AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1363650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1363650 MtrunA17_Chr1g0213671 95.745 141 3 1 1 138 382 522 1.29e-92 277
Msa1363650 MtrunA17_Chr8g0355961 55.556 117 51 1 8 124 389 504 4.12e-44 150
Msa1363650 MtrunA17_Chr8g0356001 55.556 117 51 1 8 124 389 504 1.06e-43 149
Msa1363650 MtrunA17_Chr1g0205371 57.265 117 49 1 8 124 381 496 1.32e-43 149
Msa1363650 MtrunA17_Chr1g0200961 50.000 124 61 1 1 124 373 495 6.80e-42 144
Msa1363650 MtrunA17_Chr7g0265611 57.895 114 47 1 11 123 401 514 1.12e-41 144
Msa1363650 MtrunA17_Chr1g0205361 54.237 118 53 1 8 125 380 496 1.12e-41 144
Msa1363650 MtrunA17_Chr5g0395321 53.676 136 61 2 2 136 374 508 1.81e-41 144
Msa1363650 MtrunA17_Chr5g0395331 55.285 123 53 2 2 123 381 502 2.21e-40 140
Msa1363650 MtrunA17_Chr1g0160861 52.991 117 54 1 8 124 221 336 1.05e-39 135
Msa1363650 MtrunA17_Chr7g0246181 52.294 109 51 1 13 121 390 497 1.47e-39 138
Msa1363650 MtrunA17_Chr1g0160851 52.991 117 54 1 8 124 380 495 1.78e-39 138
Msa1363650 MtrunA17_Chr5g0395381 54.839 124 54 2 2 124 349 471 3.51e-39 137
Msa1363650 MtrunA17_Chr7g0246121 50.000 118 58 1 4 121 379 495 3.77e-39 137
Msa1363650 MtrunA17_Chr7g0246151 50.877 114 55 1 8 121 385 497 4.10e-39 137
Msa1363650 MtrunA17_Chr7g0246221 51.754 114 54 1 8 121 386 498 9.56e-39 136
Msa1363650 MtrunA17_Chr7g0246131 52.252 111 52 1 11 121 390 499 5.75e-38 134
Msa1363650 MtrunA17_Chr1g0164211 51.282 117 56 1 8 124 377 492 6.67e-37 131
Msa1363650 MtrunA17_Chr5g0423621 47.967 123 61 2 2 124 61 180 1.86e-36 123
Msa1363650 MtrunA17_Chr3g0101801 44.615 130 71 1 5 134 388 516 2.72e-36 130
Msa1363650 MtrunA17_Chr3g0086681 47.656 128 64 1 1 125 40 167 5.10e-36 122
Msa1363650 MtrunA17_Chr3g0101731 48.819 127 64 1 5 131 381 506 5.37e-36 129
Msa1363650 MtrunA17_Chr5g0445361 44.800 125 68 1 2 126 14 137 1.04e-35 120
Msa1363650 MtrunA17_Chr3g0086651 50.000 128 61 1 1 125 378 505 1.76e-35 127
Msa1363650 MtrunA17_Chr5g0446161 46.774 124 65 1 3 126 378 500 2.37e-35 127
Msa1363650 MtrunA17_Chr3g0086661 50.000 128 61 1 1 125 378 505 4.24e-35 126
Msa1363650 MtrunA17_Chr1g0167321 49.167 120 60 1 5 124 380 498 5.59e-35 126
Msa1363650 MtrunA17_Chr4g0028321 42.500 120 69 0 4 123 35 154 8.31e-35 118
Msa1363650 MtrunA17_Chr4g0020041 47.107 121 63 1 4 124 381 500 1.13e-34 125
Msa1363650 MtrunA17_Chr3g0101721 47.541 122 63 1 5 126 383 503 1.42e-34 125
Msa1363650 MtrunA17_Chr4g0039901 51.304 115 55 1 8 122 382 495 1.76e-34 124
Msa1363650 MtrunA17_Chr3g0101831 46.721 122 64 1 5 126 382 502 2.19e-34 124
Msa1363650 MtrunA17_Chr3g0101611 45.669 127 68 1 4 130 382 507 3.12e-34 124
Msa1363650 MtrunA17_Chr3g0101741 45.528 123 61 2 5 127 308 424 3.89e-34 123
Msa1363650 MtrunA17_Chr5g0446151 45.968 124 66 1 3 126 379 501 5.34e-34 123
Msa1363650 MtrunA17_Chr8g0344181 46.774 124 65 1 2 125 383 505 8.38e-34 123
Msa1363650 MtrunA17_Chr5g0405001 44.628 121 67 0 4 124 391 511 9.95e-34 123
Msa1363650 MtrunA17_Chr6g0463801 46.400 125 64 2 3 126 375 497 1.70e-33 122
Msa1363650 MtrunA17_Chr8g0357431 46.721 122 64 1 5 126 382 502 1.72e-33 122
Msa1363650 MtrunA17_Chr3g0101751 46.018 113 60 1 3 115 386 497 1.87e-33 122
Msa1363650 MtrunA17_Chr2g0310351 43.902 123 68 1 2 124 77 198 1.88e-33 116
Msa1363650 MtrunA17_Chr3g0101811 47.899 119 61 1 5 123 396 513 2.29e-33 122
Msa1363650 MtrunA17_Chr4g0011941 45.902 122 65 1 2 123 77 197 3.73e-33 115
Msa1363650 MtrunA17_Chr4g0061381 45.312 128 67 1 1 125 375 502 5.25e-33 120
Msa1363650 MtrunA17_Chr1g0162801 46.667 120 63 1 5 124 383 501 7.35e-33 120
Msa1363650 MtrunA17_Chr3g0101821 46.721 122 64 1 6 127 382 502 7.77e-33 120
Msa1363650 MtrunA17_Chr2g0280261 45.736 129 69 1 3 131 372 499 8.54e-33 120
Msa1363650 MtrunA17_Chr2g0310381 45.528 123 66 1 2 124 370 491 8.62e-33 120
Msa1363650 MtrunA17_Chr5g0431591 42.857 126 71 1 2 127 195 319 8.71e-33 117
Msa1363650 MtrunA17_Chr5g0431671 44.628 121 66 1 4 124 380 499 9.21e-33 120
Msa1363650 MtrunA17_Chr8g0382901 43.089 123 69 1 2 124 831 952 9.70e-33 121
Msa1363650 MtrunA17_Chr8g0382901 44.262 122 67 1 2 123 352 472 6.42e-32 119
Msa1363650 MtrunA17_Chr5g0445421 47.934 121 62 1 4 124 432 551 1.22e-32 120
Msa1363650 MtrunA17_Chr1g0174431 43.846 130 66 2 2 125 76 204 1.45e-32 114
Msa1363650 MtrunA17_Chr2g0314781 54.444 90 40 1 8 97 67 155 1.55e-32 113
Msa1363650 MtrunA17_Chr1g0162811 45.455 121 65 1 4 124 379 498 2.04e-32 119
Msa1363650 MtrunA17_Chr4g0035921 43.333 120 68 0 4 123 391 510 2.28e-32 119
Msa1363650 MtrunA17_Chr3g0116681 45.600 125 67 1 2 126 380 503 2.80e-32 119
Msa1363650 MtrunA17_Chr5g0431641 44.628 121 66 1 4 124 379 498 2.85e-32 119
Msa1363650 MtrunA17_Chr5g0445351 50.000 112 55 1 2 113 100 210 3.17e-32 113
Msa1363650 MtrunA17_Chr5g0445381 46.032 126 67 1 2 127 408 532 4.95e-32 118
Msa1363650 MtrunA17_Chr3g0101761 45.946 111 59 1 5 115 381 490 5.00e-32 118
Msa1363650 MtrunA17_Chr3g0101701 45.902 122 65 1 5 126 385 505 5.19e-32 118
Msa1363650 MtrunA17_Chr8g0357421 45.902 122 65 1 5 126 381 501 5.33e-32 118
Msa1363650 MtrunA17_Chr3g0101601 44.715 123 66 2 5 126 376 497 5.48e-32 118
Msa1363650 MtrunA17_Chr8g0344151 42.742 124 70 1 2 125 381 503 8.03e-32 117
Msa1363650 MtrunA17_Chr5g0446101 44.355 124 68 1 4 127 192 314 1.16e-31 114
Msa1363650 MtrunA17_Chr3g0086691 43.750 128 69 1 1 125 378 505 1.18e-31 117
Msa1363650 MtrunA17_Chr7g0235551 43.077 130 68 2 2 126 379 507 1.28e-31 117
Msa1363650 MtrunA17_Chr8g0339331 45.528 123 63 2 4 125 393 512 1.93e-31 116
Msa1363650 MtrunA17_Chr2g0314731 46.154 117 48 3 8 124 380 481 1.94e-31 116
Msa1363650 MtrunA17_Chr2g0310391 44.715 123 67 1 2 124 370 491 2.07e-31 116
Msa1363650 MtrunA17_Chr1g0207841 41.406 128 70 1 2 124 390 517 2.19e-31 116
Msa1363650 MtrunA17_Chr4g0047641 44.800 125 68 1 2 126 393 516 5.64e-31 115
Msa1363650 MtrunA17_Chr4g0011901 46.281 121 64 1 2 122 373 492 6.26e-31 115
Msa1363650 MtrunA17_Chr3g0101631 46.774 124 61 3 5 126 376 496 6.64e-31 115
Msa1363650 MtrunA17_Chr3g0101621 45.161 124 66 2 4 126 369 491 6.79e-31 115
Msa1363650 MtrunA17_Chr3g0101651 45.082 122 66 1 5 126 385 505 7.54e-31 115
Msa1363650 MtrunA17_Chr3g0101661 43.443 122 68 1 5 126 384 504 1.02e-30 114
Msa1363650 MtrunA17_Chr4g0024771 45.833 120 64 1 4 123 379 497 1.09e-30 114
Msa1363650 MtrunA17_Chr3g0101711 43.443 122 68 1 5 126 384 504 1.21e-30 114
Msa1363650 MtrunA17_Chr5g0445531 46.610 118 62 1 6 123 380 496 1.32e-30 114
Msa1363650 MtrunA17_Chr5g0445461 44.444 126 69 1 2 127 377 501 1.47e-30 114
Msa1363650 MtrunA17_Chr3g0094231 44.882 127 65 2 1 125 375 498 1.57e-30 114
Msa1363650 MtrunA17_Chr3g0101671 42.149 121 69 1 4 124 384 503 1.59e-30 114
Msa1363650 MtrunA17_Chr5g0403351 45.528 123 62 3 6 126 384 503 1.82e-30 114
Msa1363650 MtrunA17_Chr4g0030711 39.695 131 71 2 2 124 388 518 1.95e-30 114
Msa1363650 MtrunA17_Chr8g0344191 42.742 124 71 0 2 125 414 537 2.23e-30 114
Msa1363650 MtrunA17_Chr5g0445451 43.651 126 70 1 2 127 377 501 2.56e-30 113
Msa1363650 MtrunA17_Chr4g0047691 42.400 125 71 1 2 126 392 515 3.00e-30 113
Msa1363650 MtrunA17_Chr5g0403331 44.531 128 66 3 1 126 380 504 3.38e-30 113
Msa1363650 MtrunA17_Chr2g0314721 46.154 117 48 3 8 124 391 492 3.74e-30 113
Msa1363650 MtrunA17_Chr4g0011981 46.218 119 63 1 4 122 375 492 4.18e-30 112
Msa1363650 MtrunA17_Chr3g0094171 42.537 134 72 3 1 132 382 512 4.84e-30 112
Msa1363650 MtrunA17_Chr6g0458561 44.000 125 66 2 2 125 404 525 7.58e-30 112
Msa1363650 MtrunA17_Chr4g0011961 45.378 119 64 1 4 122 374 491 1.01e-29 112
Msa1363650 MtrunA17_Chr6g0463621 42.063 126 70 1 4 126 78 203 1.27e-29 106
Msa1363650 MtrunA17_Chr3g0116741 44.800 125 67 2 5 128 395 518 1.68e-29 111
Msa1363650 MtrunA17_Chr4g0047661 42.188 128 73 1 2 129 394 520 2.08e-29 111
Msa1363650 MtrunA17_Chr4g0057001 42.520 127 69 2 4 130 395 517 2.16e-29 111
Msa1363650 MtrunA17_Chr1g0156061 44.094 127 69 2 2 127 344 469 2.20e-29 110
Msa1363650 MtrunA17_Chr7g0258221 43.902 123 66 2 4 125 383 503 3.05e-29 110
Msa1363650 MtrunA17_Chr3g0101691 43.089 123 69 1 5 127 385 506 3.34e-29 110
Msa1363650 MtrunA17_Chr1g0197871 47.863 117 49 3 8 124 379 483 4.46e-29 110
Msa1363650 MtrunA17_Chr1g0174471 42.742 124 65 3 4 125 400 519 4.87e-29 110
Msa1363650 MtrunA17_Chr1g0197881 52.041 98 45 2 8 105 378 473 5.23e-29 109
Msa1363650 MtrunA17_Chr5g0445441 42.857 126 71 1 2 127 418 542 5.82e-29 110
Msa1363650 MtrunA17_Chr4g0011881 44.643 112 61 1 4 115 375 485 6.02e-29 109
Msa1363650 MtrunA17_Chr5g0445371 41.463 123 71 1 2 124 107 228 6.04e-29 105
Msa1363650 MtrunA17_Chr1g0156081 44.094 127 69 2 2 127 412 537 9.55e-29 109
Msa1363650 MtrunA17_Chr3g0101581 38.095 126 77 1 4 129 381 505 1.08e-28 108
Msa1363650 MtrunA17_Chr4g0076161 42.520 127 69 1 4 126 377 503 1.13e-28 108
Msa1363650 MtrunA17_Chr5g0406651 45.614 114 61 1 2 115 374 486 1.13e-28 108
Msa1363650 MtrunA17_Chr6g0484841 37.795 127 77 2 2 127 380 505 1.22e-28 108
Msa1363650 MtrunA17_Chr1g0197851 50.000 102 49 2 8 109 379 478 1.68e-28 108
Msa1363650 MtrunA17_Chr1g0156101 44.094 127 69 2 2 127 388 513 1.84e-28 108
Msa1363650 MtrunA17_Chr1g0197891 50.000 102 49 2 8 109 379 478 2.29e-28 108
Msa1363650 MtrunA17_Chr8g0362481 41.129 124 68 2 4 125 314 434 2.40e-28 107
Msa1363650 MtrunA17_Chr4g0056951 40.945 127 71 2 4 130 390 512 2.48e-28 108
Msa1363650 MtrunA17_Chr8g0362701 41.129 124 68 2 4 125 383 503 3.52e-28 107
Msa1363650 MtrunA17_Chr3g0101541 46.226 106 56 1 5 110 32 136 3.69e-28 100
Msa1363650 MtrunA17_Chr5g0403321 44.628 121 62 3 8 126 389 506 5.07e-28 107
Msa1363650 MtrunA17_Chr5g0419691 45.536 112 60 1 4 115 375 485 1.04e-27 106
Msa1363650 MtrunA17_Chr4g0011851 42.857 112 63 1 4 115 94 204 1.21e-27 101
Msa1363650 MtrunA17_Chr4g0046681 38.400 125 73 2 2 125 107 228 1.44e-27 102
Msa1363650 MtrunA17_Chr4g0046701 38.400 125 73 2 2 125 35 156 1.55e-27 100
Msa1363650 MtrunA17_Chr4g0047631 40.000 125 74 1 2 126 389 512 1.72e-27 105
Msa1363650 MtrunA17_Chr7g0218601 42.857 105 58 2 5 109 379 481 1.87e-27 105
Msa1363650 MtrunA17_Chr5g0444981 43.478 115 58 3 8 122 93 200 1.98e-27 101
Msa1363650 MtrunA17_Chr3g0101571 39.837 123 73 1 4 126 378 499 1.99e-27 105
Msa1363650 MtrunA17_Chr4g0053621 45.299 117 55 2 6 122 383 490 2.01e-27 105
Msa1363650 MtrunA17_Chr5g0430091 40.496 121 70 2 4 123 382 501 2.11e-27 105
Msa1363650 MtrunA17_Chr4g0058281 40.800 125 72 2 3 126 391 514 2.36e-27 105
Msa1363650 MtrunA17_Chr4g0052881 44.531 128 59 3 4 131 378 493 2.66e-27 105
Msa1363650 MtrunA17_Chr6g0451751 42.742 124 67 3 4 126 402 522 3.00e-27 105
Msa1363650 MtrunA17_Chr4g0011921 42.857 119 67 1 4 122 375 492 3.09e-27 105
Msa1363650 MtrunA17_Chr8g0390871 39.516 124 72 3 2 124 103 224 3.94e-27 100
Msa1363650 MtrunA17_Chr7g0218611 43.810 105 57 2 5 109 380 482 4.42e-27 104
Msa1363650 MtrunA17_Chr5g0431501 43.802 121 67 1 2 122 379 498 4.53e-27 104
Msa1363650 MtrunA17_Chr5g0431461 43.802 121 67 1 2 122 379 498 4.53e-27 104
Msa1363650 MtrunA17_Chr5g0430151 38.017 121 73 2 4 123 53 172 4.91e-27 99.4
Msa1363650 MtrunA17_Chr3g0082701 40.602 133 75 2 4 135 403 532 5.95e-27 104
Msa1363650 MtrunA17_Chr8g0390881 37.903 124 75 2 2 124 380 502 6.03e-27 104
Msa1363650 MtrunA17_Chr5g0430131 39.837 123 72 2 2 123 379 500 9.53e-27 103
Msa1363650 MtrunA17_Chr6g0451641 39.516 124 71 2 4 126 395 515 9.59e-27 103
Msa1363650 MtrunA17_Chr1g0176831 41.026 117 54 3 8 124 410 511 1.01e-26 103
Msa1363650 MtrunA17_Chr1g0174481 39.394 132 73 4 2 130 377 504 1.01e-26 103
Msa1363650 MtrunA17_Chr7g0255531 41.935 124 71 1 2 125 373 495 1.03e-26 103
Msa1363650 MtrunA17_Chr4g0046631 41.600 125 69 2 2 125 395 516 1.13e-26 103
Msa1363650 MtrunA17_Chr6g0451691 41.935 124 68 3 4 126 406 526 1.49e-26 103
Msa1363650 MtrunA17_Chr5g0401691 42.500 120 62 2 1 120 389 501 1.52e-26 103
Msa1363650 MtrunA17_Chr6g0451771 40.650 123 69 2 4 125 100 219 1.58e-26 99.4
Msa1363650 MtrunA17_Chr6g0463791 40.476 126 72 1 4 126 374 499 1.59e-26 103
Msa1363650 MtrunA17_Chr8g0372251 42.149 121 70 0 4 124 383 503 1.80e-26 102
Msa1363650 MtrunA17_Chr4g0030701 41.732 127 66 2 6 124 389 515 2.35e-26 102
Msa1363650 MtrunA17_Chr5g0430071 40.164 122 71 2 4 124 235 355 2.41e-26 101
Msa1363650 MtrunA17_Chr6g0451681 43.902 123 65 2 4 125 355 474 2.50e-26 102
Msa1363650 MtrunA17_Chr6g0451781 39.837 123 70 3 4 125 435 554 3.02e-26 102
Msa1363650 MtrunA17_Chr8g0361471 42.276 123 70 1 2 124 378 499 3.23e-26 102
Msa1363650 MtrunA17_Chr5g0445761 42.149 121 69 1 4 124 79 198 4.34e-26 97.4
Msa1363650 MtrunA17_Chr6g0451811 39.370 127 73 3 4 129 83 206 5.65e-26 97.4
Msa1363650 MtrunA17_Chr5g0430101 39.669 121 71 2 4 123 379 498 6.96e-26 101
Msa1363650 MtrunA17_Chr4g0011871 42.857 112 63 1 4 115 376 486 7.38e-26 101
Msa1363650 MtrunA17_Chr1g0174441 37.903 124 71 3 4 125 406 525 1.10e-25 100
Msa1363650 MtrunA17_Chr6g0451741 42.623 122 66 3 5 125 425 543 1.16e-25 100
Msa1363650 MtrunA17_Chr6g0466941 41.463 123 68 2 4 125 396 515 1.30e-25 100
Msa1363650 MtrunA17_Chr3g0101591 36.000 125 79 1 4 128 117 240 1.53e-25 97.1
Msa1363650 MtrunA17_Chr6g0466331 40.000 130 77 1 2 131 378 506 1.83e-25 100
Msa1363650 MtrunA17_Chr5g0431511 42.975 121 68 1 2 122 379 498 1.88e-25 100
Msa1363650 MtrunA17_Chr6g0484811 37.097 124 76 2 2 124 381 503 1.95e-25 100
Msa1363650 MtrunA17_Chr6g0465511 40.000 130 77 1 2 131 378 506 2.08e-25 100
Msa1363650 MtrunA17_Chr5g0430081 38.843 121 72 2 4 123 380 499 2.78e-25 99.8
Msa1363650 MtrunA17_Chr6g0466901 43.089 123 66 2 4 125 395 514 3.17e-25 99.8
Msa1363650 MtrunA17_Chr5g0402981 42.063 126 68 3 2 125 68 190 3.75e-25 94.7
Msa1363650 MtrunA17_Chr4g0008101 41.463 123 68 3 4 125 402 521 5.05e-25 99.0
Msa1363650 MtrunA17_Chr2g0304871 38.211 123 72 2 4 125 393 512 9.46e-25 98.2
Msa1363650 MtrunA17_Chr4g0058211 38.843 121 71 2 8 128 101 218 9.57e-25 94.4
Msa1363650 MtrunA17_Chr2g0296661 39.394 132 68 3 4 135 382 501 1.79e-24 97.4
Msa1363650 MtrunA17_Chr4g0058191 39.669 121 70 2 8 128 373 490 2.09e-24 97.1
Msa1363650 MtrunA17_Chr1g0174451 35.200 125 77 2 2 125 383 504 2.16e-24 97.1
Msa1363650 MtrunA17_Chr4g0058261 37.795 127 76 2 2 126 408 533 2.81e-24 97.1
Msa1363650 MtrunA17_Chr8g0351801 37.500 128 71 2 6 124 389 516 4.26e-24 96.3
Msa1363650 MtrunA17_Chr4g0052861 39.496 119 63 2 4 122 377 486 5.12e-24 95.9
Msa1363650 MtrunA17_Chr4g0046661 37.600 125 74 2 2 125 101 222 7.20e-24 92.4
Msa1363650 MtrunA17_Chr7g0224551 38.060 134 72 3 6 128 377 510 7.25e-24 95.9
Msa1363650 MtrunA17_Chr6g0472311 38.889 126 75 2 2 126 393 517 8.36e-24 95.5
Msa1363650 MtrunA17_Chr5g0430031 37.190 121 74 2 4 123 382 501 8.91e-24 95.5
Msa1363650 MtrunA17_Chr4g0039391 41.129 124 68 2 4 127 382 500 2.56e-23 94.0
Msa1363650 MtrunA17_Chr7g0224561 38.931 131 67 3 6 124 377 506 2.78e-23 94.0
Msa1363650 MtrunA17_Chr1g0174461 35.772 123 75 2 4 125 384 503 1.04e-22 92.4
Msa1363650 MtrunA17_Chr3g0084921 38.583 127 72 3 2 124 384 508 1.11e-22 92.4
Msa1363650 MtrunA17_Chr5g0430041 40.000 105 61 2 4 107 53 156 3.00e-22 86.7
Msa1363650 MtrunA17_Chr4g0052851 38.235 136 71 4 4 138 368 491 5.14e-22 90.5
Msa1363650 MtrunA17_Chr4g0046321 37.956 137 73 3 4 128 378 514 5.81e-22 90.5
Msa1363650 MtrunA17_Chr4g0046331 35.915 142 71 3 4 128 378 516 8.86e-22 89.7
Msa1363650 MtrunA17_Chr4g0058231 41.071 112 62 3 8 119 384 491 9.11e-22 89.7
Msa1363650 MtrunA17_Chr4g0017411 37.500 136 72 4 4 138 365 488 1.56e-21 89.0
Msa1363650 MtrunA17_Chr3g0117301 39.362 94 56 1 2 95 26 118 5.34e-21 82.0
Msa1363650 MtrunA17_Chr8g0339311 36.508 126 75 2 2 125 398 520 5.43e-21 87.4
Msa1363650 MtrunA17_Chr4g0046351 43.617 94 47 1 4 91 378 471 5.54e-21 87.4
Msa1363650 MtrunA17_Chr4g0076171 41.121 107 58 1 25 126 63 169 2.57e-20 81.6
Msa1363650 MtrunA17_Chr4g0058201 36.364 121 75 2 8 127 375 494 3.37e-20 85.1
Msa1363650 MtrunA17_Chr5g0401681 39.130 115 61 2 8 122 381 486 5.11e-20 84.7
Msa1363650 MtrunA17_Chr5g0419451 37.008 127 74 3 1 125 396 518 1.04e-19 84.0
Msa1363650 MtrunA17_Chr7g0258211 36.434 129 71 2 4 124 382 507 3.72e-19 82.4
Msa1363650 MtrunA17_Chr7g0254641 33.600 125 80 1 8 129 393 517 7.18e-19 81.6
Msa1363650 MtrunA17_Chr3g0116731 33.333 123 66 2 2 124 26 132 4.06e-18 75.1
Msa1363650 MtrunA17_Chr2g0296651 33.607 122 72 2 1 122 374 486 3.18e-17 77.0
Msa1363650 MtrunA17_Chr1g0200951 33.621 116 71 2 13 125 415 527 1.02e-16 75.5
Msa1363650 MtrunA17_Chr8g0346261 34.375 128 81 2 1 127 421 546 2.01e-16 74.7
Msa1363650 MtrunA17_Chr1g0210091 33.913 115 68 3 1 110 408 519 2.98e-16 73.9
Msa1363650 MtrunA17_Chr3g0107611 37.234 94 57 1 1 92 406 499 5.88e-16 73.2
Msa1363650 MtrunA17_Chr5g0432751 36.957 92 57 1 1 91 379 470 9.41e-16 72.8
Msa1363650 MtrunA17_Chr8g0377341 32.308 130 79 3 1 128 405 527 1.36e-15 72.0
Msa1363650 MtrunA17_Chr4g0030761 31.783 129 63 3 5 124 28 140 3.17e-15 67.8
Msa1363650 MtrunA17_Chr5g0413911 33.613 119 75 2 4 121 408 523 1.44e-14 69.3
Msa1363650 MtrunA17_Chr8g0387101 35.714 112 69 2 11 121 392 501 1.80e-14 68.9
Msa1363650 MtrunA17_Chr2g0280011 32.773 119 76 2 4 121 91 206 2.02e-14 67.0
Msa1363650 MtrunA17_Chr3g0107541 35.417 96 60 1 1 94 401 496 2.98e-14 68.2
Msa1363650 MtrunA17_Chr5g0409051 33.333 111 68 2 13 120 395 502 3.84e-14 68.2
Msa1363650 MtrunA17_Chr2g0280081 31.356 118 77 2 4 120 884 998 1.18e-13 66.6
Msa1363650 MtrunA17_Chr2g0280081 32.432 111 71 2 4 113 383 490 1.40e-13 66.6
Msa1363650 MtrunA17_Chr2g0280071 30.597 134 88 3 4 136 416 545 1.66e-13 66.2
Msa1363650 MtrunA17_Chr3g0107551 32.979 94 61 1 1 92 80 173 1.92e-13 64.3
Msa1363650 MtrunA17_Chr2g0280121 31.933 119 77 2 4 121 389 504 3.22e-13 65.5
Msa1363650 MtrunA17_Chr8g0364631 32.000 125 75 3 4 120 378 500 5.12e-13 64.7
Msa1363650 MtrunA17_Chr2g0280061 31.092 119 78 2 4 121 91 206 9.00e-13 62.8
Msa1363650 MtrunA17_Chr2g0280041 31.092 119 78 2 4 121 415 530 3.47e-12 62.4
Msa1363650 MtrunA17_Chr8g0364651 33.036 112 71 3 11 120 383 492 4.07e-12 62.4
Msa1363650 MtrunA17_Chr8g0370651 27.559 127 87 3 1 125 398 521 1.39e-11 60.8
Msa1363650 MtrunA17_Chr8g0383801 47.273 55 28 1 28 81 3 57 1.48e-11 57.0
Msa1363650 MtrunA17_Chr8g0370641 27.132 129 85 4 1 125 394 517 8.45e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1363650 AT3G52970.1 64.615 130 44 2 2 129 387 516 8.70e-55 179
Msa1363650 AT3G52970.2 64.615 130 44 2 2 129 401 530 1.27e-54 179
Msa1363650 AT3G61040.1 51.613 124 59 1 4 127 375 497 8.45e-40 139
Msa1363650 AT2G45570.1 50.847 118 57 1 11 128 394 510 5.07e-38 135
Msa1363650 AT2G45560.1 49.206 126 62 2 4 129 387 510 7.10e-36 129
Msa1363650 AT2G45550.1 52.137 117 55 1 11 127 393 508 8.11e-36 129
Msa1363650 AT2G45580.1 50.000 114 56 1 11 124 394 506 6.48e-35 126
Msa1363650 AT2G45580.2 50.000 114 56 1 11 124 240 352 7.75e-35 124
Msa1363650 AT1G13080.2 48.780 123 62 1 2 124 260 381 2.05e-34 123
Msa1363650 AT1G13080.1 48.780 123 62 1 2 124 378 499 1.01e-33 123
Msa1363650 AT5G07990.1 45.312 128 67 1 1 125 374 501 2.09e-33 122
Msa1363650 AT1G33720.1 47.368 114 59 1 11 124 393 505 7.53e-33 120
Msa1363650 AT5G25120.1 48.780 123 62 1 2 124 370 491 9.30e-33 120
Msa1363650 AT1G33730.1 48.624 109 55 1 11 119 257 364 1.02e-32 118
Msa1363650 AT1G33730.2 48.624 109 55 1 11 119 257 364 1.02e-32 118
Msa1363650 AT4G12300.1 44.262 122 65 1 4 125 389 507 1.54e-32 120
Msa1363650 AT4G12310.1 43.443 122 66 1 4 125 393 511 1.72e-32 120
Msa1363650 AT1G33720.4 45.763 118 63 1 11 128 261 377 2.33e-32 117
Msa1363650 AT1G33720.3 45.763 118 63 1 11 128 261 377 2.33e-32 117
Msa1363650 AT1G33720.5 45.763 118 63 1 11 128 261 377 2.33e-32 117
Msa1363650 AT1G33720.2 45.763 118 63 1 11 128 286 402 3.80e-32 117
Msa1363650 AT3G26300.1 44.800 125 68 1 2 126 374 497 6.69e-32 118
Msa1363650 AT5G25140.1 47.967 123 63 1 2 124 370 491 9.24e-32 117
Msa1363650 AT4G36220.1 44.444 117 65 0 8 124 397 513 1.15e-31 117
Msa1363650 AT5G25180.1 49.573 117 58 1 8 124 376 491 2.50e-31 116
Msa1363650 AT4G12320.1 43.443 122 66 1 4 125 391 509 2.62e-31 116
Msa1363650 AT3G26180.2 47.154 123 64 1 2 124 244 365 2.78e-31 114
Msa1363650 AT3G26170.1 47.967 123 63 1 2 124 378 499 4.33e-31 115
Msa1363650 AT4G22710.1 43.307 127 68 2 4 130 399 521 7.68e-31 115
Msa1363650 AT4G22690.1 43.307 127 68 2 4 130 430 552 9.99e-31 115
Msa1363650 AT5G25130.1 46.341 123 65 1 2 124 370 491 1.48e-30 114
Msa1363650 AT5G04330.1 41.732 127 74 0 8 134 386 512 1.60e-30 114
Msa1363650 AT3G26180.1 47.154 123 64 1 2 124 378 499 1.68e-30 114
Msa1363650 AT3G26200.1 42.857 126 71 1 2 127 375 499 3.86e-30 113
Msa1363650 AT3G26310.1 44.262 122 67 1 2 123 373 493 5.33e-30 113
Msa1363650 AT3G26150.1 47.154 123 64 1 2 124 378 499 8.49e-30 112
Msa1363650 AT3G26290.2 44.538 119 65 1 8 126 393 510 9.66e-30 112
Msa1363650 AT3G26290.1 44.538 119 65 1 8 126 380 497 9.75e-30 112
Msa1363650 AT5G35715.1 42.975 121 68 1 3 123 314 433 1.87e-29 110
Msa1363650 AT3G26320.1 41.935 124 71 1 3 126 375 497 2.25e-29 111
Msa1363650 AT3G26230.1 46.721 122 62 2 3 124 377 495 2.43e-29 111
Msa1363650 AT3G44250.1 43.651 126 70 1 2 127 374 498 2.47e-29 111
Msa1363650 AT3G26330.1 43.548 124 69 1 3 126 375 497 3.39e-29 110
Msa1363650 AT3G53300.1 40.650 123 72 1 2 124 375 496 2.45e-28 108
Msa1363650 AT3G26270.1 45.600 125 65 2 2 126 379 500 2.54e-28 108
Msa1363650 AT3G53280.1 41.270 126 73 1 2 127 373 497 4.42e-28 107
Msa1363650 AT2G02580.1 42.063 126 72 1 3 128 375 499 4.94e-28 107
Msa1363650 AT3G26210.1 44.715 123 67 1 2 124 377 498 7.27e-28 107
Msa1363650 AT3G26280.1 45.528 123 64 2 2 124 380 499 1.04e-27 106
Msa1363650 AT3G26280.2 45.528 123 64 2 2 124 397 516 1.13e-27 106
Msa1363650 AT4G12330.1 39.370 127 73 2 4 130 392 514 1.76e-27 106
Msa1363650 AT4G37430.1 41.803 122 66 2 4 125 375 491 2.33e-27 105
Msa1363650 AT1G66540.2 43.697 119 58 2 1 119 200 309 2.65e-27 103
Msa1363650 AT2G40890.1 42.373 118 67 1 8 125 378 494 2.96e-27 105
Msa1363650 AT1G66540.1 43.697 119 58 2 1 119 259 368 5.93e-27 103
Msa1363650 AT3G26220.1 41.803 122 68 2 3 124 380 498 6.29e-27 104
Msa1363650 AT3G25180.1 42.742 124 67 2 2 125 386 505 8.85e-27 104
Msa1363650 AT5G36220.2 45.082 122 58 2 1 122 232 344 1.18e-26 102
Msa1363650 AT3G26160.1 47.154 123 64 1 2 124 378 499 1.43e-26 103
Msa1363650 AT3G26190.1 41.463 123 71 1 2 124 375 496 2.12e-26 103
Msa1363650 AT4G37310.1 47.863 117 54 3 6 121 385 495 3.52e-26 102
Msa1363650 AT5G47990.1 42.063 126 65 2 4 125 385 506 3.64e-26 102
Msa1363650 AT5G67310.1 45.614 114 53 2 6 119 388 492 4.20e-26 102
Msa1363650 AT5G36220.1 45.082 122 58 2 1 122 378 490 4.72e-26 102
Msa1363650 AT5G57260.1 43.590 117 65 1 8 124 383 498 5.54e-26 102
Msa1363650 AT4G37360.1 43.443 122 60 2 1 122 372 484 6.60e-26 101
Msa1363650 AT4G37320.1 42.149 121 61 2 2 122 373 484 9.56e-26 101
Msa1363650 AT5G44620.1 38.889 126 73 2 5 130 394 515 1.23e-25 101
Msa1363650 AT3G48320.1 37.398 123 73 3 2 122 365 485 1.55e-25 100
Msa1363650 AT4G31500.1 43.802 121 66 2 8 126 378 498 1.65e-25 100
Msa1363650 AT4G31940.1 42.857 126 67 2 2 125 394 516 1.80e-25 100
Msa1363650 AT3G53290.1 43.089 123 69 1 2 124 282 403 3.36e-25 99.0
Msa1363650 AT4G37340.1 39.568 139 71 4 1 138 372 498 3.81e-25 99.8
Msa1363650 AT5G57220.1 45.217 115 54 3 8 122 374 479 1.30e-24 98.2
Msa1363650 AT4G37370.1 41.803 122 61 2 1 122 371 482 1.61e-24 97.8
Msa1363650 AT1G13110.1 37.705 122 75 1 3 124 381 501 1.70e-24 97.8
Msa1363650 AT3G48310.1 39.316 117 67 3 8 122 371 485 2.14e-24 97.4
Msa1363650 AT4G37400.1 40.870 115 65 1 8 122 374 485 3.51e-24 97.1
Msa1363650 AT4G37410.1 43.966 116 58 3 8 122 376 485 4.23e-24 96.7
Msa1363650 AT4G13770.1 40.164 122 71 2 3 123 376 496 5.94e-24 96.3
Msa1363650 AT4G31950.1 41.270 126 69 2 2 125 382 504 6.11e-24 96.3
Msa1363650 AT4G37330.1 40.984 122 63 2 1 122 369 481 6.73e-24 96.3
Msa1363650 AT3G48270.1 41.379 116 66 2 8 122 370 484 6.93e-24 95.9
Msa1363650 AT4G31970.1 41.270 126 69 2 2 125 393 515 8.04e-24 95.9
Msa1363650 AT3G28740.1 38.971 136 70 4 1 135 380 503 9.82e-24 95.9
Msa1363650 AT1G13100.1 40.909 110 64 1 8 117 380 488 2.28e-23 94.7
Msa1363650 AT1G74550.1 42.149 121 67 2 2 122 359 476 3.09e-23 94.4
Msa1363650 AT3G48280.1 37.008 127 76 3 2 126 364 488 4.33e-23 94.0
Msa1363650 AT1G74540.1 42.017 119 66 2 2 120 365 480 5.07e-23 93.6
Msa1363650 AT3G20935.1 39.231 130 70 3 1 125 208 333 5.62e-23 92.4
Msa1363650 AT3G26830.1 43.137 102 57 1 2 103 374 474 5.87e-23 93.6
Msa1363650 AT2G42250.1 34.615 130 75 2 4 126 384 510 7.46e-23 93.2
Msa1363650 AT3G20080.4 35.294 136 79 3 2 132 247 378 2.59e-22 90.9
Msa1363650 AT3G20080.5 35.294 136 79 3 2 132 247 378 2.59e-22 90.9
Msa1363650 AT3G20080.6 35.294 136 79 3 2 132 247 378 2.59e-22 90.9
Msa1363650 AT3G20080.3 35.294 136 79 3 2 132 247 378 2.59e-22 90.9
Msa1363650 AT2G24180.1 42.276 123 65 2 2 124 380 496 4.26e-22 91.3
Msa1363650 AT4G15380.1 32.847 137 83 3 4 135 381 513 6.80e-22 90.5
Msa1363650 AT3G20080.2 35.036 137 80 3 1 132 383 515 7.80e-22 90.5
Msa1363650 AT3G20080.1 35.036 137 80 3 1 132 383 515 7.80e-22 90.5
Msa1363650 AT5G42580.1 34.921 126 73 3 4 124 370 491 1.13e-21 89.7
Msa1363650 AT3G20140.1 37.903 124 72 2 2 124 383 502 1.35e-21 89.7
Msa1363650 AT2G25160.1 40.351 114 64 2 13 125 401 511 2.27e-21 89.0
Msa1363650 AT3G20960.1 38.095 126 70 3 4 125 282 403 2.92e-21 88.2
Msa1363650 AT5G24960.1 39.316 117 67 3 11 125 382 496 3.53e-21 88.6
Msa1363650 AT3G20960.2 38.095 126 70 3 4 125 385 506 4.60e-21 88.2
Msa1363650 AT2G27000.1 39.706 136 71 5 4 133 383 513 6.04e-21 87.8
Msa1363650 AT3G48300.1 40.678 118 62 4 8 123 368 479 6.24e-21 87.8
Msa1363650 AT3G48300.2 40.678 118 62 4 8 123 370 481 6.26e-21 87.8
Msa1363650 AT1G13090.2 40.179 112 64 2 2 113 374 482 8.92e-21 87.4
Msa1363650 AT3G20120.2 34.815 135 79 3 3 133 247 376 1.17e-20 86.3
Msa1363650 AT3G20120.3 34.815 135 79 3 3 133 247 376 1.17e-20 86.3
Msa1363650 AT3G20120.1 34.815 135 79 3 3 133 247 376 1.17e-20 86.3
Msa1363650 AT5G24950.1 40.870 115 64 3 11 123 381 493 1.47e-20 86.7
Msa1363650 AT3G20130.2 36.220 127 72 3 6 127 359 481 1.68e-20 86.7
Msa1363650 AT2G14100.1 39.516 124 68 4 4 124 386 505 1.69e-20 86.7
Msa1363650 AT3G20120.4 34.815 135 79 3 3 133 383 512 2.19e-20 86.3
Msa1363650 AT3G20130.1 36.220 127 72 3 6 127 387 509 2.26e-20 86.3
Msa1363650 AT1G50520.1 36.765 136 77 4 2 133 386 516 2.83e-20 85.9
Msa1363650 AT4G13310.1 37.391 115 68 3 11 123 382 494 2.84e-20 85.9
Msa1363650 AT3G48290.1 37.719 114 67 3 8 119 372 483 3.47e-20 85.5
Msa1363650 AT3G48290.2 37.719 114 67 3 8 119 398 509 3.86e-20 85.5
Msa1363650 AT5G10600.1 38.136 118 67 3 8 125 394 505 4.14e-20 85.5
Msa1363650 AT3G53305.1 35.772 123 69 3 2 124 213 325 4.28e-20 84.3
Msa1363650 AT2G23190.1 35.115 131 72 3 1 127 416 537 4.96e-20 85.1
Msa1363650 AT5G10610.1 37.815 119 68 3 8 126 378 490 8.51e-20 84.7
Msa1363650 AT1G64950.1 38.095 126 73 3 4 128 388 509 1.11e-19 84.3
Msa1363650 AT1G50560.1 36.220 127 73 2 2 124 387 509 1.43e-19 84.0
Msa1363650 AT2G30770.1 36.066 122 74 3 4 123 374 493 1.48e-19 84.0
Msa1363650 AT1G11610.1 36.066 122 74 3 4 123 374 493 1.55e-19 84.0
Msa1363650 AT2G27010.1 34.307 137 81 3 4 135 361 493 1.58e-19 84.0
Msa1363650 AT4G13290.1 35.652 115 70 3 11 123 375 487 1.81e-19 83.6
Msa1363650 AT1G11610.2 36.066 122 74 3 4 123 374 493 2.10e-19 83.6
Msa1363650 AT5G42590.1 39.130 115 67 3 11 123 381 494 2.18e-19 83.6
Msa1363650 AT4G15360.1 36.066 122 72 3 4 123 385 502 2.63e-19 83.2
Msa1363650 AT1G64940.1 37.302 126 74 3 4 128 389 510 2.94e-19 83.2
Msa1363650 AT2G30750.1 35.246 122 75 3 4 123 374 493 3.22e-19 82.8
Msa1363650 AT1G64930.1 37.795 127 74 3 4 128 387 510 3.41e-19 82.8
Msa1363650 AT3G20940.1 33.571 140 84 3 1 135 383 518 4.14e-19 82.8
Msa1363650 AT5G06900.1 32.540 126 77 2 4 129 378 495 9.33e-19 81.6
Msa1363650 AT3G20100.1 35.714 126 72 3 4 124 385 506 1.73e-18 80.9
Msa1363650 AT4G15330.2 38.400 125 70 4 4 125 353 473 1.82e-18 80.9
Msa1363650 AT3G20950.1 34.307 137 81 3 4 135 389 521 1.98e-18 80.9
Msa1363650 AT2G23220.1 35.043 117 66 3 4 119 390 497 2.13e-18 80.5
Msa1363650 AT4G15330.1 38.400 125 70 4 4 125 381 501 2.16e-18 80.5
Msa1363650 AT4G15350.1 37.008 127 71 3 4 125 379 501 3.47e-18 80.1
Msa1363650 AT3G32047.1 37.383 107 61 2 3 107 383 485 5.50e-18 79.3
Msa1363650 AT3G20090.1 33.600 125 77 3 4 125 249 370 6.35e-18 79.0
Msa1363650 AT3G20090.2 33.600 125 77 3 4 125 387 508 1.07e-17 78.6
Msa1363650 AT1G28430.1 33.333 126 74 3 6 125 385 506 1.49e-17 78.2
Msa1363650 AT3G20110.1 34.711 121 72 2 5 125 383 496 3.97e-17 77.0
Msa1363650 AT1G64900.1 35.714 126 76 3 4 127 382 504 8.78e-17 75.9
Msa1363650 AT5G25900.1 30.709 127 83 2 2 128 388 509 3.10e-16 74.3
Msa1363650 AT1G79370.1 38.144 97 60 0 1 97 409 505 3.86e-16 74.3
Msa1363650 AT2G30490.1 36.170 94 59 1 1 93 378 471 5.48e-16 73.6
Msa1363650 AT2G12190.1 35.772 123 74 3 4 124 388 507 6.48e-16 73.6
Msa1363650 AT5G61320.1 32.593 135 86 3 4 136 366 497 1.38e-15 72.4
Msa1363650 AT1G01190.1 32.258 124 79 3 1 121 405 526 2.96e-15 71.6
Msa1363650 AT1G01190.2 32.258 124 79 3 1 121 410 531 3.27e-15 71.6
Msa1363650 AT3G61880.1 31.343 134 87 3 1 131 403 534 3.67e-15 71.2
Msa1363650 AT3G61880.2 31.298 131 85 3 1 128 403 531 4.11e-15 71.2
Msa1363650 AT1G01280.1 30.469 128 80 2 2 125 380 502 4.62e-15 71.2
Msa1363650 AT1G74110.1 32.031 128 77 3 1 123 413 535 5.62e-15 70.9
Msa1363650 AT1G58260.1 30.973 113 73 1 1 108 392 504 8.09e-15 70.5
Msa1363650 AT1G13710.1 29.600 125 83 2 1 125 392 511 1.14e-14 70.1
Msa1363650 AT3G03470.1 33.071 127 77 4 6 127 387 510 2.85e-14 68.9
Msa1363650 AT2G46660.1 31.967 122 77 3 1 119 403 521 9.00e-14 67.4
Msa1363650 AT2G22330.1 33.333 96 63 1 1 95 410 505 1.61e-13 66.6
Msa1363650 AT2G22330.2 33.333 96 63 1 1 95 433 528 1.66e-13 66.6
Msa1363650 AT5G05260.1 34.043 94 61 1 1 93 366 459 3.15e-13 65.9
Msa1363650 AT5G05260.2 34.043 94 61 1 1 93 398 491 3.95e-13 65.5
Msa1363650 AT4G39950.1 32.653 98 65 1 1 97 408 505 4.49e-13 65.5
Msa1363650 AT5G09970.1 32.727 110 71 1 13 122 425 531 4.71e-13 65.5
Msa1363650 AT4G39950.2 32.653 98 65 1 1 97 448 545 4.82e-13 65.5
Msa1363650 AT1G58265.1 31.959 97 57 2 6 97 6 98 6.98e-13 62.4
Msa1363650 AT5G06905.1 35.000 100 52 1 8 94 380 479 1.03e-12 64.3
Msa1363650 AT5G35920.1 34.409 93 60 1 1 92 24 116 1.86e-12 61.2
Msa1363650 AT1G16410.1 29.323 133 87 2 1 126 401 533 2.68e-12 63.2
Msa1363650 AT1G16400.1 29.808 104 69 1 1 100 400 503 7.99e-12 61.6

Find 49 sgRNAs with CRISPR-Local

Find 56 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAAAATTTGTGTCTCTTT+TGG 0.177799 tig0018045:-67287 None:intergenic
CCTGTTGCTGCTGCTGTTGC+AGG 0.190147 tig0018045:+67635 Msa1363650:CDS
CCCTCCTCAACTCCTTTGAT+TGG 0.249670 tig0018045:+67501 Msa1363650:CDS
AACGGAGCATCCCACACTTT+TGG 0.279393 tig0018045:-67335 None:intergenic
CGCGAGGCAAGCGGCAATGC+CGG 0.282797 tig0018045:-67455 None:intergenic
TTAGTGAATGTTTGGGCAAT+TGG 0.318471 tig0018045:+67305 Msa1363650:CDS
CAAAAGGTATATACTCAAAA+TGG 0.326648 tig0018045:-67412 None:intergenic
GGGATGCTCCGTTATTGTTC+TGG 0.359177 tig0018045:+67345 Msa1363650:CDS
CCTTCGTAATCTACCATGTT+TGG 0.392686 tig0018045:-67386 None:intergenic
TAGTGAATGTTTGGGCAATT+GGG 0.397363 tig0018045:+67306 Msa1363650:CDS
ATGGACATGACAGAGGGAAT+GGG 0.404794 tig0018045:+67554 Msa1363650:CDS
GCCATGGACTCTTGCATGAT+TGG 0.411426 tig0018045:+67251 Msa1363650:CDS
CGTTATTGTTCTGGCTAGAA+AGG 0.424984 tig0018045:+67354 Msa1363650:CDS
CTGTTGCTGCTGCTGTTGCA+GGG 0.442372 tig0018045:+67636 Msa1363650:CDS
AGGAGTTGAGGAGGGAGCCT+AGG 0.443500 tig0018045:-67493 None:intergenic
TTTGGTTCCTCACATGGCCA+TGG 0.444863 tig0018045:+67235 None:intergenic
CCTGCAACAGCAGCAGCAAC+AGG 0.461754 tig0018045:-67635 None:intergenic
GATGGACATGACAGAGGGAA+TGG 0.463685 tig0018045:+67553 Msa1363650:CDS
TCTGTCATGTCCATCTCCTC+TGG 0.464224 tig0018045:-67545 None:intergenic
TGCCTCGCGTGTGCTTCCAC+TGG 0.469146 tig0018045:+67469 Msa1363650:CDS
GCGAGGCAAGCGGCAATGCC+GGG 0.469254 tig0018045:-67454 None:intergenic
GCAACAGGACTTCCTTTGTA+AGG 0.471983 tig0018045:-67620 None:intergenic
GGACTTCCTTTGTAAGGTAC+AGG 0.495887 tig0018045:-67614 None:intergenic
TTCGGGTCGGAGAATGTGCC+CGG 0.496354 tig0018045:+67436 Msa1363650:CDS
GGAGTTGAGGAGGGAGCCTA+GGG 0.513956 tig0018045:-67492 None:intergenic
TGGTCTTAAGCCAGAGGAGA+TGG 0.517441 tig0018045:+67535 Msa1363650:CDS
CTTTCTAGCCAGAACAATAA+CGG 0.528336 tig0018045:-67353 None:intergenic
AGGAGGGAGCCTAGGGCCAG+TGG 0.532215 tig0018045:-67485 None:intergenic
TCCAATCATGCAAGAGTCCA+TGG 0.539266 tig0018045:-67252 None:intergenic
TGAATGTTTGGGCAATTGGG+AGG 0.547014 tig0018045:+67309 Msa1363650:CDS
GAATGTTTGGGCAATTGGGA+GGG 0.547304 tig0018045:+67310 Msa1363650:CDS
GGTACAGGTATGACTTTCAA+AGG 0.549152 tig0018045:-67599 None:intergenic
TGTTGCTGCTGCTGTTGCAG+GGG 0.549880 tig0018045:+67637 Msa1363650:CDS
ATTCTCCGACCCGAACCAAA+AGG 0.552661 tig0018045:-67428 None:intergenic
ATCAGACAAAATCCAATCAA+AGG 0.557064 tig0018045:-67513 None:intergenic
GTCTGATGGTCTTAAGCCAG+AGG 0.564564 tig0018045:+67529 Msa1363650:CDS
AAATCCAATCAAAGGAGTTG+AGG 0.566927 tig0018045:-67505 None:intergenic
GGAAGCACACGCGAGGCAAG+CGG 0.573464 tig0018045:-67464 None:intergenic
TCCAATCAAAGGAGTTGAGG+AGG 0.575355 tig0018045:-67502 None:intergenic
AAGGTTTATGCAGCCAAACA+TGG 0.587354 tig0018045:+67373 Msa1363650:CDS
TGGACATGACAGAGGGAATG+GGG 0.587582 tig0018045:+67555 Msa1363650:CDS
GAGGAGATGGACATGACAGA+GGG 0.605353 tig0018045:+67548 Msa1363650:CDS
TTGGGAGGGATCCAAAAGTG+TGG 0.616012 tig0018045:+67324 Msa1363650:CDS
GGCCAGTGGAAGCACACGCG+AGG 0.619510 tig0018045:-67471 None:intergenic
TGGGAGGGATCCAAAAGTGT+GGG 0.620540 tig0018045:+67325 Msa1363650:CDS
GTCATACCTGTACCTTACAA+AGG 0.627472 tig0018045:+67608 Msa1363650:CDS
CCAATCAAAGGAGTTGAGGA+GGG 0.634163 tig0018045:-67501 None:intergenic
AGAGGAGATGGACATGACAG+AGG 0.643121 tig0018045:+67547 Msa1363650:CDS
CCAAACATGGTAGATTACGA+AGG 0.714979 tig0018045:+67386 Msa1363650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAAATTTTAGTGAATGTTT+GGG + tig0018045:67298-67317 Msa1363650:CDS 20.0%
!! ACTAAAATTTGTGTCTCTTT+TGG - tig0018045:67290-67309 None:intergenic 25.0%
!!! CACAAATTTTAGTGAATGTT+TGG + tig0018045:67297-67316 Msa1363650:CDS 25.0%
!! CAAAAGGTATATACTCAAAA+TGG - tig0018045:67415-67434 None:intergenic 25.0%
!!! CATTTTGAGTATATACCTTT+TGG + tig0018045:67413-67432 Msa1363650:CDS 25.0%
!! TGAGTATATACCTTTTGGTT+CGG + tig0018045:67418-67437 Msa1363650:CDS 30.0%
ATCAGACAAAATCCAATCAA+AGG - tig0018045:67516-67535 None:intergenic 30.0%
! TTTGATTGGATTTTGTCTGA+TGG + tig0018045:67515-67534 Msa1363650:CDS 30.0%
TTAGTGAATGTTTGGGCAAT+TGG + tig0018045:67305-67324 Msa1363650:CDS 35.0%
TAGTGAATGTTTGGGCAATT+GGG + tig0018045:67306-67325 Msa1363650:CDS 35.0%
! CTTTCTAGCCAGAACAATAA+CGG - tig0018045:67356-67375 None:intergenic 35.0%
!!! GAGTATATACCTTTTGGTTC+GGG + tig0018045:67419-67438 Msa1363650:CDS 35.0%
AAATCCAATCAAAGGAGTTG+AGG - tig0018045:67508-67527 None:intergenic 35.0%
! CGTTATTGTTCTGGCTAGAA+AGG + tig0018045:67354-67373 Msa1363650:CDS 40.0%
AAGGTTTATGCAGCCAAACA+TGG + tig0018045:67373-67392 Msa1363650:CDS 40.0%
CCTTCGTAATCTACCATGTT+TGG - tig0018045:67389-67408 None:intergenic 40.0%
CCAAACATGGTAGATTACGA+AGG + tig0018045:67386-67405 Msa1363650:CDS 40.0%
!!! ATATACCTTTTGGTTCGGGT+CGG + tig0018045:67423-67442 Msa1363650:CDS 40.0%
GGTACAGGTATGACTTTCAA+AGG - tig0018045:67602-67621 None:intergenic 40.0%
GTCATACCTGTACCTTACAA+AGG + tig0018045:67608-67627 Msa1363650:CDS 40.0%
TCCAATCATGCAAGAGTCCA+TGG - tig0018045:67255-67274 None:intergenic 45.0%
TGAATGTTTGGGCAATTGGG+AGG + tig0018045:67309-67328 Msa1363650:CDS 45.0%
GAATGTTTGGGCAATTGGGA+GGG + tig0018045:67310-67329 Msa1363650:CDS 45.0%
CCAATCAAAGGAGTTGAGGA+GGG - tig0018045:67504-67523 None:intergenic 45.0%
TCCAATCAAAGGAGTTGAGG+AGG - tig0018045:67505-67524 None:intergenic 45.0%
ATGGACATGACAGAGGGAAT+GGG + tig0018045:67554-67573 Msa1363650:CDS 45.0%
GGACTTCCTTTGTAAGGTAC+AGG - tig0018045:67617-67636 None:intergenic 45.0%
GCAACAGGACTTCCTTTGTA+AGG - tig0018045:67623-67642 None:intergenic 45.0%
GCCATGGACTCTTGCATGAT+TGG + tig0018045:67251-67270 Msa1363650:CDS 50.0%
TTGGGAGGGATCCAAAAGTG+TGG + tig0018045:67324-67343 Msa1363650:CDS 50.0%
! TGGGAGGGATCCAAAAGTGT+GGG + tig0018045:67325-67344 Msa1363650:CDS 50.0%
!! AACGGAGCATCCCACACTTT+TGG - tig0018045:67338-67357 None:intergenic 50.0%
GGGATGCTCCGTTATTGTTC+TGG + tig0018045:67345-67364 Msa1363650:CDS 50.0%
ATTCTCCGACCCGAACCAAA+AGG - tig0018045:67431-67450 None:intergenic 50.0%
CCCTCCTCAACTCCTTTGAT+TGG + tig0018045:67501-67520 Msa1363650:CDS 50.0%
! GTCTGATGGTCTTAAGCCAG+AGG + tig0018045:67529-67548 Msa1363650:CDS 50.0%
! TGGTCTTAAGCCAGAGGAGA+TGG + tig0018045:67535-67554 Msa1363650:CDS 50.0%
TCTGTCATGTCCATCTCCTC+TGG - tig0018045:67548-67567 None:intergenic 50.0%
AGAGGAGATGGACATGACAG+AGG + tig0018045:67547-67566 Msa1363650:CDS 50.0%
GAGGAGATGGACATGACAGA+GGG + tig0018045:67548-67567 Msa1363650:CDS 50.0%
GATGGACATGACAGAGGGAA+TGG + tig0018045:67553-67572 Msa1363650:CDS 50.0%
TGGACATGACAGAGGGAATG+GGG + tig0018045:67555-67574 Msa1363650:CDS 50.0%
CTGTTGCTGCTGCTGTTGCA+GGG + tig0018045:67636-67655 Msa1363650:CDS 55.0%
TGTTGCTGCTGCTGTTGCAG+GGG + tig0018045:67637-67656 Msa1363650:CDS 55.0%
TTCGGGTCGGAGAATGTGCC+CGG + tig0018045:67436-67455 Msa1363650:CDS 60.0%
GGAGTTGAGGAGGGAGCCTA+GGG - tig0018045:67495-67514 None:intergenic 60.0%
AGGAGTTGAGGAGGGAGCCT+AGG - tig0018045:67496-67515 None:intergenic 60.0%
CCTGCAACAGCAGCAGCAAC+AGG - tig0018045:67638-67657 None:intergenic 60.0%
CCTGTTGCTGCTGCTGTTGC+AGG + tig0018045:67635-67654 Msa1363650:CDS 60.0%
! GGAAGCACACGCGAGGCAAG+CGG - tig0018045:67467-67486 None:intergenic 65.0%
TGCCTCGCGTGTGCTTCCAC+TGG + tig0018045:67469-67488 Msa1363650:CDS 65.0%
CGTGTGCTTCCACTGGCCCT+AGG + tig0018045:67476-67495 Msa1363650:CDS 65.0%
GCGAGGCAAGCGGCAATGCC+GGG - tig0018045:67457-67476 None:intergenic 70.0%
CGCGAGGCAAGCGGCAATGC+CGG - tig0018045:67458-67477 None:intergenic 70.0%
! GGCCAGTGGAAGCACACGCG+AGG - tig0018045:67474-67493 None:intergenic 70.0%
AGGAGGGAGCCTAGGGCCAG+TGG - tig0018045:67488-67507 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0018045 gene 67248 67664 67248 ID=Msa1363650;Name=Msa1363650
tig0018045 mRNA 67248 67664 67248 ID=Msa1363650-mRNA-1;Parent=Msa1363650;Name=Msa1363650-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|-1|0|1|-1|1|1|0|138
tig0018045 exon 67248 67664 67248 ID=Msa1363650-mRNA-1:exon:13628;Parent=Msa1363650-mRNA-1
tig0018045 CDS 67248 67664 67248 ID=Msa1363650-mRNA-1:cds;Parent=Msa1363650-mRNA-1
Gene Sequence

>Msa1363650

ATGGCCATGGACTCTTGCATGATTGGAGACTACTTCATTCCAAAAGAGACACAAATTTTAGTGAATGTTTGGGCAATTGGGAGGGATCCAAAAGTGTGGGATGCTCCGTTATTGTTCTGGCTAGAAAGGTTTATGCAGCCAAACATGGTAGATTACGAAGGACACCATTTTGAGTATATACCTTTTGGTTCGGGTCGGAGAATGTGCCCGGCATTGCCGCTTGCCTCGCGTGTGCTTCCACTGGCCCTAGGCTCCCTCCTCAACTCCTTTGATTGGATTTTGTCTGATGGTCTTAAGCCAGAGGAGATGGACATGACAGAGGGAATGGGGATAACTTTGAGAAAAGTTGTTCCTTTGAAAGTCATACCTGTACCTTACAAAGGAAGTCCTGTTGCTGCTGCTGTTGCAGGGGAATGA
Protein sequence

>Msa1363650

MAMDSCMIGDYFIPKETQILVNVWAIGRDPKVWDAPLLFWLERFMQPNMVDYEGHHFEYIPFGSGRRMCPALPLASRVLPLALGSLLNSFDWILSDGLKPEEMDMTEGMGITLRKVVPLKVIPVPYKGSPVAAAVAGE*