic 30.0%
! CATCTCTTTTTGCACAAATT+AGG - chr3_3:76868633-76868652 None:intergenic 30.0%
! TATGTTCTGTTTTGTGAGTT+TGG - chr3_3:76867173-76867192 None:intergenic 30.0%
AAATCAACTTCTTTGACAAC+GGG - chr3_3:76867436-76867455 None:intergenic 30.0%
CAAATCAACTTCTTTGACAA+CGG - chr3_3:76867437-76867456 None:intergenic 30.0%
ATTATTCATTTGCAATTGGG+AGG - chr3_3:76867535-76867554 None:intergenic 30.0%
AATACCATTCTTTCTCACTA+TGG - chr3_3:76867594-76867613 None:intergenic 30.0%
!!! AATGGTATTTTTTCTCTCCA+AGG + chr3_3:76867605-76867624 Msa0474050:CDS 30.0%
!!! ATGGTATTTTTTCTCTCCAA+GGG + chr3_3:76867606-76867625 Msa0474050:CDS 30.0%
!!! ATTAGTTTTAACTCCTTTGG+GGG - chr3_3:76867770-76867789 None:intergenic 30.0%
!!! CCAATTAGTTTTAACTCCTT+TGG - chr3_3:76867773-76867792 None:intergenic 30.0%
CCAAAGGAGTTAAAACTAAT+TGG + chr3_3:76867770-76867789 Msa0474050:CDS 30.0%
GAAGCCAGAAATTCAAAAAT+TGG + chr3_3:76868106-76868125 Msa0474050:CDS 30.0%
AGCCAGAAATTCAAAAATTG+GGG + chr3_3:76868108-76868127 Msa0474050:CDS 30.0%
! TTCCCCAATTTTTGAATTTC+TGG - chr3_3:76868113-76868132 None:intergenic 30.0%
! TGATTTTCAGCTCAATTACT+TGG + chr3_3:76868292-76868311 Msa0474050:CDS 30.0%
! AGAATCAAAATGGCTTTTGT+GGG - chr3_3:76868412-76868431 None:intergenic 30.0%
! AAGAATCAAAATGGCTTTTG+TGG - chr3_3:76868413-76868432 None:intergenic 30.0%
!!! GATTTTTTGGAAAGGGATAT+TGG + chr3_3:76868451-76868470 Msa0474050:three_prime_UTR 30.0%
!!! TTTTTTGGAAAGGGATATTG+GGG + chr3_3:76868453-76868472 Msa0474050:three_prime_UTR 30.0%
ATTAGGTCCAATATTCCAAA+TGG - chr3_3:76868616-76868635 None:intergenic 30.0%
! CATCTCTTTTTGCACAAATT+AGG - chr3_3:76868633-76868652 None:intergenic 30.0%
ACACAAGAAACAAGAATGCA+AGG + chr3_3:76867310-76867329 Msa0474050:exon 35.0%
TTCACCAATTCTTCATCAGT+GGG - chr3_3:76867370-76867389 None:intergenic 35.0%
ATTCACCAATTCTTCATCAG+TGG - chr3_3:76867371-76867390 None:intergenic 35.0%
! TTCTAGCTAGATTAAGTACC+TGG - chr3_3:76867484-76867503 None:intergenic 35.0%
GTTACCATAGTGAGAAAGAA+TGG + chr3_3:76867587-76867606 Msa0474050:CDS 35.0%
!!! CCTCAAGTTGTTTTTCTTTC+CGG - chr3_3:76867836-76867855 None:intergenic 35.0%
CGGAAAGAAAAACAACTTGA+GGG + chr3_3:76867834-76867853 Msa0474050:CDS 35.0%
! AAACAACTTGAGGGTATGTT+TGG + chr3_3:76867843-76867862 Msa0474050:intron 35.0%
! ACAATTTGCAGCTTGATGAT+TGG + chr3_3:76867973-76867992 Msa0474050:intron 35.0%
! CAATTTGCAGCTTGATGATT+GGG + chr3_3:76867974-76867993 Msa0474050:intron 35.0%
AACCTAAGTGGAATGATCTT+GGG + chr3_3:76868249-76868268 Msa0474050:CDS 35.0%
ATATTGACAATGACCCCTTT+GGG + chr3_3:76868333-76868352 Msa0474050:CDS 35.0%
TACATGAACATGTCCTGTAA+CGG - chr3_3:76868389-76868408 None:intergenic 35.0%
!! TTTTTGGAAAGGGATATTGG+GGG + chr3_3:76868454-76868473 Msa0474050:three_prime_UTR 35.0%
!!! AATTGTGGTTTTGGTTGACA+TGG + chr3_3:76868589-76868608 Msa0474050:three_prime_UTR 35.0%
! ACATGGACCATTTGGAATAT+TGG + chr3_3:76868606-76868625 Msa0474050:three_prime_UTR 35.0%
AGGATTATCTTATCTCCACT+AGG + chr3_3:76868708-76868727 Msa0474050:three_prime_UTR 35.0%
AGGTGTAGATCCAAATCTAA+TGG + chr3_3:76868728-76868747 Msa0474050:three_prime_UTR 35.0%
GGTGTAGATCCAAATCTAAT+GGG + chr3_3:76868729-76868748 Msa0474050:three_prime_UTR 35.0%
ACACAAGAAACAAGAATGCA+AGG + chr3_3:76867310-76867329 Msa0474050:exon 35.0%
TTCACCAATTCTTCATCAGT+GGG - chr3_3:76867370-76867389 None:intergenic 35.0%
ATTCACCAATTCTTCATCAG+TGG - chr3_3:76867371-76867390 None:intergenic 35.0%
! TTCTAGCTAGATTAAGTACC+TGG - chr3_3:76867484-76867503 None:intergenic 35.0%
GTTACCATAGTGAGAAAGAA+TGG + chr3_3:76867587-76867606 Msa0474050:CDS 35.0%
!!! CCTCAAGTTGTTTTTCTTTC+CGG - chr3_3:76867836-76867855 None:intergenic 35.0%
CGGAAAGAAAAACAACTTGA+GGG + chr3_3:76867834-76867853 Msa0474050:CDS 35.0%
! AAACAACTTGAGGGTATGTT+TGG + chr3_3:76867843-76867862 Msa0474050:intron 35.0%
! ACAATTTGCAGCTTGATGAT+TGG + chr3_3:76867973-76867992 Msa0474050:intron 35.0%
! CAATTTGCAGCTTGATGATT+GGG + chr3_3:76867974-76867993 Msa0474050:intron 35.0%
AACCTAAGTGGAATGATCTT+GGG + chr3_3:76868249-76868268 Msa0474050:CDS 35.0%
ATATTGACAATGACCCCTTT+GGG + chr3_3:76868333-76868352 Msa0474050:CDS 35.0%
TACATGAACATGTCCTGTAA+CGG - chr3_3:76868389-76868408 None:intergenic 35.0%
!! TTTTTGGAAAGGGATATTGG+GGG + chr3_3:76868454-76868473 Msa0474050:three_prime_UTR 35.0%
!!! AATTGTGGTTTTGGTTGACA+TGG + chr3_3:76868589-76868608 Msa0474050:three_prime_UTR 35.0%
! ACATGGACCATTTGGAATAT+TGG + chr3_3:76868606-76868625 Msa0474050:three_prime_UTR 35.0%
AGGATTATCTTATCTCCACT+AGG + chr3_3:76868708-76868727 Msa0474050:three_prime_UTR 35.0%
AGGTGTAGATCCAAATCTAA+TGG + chr3_3:76868728-76868747 Msa0474050:three_prime_UTR 35.0%
GGTGTAGATCCAAATCTAAT+GGG + chr3_3:76868729-76868748 Msa0474050:three_prime_UTR 35.0%
GGTGAATTAGAATTACCACC+TGG + chr3_3:76867331-76867350 Msa0474050:CDS 40.0%
TCACCAATTCTTCATCAGTG+GGG - chr3_3:76867369-76867388 None:intergenic 40.0%
TTAGGATACTTTCTGTCCCT+TGG - chr3_3:76867625-76867644 None:intergenic 40.0%
!! AGGGACAGAAAGTATCCTAA+TGG + chr3_3:76867625-76867644 Msa0474050:CDS 40.0%
!! GAAAGTATCCTAATGGTTCG+CGG + chr3_3:76867632-76867651 Msa0474050:CDS 40.0%
AGTGGTTATTGGAAAGCTAC+TGG + chr3_3:76867673-76867692 Msa0474050:CDS 40.0%
ACTGGAGCTGATAAACCAAT+TGG + chr3_3:76867691-76867710 Msa0474050:CDS 40.0%
CTGGAGCTGATAAACCAATT+GGG + chr3_3:76867692-76867711 Msa0474050:CDS 40.0%
! ATCGGCTTCAATTTCCCAAT+TGG - chr3_3:76867709-76867728 None:intergenic 40.0%
AATTGGGAAATTGAAGCCGA+TGG + chr3_3:76867708-76867727 Msa0474050:CDS 40.0%
ATTGGGAAATTGAAGCCGAT+GGG + chr3_3:76867709-76867728 Msa0474050:CDS 40.0%
! AACGCCTTTTTAATCCCCAT+CGG - chr3_3:76867727-76867746 None:intergenic 40.0%
! AAGGCGTTAGTATTCTATGC+CGG + chr3_3:76867739-76867758 Msa0474050:CDS 40.0%
CCGGAAAGAAAAACAACTTG+AGG + chr3_3:76867833-76867852 Msa0474050:CDS 40.0%
CAACACTAGTAACACACCAA+AGG + chr3_3:76868040-76868059 Msa0474050:CDS 40.0%
GGGGAATTACCAATTGTACA+TGG + chr3_3:76868127-76868146 Msa0474050:CDS 40.0%
! CTGAAGTGTCCATGTACAAT+TGG - chr3_3:76868139-76868158 None:intergenic 40.0%
GAACCTAAGTGGAATGATCT+TGG + chr3_3:76868248-76868267 Msa0474050:CDS 40.0%
ATCCCAAGATCATTCCACTT+AGG - chr3_3:76868254-76868273 None:intergenic 40.0%
GATATTGACAATGACCCCTT+TGG + chr3_3:76868332-76868351 Msa0474050:CDS 40.0%
!! CTGGTTCATTTGGTACTGAT+TGG - chr3_3:76868360-76868379 None:intergenic 40.0%
!! TTTTGGAAAGGGATATTGGG+GGG + chr3_3:76868455-76868474 Msa0474050:three_prime_UTR 40.0%
ACCTAATTAACCACTGTACG+TGG + chr3_3:76868521-76868540 Msa0474050:three_prime_UTR 40.0%
ACCACGTACAGTGGTTAATT+AGG - chr3_3:76868525-76868544 None:intergenic 40.0%
!! TTCTCTGTTCTAGAGTGATC+AGG + chr3_3:76868565-76868584 Msa0474050:three_prime_UTR 40.0%
!! TCTCTGTTCTAGAGTGATCA+GGG + chr3_3:76868566-76868585 Msa0474050:three_prime_UTR 40.0%
! TGATCAGGGAATTGTGGTTT+TGG + chr3_3:76868580-76868599 Msa0474050:three_prime_UTR 40.0%
TTTGGTTGACATGGACCATT+TGG + chr3_3:76868598-76868617 Msa0474050:three_prime_UTR 40.0%
AGATTTGGATCTACACCTAG+TGG - chr3_3:76868726-76868745 None:intergenic 40.0%
ACTACATGGCCCATTAGATT+TGG - chr3_3:76868741-76868760 None:intergenic 40.0%
GGTGAATTAGAATTACCACC+TGG + chr3_3:76867331-76867350 Msa0474050:CDS 40.0%
TCACCAATTCTTCATCAGTG+GGG - chr3_3:76867369-76867388 None:intergenic 40.0%
TTAGGATACTTTCTGTCCCT+TGG - chr3_3:76867625-76867644 None:intergenic 40.0%
!! AGGGACAGAAAGTATCCTAA+TGG + chr3_3:76867625-76867644 Msa0474050:CDS 40.0%
!! GAAAGTATCCTAATGGTTCG+CGG + chr3_3:76867632-76867651 Msa0474050:CDS 40.0%
AGTGGTTATTGGAAAGCTAC+TGG + chr3_3:76867673-76867692 Msa0474050:CDS 40.0%
ACTGGAGCTGATAAACCAAT+TGG + chr3_3:76867691-76867710 Msa0474050:CDS 40.0%
CTGGAGCTGATAAACCAATT+GGG + chr3_3:76867692-76867711 Msa0474050:CDS 40.0%
! ATCGGCTTCAATTTCCCAAT+TGG - chr3_3:76867709-76867728 None:intergenic 40.0%
AATTGGGAAATTGAAGCCGA+TGG + chr3_3:76867708-76867727 Msa0474050:CDS 40.0%
ATTGGGAAATTGAAGCCGAT+GGG + chr3_3:76867709-76867728 Msa0474050:CDS 40.0%
! AACGCCTTTTTAATCCCCAT+CGG - chr3_3:76867727-76867746 None:intergenic 40.0%
! AAGGCGTTAGTATTCTATGC+CGG + chr3_3:76867739-76867758 Msa0474050:CDS 40.0%
CCGGAAAGAAAAACAACTTG+AGG + chr3_3:76867833-76867852 Msa0474050:CDS 40.0%
CAACACTAGTAACACACCAA+AGG + chr3_3:76868040-76868059 Msa0474050:CDS 40.0%
GGGGAATTACCAATTGTACA+TGG + chr3_3:76868127-76868146 Msa0474050:CDS 40.0%
! CTGAAGTGTCCATGTACAAT+TGG - chr3_3:76868139-76868158 None:intergenic 40.0%
GAACCTAAGTGGAATGATCT+TGG + chr3_3:76868248-76868267 Msa0474050:CDS 40.0%
ATCCCAAGATCATTCCACTT+AGG - chr3_3:76868254-76868273 None:intergenic 40.0%
GATATTGACAATGACCCCTT+TGG + chr3_3:76868332-76868351 Msa0474050:CDS 40.0%
!! CTGGTTCATTTGGTACTGAT+TGG - chr3_3:76868360-76868379 None:intergenic 40.0%
!! TTTTGGAAAGGGATATTGGG+GGG + chr3_3:76868455-76868474 Msa0474050:three_prime_UTR 40.0%
ACCTAATTAACCACTGTACG+TGG + chr3_3:76868521-76868540 Msa0474050:three_prime_UTR 40.0%
ACCACGTACAGTGGTTAATT+AGG - chr3_3:76868525-76868544 None:intergenic 40.0%
!! TTCTCTGTTCTAGAGTGATC+AGG + chr3_3:76868565-76868584 Msa0474050:three_prime_UTR 40.0%
!! TCTCTGTTCTAGAGTGATCA+GGG + chr3_3:76868566-76868585 Msa0474050:three_prime_UTR 40.0%
! TGATCAGGGAATTGTGGTTT+TGG + chr3_3:76868580-76868599 Msa0474050:three_prime_UTR 40.0%
TTTGGTTGACATGGACCATT+TGG + chr3_3:76868598-76868617 Msa0474050:three_prime_UTR 40.0%
AGATTTGGATCTACACCTAG+TGG - chr3_3:76868726-76868745 None:intergenic 40.0%
ACTACATGGCCCATTAGATT+TGG - chr3_3:76868741-76868760 None:intergenic 40.0%
TCACCCCACTGATGAAGAAT+TGG + chr3_3:76867363-76867382 Msa0474050:CDS 45.0%
TACTTGTGTCGCAAATGTGC+TGG + chr3_3:76867394-76867413 Msa0474050:CDS 45.0%
TTGGGAAATTGAAGCCGATG+GGG + chr3_3:76867710-76867729 Msa0474050:CDS 45.0%
GAAGCCGATGGGGATTAAAA+AGG + chr3_3:76867720-76867739 Msa0474050:CDS 45.0%
TTCAGTTCCAAAGCTGCACA+CGG + chr3_3:76868160-76868179 Msa0474050:CDS 45.0%
GAATGATCTTGGGATACAGC+TGG + chr3_3:76868259-76868278 Msa0474050:CDS 45.0%
!! TGGTACTGATTGGTCCCAAA+GGG - chr3_3:76868350-76868369 None:intergenic 45.0%
!! TTGGTACTGATTGGTCCCAA+AGG - chr3_3:76868351-76868370 None:intergenic 45.0%
CTAGAGTGATCAGGGAATTG+TGG + chr3_3:76868574-76868593 Msa0474050:three_prime_UTR 45.0%
ACCAGCTACAGAACACTACA+TGG - chr3_3:76868755-76868774 None:intergenic 45.0%
TCACCCCACTGATGAAGAAT+TGG + chr3_3:76867363-76867382 Msa0474050:CDS 45.0%
TACTTGTGTCGCAAATGTGC+TGG + chr3_3:76867394-76867413 Msa0474050:CDS 45.0%
TTGGGAAATTGAAGCCGATG+GGG + chr3_3:76867710-76867729 Msa0474050:CDS 45.0%
GAAGCCGATGGGGATTAAAA+AGG + chr3_3:76867720-76867739 Msa0474050:CDS 45.0%
TTCAGTTCCAAAGCTGCACA+CGG + chr3_3:76868160-76868179 Msa0474050:CDS 45.0%
GAATGATCTTGGGATACAGC+TGG + chr3_3:76868259-76868278 Msa0474050:CDS 45.0%
!! TGGTACTGATTGGTCCCAAA+GGG - chr3_3:76868350-76868369 None:intergenic 45.0%
!! TTGGTACTGATTGGTCCCAA+AGG - chr3_3:76868351-76868370 None:intergenic 45.0%
CTAGAGTGATCAGGGAATTG+TGG + chr3_3:76868574-76868593 Msa0474050:three_prime_UTR 45.0%
ACCAGCTACAGAACACTACA+TGG - chr3_3:76868755-76868774 None:intergenic 45.0%
! GGGTGAAATCTGAAACCAGG+TGG - chr3_3:76867349-76867368 None:intergenic 50.0%
! GTGGGGTGAAATCTGAAACC+AGG - chr3_3:76867352-76867371 None:intergenic 50.0%
TTTGATCCATGGCAGCTTCC+AGG + chr3_3:76867463-76867482 Msa0474050:CDS 50.0%
TAAGTACCTGGAAGCTGCCA+TGG - chr3_3:76867472-76867491 None:intergenic 50.0%
GAGCTGCTGGAAGTGGTTAT+TGG + chr3_3:76867662-76867681 Msa0474050:CDS 50.0%
! AACTCCTTTGGGGGCTTTAC+CGG - chr3_3:76867761-76867780 None:intergenic 50.0%
! GCCAACGTTGATAGATCAGC+CGG + chr3_3:76867814-76867833 Msa0474050:CDS 50.0%
TCCGGCTGATCTATCAACGT+TGG - chr3_3:76867818-76867837 None:intergenic 50.0%
AGGTGCAGAGTGAACCTAAG+TGG + chr3_3:76868237-76868256 Msa0474050:CDS 50.0%
!! GGTACTGATTGGTCCCAAAG+GGG - chr3_3:76868349-76868368 None:intergenic 50.0%
! ACGGCGAAAGCTGGTTCATT+TGG - chr3_3:76868370-76868389 None:intergenic 50.0%
AACCACTGTACGTGGTCACT+TGG + chr3_3:76868529-76868548 Msa0474050:three_prime_UTR 50.0%
ACCACTGTACGTGGTCACTT+GGG + chr3_3:76868530-76868549 Msa0474050:three_prime_UTR 50.0%
GCCATGTAGTGTTCTGTAGC+TGG + chr3_3:76868751-76868770 Msa0474050:three_prime_UTR 50.0%
! GGGTGAAATCTGAAACCAGG+TGG - chr3_3:76867349-76867368 None:intergenic 50.0%
! GTGGGGTGAAATCTGAAACC+AGG - chr3_3:76867352-76867371 None:intergenic 50.0%
TTTGATCCATGGCAGCTTCC+AGG + chr3_3:76867463-76867482 Msa0474050:CDS 50.0%
TAAGTACCTGGAAGCTGCCA+TGG - chr3_3:76867472-76867491 None:intergenic 50.0%
GAGCTGCTGGAAGTGGTTAT+TGG + chr3_3:76867662-76867681 Msa0474050:CDS 50.0%
! AACTCCTTTGGGGGCTTTAC+CGG - chr3_3:76867761-76867780 None:intergenic 50.0%
! GCCAACGTTGATAGATCAGC+CGG + chr3_3:76867814-76867833 Msa0474050:CDS 50.0%
TCCGGCTGATCTATCAACGT+TGG - chr3_3:76867818-76867837 None:intergenic 50.0%
AGGTGCAGAGTGAACCTAAG+TGG + chr3_3:76868237-76868256 Msa0474050:CDS 50.0%
!! GGTACTGATTGGTCCCAAAG+GGG - chr3_3:76868349-76868368 None:intergenic 50.0%
! ACGGCGAAAGCTGGTTCATT+TGG - chr3_3:76868370-76868389 None:intergenic 50.0%
AACCACTGTACGTGGTCACT+TGG + chr3_3:76868529-76868548 Msa0474050:three_prime_UTR 50.0%
ACCACTGTACGTGGTCACTT+GGG + chr3_3:76868530-76868549 Msa0474050:three_prime_UTR 50.0%
GCCATGTAGTGTTCTGTAGC+TGG + chr3_3:76868751-76868770 Msa0474050:three_prime_UTR 50.0%
! CGATTTGGCCGCGAACCATT+AGG - chr3_3:76867643-76867662 None:intergenic 55.0%
CCACTTCCAGCAGCTCGATT+TGG - chr3_3:76867658-76867677 None:intergenic 55.0%
CCAAATCGAGCTGCTGGAAG+TGG + chr3_3:76867655-76867674 Msa0474050:CDS 55.0%
TATGCCGGTAAAGCCCCCAA+AGG + chr3_3:76867754-76867773 Msa0474050:CDS 55.0%
CTAGAGTCCGTGTGCAGCTT+TGG - chr3_3:76868170-76868189 None:intergenic 55.0%
TCTCTGTCGCACGTGACATC+CGG - chr3_3:76868218-76868237 None:intergenic 55.0%
GAACCAGCTTTCGCCGTTAC+AGG + chr3_3:76868373-76868392 Msa0474050:CDS 55.0%
TGTCCTGTAACGGCGAAAGC+TGG - chr3_3:76868379-76868398 None:intergenic 55.0%
ACCCAAGTGACCACGTACAG+TGG - chr3_3:76868534-76868553 None:intergenic 55.0%
! CGATTTGGCCGCGAACCATT+AGG - chr3_3:76867643-76867662 None:intergenic 55.0%
CCACTTCCAGCAGCTCGATT+TGG - chr3_3:76867658-76867677 None:intergenic 55.0%
CCAAATCGAGCTGCTGGAAG+TGG + chr3_3:76867655-76867674 Msa0474050:CDS 55.0%
TATGCCGGTAAAGCCCCCAA+AGG + chr3_3:76867754-76867773 Msa0474050:CDS 55.0%
CTAGAGTCCGTGTGCAGCTT+TGG - chr3_3:76868170-76868189 None:intergenic 55.0%
TCTCTGTCGCACGTGACATC+CGG - chr3_3:76868218-76868237 None:intergenic 55.0%
GAACCAGCTTTCGCCGTTAC+AGG + chr3_3:76868373-76868392 Msa0474050:CDS 55.0%
TGTCCTGTAACGGCGAAAGC+TGG - chr3_3:76868379-76868398 None:intergenic 55.0%
ACCCAAGTGACCACGTACAG+TGG - chr3_3:76868534-76868553 None:intergenic 55.0%
CACACGGACTCTAGCAGCTC+CGG + chr3_3:76868176-76868195 Msa0474050:CDS 60.0%
CGGTGAAACCACGTGTCCAC+CGG - chr3_3:76868198-76868217 None:intergenic 60.0%
CGGTGGACACGTGGTTTCAC+CGG + chr3_3:76868196-76868215 Msa0474050:CDS 60.0%
GGATGTCACGTGCGACAGAG+AGG + chr3_3:76868217-76868236 Msa0474050:CDS 60.0%
CACACGGACTCTAGCAGCTC+CGG + chr3_3:76868176-76868195 Msa0474050:CDS 60.0%
CGGTGAAACCACGTGTCCAC+CGG - chr3_3:76868198-76868217 None:intergenic 60.0%
CGGTGGACACGTGGTTTCAC+CGG + chr3_3:76868196-76868215 Msa0474050:CDS 60.0%
GGATGTCACGTGCGACAGAG+AGG + chr3_3:76868217-76868236 Msa0474050:CDS 60.0%
TCGCGGCCAAATCGAGCTGC+TGG + chr3_3:76867649-76867668 Msa0474050:CDS 65.0%
ACGGACTCTAGCAGCTCCGG+TGG + chr3_3:76868179-76868198 Msa0474050:CDS 65.0%
TAGCAGCTCCGGTGGACACG+TGG + chr3_3:76868187-76868206 Msa0474050:CDS 65.0%
TCGCGGCCAAATCGAGCTGC+TGG + chr3_3:76867649-76867668 Msa0474050:CDS 65.0%
ACGGACTCTAGCAGCTCCGG+TGG + chr3_3:76868179-76868198 Msa0474050:CDS 65.0%
TAGCAGCTCCGGTGGACACG+TGG + chr3_3:76868187-76868206 Msa0474050:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 76867135 76868844 76867135 ID=Msa0474050;Name=Msa0474050
chr3_3 mRNA 76867135 76868844 76867135 ID=Msa0474050-mRNA-1;Parent=Msa0474050;Name=Msa0474050-mRNA-1;_AED=0.07;_eAED=0.07;_QI=190|1|1|1|1|1|3|417|292
chr3_3 exon 76867135 76867484 76867135 ID=Msa0474050-mRNA-1:exon:20288;Parent=Msa0474050-mRNA-1
chr3_3 exon 76867581 76867855 76867581 ID=Msa0474050-mRNA-1:exon:20289;Parent=Msa0474050-mRNA-1
chr3_3 exon 76867984 76868844 76867984 ID=Msa0474050-mRNA-1:exon:20290;Parent=Msa0474050-mRNA-1
chr3_3 five_prime_UTR 76867135 76867324 76867135 ID=Msa0474050-mRNA-1:five_prime_utr;Parent=Msa0474050-mRNA-1
chr3_3 CDS 76867325 76867484 76867325 ID=Msa0474050-mRNA-1:cds;Parent=Msa0474050-mRNA-1
chr3_3 CDS 76867581 76867855 76867581 ID=Msa0474050-mRNA-1:cds;Parent=Msa0474050-mRNA-1
chr3_3 CDS 76867984 76868427 76867984 ID=Msa0474050-mRNA-1:cds;Parent=Msa0474050-mRNA-1
chr3_3 three_prime_UTR 76868428 76868844 76868428 ID=Msa0474050-mRNA-1:three_prime_utr;Parent=Msa0474050-mRNA-1
Gene Sequence

>Msa0474050

ATGCAAGGTGAATTAGAATTACCACCTGGTTTCAGATTTCACCCCACTGATGAAGAATTGGTGAATCATTACTTGTGTCGCAAATGTGCTGGTCAATCTATTTCTGTTCCCGTTGTCAAAGAAGTTGATTTGTATAAGTTTGATCCATGGCAGCTTCCAGAAATGGGTTACCATAGTGAGAAAGAATGGTATTTTTTCTCTCCAAGGGACAGAAAGTATCCTAATGGTTCGCGGCCAAATCGAGCTGCTGGAAGTGGTTATTGGAAAGCTACTGGAGCTGATAAACCAATTGGGAAATTGAAGCCGATGGGGATTAAAAAGGCGTTAGTATTCTATGCCGGTAAAGCCCCCAAAGGAGTTAAAACTAATTGGATTATGCACGAATATCGTCTTGCCAACGTTGATAGATCAGCCGGAAAGAAAAACAACTTGAGGCTTGATGATTGGGTGTTGTGTAGAATTTACAACAAGAAAGGCAAGATTGAGAAATTCAACACTAGTAACACACCAAAGGTTCAAAATTATTATGAACACGAAAAAGTAGAAGAACATGAGATGAAGCCAGAAATTCAAAAATTGGGGAATTACCAATTGTACATGGACACTTCAGATTCAGTTCCAAAGCTGCACACGGACTCTAGCAGCTCCGGTGGACACGTGGTTTCACCGGATGTCACGTGCGACAGAGAGGTGCAGAGTGAACCTAAGTGGAATGATCTTGGGATACAGCTGGATGACGCGTTTGATTTTCAGCTCAATTACTTGGAAAATGCTCTTTCATTTGATATTGACAATGACCCCTTTGGGACCAATCAGTACCAAATGAACCAGCTTTCGCCGTTACAGGACATGTTCATGTACCCACAAAAGCCATTTTGA
Protein sequence

>Msa0474050

MQGELELPPGFRFHPTDEELVNHYLCRKCAGQSISVPVVKEVDLYKFDPWQLPEMGYHSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKLKPMGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGKKNNLRLDDWVLCRIYNKKGKIEKFNTSNTPKVQNYYEHEKVEEHEMKPEIQKLGNYQLYMDTSDSVPKLHTDSSSSGGHVVSPDVTCDREVQSEPKWNDLGIQLDDAFDFQLNYLENALSFDIDNDPFGTNQYQMNQLSPLQDMFMYPQKPF*